2021-07-31T13:54:20,717 Created temporary directory: /tmp/pip-ephem-wheel-cache-rwsc4qiy 2021-07-31T13:54:20,720 Created temporary directory: /tmp/pip-req-tracker-myt8bplb 2021-07-31T13:54:20,721 Initialized build tracking at /tmp/pip-req-tracker-myt8bplb 2021-07-31T13:54:20,721 Created build tracker: /tmp/pip-req-tracker-myt8bplb 2021-07-31T13:54:20,721 Entered build tracker: /tmp/pip-req-tracker-myt8bplb 2021-07-31T13:54:20,722 Created temporary directory: /tmp/pip-wheel-pn593396 2021-07-31T13:54:20,750 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-31T13:54:20,751 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-31T13:54:20,751 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-31T13:54:20,751 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-31T13:54:20,752 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-31T13:54:20,755 WARNING: Location '/chemfiles/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-31T13:54:20,755 WARNING: Location 't/chemfiles/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-31T13:54:20,755 WARNING: Location 'm/chemfiles/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-31T13:54:20,755 WARNING: Location 'p/chemfiles/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-31T13:54:20,756 1 location(s) to search for versions of chemfiles: 2021-07-31T13:54:20,756 * https://pypi.org/simple/chemfiles/ 2021-07-31T13:54:20,756 Fetching project page and analyzing links: https://pypi.org/simple/chemfiles/ 2021-07-31T13:54:20,757 Getting page https://pypi.org/simple/chemfiles/ 2021-07-31T13:54:20,758 Found index url https://pypi.org/simple 2021-07-31T13:54:20,865 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/1b/58/d020b8b69e71ddc3e70873095649b454737981f53d3897a32579371e4151/chemfiles-0.8.0-py2.py3-none-macosx_10_9_x86_64.whl#sha256=77fe98200da60e50d56909c1fe170ba0f9bbbba81dc12cf1d1726a7419921593 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,866 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/a6/09/a4c8eabb339b23ab54148077ea09df35656733979169a5dc50d98253f769/chemfiles-0.8.0-py2.py3-none-manylinux1_i686.whl#sha256=036cac2d88100dfb768f0ab5e26914038956e1de901e86810fe6b6a5f28f979c (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,866 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/66/35/f669f1d2155a8397a1553ac0ba831dd64a5968567f8f102b57cb32e5442b/chemfiles-0.8.0-py2.py3-none-manylinux1_x86_64.whl#sha256=7c963c53440c3f190376f19cde99b89ba65a9eab129c901750d92cc8e953ddf5 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,866 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/24/ac/b661e2ace2cef025931de46b24603be4f3a5d336275d3057e99d1f0ad044/chemfiles-0.8.0-py2.py3-none-win32.whl#sha256=7484e664716181da3faa376777c7ff10d19b87dabf7799d207870b9ff2321028 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,867 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/9b/f9/8b07c1ed29ee19c490c78be60711ccc097483954224729d1d7eb67aa9bf1/chemfiles-0.8.0-py2.py3-none-win_amd64.whl#sha256=1b793a3dc963b3be454a6b321ba914b9825cc61afba123d180e71cfeefcda1ed (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,867 Found link https://files.pythonhosted.org/packages/0e/f4/055cefcc4fdbe34b7ba42eadce2f1f107bd646f1d0be258cdf94bc609bc6/chemfiles-0.8.0.tar.gz#sha256=a211f93e165a24473a6e2770db81d99f883c78a14341ab356d1d210b6e045599 (from https://pypi.org/simple/chemfiles/), version: 0.8.0 2021-07-31T13:54:20,867 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/80/49/629e83a3fff73c41a08317f27ad0c24c4e22862940a53fc4532dfae9a895/chemfiles-0.9.1-py2.py3-none-macosx_10_9_x86_64.whl#sha256=a6c478003451282e2d1f8b0e6cf40b7fa88f612535a5f2be3a135d28219f5127 