2021-07-31T04:36:34,230 Created temporary directory: /tmp/pip-ephem-wheel-cache-2sgd490s
2021-07-31T04:36:34,236 Created temporary directory: /tmp/pip-req-tracker-fu8cmtyq
2021-07-31T04:36:34,237 Initialized build tracking at /tmp/pip-req-tracker-fu8cmtyq
2021-07-31T04:36:34,237 Created build tracker: /tmp/pip-req-tracker-fu8cmtyq
2021-07-31T04:36:34,238 Entered build tracker: /tmp/pip-req-tracker-fu8cmtyq
2021-07-31T04:36:34,239 Created temporary directory: /tmp/pip-wheel-zrg6gv7u
2021-07-31T04:36:34,294 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-31T04:36:34,295 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-31T04:36:34,296 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-31T04:36:34,297 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-31T04:36:34,298 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-31T04:36:34,300 WARNING: Url '/apples/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T04:36:34,301 WARNING: Url 't/apples/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T04:36:34,302 WARNING: Url 'm/apples/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T04:36:34,302 WARNING: Url 'p/apples/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T04:36:34,304 1 location(s) to search for versions of apples:
2021-07-31T04:36:34,304 * https://pypi.org/simple/apples/
2021-07-31T04:36:34,304 Fetching project page and analyzing links: https://pypi.org/simple/apples/
2021-07-31T04:36:34,307 Getting page https://pypi.org/simple/apples/
2021-07-31T04:36:34,311 Found index url https://pypi.org/simple
2021-07-31T04:36:34,639   Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1
2021-07-31T04:36:34,640   Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3
2021-07-31T04:36:34,641   Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4
2021-07-31T04:36:34,642   Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0
2021-07-31T04:36:34,642   Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0
2021-07-31T04:36:34,643   Found link https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df (from https://pypi.org/simple/apples/), version: 2.0.1
2021-07-31T04:36:34,644   Found link https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 (from https://pypi.org/simple/apples/), version: 2.0.2
2021-07-31T04:36:34,645   Found link https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd (from https://pypi.org/simple/apples/), version: 2.0.3
2021-07-31T04:36:34,646   Found link https://files.pythonhosted.org/packages/11/aa/9a114032ccd2457d1031111160855525fe884d6c00a9126ee3c8bcff29dc/apples-2.0.4.tar.gz#sha256=dcca3f231d41f8892eab7db7064f9239e55190905412c2bf1877e9d5ae94b854 (from https://pypi.org/simple/apples/), version: 2.0.4
2021-07-31T04:36:34,647   Found link https://files.pythonhosted.org/packages/9b/34/8c91e8ab63b3a3a38fbdb91fcadcc1512bd74ad4b74782ceeba9e04043db/apples-2.0.5.tar.gz#sha256=6dc147168b6cec4d54798578fd5623a11a0544f785322526bfaa99db6b7b5fd2 (from https://pypi.org/simple/apples/), version: 2.0.5
2021-07-31T04:36:34,677 Given no hashes to check 1 links for project 'apples': discarding no candidates
2021-07-31T04:36:34,706 Collecting apples==2.0.5
2021-07-31T04:36:34,710   Created temporary directory: /tmp/pip-unpack-6r3d0qb3
2021-07-31T04:36:34,986   Downloading apples-2.0.5.tar.gz (758 kB)
2021-07-31T04:36:35,629   Added apples==2.0.5 from https://files.pythonhosted.org/packages/9b/34/8c91e8ab63b3a3a38fbdb91fcadcc1512bd74ad4b74782ceeba9e04043db/apples-2.0.5.tar.gz#sha256=6dc147168b6cec4d54798578fd5623a11a0544f785322526bfaa99db6b7b5fd2 to build tracker '/tmp/pip-req-tracker-fu8cmtyq'
2021-07-31T04:36:35,633     Running setup.py (path:/tmp/pip-wheel-zrg6gv7u/apples_3dc993316f0a4fc8b164bcad0163009a/setup.py) egg_info for package apples
2021-07-31T04:36:35,635     Created temporary directory: /tmp/pip-pip-egg-info-u39ju498
2021-07-31T04:36:35,636     Running command python setup.py egg_info
2021-07-31T04:36:37,482     running egg_info
2021-07-31T04:36:37,487     creating /tmp/pip-pip-egg-info-u39ju498/apples.egg-info
2021-07-31T04:36:37,490     writing top-level names to /tmp/pip-pip-egg-info-u39ju498/apples.egg-info/top_level.txt
2021-07-31T04:36:37,493     writing requirements to /tmp/pip-pip-egg-info-u39ju498/apples.egg-info/requires.txt
2021-07-31T04:36:37,496     writing dependency_links to /tmp/pip-pip-egg-info-u39ju498/apples.egg-info/dependency_links.txt
