2021-07-31T08:35:24,861 Created temporary directory: /tmp/pip-ephem-wheel-cache-vkwkm8xa
2021-07-31T08:35:24,868 Created temporary directory: /tmp/pip-req-tracker-vm_435p8
2021-07-31T08:35:24,868 Initialized build tracking at /tmp/pip-req-tracker-vm_435p8
2021-07-31T08:35:24,869 Created build tracker: /tmp/pip-req-tracker-vm_435p8
2021-07-31T08:35:24,869 Entered build tracker: /tmp/pip-req-tracker-vm_435p8
2021-07-31T08:35:24,871 Created temporary directory: /tmp/pip-wheel-q5ttudew
2021-07-31T08:35:24,926 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-31T08:35:24,927 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-31T08:35:24,928 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-31T08:35:24,929 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-31T08:35:24,929 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-31T08:35:24,932 WARNING: Url '/alphafold2mmopt/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T08:35:24,933 WARNING: Url 't/alphafold2mmopt/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T08:35:24,933 WARNING: Url 'm/alphafold2mmopt/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T08:35:24,934 WARNING: Url 'p/alphafold2mmopt/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-07-31T08:35:24,936 1 location(s) to search for versions of alphafold2mmopt:
2021-07-31T08:35:24,936 * https://pypi.org/simple/alphafold2mmopt/
2021-07-31T08:35:24,936 Fetching project page and analyzing links: https://pypi.org/simple/alphafold2mmopt/
2021-07-31T08:35:24,938 Getting page https://pypi.org/simple/alphafold2mmopt/
2021-07-31T08:35:24,942 Found index url https://pypi.org/simple
2021-07-31T08:35:25,263   Found link https://files.pythonhosted.org/packages/ee/7a/724e81856a5e7652eb23392c6a8dc04c2b5c5e8672f39646a8b343acac18/alphafold2mmopt-0.1.1.tar.gz#sha256=4c19b892c810f41bdf1844b63607c0296e3268cf0928f425d798a6c4beee7e0e (from https://pypi.org/simple/alphafold2mmopt/), version: 0.1.1
2021-07-31T08:35:25,292 Given no hashes to check 1 links for project 'alphafold2mmopt': discarding no candidates
2021-07-31T08:35:25,324 Collecting alphafold2mmopt==0.1.1
2021-07-31T08:35:25,327   Created temporary directory: /tmp/pip-unpack-tiu96df0
2021-07-31T08:35:25,414   Downloading alphafold2mmopt-0.1.1.tar.gz (52 kB)
2021-07-31T08:35:25,609   Added alphafold2mmopt==0.1.1 from https://files.pythonhosted.org/packages/ee/7a/724e81856a5e7652eb23392c6a8dc04c2b5c5e8672f39646a8b343acac18/alphafold2mmopt-0.1.1.tar.gz#sha256=4c19b892c810f41bdf1844b63607c0296e3268cf0928f425d798a6c4beee7e0e to build tracker '/tmp/pip-req-tracker-vm_435p8'
2021-07-31T08:35:25,612     Running setup.py (path:/tmp/pip-wheel-q5ttudew/alphafold2mmopt_333877a9349b4ae0907e57773e50b4e7/setup.py) egg_info for package alphafold2mmopt
2021-07-31T08:35:25,615     Created temporary directory: /tmp/pip-pip-egg-info-n5ikhna4
2021-07-31T08:35:25,616     Running command python setup.py egg_info
2021-07-31T08:35:27,470     running egg_info
2021-07-31T08:35:27,475     creating /tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info
2021-07-31T08:35:27,477     writing /tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/PKG-INFO
2021-07-31T08:35:27,481     writing top-level names to /tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/top_level.txt
2021-07-31T08:35:27,483     writing entry points to /tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/entry_points.txt
2021-07-31T08:35:27,485     writing requirements to /tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/requires.txt
2021-07-31T08:35:27,487     writing dependency_links to /tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/dependency_links.txt
2021-07-31T08:35:27,492     writing manifest file '/tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/SOURCES.txt'
2021-07-31T08:35:27,835     reading manifest file '/tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/SOURCES.txt'
2021-07-31T08:35:27,838     reading manifest template 'MANIFEST.in'
2021-07-31T08:35:27,857     warning: no files found matching '*.txt' under directory 'alphafold2mmopt'
2021-07-31T08:35:27,864     writing manifest file '/tmp/pip-pip-egg-info-n5ikhna4/alphafold2mmopt.egg-info/SOURCES.txt'
