2021-07-31T10:12:51,139 Created temporary directory: /tmp/pip-ephem-wheel-cache-pk5jzw_w 2021-07-31T10:12:51,145 Created temporary directory: /tmp/pip-req-tracker-c482e4tk 2021-07-31T10:12:51,146 Initialized build tracking at /tmp/pip-req-tracker-c482e4tk 2021-07-31T10:12:51,147 Created build tracker: /tmp/pip-req-tracker-c482e4tk 2021-07-31T10:12:51,147 Entered build tracker: /tmp/pip-req-tracker-c482e4tk 2021-07-31T10:12:51,149 Created temporary directory: /tmp/pip-wheel-06u4fghh 2021-07-31T10:12:51,213 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-31T10:12:51,214 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-31T10:12:51,215 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-31T10:12:51,215 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-31T10:12:51,216 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-31T10:12:51,219 WARNING: Url '/frag-pele/' is ignored. It is either a non-existing path or lacks a specific scheme. 2021-07-31T10:12:51,220 WARNING: Url 't/frag-pele/' is ignored. It is either a non-existing path or lacks a specific scheme. 2021-07-31T10:12:51,220 WARNING: Url 'm/frag-pele/' is ignored. It is either a non-existing path or lacks a specific scheme. 2021-07-31T10:12:51,221 WARNING: Url 'p/frag-pele/' is ignored. It is either a non-existing path or lacks a specific scheme. 2021-07-31T10:12:51,222 1 location(s) to search for versions of frag-pele: 2021-07-31T10:12:51,222 * https://pypi.org/simple/frag-pele/ 2021-07-31T10:12:51,223 Fetching project page and analyzing links: https://pypi.org/simple/frag-pele/ 2021-07-31T10:12:51,225 Getting page https://pypi.org/simple/frag-pele/ 2021-07-31T10:12:51,229 Found index url https://pypi.org/simple 2021-07-31T10:12:51,576 Found link https://files.pythonhosted.org/packages/04/68/6d6d1e835589a4b25dc8606c3afc9365f6391d2f8deaf20a505280a1d1f4/frag_pele-1.1.0.tar.gz#sha256=dd58277af0db3fa42c95f96b546fcc3b5ea844d36d2626987dd133411f8bf0d3 (from https://pypi.org/simple/frag-pele/), version: 1.1.0 2021-07-31T10:12:51,578 Found link https://files.pythonhosted.org/packages/d0/f0/86387845e4a8f6e60d4a4c22522f839fc3beda80130663bd03382b28a1f4/frag_pele-1.1.0.1.tar.gz#sha256=c489e75d2c39a7d5aebf4c1b62eee5ee379c9de7801588146f19244877117ec0 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.1 2021-07-31T10:12:51,579 Found link https://files.pythonhosted.org/packages/6f/ac/a7720cdad2c4885cb41e28005d05cd1897364e24aa1d2c5ca777e8f74536/frag_pele-1.1.0.2.tar.gz#sha256=a2c7046a9bd88a952d6abcccbee64e400ec6f55cc5e59cd2f929f9bf5f925b36 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.2 2021-07-31T10:12:51,580 Found link https://files.pythonhosted.org/packages/b5/51/ed7816753a4eeed924b5890507ebcfe9a413d63070b08ac248f683cefac2/frag_pele-1.1.0.3.tar.gz#sha256=520f8442ed7f0f9d0508d8cb737fc530584f92af11ccf5de499b756ed5406272 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.3 2021-07-31T10:12:51,580 Found link https://files.pythonhosted.org/packages/61/ea/5ce7db4a2a80a6869779d2aa19a9a3218a25787860ce16c0765e83bb01fe/frag_pele-1.1.0.4.tar.gz#sha256=02eeff856281090a6b00a9f57a887c51dc012936068b74908a6c00ab5109f034 (from https://pypi.org/simple/frag-pele/), version: 1.1.0.4 2021-07-31T10:12:51,581 Found link https://files.pythonhosted.org/packages/ed/d4/6648da9cb9257d09439502d43db14a4942c4d1dd35d40377d4ce46c3c466/frag_pele-2.1.1.tar.gz#sha256=ef6b789f430e2222a5e0627e64b503dd74b4c66f0321e35daeab2d856e314d0a (from https://pypi.org/simple/frag-pele/), version: 2.1.1 2021-07-31T10:12:51,582 Found link https://files.pythonhosted.org/packages/ee/f5/0400b73f5f6be4e6fb5a1792db7698af6084f6930a9abeb89cb1535f1bdd/frag_pele-2.1.2.tar.gz#sha256=625300b3f32c23c7e8a14c263eded89b7adf11893eb85e4718800ee2f9d89a54 (from https://pypi.org/simple/frag-pele/), version: 2.1.2 2021-07-31T10:12:51,583 Found link https://files.pythonhosted.org/packages/90/35/ace23ab99bc3e98a8269a3a3d33e8e717768ff6db75754077efd94323e16/frag_pele-2.1.3.tar.gz#sha256=7411cc49a09a9565a7713d5554d57957e4dc8457361f6f8ba8b5ab53a4bca573 (from https://pypi.org/simple/frag-pele/), version: 2.1.3 2021-07-31T10:12:51,584 Found link https://files.pythonhosted.org/packages/79/a5/050e2ac47772096b1906f154e7c704d2e3d121823fe04772618f4e288289/frag_pele-2.2.1.tar.gz#sha256=2960112e018694cb1ede57429964732a12fe6a485d11ee542ef70d48e650fb37 (from https://pypi.org/simple/frag-pele/), version: 2.2.1 2021-07-31T10:12:51,585 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/4a/93/046a93fe08f3f658c27530aadccb6b6e9e9a1cb25aae99d86940af5adce0/frag_pele-3.0.0-py3-none-any.whl#sha256=1793462d15783e1f0cf560b62550e3dfd2d27b4ee54d8ad026a23114f0386b42 (from https://pypi.org/simple/frag-pele/) 2021-07-31T10:12:51,586 Found link https://files.pythonhosted.org/packages/33/76/a0f81fd6c76ea115357677bb529efebf25ae6b905c2bcccb17a2f6f1718b/frag_pele-3.0.0.tar.gz#sha256=540ee2c709f070752bdebe6cf7af110dd071287a01611bf76a2299be30c2697d (from https://pypi.org/simple/frag-pele/), version: 3.0.0 2021-07-31T10:12:51,587 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/94/4c/1549b7349fec873e2c06fae6013fbcfcb2bd626e06d864b313d01d62d955/frag_pele-3.1.0-py3-none-any.whl#sha256=398507cf87b710bae4a6b7ad57ad77928c05a537c15b4d36d25e7f876a571f30 (from https://pypi.org/simple/frag-pele/) 2021-07-31T10:12:51,587 Found link https://files.pythonhosted.org/packages/5d/e6/51b6246b18f137175acd3ba628369d5608cff0de6b73bba3e8e6cd24a031/frag_pele-3.1.0.tar.gz#sha256=d8ef0d39ae6b71825be83c189253754d68c6307fdfef9633fcc11e4dc5078721 (from https://pypi.org/simple/frag-pele/), version: 3.1.0 2021-07-31T10:12:51,588 Skipping link: No binaries permitted for frag-pele: https://files.pythonhosted.org/packages/16/15/e3132e52417b05a0c88ed42ea62498b2641052cf42e6a42b4d204754c9ae/frag_pele-3.1.1-py3-none-any.whl#sha256=476b2ce89142c0f2b96593cd4d190ba4f7e1918aee7e623a827b6c201041b855 (from https://pypi.org/simple/frag-pele/) 2021-07-31T10:12:51,589 Found link https://files.pythonhosted.org/packages/cc/2d/7ff1c9faf26cf8824380629807559002692ffef0b42dddbc1823b9abc521/frag_pele-3.1.1.tar.gz#sha256=f3d9a1c5858167db0d6d6094175627f5232a531c0dafc06434c2f57e68719e1a (from https://pypi.org/simple/frag-pele/), version: 3.1.1 2021-07-31T10:12:51,624 Given no hashes to check 1 links for project 'frag-pele': discarding no candidates 2021-07-31T10:12:51,656 Collecting frag-pele==3.1.0 2021-07-31T10:12:51,660 Created temporary directory: /tmp/pip-unpack-xxp69ulj 2021-07-31T10:12:51,745 Downloading frag_pele-3.1.0.tar.gz (162 kB) 2021-07-31T10:12:52,367 Added frag-pele==3.1.0 from https://files.pythonhosted.org/packages/5d/e6/51b6246b18f137175acd3ba628369d5608cff0de6b73bba3e8e6cd24a031/frag_pele-3.1.0.tar.gz#sha256=d8ef0d39ae6b71825be83c189253754d68c6307fdfef9633fcc11e4dc5078721 to build tracker '/tmp/pip-req-tracker-c482e4tk' 2021-07-31T10:12:52,369 Running setup.py (path:/tmp/pip-wheel-06u4fghh/frag-pele_5efcf0b855834d238889755186a4e865/setup.py) egg_info for package frag-pele 2021-07-31T10:12:52,370 Created temporary directory: /tmp/pip-pip-egg-info-x4ze37yx 2021-07-31T10:12:52,371 Running command python setup.py egg_info 2021-07-31T10:12:58,133 running egg_info 2021-07-31T10:12:58,139 creating /tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info 2021-07-31T10:12:58,144 writing /tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info/PKG-INFO 2021-07-31T10:12:58,149 writing requirements to /tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info/requires.txt 2021-07-31T10:12:58,152 writing top-level names to /tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info/top_level.txt 2021-07-31T10:12:58,154 writing dependency_links to /tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info/dependency_links.txt 2021-07-31T10:12:58,157 writing manifest file '/tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info/SOURCES.txt' 2021-07-31T10:12:58,565 reading manifest file '/tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info/SOURCES.txt' 2021-07-31T10:12:58,568 reading manifest template 'MANIFEST.in' 2021-07-31T10:12:58,575 warning: no files found matching 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/*' 2021-07-31T10:12:58,585 writing manifest file '/tmp/pip-pip-egg-info-x4ze37yx/frag_pele.egg-info/SOURCES.txt' 2021-07-31T10:12:58,845 Source in /tmp/pip-wheel-06u4fghh/frag-pele_5efcf0b855834d238889755186a4e865 has version 3.1.0, which satisfies requirement frag-pele==3.1.0 from https://files.pythonhosted.org/packages/5d/e6/51b6246b18f137175acd3ba628369d5608cff0de6b73bba3e8e6cd24a031/frag_pele-3.1.0.tar.gz#sha256=d8ef0d39ae6b71825be83c189253754d68c6307fdfef9633fcc11e4dc5078721 2021-07-31T10:12:58,848 Removed frag-pele==3.1.0 from https://files.pythonhosted.org/packages/5d/e6/51b6246b18f137175acd3ba628369d5608cff0de6b73bba3e8e6cd24a031/frag_pele-3.1.0.tar.gz#sha256=d8ef0d39ae6b71825be83c189253754d68c6307fdfef9633fcc11e4dc5078721 from build tracker '/tmp/pip-req-tracker-c482e4tk' 2021-07-31T10:12:58,858 Created temporary directory: /tmp/pip-unpack-118h93sk 2021-07-31T10:12:58,859 Building wheels for collected packages: frag-pele 2021-07-31T10:12:58,867 