2021-07-30T19:52:37,228 Created temporary directory: /tmp/pip-ephem-wheel-cache-e_4cegki 2021-07-30T19:52:37,231 Created temporary directory: /tmp/pip-req-tracker-zr494sat 2021-07-30T19:52:37,231 Initialized build tracking at /tmp/pip-req-tracker-zr494sat 2021-07-30T19:52:37,231 Created build tracker: /tmp/pip-req-tracker-zr494sat 2021-07-30T19:52:37,231 Entered build tracker: /tmp/pip-req-tracker-zr494sat 2021-07-30T19:52:37,232 Created temporary directory: /tmp/pip-wheel-9j4c7c6s 2021-07-30T19:52:37,260 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-30T19:52:37,260 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-30T19:52:37,260 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-30T19:52:37,261 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-30T19:52:37,261 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-30T19:52:37,264 WARNING: Location '/jcvi/' is ignored: it is 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-30T19:52:37,397 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-30T19:52:37,397 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-30T19:52:37,397 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-30T19:52:37,397 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-30T19:52:37,398 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-30T19:52:37,398 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-30T19:52:37,398 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-30T19:52:37,398 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-30T19:52:37,399 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-30T19:52:37,399 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-30T19:52:37,399 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-30T19:52:37,399 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-30T19:52:37,400 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-30T19:52:37,400 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-30T19:52:37,400 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-30T19:52:37,400 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-30T19:52:37,401 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-30T19:52:37,401 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-30T19:52:37,428 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-30T19:52:37,447 Collecting jcvi==1.1.17 2021-07-30T19:52:37,448 Created temporary directory: /tmp/pip-unpack-7oq0u7hp 2021-07-30T19:52:37,491 Downloading jcvi-1.1.17.tar.gz (795 kB) 2021-07-30T19:52:38,193 Added jcvi==1.1.17 from https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 to build tracker '/tmp/pip-req-tracker-zr494sat' 2021-07-30T19:52:38,194 Running setup.py (path:/tmp/pip-wheel-9j4c7c6s/jcvi_5f9cee7c971c45c487c70522e5fb27d5/setup.py) egg_info for package jcvi 2021-07-30T19:52:38,195 Created temporary directory: /tmp/pip-pip-egg-info-1iw671cs 2021-07-30T19:52:38,195 Running command python setup.py egg_info 2021-07-30T19:52:39,641 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.17' to '1.1.17' 2021-07-30T19:52:39,641 warnings.warn(tmpl.format(**locals())) 2021-07-30T19:52:39,696 running egg_info 2021-07-30T19:52:39,698 creating /tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info 2021-07-30T19:52:39,699 writing /tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info/PKG-INFO 2021-07-30T19:52:39,702 writing dependency_links to /tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info/dependency_links.txt 2021-07-30T19:52:39,704 writing requirements to /tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info/requires.txt 2021-07-30T19:52:39,705 writing top-level names to /tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info/top_level.txt 2021-07-30T19:52:39,706 writing manifest file '/tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info/SOURCES.txt' 2021-07-30T19:52:39,728 reading manifest file '/tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info/SOURCES.txt' 2021-07-30T19:52:39,730 reading manifest template 'MANIFEST.in' 2021-07-30T19:52:39,734 adding license file 'LICENSE' 2021-07-30T19:52:39,741 writing manifest file '/tmp/pip-pip-egg-info-1iw671cs/jcvi.egg-info/SOURCES.txt' 2021-07-30T19:52:39,843 Source in /tmp/pip-wheel-9j4c7c6s/jcvi_5f9cee7c971c45c487c70522e5fb27d5 has version 1.1.17, which satisfies requirement jcvi==1.1.17 from https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 2021-07-30T19:52:39,844 Removed jcvi==1.1.17 from https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 from build tracker '/tmp/pip-req-tracker-zr494sat' 2021-07-30T19:52:39,849 Created temporary directory: /tmp/pip-unpack-16v5ad96 2021-07-30T19:52:39,850 Building wheels for collected packages: jcvi 2021-07-30T19:52:39,854 Created temporary directory: /tmp/pip-wheel-fnm3riij 2021-07-30T19:52:39,855 Building wheel for jcvi (setup.py): started 2021-07-30T19:52:39,855 Destination directory: /tmp/pip-wheel-fnm3riij 2021-07-30T19:52:39,855 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9j4c7c6s/jcvi_5f9cee7c971c45c487c70522e5fb27d5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9j4c7c6s/jcvi_5f9cee7c971c45c487c70522e5fb27d5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fnm3riij 2021-07-30T19:52:41,233 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.17' to '1.1.17' 2021-07-30T19:52:41,234 warnings.warn(tmpl.format(**locals())) 2021-07-30T19:52:41,301 running bdist_wheel 2021-07-30T19:52:41,328 running build 2021-07-30T19:52:41,328 running build_py 2021-07-30T19:52:41,333 creating build 2021-07-30T19:52:41,334 creating build/lib.linux-armv7l-3.9 2021-07-30T19:52:41,334 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-30T19:52:41,335 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-30T19:52:41,337 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-30T19:52:41,340 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,341 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,342 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,345 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,347 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,349 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,351 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,354 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,356 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,359 