2021-07-31T08:35:28,003   Source in /tmp/pip-wheel-q5ttudew/alphafold2mmopt_333877a9349b4ae0907e57773e50b4e7 has version 0.1.1, which satisfies requirement alphafold2mmopt==0.1.1 from https://files.pythonhosted.org/packages/ee/7a/724e81856a5e7652eb23392c6a8dc04c2b5c5e8672f39646a8b343acac18/alphafold2mmopt-0.1.1.tar.gz#sha256=4c19b892c810f41bdf1844b63607c0296e3268cf0928f425d798a6c4beee7e0e
2021-07-31T08:35:28,004   Removed alphafold2mmopt==0.1.1 from https://files.pythonhosted.org/packages/ee/7a/724e81856a5e7652eb23392c6a8dc04c2b5c5e8672f39646a8b343acac18/alphafold2mmopt-0.1.1.tar.gz#sha256=4c19b892c810f41bdf1844b63607c0296e3268cf0928f425d798a6c4beee7e0e from build tracker '/tmp/pip-req-tracker-vm_435p8'
2021-07-31T08:35:28,012 Created temporary directory: /tmp/pip-unpack-0s3rvhb5
2021-07-31T08:35:28,013 Building wheels for collected packages: alphafold2mmopt
2021-07-31T08:35:28,022   Created temporary directory: /tmp/pip-wheel-nxpcgxci
2021-07-31T08:35:28,023   Building wheel for alphafold2mmopt (setup.py): started
2021-07-31T08:35:28,024   Destination directory: /tmp/pip-wheel-nxpcgxci
2021-07-31T08:35:28,024   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-q5ttudew/alphafold2mmopt_333877a9349b4ae0907e57773e50b4e7/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-q5ttudew/alphafold2mmopt_333877a9349b4ae0907e57773e50b4e7/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nxpcgxci
2021-07-31T08:35:29,936   running bdist_wheel
2021-07-31T08:35:29,950   running build
2021-07-31T08:35:29,951   running build_py
2021-07-31T08:35:30,289   creating build
2021-07-31T08:35:30,290   creating build/lib
2021-07-31T08:35:30,291   creating build/lib/alphafold2mmopt
2021-07-31T08:35:30,294   copying alphafold2mmopt/run.py -> build/lib/alphafold2mmopt
2021-07-31T08:35:30,298   copying alphafold2mmopt/__init__.py -> build/lib/alphafold2mmopt
2021-07-31T08:35:30,302   creating build/lib/alphafold2mmopt/common
2021-07-31T08:35:30,304   copying alphafold2mmopt/common/protein.py -> build/lib/alphafold2mmopt/common
2021-07-31T08:35:30,309   copying alphafold2mmopt/common/__init__.py -> build/lib/alphafold2mmopt/common
2021-07-31T08:35:30,312   copying alphafold2mmopt/common/residue_constants.py -> build/lib/alphafold2mmopt/common
2021-07-31T08:35:30,324   creating build/lib/alphafold2mmopt/relax
2021-07-31T08:35:30,328   copying alphafold2mmopt/relax/utils.py -> build/lib/alphafold2mmopt/relax
2021-07-31T08:35:30,335   copying alphafold2mmopt/relax/cleanup.py -> build/lib/alphafold2mmopt/relax
2021-07-31T08:35:30,340   copying alphafold2mmopt/relax/relax.py -> build/lib/alphafold2mmopt/relax
2021-07-31T08:35:30,345   copying alphafold2mmopt/relax/__init__.py -> build/lib/alphafold2mmopt/relax
2021-07-31T08:35:30,349   copying alphafold2mmopt/relax/amber_minimize.py -> build/lib/alphafold2mmopt/relax
2021-07-31T08:35:30,358   creating build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,360   copying alphafold2mmopt/model/r3.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,367   copying alphafold2mmopt/model/all_atom.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,376   copying alphafold2mmopt/model/utils.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,383   copying alphafold2mmopt/model/quat_affine.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,391   copying alphafold2mmopt/model/__init__.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,397   copying alphafold2mmopt/model/common_modules.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,401   copying alphafold2mmopt/model/folding.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,409   copying alphafold2mmopt/model/prng.py -> build/lib/alphafold2mmopt/model
2021-07-31T08:35:30,412   running egg_info
2021-07-31T08:35:30,440   writing top-level names to alphafold2mmopt.egg-info/top_level.txt
2021-07-31T08:35:30,442   writing dependency_links to alphafold2mmopt.egg-info/dependency_links.txt
2021-07-31T08:35:30,444   writing entry points to alphafold2mmopt.egg-info/entry_points.txt
2021-07-31T08:35:30,447   writing alphafold2mmopt.egg-info/PKG-INFO