Created temporary directory: /tmp/pip-wheel-2dj5nbhh 2021-07-31T10:12:58,868 Building wheel for frag-pele (setup.py): started 2021-07-31T10:12:58,869 Destination directory: /tmp/pip-wheel-2dj5nbhh 2021-07-31T10:12:58,870 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-06u4fghh/frag-pele_5efcf0b855834d238889755186a4e865/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-06u4fghh/frag-pele_5efcf0b855834d238889755186a4e865/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2dj5nbhh 2021-07-31T10:13:02,145 running bdist_wheel 2021-07-31T10:13:02,156 running build 2021-07-31T10:13:02,157 running build_py 2021-07-31T10:13:02,558 creating build 2021-07-31T10:13:02,559 creating build/lib 2021-07-31T10:13:02,568 creating build/lib/frag_pele 2021-07-31T10:13:02,571 copying frag_pele/main.py -> build/lib/frag_pele 2021-07-31T10:13:02,584 copying frag_pele/constants.py -> build/lib/frag_pele 2021-07-31T10:13:02,590 copying frag_pele/__init__.py -> build/lib/frag_pele 2021-07-31T10:13:02,594 copying frag_pele/serie_handler.py -> build/lib/frag_pele 2021-07-31T10:13:02,599 creating build/lib/frag_pele/Banner 2021-07-31T10:13:02,601 copying frag_pele/Banner/Detector.py -> build/lib/frag_pele/Banner 2021-07-31T10:13:02,605 copying frag_pele/Banner/__init__.py -> build/lib/frag_pele/Banner 2021-07-31T10:13:02,610 creating build/lib/frag_pele/Analysis 2021-07-31T10:13:02,612 copying frag_pele/Analysis/backtrackConnectivity.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,616 copying frag_pele/Analysis/forcefield_analysis.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,621 copying frag_pele/Analysis/output_files.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,625 copying frag_pele/Analysis/__init__.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,628 copying frag_pele/Analysis/get_plots.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,633 copying frag_pele/Analysis/rmsd_computer.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,639 copying frag_pele/Analysis/interaction_detector.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,644 copying frag_pele/Analysis/sidecahins_analyser.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,649 copying frag_pele/Analysis/backtrackFragTrajectory.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,655 copying frag_pele/Analysis/analyser.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,661 copying frag_pele/Analysis/compute_atom_atom_distance.py -> build/lib/frag_pele/Analysis 2021-07-31T10:13:02,669 creating build/lib/frag_pele/Growing 2021-07-31T10:13:02,672 copying frag_pele/Growing/simulations_linker.py -> build/lib/frag_pele/Growing 2021-07-31T10:13:02,677 copying frag_pele/Growing/template_fragmenter.py -> build/lib/frag_pele/Growing 2021-07-31T10:13:02,686 copying frag_pele/Growing/bestStructs.py -> build/lib/frag_pele/Growing 2021-07-31T10:13:02,691 copying frag_pele/Growing/__init__.py -> build/lib/frag_pele/Growing 2021-07-31T10:13:02,695 copying frag_pele/Growing/add_fragment_from_pdbs.py -> build/lib/frag_pele/Growing 2021-07-31T10:13:02,705 copying frag_pele/Growing/template_selector.py -> build/lib/frag_pele/Growing 2021-07-31T10:13:02,715 creating build/lib/frag_pele/Helpers 2021-07-31T10:13:02,716 copying frag_pele/Helpers/helpers.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,721 copying frag_pele/Helpers/clusterizer.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,724 copying frag_pele/Helpers/find_dihedrals.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,729 copying frag_pele/Helpers/plop_rot_temp.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,733 copying frag_pele/Helpers/templatize.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,737 copying frag_pele/Helpers/checker.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,740 copying frag_pele/Helpers/__init__.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,743 copying frag_pele/Helpers/create_templates.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,748 copying frag_pele/Helpers/constraints.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,753 copying frag_pele/Helpers/runner.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,757 copying frag_pele/Helpers/center_of_mass.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,765 copying frag_pele/Helpers/correct_fragment_names.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,768 copying frag_pele/Helpers/folder_handler.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,772 copying frag_pele/Helpers/check_constants.