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,361 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,362 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,366 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,369 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,372 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,374 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,376 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,379 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,382 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,385 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,388 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,389 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,392 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,395 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-30T19:52:41,399 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,400 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,402 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,405 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,407 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,409 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,411 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,413 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,415 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,418 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,419 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,422 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,424 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-30T19:52:41,428 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,429 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,434 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,436 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,439 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,441 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,443 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,446 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,449 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,452 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,455 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,457 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,458 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,462 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,464 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,467 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,469 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,472 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,474 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,477 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,479 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,483 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,486 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,491 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,494 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,499 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,503 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,504 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,506 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,509 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,511 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,514 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,515 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,519 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,523 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,526 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,528 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,530 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-30T19:52:41,535 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,536 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,538 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,540 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,543 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,545 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,548 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,551 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,553 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,556 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,559 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,562 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,564 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,566 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,568 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,571 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,574 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,577 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,579 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,581 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,583 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,585 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,590 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,593 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,596 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,598 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-30T19:52:41,602 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,602 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,606 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,609 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,610 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,613 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,615 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,619 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,621 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,623 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,625 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-30T19:52:41,629 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,629 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,632 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,634 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,636 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,639 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,642 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,644 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,647 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,650 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,652 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,654 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,657 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,661 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,663 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,665 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,668 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,671 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-30T19:52:41,675 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,676 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,679 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,683 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,686 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,689 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,692 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,694 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,697 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,699 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,702 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,707 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,710 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,712 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,716 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,719 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,721 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,724 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,726 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,729 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,731 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,734 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,740 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,741 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,744 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,747 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,750 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,753 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,755 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,757 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,759 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,763 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,765 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,768 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,770 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-30T19:52:41,774 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,775 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,778 copying jcvi/utils/validator.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,780 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,783 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,785 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,788 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,790 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,791 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,794 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,797 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,799 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,801 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,804 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,806 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-30T19:52:41,809 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,810 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,812 running egg_info 2021-07-30T19:52:41,822 writing jcvi.egg-info/PKG-INFO 2021-07-30T19:52:41,825 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-30T19:52:41,827 writing requirements to jcvi.egg-info/requires.txt 2021-07-30T19:52:41,828 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-30T19:52:41,848 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-30T19:52:41,855 reading manifest template 'MANIFEST.in' 2021-07-30T19:52:41,858 adding license file 'LICENSE' 2021-07-30T19:52:41,870 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-30T19:52:41,876 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:41,879 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:41,881 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,884 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,889 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,892 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,895 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,898 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,900 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,903 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,906 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,908 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,912 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,916 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-30T19:52:41,935 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-30T19:52:41,936 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.17' 2021-07-30T19:52:41,937 running build_ext 2021-07-30T19:52:42,007 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-30T19:52:42,631 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9j4c7c6s/jcvi_5f9cee7c971c45c487c70522e5fb27d5/jcvi/assembly/chic.pyx 2021-07-30T19:52:42,631 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-30T19:52:45,559 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-30T19:52:45,566 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9j4c7c6s/jcvi_5f9cee7c971c45c487c70522e5fb27d5/jcvi/formats/cblast.pyx 2021-07-30T19:52:45,566 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-30T19:52:46,508 building 'jcvi.assembly.chic' extension 2021-07-30T19:52:46,509 creating build/temp.linux-armv7l-3.9 2021-07-30T19:52:46,510 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-30T19:52:46,511 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-30T19:52:46,512 