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,867 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/3a/57/6cdb9a0de141e9bdb930dac58d6538e63b4eab81578398c2e086ee0cb6bf/chemfiles-0.9.1-py2.py3-none-manylinux1_i686.whl#sha256=f69ea3c4805e9439619f5ceac5f3c9925c7447d863f4ea9fdadcd065d68665c7 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,868 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/86/e6/236cf566fd37ad3d9671198d0ab25be13299e0728ea9c96ce87de4b76045/chemfiles-0.9.1-py2.py3-none-manylinux1_x86_64.whl#sha256=cc59e1aac87440fed4bcf443d2df3a9385220080c33ba7c31b97602aa565c55d (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,868 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/0e/e4/823f1d0121170e2ef87db22de3aa6ec56aa12dff95bad6ff882788801f6f/chemfiles-0.9.1-py2.py3-none-win32.whl#sha256=709b3f369d196e1e812e7ecfb89abb34de3cc97ef1562a1383f83c66d16975e4 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,868 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/de/f3/9f283db2e7e46b119e14d3afc96d493e4b9ce11f3b5c5631841a80abf416/chemfiles-0.9.1-py2.py3-none-win_amd64.whl#sha256=f71215bc26a6c2f828cf463c6b606ff30bc9f18a5ee9329e11e8b613d83b66b8 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,868 Found link https://files.pythonhosted.org/packages/6b/17/6206cf78a997a67208ed920fa296acba1cb58f5b81d20280e3b2671f57a4/chemfiles-0.9.1.tar.gz#sha256=602567a8ebfd75e7ba017a9f95e6f7d7a8e070532bd71bf1f576202c7bcad230 (from https://pypi.org/simple/chemfiles/), version: 0.9.1 2021-07-31T13:54:20,869 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/04/4d/171aa08aca4f0082a19fc433aea614fc7bf08cf29b5af3ac65790a56bc08/chemfiles-0.9.2-py2.py3-none-macosx_10_9_x86_64.whl#sha256=40441eed225bfa08a9f1beedf2a056ed145fdff4d59ae6d26e0053dbb16ed618 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,869 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/a5/93/7d9e4b8bfc572f98102f8c2b42f01d8faa777c080fd0dc04724833e8a6f3/chemfiles-0.9.2-py2.py3-none-manylinux1_i686.whl#sha256=49ea873e68e4f033b4757c8a3529f5df90a89a5949187b7cecd261501497fc70 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,869 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/52/4b/9e5187e2bedd6833aff6b3b722e019523977deecb360693c81d417f6c888/chemfiles-0.9.2-py2.py3-none-manylinux1_x86_64.whl#sha256=a4451dbb898af4f0d50e8f03f107887413dbc2139570eb432577a82e69ddea3e (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,869 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/04/14/a55de824dee9d5c38748229f69001a715039c8915b24fabf9c2946581c81/chemfiles-0.9.2-py2.py3-none-win32.whl#sha256=92b5c1b504127431c67ab6539725995f788849e1bf0a0c106a9eaabcfeccaeb8 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,870 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/24/39/2cae9a642255077d30172fb73212ddb629b96ce1ac03372ae35e1d742fc6/chemfiles-0.9.2-py2.py3-none-win_amd64.whl#sha256=dde92d6884738b3d590efe04c4824b424b5e82f45f6a8ffc108c136548b5e22f (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,870 Found link https://files.pythonhosted.org/packages/37/fc/8cadfb904b448c40f4098a926ec5cb087e97bbdb3f82f127c567c46d19e4/chemfiles-0.9.2.tar.gz#sha256=3078cc37cf1830c59df47616bc11090fde5393be54043d4fedbe302c163be8d4 (from https://pypi.org/simple/chemfiles/), version: 0.9.2 2021-07-31T13:54:20,870 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/13/01/a1f9984db57f847e62fe5afaa3d3b561782ef5dd9e63f73f15778ada3325/chemfiles-0.9.3-py2.py3-none-macosx_10_9_x86_64.whl#sha256=009b535ceaf0e03d9e7e96856af4610832adefa42b76db1a57915a279d42a99d (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,870 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/7a/46/b5aa0b991d7ae1a020f21387a4f18759be771e2bee4d570edc5e341bd554/chemfiles-0.9.3-py2.py3-none-manylinux1_i686.whl#sha256=bbc6c5980429ff586ed43b64c89e0f2124ac79198b558b362e1df470bbf9647d (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,871 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/49/9c/e7c0b25f27e407bdae65326979bd6896e7a298443ef12460a03c83c1fef5/chemfiles-0.9.3-py2.py3-none-manylinux1_x86_64.whl#sha256=a4dcb49d7175dd191ec0cd18e5477faaa6620b53043334de9c0f13f4cdf06900 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,871 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/de/3f/a60c3dc355f3a57af230665e5f51b9eea48d0a8befccf04c453e4e7215bd/chemfiles-0.9.3-py2.py3-none-win32.whl#sha256=8078f0922f6afa809a56edf9750674aeece360b3ee35e55b1c7c257e04f74a7b (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,871 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/bf/be/3bb599844b26c9d715536b5b739e8236743e0f5364d456b6877ca40846f4/chemfiles-0.9.3-py2.py3-none-win_amd64.whl#sha256=6bd02207bf1cd03b38a4118c4ba828b7cfa853d15f0d324d0554c6802df19499 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,871 Found link https://files.pythonhosted.org/packages/83/eb/01da9325299b56b02859c5738a344f4c5f487b0a8bb604c48dae3925a550/chemfiles-0.9.3.tar.gz#sha256=fadbea3ac0253f7aef4820042cc4c68d94666ee543a620d21950458df3572e41 (from https://pypi.org/simple/chemfiles/), version: 0.9.3 2021-07-31T13:54:20,871 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/1c/00/c407ab8f71a9235f914e78172d53b3183a21db1b7b906bfa4db1bab925d8/chemfiles-0.10.0-py2.py3-none-macosx_10_9_x86_64.whl#sha256=d0bbe5a630f62544c19396fb5d222ea61385dc25808ee027a2309a7de0eb84e2 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,872 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/9f/42/b454e9fa56cedfd8b35b0f0a67de09df7bc5502c49205a80ac45cb7f4b35/chemfiles-0.10.0-py2.py3-none-manylinux1_i686.whl#sha256=2e359fb0dd9f35925c472bf584319beadf2b60de83576de32e8e7086708910c5 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,872 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/8c/74/5564f6222f328a3e7fd27d08c87542ac76cbf1a8619ea29e828309b61a0c/chemfiles-0.10.0-py2.py3-none-manylinux1_x86_64.whl#sha256=c52bb10f89512ff0d1068f4f281d7b1bf58848c6fc4e29159073a7ca8672cc5c (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,872 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/ec/dd/1b335ef5b3a8983045016b5e23f41df23b170a7a16ea84e7eb3cfffae354/chemfiles-0.10.0-py2.py3-none-win32.whl#sha256=c2b488c61bece351667db3ddf8179c9fcbad237c4fa6256bb20f97d120752715 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,872 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/e7/fc/79b3ae2516ac2f760af29301fe0f893adc5a17c16acc95ffb0bb493cbaec/chemfiles-0.10.0-py2.py3-none-win_amd64.whl#sha256=54bb292aab500a248ed02a23863382b9ec51cb6b8ed8d6057b187d610f02dfdc (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,872 Found link https://files.pythonhosted.org/packages/5b/a4/2a5eb0da89fc0d0b25c021182239dc528145de474273c1a9e15cc96ca301/chemfiles-0.10.0.tar.gz#sha256=b52bc19ac7967935a2acc896b1b9738bd904444a1fc09589ed6ada7658a02bf4 (from https://pypi.org/simple/chemfiles/), version: 0.10.0 2021-07-31T13:54:20,873 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/a0/31/90e416e7f1fff2f17cb13485f1c09cfe15c549fd42a6b9ea13cdd0604f27/chemfiles-0.10.1-py2.py3-none-macosx_10_9_x86_64.whl#sha256=d27fac1a2ef8d01b148ea6c47cd7eaf3c05c32d0806fc9a891871159c2d128d9 