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,777 copying frag_pele/Helpers/conda_deploy.py -> build/lib/frag_pele/Helpers 2021-07-31T10:13:02,785 creating build/lib/frag_pele/Covalent 2021-07-31T10:13:02,787 copying frag_pele/Covalent/correct_rotamer_library.py -> build/lib/frag_pele/Covalent 2021-07-31T10:13:02,793 copying frag_pele/Covalent/__init__.py -> build/lib/frag_pele/Covalent 2021-07-31T10:13:02,797 copying frag_pele/Covalent/pdb_corrector.py -> build/lib/frag_pele/Covalent 2021-07-31T10:13:02,802 copying frag_pele/Covalent/prepare_pdb_to_cov_heteroatom.py -> build/lib/frag_pele/Covalent 2021-07-31T10:13:02,807 copying frag_pele/Covalent/correct_pdb_to_covalent_res.py -> build/lib/frag_pele/Covalent 2021-07-31T10:13:02,811 copying frag_pele/Covalent/correct_template_of_backbone_res.py -> build/lib/frag_pele/Covalent 2021-07-31T10:13:02,818 creating build/lib/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:02,821 copying frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/lib/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:02,826 copying frag_pele/PlopRotTemp_S_2017/main.py -> build/lib/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:02,834 copying frag_pele/PlopRotTemp_S_2017/__init__.py -> build/lib/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:02,837 copying frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/lib/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:02,854 creating build/lib/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:02,856 copying frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/lib/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:02,862 copying frag_pele/Growing/AddingFragHelpers/atom_constants.py -> build/lib/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:02,868 copying frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/lib/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:02,875 copying frag_pele/Growing/AddingFragHelpers/__init__.py -> build/lib/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:02,879 creating build/lib/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:02,881 copying frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:02,886 copying frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:02,889 copying frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:02,896 copying frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:02,899 running egg_info 2021-07-31T10:13:02,928 writing dependency_links to frag_pele.egg-info/dependency_links.txt 2021-07-31T10:13:02,931 writing top-level names to frag_pele.egg-info/top_level.txt 2021-07-31T10:13:02,933 writing frag_pele.egg-info/PKG-INFO 2021-07-31T10:13:02,938 writing requirements to frag_pele.egg-info/requires.txt 2021-07-31T10:13:02,960 reading manifest file 'frag_pele.egg-info/SOURCES.txt' 2021-07-31T10:13:02,967 reading manifest template 'MANIFEST.in' 2021-07-31T10:13:02,973 warning: no files found matching 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/*' 2021-07-31T10:13:02,987 writing manifest file 'frag_pele.egg-info/SOURCES.txt' 2021-07-31T10:13:02,995 copying frag_pele/log_configure.ini -> build/lib/frag_pele 2021-07-31T10:13:02,1000 creating build/lib/frag_pele/Templates 2021-07-31T10:13:03,002 copying frag_pele/Templates/constants.py -> build/lib/frag_pele/Templates 2021-07-31T10:13:03,007 copying frag_pele/Templates/control_covalent.conf -> build/lib/frag_pele/Templates 2021-07-31T10:13:03,012 copying frag_pele/Templates/control_off.conf -> build/lib/frag_pele/Templates 2021-07-31T10:13:03,017 copying frag_pele/Templates/control_template.conf -> build/lib/frag_pele/Templates 2021-07-31T10:13:03,024 creating build/lib/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,027 copying frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/lib/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,035 copying frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/lib/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,054 copying frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/lib/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,061 copying frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/lib/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,070 copying frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/lib/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,100 installing to build/bdist.linux-armv7l/wheel 2021-07-31T10:13:03,100 running install 2021-07-31T10:13:03,102 running install_lib 2021-07-31T10:13:03,109 creating build/bdist.linux-armv7l 2021-07-31T10:13:03,110 creating build/bdist.linux-armv7l/wheel 2021-07-31T10:13:03,114 creating build/bdist.linux-armv7l/wheel/frag_pele 2021-07-31T10:13:03,116 copying build/lib/frag_pele/main.