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-30T19:52:46,922 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-30T19:52:46,922 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-30T19:52:46,922 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-30T19:52:46,923 from jcvi/assembly/chic.c:612: 2021-07-30T19:52:46,923 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-30T19:52:46,923 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-30T19:52:46,923 | ^~~~~~~ 2021-07-30T19:52:50,668 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-30T19:52:50,796 building 'jcvi.formats.cblast' extension 2021-07-30T19:52:50,797 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-30T19:52:50,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-30T19:53:00,314 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-30T19:53:00,480 installing to build/bdist.linux-armv7l/wheel 2021-07-30T19:53:00,481 running install 2021-07-30T19:53:00,483 running install_lib 2021-07-30T19:53:00,487 creating build/bdist.linux-armv7l 2021-07-30T19:53:00,488 creating build/bdist.linux-armv7l/wheel 2021-07-30T19:53:00,491 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-30T19:53:00,493 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,494 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,497 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,500 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,503 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,506 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,509 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,512 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,516 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,519 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,522 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,524 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,527 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,530 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,533 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,536 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,539 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,542 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,545 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,549 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,552 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,554 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,557 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,560 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-30T19:53:00,564 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,566 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,569 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,571 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,574 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,576 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,579 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,582 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,584 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,587 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,589 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,592 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,595 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-30T19:53:00,599 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,600 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,606 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,609 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,612 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,614 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,617 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,619 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,621 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,624 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,627 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,630 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,632 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,634 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,638 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,640 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,662 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,665 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,667 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,670 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,672 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,674 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,676 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,680 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,683 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,688 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,691 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,699 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-30T19:53:00,702 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,703 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,706 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,708 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,711 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,714 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,715 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,719 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,724 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,727 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,729 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,731 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-30T19:53:00,735 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,736 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,738 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,740 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,742 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,745 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,748 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,751 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,753 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,757 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,760 