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,873 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/85/3a/7dd0f37dcc43fbe335d491127c95061d2b7bd47f61b58f01b0b6bb222d2d/chemfiles-0.10.1-py2.py3-none-manylinux_2_5_i686.manylinux1_i686.whl#sha256=3a672c00c2d0d71a45f1b5e781c501971cdca80c1ae8ce6ca13d433b8efcc116 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,873 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/bf/10/d046bb93aeb55d265aaa9bdc556bc09ae23a9288ae43cdd12aeb3bf2ca0e/chemfiles-0.10.1-py2.py3-none-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=f015a1ebce6e150ed542f3e5bad12a25c55425489ef44e2f7e7b98526de82f9c (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,873 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/8f/b9/4f73d4d346b4bff04d0b204b3906607208b8cfb5d4ce06818b762e754889/chemfiles-0.10.1-py2.py3-none-win32.whl#sha256=11e90b9b51742cbb442652892cb4e32f6167b6ff52cd1084c2cf9cbf91a4bd70 (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,874 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/dd/dd/ac7707485c26849fd1598d03573da94536c99aa553851271a9c02c86eea1/chemfiles-0.10.1-py2.py3-none-win_amd64.whl#sha256=6241a9375773d89f52547993e0492713be0cafb6797ae9c1fe0f6440a30f459a (from https://pypi.org/simple/chemfiles/) 2021-07-31T13:54:20,874 Found link https://files.pythonhosted.org/packages/80/9f/c80881a288476cfd63576345b6bfafd1b331d1254511ee40b629a3ba9979/chemfiles-0.10.1.tar.gz#sha256=6fe35c529c2ded099a59b689270ac0368c6aa33664069c1ccf88eb9fb2686906 (from https://pypi.org/simple/chemfiles/), version: 0.10.1 2021-07-31T13:54:20,874 Skipping link: not a file: https://pypi.org/simple/chemfiles/ 2021-07-31T13:54:20,888 Given no hashes to check 1 links for project 'chemfiles': discarding no candidates 2021-07-31T13:54:20,902 Collecting chemfiles==0.10.1 2021-07-31T13:54:20,904 Created temporary directory: /tmp/pip-unpack-tref3znx 2021-07-31T13:54:20,949 Downloading chemfiles-0.10.1.tar.gz (4.4 MB) 2021-07-31T13:54:22,034 Added chemfiles==0.10.1 from https://files.pythonhosted.org/packages/80/9f/c80881a288476cfd63576345b6bfafd1b331d1254511ee40b629a3ba9979/chemfiles-0.10.1.tar.gz#sha256=6fe35c529c2ded099a59b689270ac0368c6aa33664069c1ccf88eb9fb2686906 to build tracker '/tmp/pip-req-tracker-myt8bplb' 2021-07-31T13:54:22,035 Running setup.py (path:/tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/setup.py) egg_info for package chemfiles 2021-07-31T13:54:22,036 Created temporary directory: /tmp/pip-pip-egg-info-tbok2cno 2021-07-31T13:54:22,036 Running command python setup.py egg_info 2021-07-31T13:54:23,377 running egg_info 2021-07-31T13:54:23,379 creating /tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info 2021-07-31T13:54:23,380 writing /tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info/PKG-INFO 2021-07-31T13:54:23,384 writing dependency_links to /tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info/dependency_links.txt 2021-07-31T13:54:23,386 writing requirements to /tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info/requires.txt 2021-07-31T13:54:23,387 writing top-level names to /tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info/top_level.txt 2021-07-31T13:54:23,388 writing manifest file '/tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info/SOURCES.txt' 2021-07-31T13:54:23,395 reading manifest file '/tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info/SOURCES.txt' 2021-07-31T13:54:23,397 adding license file 'LICENSE' 2021-07-31T13:54:23,400 writing manifest file '/tmp/pip-pip-egg-info-tbok2cno/chemfiles.egg-info/SOURCES.txt' 