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-31T10:13:03,127 copying build/lib/frag_pele/constants.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-31T10:13:03,133 creating build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-31T10:13:03,134 copying build/lib/frag_pele/Templates/constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-31T10:13:03,139 copying build/lib/frag_pele/Templates/control_template.conf -> build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-31T10:13:03,144 copying build/lib/frag_pele/Templates/control_off.conf -> build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-31T10:13:03,150 copying build/lib/frag_pele/Templates/control_covalent.conf -> build/bdist.linux-armv7l/wheel/frag_pele/Templates 2021-07-31T10:13:03,156 copying build/lib/frag_pele/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-31T10:13:03,163 creating build/bdist.linux-armv7l/wheel/frag_pele/Banner 2021-07-31T10:13:03,165 copying build/lib/frag_pele/Banner/Detector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Banner 2021-07-31T10:13:03,170 copying build/lib/frag_pele/Banner/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Banner 2021-07-31T10:13:03,174 creating build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,176 copying build/lib/frag_pele/Analysis/backtrackConnectivity.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,181 copying build/lib/frag_pele/Analysis/forcefield_analysis.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,186 copying build/lib/frag_pele/Analysis/output_files.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,192 copying build/lib/frag_pele/Analysis/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,197 copying build/lib/frag_pele/Analysis/get_plots.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,204 copying build/lib/frag_pele/Analysis/rmsd_computer.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,210 copying build/lib/frag_pele/Analysis/interaction_detector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,215 copying build/lib/frag_pele/Analysis/sidecahins_analyser.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,220 copying build/lib/frag_pele/Analysis/backtrackFragTrajectory.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,226 copying build/lib/frag_pele/Analysis/analyser.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,232 copying build/lib/frag_pele/Analysis/compute_atom_atom_distance.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis 2021-07-31T10:13:03,240 creating build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-31T10:13:03,242 copying build/lib/frag_pele/Growing/simulations_linker.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-31T10:13:03,248 copying build/lib/frag_pele/Growing/template_fragmenter.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-31T10:13:03,257 copying build/lib/frag_pele/Growing/bestStructs.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-31T10:13:03,263 copying build/lib/frag_pele/Growing/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-31T10:13:03,268 creating build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:03,271 copying build/lib/frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:03,277 copying build/lib/frag_pele/Growing/AddingFragHelpers/atom_constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:03,282 copying build/lib/frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:03,289 copying build/lib/frag_pele/Growing/AddingFragHelpers/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers 2021-07-31T10:13:03,292 copying build/lib/frag_pele/Growing/add_fragment_from_pdbs.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-31T10:13:03,301 copying build/lib/frag_pele/Growing/template_selector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing 2021-07-31T10:13:03,305 copying build/lib/frag_pele/log_configure.ini -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-31T10:13:03,313 creating build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,315 copying build/lib/frag_pele/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,321 copying build/lib/frag_pele/Helpers/clusterizer.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,327 copying build/lib/frag_pele/Helpers/find_dihedrals.