2021-07-31T08:35:30,451   writing requirements to alphafold2mmopt.egg-info/requires.txt
2021-07-31T08:35:30,465   reading manifest file 'alphafold2mmopt.egg-info/SOURCES.txt'
2021-07-31T08:35:30,469   reading manifest template 'MANIFEST.in'
2021-07-31T08:35:30,490   warning: no files found matching '*.txt' under directory 'alphafold2mmopt'
2021-07-31T08:35:30,497   writing manifest file 'alphafold2mmopt.egg-info/SOURCES.txt'
2021-07-31T08:35:30,513   installing to build/bdist.linux-armv7l/wheel
2021-07-31T08:35:30,513   running install
2021-07-31T08:35:30,515   running install_lib
2021-07-31T08:35:30,522   creating build/bdist.linux-armv7l
2021-07-31T08:35:30,523   creating build/bdist.linux-armv7l/wheel
2021-07-31T08:35:30,527   creating build/bdist.linux-armv7l/wheel/alphafold2mmopt
2021-07-31T08:35:30,530   creating build/bdist.linux-armv7l/wheel/alphafold2mmopt/common
2021-07-31T08:35:30,532   copying build/lib/alphafold2mmopt/common/protein.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/common
2021-07-31T08:35:30,537   copying build/lib/alphafold2mmopt/common/__init__.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/common
2021-07-31T08:35:30,541   copying build/lib/alphafold2mmopt/common/residue_constants.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/common
2021-07-31T08:35:30,551   copying build/lib/alphafold2mmopt/run.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt
2021-07-31T08:35:30,558   creating build/bdist.linux-armv7l/wheel/alphafold2mmopt/relax
2021-07-31T08:35:30,561   copying build/lib/alphafold2mmopt/relax/utils.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/relax
2021-07-31T08:35:30,566   copying build/lib/alphafold2mmopt/relax/cleanup.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/relax
2021-07-31T08:35:30,570   copying build/lib/alphafold2mmopt/relax/relax.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/relax
2021-07-31T08:35:30,574   copying build/lib/alphafold2mmopt/relax/__init__.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/relax
2021-07-31T08:35:30,578   copying build/lib/alphafold2mmopt/relax/amber_minimize.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/relax
2021-07-31T08:35:30,586   copying build/lib/alphafold2mmopt/__init__.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt
2021-07-31T08:35:30,592   creating build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,594   copying build/lib/alphafold2mmopt/model/r3.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,601   copying build/lib/alphafold2mmopt/model/all_atom.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,611   copying build/lib/alphafold2mmopt/model/utils.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,615   copying build/lib/alphafold2mmopt/model/quat_affine.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,621   copying build/lib/alphafold2mmopt/model/__init__.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,626   copying build/lib/alphafold2mmopt/model/common_modules.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,631   copying build/lib/alphafold2mmopt/model/folding.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,641   copying build/lib/alphafold2mmopt/model/prng.py -> build/bdist.linux-armv7l/wheel/alphafold2mmopt/model
2021-07-31T08:35:30,645   running install_egg_info
2021-07-31T08:35:30,661   Copying alphafold2mmopt.egg-info to build/bdist.linux-armv7l/wheel/alphafold2mmopt-0.1.1-py3.5.egg-info
2021-07-31T08:35:30,688   running install_scripts
2021-07-31T08:35:30,891   creating build/bdist.linux-armv7l/wheel/alphafold2mmopt-0.1.1.dist-info/WHEEL
2021-07-31T08:35:31,202   Building wheel for alphafold2mmopt (setup.py): finished with status 'done'
2021-07-31T08:35:31,207   Created wheel for alphafold2mmopt: filename=alphafold2mmopt-0.1.1-py3-none-any.whl size=62463 sha256=dca738b16d325cbd24716b88dbea75a2f50802c42ddd5760630b7d6a4a977540
2021-07-31T08:35:31,207   Stored in directory: /tmp/pip-ephem-wheel-cache-vkwkm8xa/wheels/8e/39/c7/6159a93db65b28ae47f10c36a85f8e01bacea2c546e4a914d4
2021-07-31T08:35:31,224 Successfully built alphafold2mmopt
2021-07-31T08:35:31,240 Removed build tracker: '/tmp/pip-req-tracker-vm_435p8'