2021-07-31T13:54:23,490 Source in /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774 has version 0.10.1, which satisfies requirement chemfiles==0.10.1 from https://files.pythonhosted.org/packages/80/9f/c80881a288476cfd63576345b6bfafd1b331d1254511ee40b629a3ba9979/chemfiles-0.10.1.tar.gz#sha256=6fe35c529c2ded099a59b689270ac0368c6aa33664069c1ccf88eb9fb2686906 2021-07-31T13:54:23,491 Removed chemfiles==0.10.1 from https://files.pythonhosted.org/packages/80/9f/c80881a288476cfd63576345b6bfafd1b331d1254511ee40b629a3ba9979/chemfiles-0.10.1.tar.gz#sha256=6fe35c529c2ded099a59b689270ac0368c6aa33664069c1ccf88eb9fb2686906 from build tracker '/tmp/pip-req-tracker-myt8bplb' 2021-07-31T13:54:23,495 Created temporary directory: /tmp/pip-unpack-1ny0huc5 2021-07-31T13:54:23,496 Building wheels for collected packages: chemfiles 2021-07-31T13:54:23,501 Created temporary directory: /tmp/pip-wheel-hzfjqrww 2021-07-31T13:54:23,501 Building wheel for chemfiles (setup.py): started 2021-07-31T13:54:23,501 Destination directory: /tmp/pip-wheel-hzfjqrww 2021-07-31T13:54:23,502 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hzfjqrww 2021-07-31T13:54:24,883 -------------------------------------------------------------------------------- 2021-07-31T13:54:24,883 -- Trying "Ninja" generator 2021-07-31T13:54:24,884 -------------------------------- 2021-07-31T13:54:24,884 --------------------------- 2021-07-31T13:54:24,884 ---------------------- 2021-07-31T13:54:24,884 ----------------- 2021-07-31T13:54:24,885 ------------ 2021-07-31T13:54:24,885 ------- 2021-07-31T13:54:24,885 -- 2021-07-31T13:54:24,945 Not searching for unused variables given on the command line. 2021-07-31T13:54:25,007 CMake Error: CMake was unable to find a build program corresponding to "Ninja". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool. 2021-07-31T13:54:25,009 -- Configuring incomplete, errors occurred! 2021-07-31T13:54:25,010 See also "/tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log". 2021-07-31T13:54:25,021 -- 2021-07-31T13:54:25,022 ------- 2021-07-31T13:54:25,022 ------------ 2021-07-31T13:54:25,022 ----------------- 2021-07-31T13:54:25,023 ---------------------- 2021-07-31T13:54:25,023 --------------------------- 2021-07-31T13:54:25,023 -------------------------------- 2021-07-31T13:54:25,024 -- Trying "Ninja" generator - failure 2021-07-31T13:54:25,024 -------------------------------------------------------------------------------- 2021-07-31T13:54:25,025 -------------------------------------------------------------------------------- 2021-07-31T13:54:25,025 -- Trying "Unix Makefiles" generator 2021-07-31T13:54:25,025 -------------------------------- 2021-07-31T13:54:25,026 --------------------------- 2021-07-31T13:54:25,026 ---------------------- 2021-07-31T13:54:25,026 ----------------- 2021-07-31T13:54:25,026 ------------ 2021-07-31T13:54:25,026 ------- 2021-07-31T13:54:25,027 -- 2021-07-31T13:54:25,095 Not searching for unused variables given on the command line. 2021-07-31T13:54:25,431 -- The C compiler identification is GNU 8.3.0 2021-07-31T13:54:25,472 -- Check for working C compiler: /usr/bin/cc 2021-07-31T13:54:25,909 -- Check for working C compiler: /usr/bin/cc -- works 2021-07-31T13:54:25,917 -- Detecting C compiler ABI info 2021-07-31T13:54:26,362 -- Detecting C compiler ABI info - done 2021-07-31T13:54:26,428 -- Detecting C compile features 2021-07-31T13:54:26,430 -- Detecting C compile features - done 2021-07-31T13:54:26,849 -- The CXX compiler identification is GNU 8.3.0 2021-07-31T13:54:26,879 -- Check for working CXX compiler: /usr/bin/c++ 2021-07-31T13:54:28,002 -- Check for working CXX compiler: /usr/bin/c++ -- works 2021-07-31T13:54:28,008 -- Detecting CXX compiler ABI info 2021-07-31T13:54:28,580 -- Detecting CXX compiler ABI info - done 2021-07-31T13:54:28,650 -- Detecting CXX compile features 2021-07-31T13:54:28,653 -- Detecting CXX compile features - done 2021-07-31T13:54:28,664 -- Configuring done 2021-07-31T13:54:28,674 -- Generating done 2021-07-31T13:54:28,685 -- Build files have been written to: /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/_cmake_test_compile/build 2021-07-31T13:54:28,694 -- 2021-07-31T13:54:28,694 ------- 2021-07-31T13:54:28,694 ------------ 2021-07-31T13:54:28,694 ----------------- 2021-07-31T13:54:28,694 ---------------------- 2021-07-31T13:54:28,695 --------------------------- 2021-07-31T13:54:28,695 -------------------------------- 2021-07-31T13:54:28,695 -- Trying "Unix Makefiles" generator - success 2021-07-31T13:54:28,695 -------------------------------------------------------------------------------- 2021-07-31T13:54:28,719 Configuring Project 2021-07-31T13:54:28,719 Working directory: 2021-07-31T13:54:28,719 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/_skbuild/linux-armv7l-3.7/cmake-build 2021-07-31T13:54:28,719 Command: 2021-07-31T13:54:28,719 cmake /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774 -G 'Unix Makefiles' -DCMAKE_INSTALL_PREFIX:PATH=/tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/_skbuild/linux-armv7l-3.7/cmake-install -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION_STRING:STRING=3.7.3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.7m -DPYTHON_LIBRARY:FILEPATH=/usr/lib/arm-linux-gnueabihf/libpython3.7m.so -DSKBUILD:BOOL=TRUE -DCMAKE_MODULE_PATH:PATH=/usr/local/lib/python3.7/dist-packages/skbuild/resources/cmake -DCMAKE_BUILD_TYPE:STRING=Release 2021-07-31T13:54:28,875 -- Using internal chemfiles from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib 2021-07-31T13:54:29,161 -- The C compiler identification is GNU 8.3.0 2021-07-31T13:54:29,581 -- The CXX compiler identification is GNU 8.3.0 2021-07-31T13:54:29,613 -- Check for working C compiler: /usr/bin/cc 2021-07-31T13:54:30,068 -- Check for working C compiler: /usr/bin/cc -- works 2021-07-31T13:54:30,074 -- Detecting C compiler ABI info 2021-07-31T13:54:30,519 -- Detecting C compiler ABI info - done 2021-07-31T13:54:30,590 -- Detecting C compile features 2021-07-31T13:54:30,592 -- Detecting C compile features - done 2021-07-31T13:54:30,615 -- Check for working CXX compiler: /usr/bin/c++ 2021-07-31T13:54:31,195 -- Check for working CXX compiler: /usr/bin/c++ -- works 2021-07-31T13:54:31,201 -- Detecting CXX compiler ABI info 2021-07-31T13:54:31,775 -- Detecting CXX compiler ABI info - done 2021-07-31T13:54:31,846 -- Detecting CXX compile features 2021-07-31T13:54:31,849 -- Detecting CXX compile features - done 2021-07-31T13:55:27,949 -- Unpacking zlib sources 2021-07-31T13:55:30,557 -- Unpacking lzma sources 2021-07-31T13:55:38,304 -- Check if the system is big endian 2021-07-31T13:55:38,305 -- Searching 16 bit integer 2021-07-31T13:55:38,780 -- Using unsigned short 2021-07-31T13:55:39,231 -- Check if the system is big endian - little endian 2021-07-31T13:55:48,764 -- Unpacking bzip2 sources 2021-07-31T13:55:49,049 -- Unpacking fmt sources 2021-07-31T13:55:52,763 -- Unpacking toml11 sources 2021-07-31T13:55:53,035 -- Unpacking netcdf sources 2021-07-31T13:56:23,828 -- Unpacking tng sources 2021-07-31T13:56:24,358 -- Check if the system is big endian 2021-07-31T13:56:24,358 -- Searching 16 bit integer 