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,332 copying build/lib/frag_pele/Helpers/plop_rot_temp.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,336 copying build/lib/frag_pele/Helpers/templatize.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,340 copying build/lib/frag_pele/Helpers/checker.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,344 copying build/lib/frag_pele/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,347 copying build/lib/frag_pele/Helpers/create_templates.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,353 copying build/lib/frag_pele/Helpers/constraints.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,360 copying build/lib/frag_pele/Helpers/runner.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,366 copying build/lib/frag_pele/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,373 copying build/lib/frag_pele/Helpers/correct_fragment_names.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,378 copying build/lib/frag_pele/Helpers/folder_handler.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,384 copying build/lib/frag_pele/Helpers/check_constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,389 copying build/lib/frag_pele/Helpers/conda_deploy.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers 2021-07-31T10:13:03,396 creating build/bdist.linux-armv7l/wheel/frag_pele/Covalent 2021-07-31T10:13:03,399 copying build/lib/frag_pele/Covalent/correct_rotamer_library.py -> build/bdist.linux-armv7l/wheel/frag_pele/Covalent 2021-07-31T10:13:03,405 copying build/lib/frag_pele/Covalent/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Covalent 2021-07-31T10:13:03,410 copying build/lib/frag_pele/Covalent/pdb_corrector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Covalent 2021-07-31T10:13:03,416 copying build/lib/frag_pele/Covalent/prepare_pdb_to_cov_heteroatom.py -> build/bdist.linux-armv7l/wheel/frag_pele/Covalent 2021-07-31T10:13:03,423 copying build/lib/frag_pele/Covalent/correct_pdb_to_covalent_res.py -> build/bdist.linux-armv7l/wheel/frag_pele/Covalent 2021-07-31T10:13:03,430 copying build/lib/frag_pele/Covalent/correct_template_of_backbone_res.py -> build/bdist.linux-armv7l/wheel/frag_pele/Covalent 2021-07-31T10:13:03,435 copying build/lib/frag_pele/serie_handler.py -> build/bdist.linux-armv7l/wheel/frag_pele 2021-07-31T10:13:03,443 creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:03,446 copying build/lib/frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:03,451 copying build/lib/frag_pele/PlopRotTemp_S_2017/main.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:03,457 copying build/lib/frag_pele/PlopRotTemp_S_2017/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:03,462 creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,463 copying build/lib/frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,471 copying build/lib/frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,477 copying build/lib/frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,484 copying build/lib/frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,491 copying build/lib/frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param 2021-07-31T10:13:03,508 copying build/lib/frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 2021-07-31T10:13:03,526 creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:03,529 copying build/lib/frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:03,535 copying build/lib/frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:03,539 copying build/lib/frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:03,548 copying build/lib/frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template 2021-07-31T10:13:03,552 running install_egg_info 2021-07-31T10:13:03,574 Copying frag_pele.egg-info to build/bdist.linux-armv7l/wheel/frag_pele-3.1.0-py3.5.egg-info 2021-07-31T10:13:03,596 running install_scripts 2021-07-31T10:13:03,816 creating build/bdist.linux-armv7l/wheel/frag_pele-3.1.0.dist-info/WHEEL 2021-07-31T10:13:04,517 Building wheel for frag-pele (setup.py): finished with status 'done' 2021-07-31T10:13:04,525 Created wheel for frag-pele: filename=frag_pele-3.1.0-py3-none-any.whl size=185626 sha256=9455207f1075adb67362805e3a8593d2a670b5d0e3c593fed14264c0356faad7 2021-07-31T10:13:04,525 Stored in directory: /tmp/pip-ephem-wheel-cache-pk5jzw_w/wheels/33/26/e0/83d2bc51be7cddc3db7b6df8d66f2070bf6759547f663a3378 2021-07-31T10:13:04,548 Successfully built frag-pele 2021-07-31T10:13:04,585 Removed build tracker: '/tmp/pip-req-tracker-c482e4tk'