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,762 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,765 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,767 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,769 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,772 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,775 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,778 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,780 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,782 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,784 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,786 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,789 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,793 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,796 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,798 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-30T19:53:00,800 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-30T19:53:00,803 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,804 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,809 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,811 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,813 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,816 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,818 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,822 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,824 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,826 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,829 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-30T19:53:00,831 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-30T19:53:00,834 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,835 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,838 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,840 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,843 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,846 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,848 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,850 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,854 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,857 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,860 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,862 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,865 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,870 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,872 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,875 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,878 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,881 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-30T19:53:00,885 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,886 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,889 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,891 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,896 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,907 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,911 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,915 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,917 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,920 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,922 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,924 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,928 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,931 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,933 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,936 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,940 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,943 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,946 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,948 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,950 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,953 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,955 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,958 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-30T19:53:00,963 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,964 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,967 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,969 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,972 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,975 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,976 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,979 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,982 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,986 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,988 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,991 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,993 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-30T19:53:00,997 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:00,998 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,001 copying build/lib.linux-armv7l-3.9/jcvi/utils/validator.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,003 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,006 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,008 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,010 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,012 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,014 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,017 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,019 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,023 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,024 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,026 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,028 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,031 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,034 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,037 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,039 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,040 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,043 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,048 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,050 