2021-07-31T13:56:24,360 -- Using unsigned short 2021-07-31T13:56:24,800 -- Check if the system is big endian - little endian 2021-07-31T13:56:25,279 -- Unpacking molfiles sources 2021-07-31T13:56:25,731 -- Unpacking mmtf-cpp sources 2021-07-31T13:56:26,865 -- Unpacking pugixml sources 2021-07-31T13:56:27,162 -- Unpacking xdrfile sources 2021-07-31T13:56:27,856 -- Unpacking gemmi sources 2021-07-31T13:56:30,145 -- Configuring done 2021-07-31T13:56:30,823 -- Generating done 2021-07-31T13:56:30,866 CMake Warning: 2021-07-31T13:56:30,866 Manually-specified variables were not used by the project: 2021-07-31T13:56:30,866 PYTHON_EXECUTABLE 2021-07-31T13:56:30,866 PYTHON_INCLUDE_DIR 2021-07-31T13:56:30,867 PYTHON_LIBRARY 2021-07-31T13:56:30,867 PYTHON_VERSION_STRING 2021-07-31T13:56:30,867 SKBUILD 2021-07-31T13:56:30,872 -- Build files have been written to: /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/_skbuild/linux-armv7l-3.7/cmake-build 2021-07-31T13:56:31,392 Scanning dependencies of target xdrfile 2021-07-31T13:56:31,462 [ 0%] Building C object lib/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile.c.o 2021-07-31T13:56:33,794 [ 0%] Building C object lib/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_trr.c.o 2021-07-31T13:56:34,479 [ 1%] Building C object lib/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_xtc.c.o 2021-07-31T13:56:34,779 [ 1%] Built target xdrfile 2021-07-31T13:56:34,860 Scanning dependencies of target pugixml 2021-07-31T13:56:34,927 [ 1%] Building CXX object lib/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o 2021-07-31T13:56:50,020 [ 1%] Built target pugixml 2021-07-31T13:56:50,122 Scanning dependencies of target zlib 2021-07-31T13:56:50,190 [ 1%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/adler32.c.o 2021-07-31T13:56:50,550 [ 2%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/compress.c.o 2021-07-31T13:56:50,753 [ 2%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/crc32.c.o 2021-07-31T13:56:51,187 [ 3%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/deflate.c.o 2021-07-31T13:56:53,177 [ 3%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o 2021-07-31T13:56:53,411 [ 4%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzlib.c.o 2021-07-31T13:56:53,905 [ 4%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzread.c.o 2021-07-31T13:56:54,518 [ 4%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzwrite.c.o 2021-07-31T13:56:55,124 [ 5%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/inflate.c.o 2021-07-31T13:56:56,861 [ 5%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/infback.c.o 2021-07-31T13:56:57,609 [ 6%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/inftrees.c.o 2021-07-31T13:56:58,083 [ 6%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/inffast.c.o 2021-07-31T13:56:58,562 [ 7%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/trees.c.o 2021-07-31T13:56:59,706 [ 7%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/uncompr.c.o 2021-07-31T13:56:59,908 [ 8%] Building C object lib/external/zlib/CMakeFiles/zlib.dir/zutil.c.o 2021-07-31T13:57:00,140 [ 8%] Built target zlib 2021-07-31T13:57:00,606 Scanning dependencies of target lzma 2021-07-31T13:57:00,704 [ 9%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o 2021-07-31T13:57:00,983 [ 9%] 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2021-07-31T13:57:24,230 [ 34%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/arm.c.o 2021-07-31T13:57:24,500 [ 35%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/armthumb.c.o 2021-07-31T13:57:24,775 [ 