2021-07-31T04:36:37,498     writing /tmp/pip-pip-egg-info-u39ju498/apples.egg-info/PKG-INFO
2021-07-31T04:36:37,504     writing manifest file '/tmp/pip-pip-egg-info-u39ju498/apples.egg-info/SOURCES.txt'
2021-07-31T04:36:37,881     reading manifest file '/tmp/pip-pip-egg-info-u39ju498/apples.egg-info/SOURCES.txt'
2021-07-31T04:36:37,884     reading manifest template 'MANIFEST.in'
2021-07-31T04:36:37,897     writing manifest file '/tmp/pip-pip-egg-info-u39ju498/apples.egg-info/SOURCES.txt'
2021-07-31T04:36:38,029   Source in /tmp/pip-wheel-zrg6gv7u/apples_3dc993316f0a4fc8b164bcad0163009a has version 2.0.5, which satisfies requirement apples==2.0.5 from https://files.pythonhosted.org/packages/9b/34/8c91e8ab63b3a3a38fbdb91fcadcc1512bd74ad4b74782ceeba9e04043db/apples-2.0.5.tar.gz#sha256=6dc147168b6cec4d54798578fd5623a11a0544f785322526bfaa99db6b7b5fd2
2021-07-31T04:36:38,031   Removed apples==2.0.5 from https://files.pythonhosted.org/packages/9b/34/8c91e8ab63b3a3a38fbdb91fcadcc1512bd74ad4b74782ceeba9e04043db/apples-2.0.5.tar.gz#sha256=6dc147168b6cec4d54798578fd5623a11a0544f785322526bfaa99db6b7b5fd2 from build tracker '/tmp/pip-req-tracker-fu8cmtyq'
2021-07-31T04:36:38,039 Created temporary directory: /tmp/pip-unpack-zehb37wt
2021-07-31T04:36:38,040 Building wheels for collected packages: apples
2021-07-31T04:36:38,049   Created temporary directory: /tmp/pip-wheel-dt6dgs67
2021-07-31T04:36:38,050   Building wheel for apples (setup.py): started
2021-07-31T04:36:38,050   Destination directory: /tmp/pip-wheel-dt6dgs67
2021-07-31T04:36:38,051   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zrg6gv7u/apples_3dc993316f0a4fc8b164bcad0163009a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zrg6gv7u/apples_3dc993316f0a4fc8b164bcad0163009a/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-dt6dgs67
2021-07-31T04:36:39,922   running bdist_wheel
2021-07-31T04:36:39,936   running build
2021-07-31T04:36:39,937   running build_py
2021-07-31T04:36:40,281   creating build
2021-07-31T04:36:40,282   creating build/lib
2021-07-31T04:36:40,287   creating build/lib/apples
2021-07-31T04:36:40,289   copying apples/Subtree.py -> build/lib/apples
2021-07-31T04:36:40,294   copying apples/PoolRepresentativeWorker.py -> build/lib/apples
2021-07-31T04:36:40,298   copying apples/fasta2dic.py -> build/lib/apples
2021-07-31T04:36:40,302   copying apples/OLS.py -> build/lib/apples
2021-07-31T04:36:40,306   copying apples/PrioritySet.py -> build/lib/apples
2021-07-31T04:36:40,310   copying apples/BME.py -> build/lib/apples
2021-07-31T04:36:40,316   copying apples/OptionsBasic.py -> build/lib/apples
2021-07-31T04:36:40,321   copying apples/prepareTree.py -> build/lib/apples
2021-07-31T04:36:40,327   copying apples/OptionsRun.py -> build/lib/apples
2021-07-31T04:36:40,332   copying apples/Reference.py -> build/lib/apples
2021-07-31T04:36:40,337   copying apples/Algorithm.py -> build/lib/apples
2021-07-31T04:36:40,341   copying apples/BE.py -> build/lib/apples
2021-07-31T04:36:40,345   copying apples/OptionsBuild.py -> build/lib/apples
2021-07-31T04:36:40,349   copying apples/distance.py -> build/lib/apples
2021-07-31T04:36:40,354   copying apples/FM.py -> build/lib/apples
2021-07-31T04:36:40,359   copying apples/jutil.py -> build/lib/apples
2021-07-31T04:36:40,364   copying apples/version.py -> build/lib/apples
2021-07-31T04:36:40,369   copying apples/reestimateBackbone.py -> build/lib/apples
2021-07-31T04:36:40,374   copying apples/__init__.py -> build/lib/apples
2021-07-31T04:36:40,378   copying apples/PoolQueryWorker.py -> build/lib/apples
2021-07-31T04:36:40,382   copying apples/util.py -> build/lib/apples
2021-07-31T04:36:40,387   creating build/lib/apples/tools
2021-07-31T04:36:40,388   copying apples/tools/__init__.py -> build/lib/apples/tools
2021-07-31T04:36:40,391   running egg_info
2021-07-31T04:36:40,419   writing requirements to apples.egg-info/requires.txt
2021-07-31T04:36:40,421   writing dependency_links to apples.egg-info/dependency_links.txt
2021-07-31T04:36:40,423   writing apples.egg-info/PKG-INFO
2021-07-31T04:36:40,428   writing top-level names to apples.egg-info/top_level.txt
2021-07-31T04:36:40,440   reading manifest file 'apples.egg-info/SOURCES.txt'
2021-07-31T04:36:40,445   reading manifest template 'MANIFEST.in'
2021-07-31T04:36:40,459   writing manifest file 'apples.egg-info/SOURCES.txt'