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,053 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,057 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-30T19:53:01,060 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,062 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,064 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,066 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-30T19:53:01,068 running install_egg_info 2021-07-30T19:53:01,078 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.17-py3.9.egg-info 2021-07-30T19:53:01,093 running install_scripts 2021-07-30T19:53:01,159 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-30T19:53:01,164 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.17.dist-info/WHEEL 2021-07-30T19:53:01,166 creating '/tmp/pip-wheel-fnm3riij/jcvi-1.1.17-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-30T19:53:01,169 adding 'jcvi/__init__.py' 2021-07-30T19:53:01,170 adding 'jcvi/_version.py' 2021-07-30T19:53:01,172 adding 'jcvi/algorithms/__init__.py' 2021-07-30T19:53:01,173 adding 'jcvi/algorithms/__main__.py' 2021-07-30T19:53:01,175 adding 'jcvi/algorithms/ec.py' 2021-07-30T19:53:01,176 adding 'jcvi/algorithms/formula.py' 2021-07-30T19:53:01,179 adding 'jcvi/algorithms/graph.py' 2021-07-30T19:53:01,181 adding 'jcvi/algorithms/lis.py' 2021-07-30T19:53:01,184 adding 'jcvi/algorithms/lpsolve.py' 2021-07-30T19:53:01,186 adding 'jcvi/algorithms/matrix.py' 2021-07-30T19:53:01,188 adding 'jcvi/algorithms/maxsum.py' 2021-07-30T19:53:01,189 adding 'jcvi/algorithms/ml.py' 2021-07-30T19:53:01,191 adding 'jcvi/algorithms/supermap.py' 2021-07-30T19:53:01,193 adding 'jcvi/algorithms/tsp.py' 2021-07-30T19:53:01,195 adding 'jcvi/annotation/__init__.py' 2021-07-30T19:53:01,196 adding 'jcvi/annotation/__main__.py' 2021-07-30T19:53:01,199 adding 'jcvi/annotation/ahrd.py' 2021-07-30T19:53:01,201 adding 'jcvi/annotation/automaton.py' 2021-07-30T19:53:01,203 adding 'jcvi/annotation/depth.py' 2021-07-30T19:53:01,204 adding 'jcvi/annotation/evm.py' 2021-07-30T19:53:01,207 adding 'jcvi/annotation/maker.py' 2021-07-30T19:53:01,209 adding 'jcvi/annotation/pasa.py' 2021-07-30T19:53:01,212 adding 'jcvi/annotation/qc.py' 2021-07-30T19:53:01,220 adding 'jcvi/annotation/reformat.py' 2021-07-30T19:53:01,222 adding 'jcvi/annotation/stats.py' 2021-07-30T19:53:01,224 adding 'jcvi/annotation/train.py' 2021-07-30T19:53:01,227 adding 'jcvi/apps/__init__.py' 2021-07-30T19:53:01,228 adding 'jcvi/apps/__main__.py' 2021-07-30T19:53:01,231 adding 'jcvi/apps/align.py' 2021-07-30T19:53:01,242 adding 'jcvi/apps/base.py' 2021-07-30T19:53:01,246 adding 'jcvi/apps/biomart.py' 2021-07-30T19:53:01,251 adding 'jcvi/apps/blastplus.py' 2021-07-30T19:53:01,251 adding 'jcvi/apps/bowtie.py' 2021-07-30T19:53:01,251 adding 'jcvi/apps/bwa.py' 2021-07-30T19:53:01,253 adding 'jcvi/apps/cdhit.py' 2021-07-30T19:53:01,255 adding 'jcvi/apps/emboss.py' 2021-07-30T19:53:01,258 adding 'jcvi/apps/fetch.py' 2021-07-30T19:53:01,261 adding 'jcvi/apps/gbsubmit.py' 2021-07-30T19:53:01,263 adding 'jcvi/apps/gmap.py' 2021-07-30T19:53:01,266 adding 'jcvi/apps/grid.py' 2021-07-30T19:53:01,271 adding 'jcvi/apps/ks.py' 2021-07-30T19:53:01,273 adding 'jcvi/apps/lastz.py' 2021-07-30T19:53:01,275 adding 'jcvi/apps/mask.py' 2021-07-30T19:53:01,280 adding 'jcvi/apps/phylo.py' 2021-07-30T19:53:01,281 adding 'jcvi/apps/r.py' 2021-07-30T19:53:01,283 adding 'jcvi/apps/restriction.py' 2021-07-30T19:53:01,284 adding 'jcvi/apps/script.py' 2021-07-30T19:53:01,287 adding 'jcvi/apps/softlink.py' 2021-07-30T19:53:01,291 adding 'jcvi/apps/uclust.py' 2021-07-30T19:53:01,294 adding 'jcvi/apps/uniprot.py' 2021-07-30T19:53:01,295 adding 'jcvi/apps/vecscreen.py' 2021-07-30T19:53:01,297 adding 'jcvi/assembly/__init__.py' 2021-07-30T19:53:01,299 adding 'jcvi/assembly/__main__.py' 2021-07-30T19:53:01,309 adding 'jcvi/assembly/allmaps.py' 2021-07-30T19:53:01,312 adding 'jcvi/assembly/allpaths.py' 2021-07-30T19:53:01,314 adding 'jcvi/assembly/automaton.py' 2021-07-30T19:53:01,316 adding 'jcvi/assembly/base.py' 2021-07-30T19:53:01,321 adding 'jcvi/assembly/ca.py' 2021-07-30T19:53:01,370 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-30T19:53:01,373 adding 'jcvi/assembly/chic.pyx' 2021-07-30T19:53:01,375 adding 'jcvi/assembly/coverage.py' 2021-07-30T19:53:01,377 adding 'jcvi/assembly/gaps.py' 2021-07-30T19:53:01,380 adding 'jcvi/assembly/geneticmap.py' 2021-07-30T19:53:01,385 adding 'jcvi/assembly/goldenpath.py' 2021-07-30T19:53:01,394 adding 'jcvi/assembly/hic.py' 2021-07-30T19:53:01,399 adding 'jcvi/assembly/kmer.py' 2021-07-30T19:53:01,402 adding 'jcvi/assembly/opticalmap.py' 2021-07-30T19:53:01,406 adding 'jcvi/assembly/patch.py' 2021-07-30T19:53:01,409 adding 'jcvi/assembly/postprocess.py' 2021-07-30T19:53:01,413 adding 'jcvi/assembly/preprocess.py' 2021-07-30T19:53:01,415 adding 'jcvi/assembly/sim.py' 2021-07-30T19:53:01,417 adding 'jcvi/assembly/soap.py' 2021-07-30T19:53:01,419 adding 'jcvi/assembly/syntenypath.py' 2021-07-30T19:53:01,421 adding 'jcvi/assembly/trinity.py' 2021-07-30T19:53:01,423 adding 'jcvi/compara/__init__.py' 2021-07-30T19:53:01,425 adding 'jcvi/compara/__main__.py' 2021-07-30T19:53:01,427 adding 'jcvi/compara/blastfilter.py' 2021-07-30T19:53:01,431 adding 'jcvi/compara/catalog.py' 2021-07-30T19:53:01,435 adding 'jcvi/compara/fractionation.py' 2021-07-30T19:53:01,437 adding 'jcvi/compara/pad.py' 2021-07-30T19:53:01,439 adding 'jcvi/compara/phylogeny.py' 2021-07-30T19:53:01,441 adding 'jcvi/compara/quota.py' 2021-07-30T19:53:01,443 adding 'jcvi/compara/reconstruct.py' 2021-07-30T19:53:01,445 adding 'jcvi/compara/synfind.py' 2021-07-30T19:53:01,454 adding 'jcvi/compara/synteny.py' 2021-07-30T19:53:01,457 adding 'jcvi/formats/__init__.py' 2021-07-30T19:53:01,458 adding 'jcvi/formats/__main__.py' 2021-07-30T19:53:01,466 adding 'jcvi/formats/agp.py' 2021-07-30T19:53:01,472 adding 'jcvi/formats/base.py' 2021-07-30T19:53:01,482 adding 'jcvi/formats/bed.py' 2021-07-30T19:53:01,489 adding 'jcvi/formats/blast.py' 2021-07-30T19:53:01,632 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-30T19:53:01,640 adding 'jcvi/formats/cblast.pyx' 2021-07-30T19:53:01,641 adding 'jcvi/formats/cdt.py' 2021-07-30T19:53:01,643 adding 'jcvi/formats/chain.py' 2021-07-30T19:53:01,644 adding 'jcvi/formats/contig.py' 2021-07-30T19:53:01,646 