2021-07-31T04:36:40,464   copying apples/tools/FastTree-darwin -> build/lib/apples/tools
2021-07-31T04:36:40,553   copying apples/tools/FastTree-linux -> build/lib/apples/tools
2021-07-31T04:36:40,596   copying apples/tools/FastTree.exe -> build/lib/apples/tools
2021-07-31T04:36:40,634   running build_scripts
2021-07-31T04:36:40,635   creating build/scripts-3.5
2021-07-31T04:36:40,638   copying and adjusting run_apples.py -> build/scripts-3.5
2021-07-31T04:36:40,643   copying and adjusting build_applesdtb.py -> build/scripts-3.5
2021-07-31T04:36:40,645   changing mode of build/scripts-3.5/run_apples.py from 644 to 755
2021-07-31T04:36:40,647   changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755
2021-07-31T04:36:40,659   installing to build/bdist.linux-armv7l/wheel
2021-07-31T04:36:40,660   running install
2021-07-31T04:36:40,664   running install_lib
2021-07-31T04:36:40,672   creating build/bdist.linux-armv7l
2021-07-31T04:36:40,673   creating build/bdist.linux-armv7l/wheel
2021-07-31T04:36:40,677   creating build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,679   copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,683   copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,687   copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,692   copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,696   copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,700   copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,704   copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,710   copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,715   copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,721   copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,726   copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,732   copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,737   copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,742   copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,748   copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,752   copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,756   copying build/lib/apples/version.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,760   copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,764   copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,771   creating build/bdist.linux-armv7l/wheel/apples/tools
2021-07-31T04:36:40,773   copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools
2021-07-31T04:36:40,809   copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools
2021-07-31T04:36:40,900   copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools
2021-07-31T04:36:40,939   copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools
2021-07-31T04:36:40,942   copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,946   copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples
2021-07-31T04:36:40,950   running install_egg_info
2021-07-31T04:36:40,978   Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.5-py3.5.egg-info
2021-07-31T04:36:41,005   running install_scripts
2021-07-31T04:36:41,142   creating build/bdist.linux-armv7l/wheel/apples-2.0.5.data
2021-07-31T04:36:41,143   creating build/bdist.linux-armv7l/wheel/apples-2.0.5.data/scripts
2021-07-31T04:36:41,145   copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.5.data/scripts
2021-07-31T04:36:41,149   copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.5.data/scripts
2021-07-31T04:36:41,154   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.5.data/scripts/build_applesdtb.py to 755
2021-07-31T04:36:41,154   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.5.data/scripts/run_apples.py to 755
2021-07-31T04:36:41,200   creating build/bdist.linux-armv7l/wheel/apples-2.0.5.dist-info/WHEEL
2021-07-31T04:36:42,054   Building wheel for apples (setup.py): finished with status 'done'
2021-07-31T04:36:42,070   Created wheel for apples: filename=apples-2.0.5-py3-none-any.whl size=765750 sha256=fccf11e1d16b02860894ff2cffa4f4676554902fdc6851ee2f224bf9724c4fcf
2021-07-31T04:36:42,071   Stored in directory: /tmp/pip-ephem-wheel-cache-2sgd490s/wheels/c9/32/c6/06fa09540ab00b2724ca28d24d7828dee87cdd4ba3ebbae538
2021-07-31T04:36:42,089 Successfully built apples
2021-07-31T04:36:42,227 Removed build tracker: '/tmp/pip-req-tracker-fu8cmtyq'