adding 'jcvi/formats/coords.py' 2021-07-30T19:53:01,648 adding 'jcvi/formats/excel.py' 2021-07-30T19:53:01,658 adding 'jcvi/formats/fasta.py' 2021-07-30T19:53:01,662 adding 'jcvi/formats/fastq.py' 2021-07-30T19:53:01,665 adding 'jcvi/formats/genbank.py' 2021-07-30T19:53:01,679 adding 'jcvi/formats/gff.py' 2021-07-30T19:53:01,681 adding 'jcvi/formats/html.py' 2021-07-30T19:53:01,683 adding 'jcvi/formats/maf.py' 2021-07-30T19:53:01,684 adding 'jcvi/formats/obo.py' 2021-07-30T19:53:01,686 adding 'jcvi/formats/paf.py' 2021-07-30T19:53:01,687 adding 'jcvi/formats/pdf.py' 2021-07-30T19:53:01,689 adding 'jcvi/formats/psl.py' 2021-07-30T19:53:01,690 adding 'jcvi/formats/pyblast.py' 2021-07-30T19:53:01,694 adding 'jcvi/formats/sam.py' 2021-07-30T19:53:01,696 adding 'jcvi/formats/sizes.py' 2021-07-30T19:53:01,699 adding 'jcvi/formats/vcf.py' 2021-07-30T19:53:01,701 adding 'jcvi/graphics/__init__.py' 2021-07-30T19:53:01,702 adding 'jcvi/graphics/__main__.py' 2021-07-30T19:53:01,705 adding 'jcvi/graphics/align.py' 2021-07-30T19:53:01,707 adding 'jcvi/graphics/assembly.py' 2021-07-30T19:53:01,711 adding 'jcvi/graphics/base.py' 2021-07-30T19:53:01,713 adding 'jcvi/graphics/blastplot.py' 2021-07-30T19:53:01,716 adding 'jcvi/graphics/chromosome.py' 2021-07-30T19:53:01,718 adding 'jcvi/graphics/coverage.py' 2021-07-30T19:53:01,720 adding 'jcvi/graphics/dotplot.py' 2021-07-30T19:53:01,724 adding 'jcvi/graphics/glyph.py' 2021-07-30T19:53:01,727 adding 'jcvi/graphics/grabseeds.py' 2021-07-30T19:53:01,729 adding 'jcvi/graphics/graph.py' 2021-07-30T19:53:01,730 adding 'jcvi/graphics/heatmap.py' 2021-07-30T19:53:01,732 adding 'jcvi/graphics/histogram.py' 2021-07-30T19:53:01,734 adding 'jcvi/graphics/karyotype.py' 2021-07-30T19:53:01,738 adding 'jcvi/graphics/landscape.py' 2021-07-30T19:53:01,740 adding 'jcvi/graphics/logo.py' 2021-07-30T19:53:01,741 adding 'jcvi/graphics/mummerplot.py' 2021-07-30T19:53:01,744 adding 'jcvi/graphics/synteny.py' 2021-07-30T19:53:01,746 adding 'jcvi/graphics/table.py' 2021-07-30T19:53:01,749 adding 'jcvi/graphics/tree.py' 2021-07-30T19:53:01,751 adding 'jcvi/graphics/wheel.py' 2021-07-30T19:53:01,752 adding 'jcvi/graphics/whisker.py' 2021-07-30T19:53:01,754 adding 'jcvi/projects/__init__.py' 2021-07-30T19:53:01,755 adding 'jcvi/projects/__main__.py' 2021-07-30T19:53:01,758 adding 'jcvi/projects/age.py' 2021-07-30T19:53:01,759 adding 'jcvi/projects/alfalfa.py' 2021-07-30T19:53:01,762 adding 'jcvi/projects/allmaps.py' 2021-07-30T19:53:01,764 adding 'jcvi/projects/bites.py' 2021-07-30T19:53:01,765 adding 'jcvi/projects/heterosis.py' 2021-07-30T19:53:01,767 adding 'jcvi/projects/ies.py' 2021-07-30T19:53:01,771 adding 'jcvi/projects/misc.py' 2021-07-30T19:53:01,774 adding 'jcvi/projects/napus.py' 2021-07-30T19:53:01,777 adding 'jcvi/projects/pineapple.py' 2021-07-30T19:53:01,778 adding 'jcvi/projects/pistachio.py' 2021-07-30T19:53:01,787 adding 'jcvi/projects/str.py' 2021-07-30T19:53:01,789 adding 'jcvi/projects/sugarcane.py' 2021-07-30T19:53:01,793 adding 'jcvi/projects/synfind.py' 2021-07-30T19:53:01,796 adding 'jcvi/projects/tgbs.py' 2021-07-30T19:53:01,798 adding 'jcvi/projects/vanilla.py' 2021-07-30T19:53:01,800 adding 'jcvi/utils/__init__.py' 2021-07-30T19:53:01,801 adding 'jcvi/utils/__main__.py' 2021-07-30T19:53:01,804 adding 'jcvi/utils/aws.py' 2021-07-30T19:53:01,806 adding 'jcvi/utils/cbook.py' 2021-07-30T19:53:01,807 adding 'jcvi/utils/console.py' 2021-07-30T19:53:01,809 adding 'jcvi/utils/db.py' 2021-07-30T19:53:01,810 adding 'jcvi/utils/ez_setup.py' 2021-07-30T19:53:01,812 adding 'jcvi/utils/grouper.py' 2021-07-30T19:53:01,814 adding 'jcvi/utils/orderedcollections.py' 2021-07-30T19:53:01,816 adding 'jcvi/utils/range.py' 2021-07-30T19:53:01,818 adding 'jcvi/utils/table.py' 2021-07-30T19:53:01,819 adding 'jcvi/utils/taxonomy.py' 2021-07-30T19:53:01,820 adding 'jcvi/utils/validator.py' 2021-07-30T19:53:01,821 adding 'jcvi/utils/webcolors.py' 2021-07-30T19:53:01,825 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-30T19:53:01,842 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-30T19:53:01,846 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-30T19:53:01,852 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-30T19:53:01,856 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-30T19:53:01,857 adding 'jcvi/utils/data/__init__.py' 2021-07-30T19:53:01,858 adding 'jcvi/utils/data/adapters.fasta' 2021-07-30T19:53:01,860 adding 'jcvi/utils/data/blosum80.mat' 2021-07-30T19:53:01,861 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-30T19:53:01,862 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-30T19:53:01,868 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-30T19:53:01,871 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-30T19:53:01,872 adding 'jcvi/utils/data/instance.json' 2021-07-30T19:53:01,874 adding 'jcvi/variation/__init__.py' 2021-07-30T19:53:01,875 adding 'jcvi/variation/__main__.py' 2021-07-30T19:53:01,880 adding 'jcvi/variation/cnv.py' 2021-07-30T19:53:01,882 adding 'jcvi/variation/deconvolute.py' 2021-07-30T19:53:01,883 adding 'jcvi/variation/delly.py' 2021-07-30T19:53:01,885 adding 'jcvi/variation/impute.py' 2021-07-30T19:53:01,887 adding 'jcvi/variation/phase.py' 2021-07-30T19:53:01,889 adding 'jcvi/variation/snp.py' 2021-07-30T19:53:01,895 adding 'jcvi/variation/str.py' 2021-07-30T19:53:01,897 adding 'jcvi/variation/tassel.py' 2021-07-30T19:53:01,900 adding 'jcvi-1.1.17.dist-info/LICENSE' 2021-07-30T19:53:01,901 adding 'jcvi-1.1.17.dist-info/METADATA' 2021-07-30T19:53:01,903 adding 'jcvi-1.1.17.dist-info/WHEEL' 2021-07-30T19:53:01,903 adding 'jcvi-1.1.17.dist-info/top_level.txt' 2021-07-30T19:53:01,906 adding 'jcvi-1.1.17.dist-info/RECORD' 2021-07-30T19:53:01,930 removing build/bdist.linux-armv7l/wheel 2021-07-30T19:53:02,227 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-30T19:53:02,244 Created wheel for jcvi: filename=jcvi-1.1.17-cp39-cp39-linux_armv7l.whl size=1202363 sha256=59991f760b2ca1ace31f1a299905d76f567ecbb475bcfd56743515807339f89c 2021-07-30T19:53:02,245 Stored in directory: /tmp/pip-ephem-wheel-cache-e_4cegki/wheels/28/92/a5/dc55d48b184003c4d9a06510c32366bddaf80f19e7b1a3d67b 2021-07-30T19:53:02,264 Successfully built jcvi 2021-07-30T19:53:02,300 Removed build tracker: '/tmp/pip-req-tracker-zr494sat'