35%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/ia64.c.o 2021-07-31T13:57:25,136 [ 36%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/powerpc.c.o 2021-07-31T13:57:25,407 [ 36%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_coder.c.o 2021-07-31T13:57:25,745 [ 37%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_decoder.c.o 2021-07-31T13:57:25,992 [ 37%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_encoder.c.o 2021-07-31T13:57:26,239 [ 38%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/sparc.c.o 2021-07-31T13:57:26,513 [ 38%] Building C object lib/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/x86.c.o 2021-07-31T13:57:26,862 [ 38%] Built target lzma 2021-07-31T13:57:28,539 Scanning dependencies of target chemfiles_objects 2021-07-31T13:57:28,653 [ 38%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o 2021-07-31T13:57:31,431 [ 39%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o 2021-07-31T13:57:47,364 In file included from /usr/include/c++/8/vector:69, 2021-07-31T13:57:47,364 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Configuration.cpp:7: 2021-07-31T13:57:47,364 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const toml::value&}; _Tp = toml::value; _Alloc = std::allocator]’: 2021-07-31T13:57:47,365 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T13:57:47,365 vector<_Tp, _Alloc>:: 2021-07-31T13:57:47,365 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T13:57:50,292 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {toml::value}; _Tp = toml::value; _Alloc = std::allocator]’: 2021-07-31T13:57:50,293 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T13:58:11,160 In file included from /usr/include/c++/8/vector:64, 2021-07-31T13:58:11,161 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Configuration.cpp:7: 2021-07-31T13:58:11,161 /usr/include/c++/8/bits/stl_vector.h: In function ‘toml::result > toml::detail::insert_nested_key(toml::table&, const toml::value&, InputIterator, InputIterator, toml::detail::region, bool) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; Container = std::vector]’: 2021-07-31T13:58:11,161 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T13:58:11,161 _M_realloc_insert(end(), __x); 2021-07-31T13:58:11,161 ^~~~~~~~~~~~~~~~~ 2021-07-31T13:58:12,611 In file included from /usr/include/c++/8/vector:69, 2021-07-31T13:58:12,611 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Configuration.cpp:7: 2021-07-31T13:58:12,612 /usr/include/c++/8/bits/vector.tcc: In function ‘toml::result, toml::detail::region >, std::__cxx11::basic_string > toml::detail::parse_array(toml::detail::location&) [with Container = std::vector]’: 2021-07-31T13:58:12,612 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T13:58:12,612 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T13:58:12,612 ^~~~~~~~~~~~~~~~~ 2021-07-31T13:58:14,977 [ 39%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o 2021-07-31T13:58:24,824 [ 40%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o 2021-07-31T13:58:33,527 [ 40%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o 2021-07-31T13:58:37,287 In file included from /usr/include/c++/8/vector:69, 2021-07-31T13:58:37,288 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Format.cpp:6: 2021-07-31T13:58:37,288 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2021-07-31T13:58:37,288 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T13:58:37,288 vector<_Tp, _Alloc>:: 2021-07-31T13:58:37,288 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T13:58:41,833 /usr/include/c++/8/bits/vector.tcc: In member function ‘virtual void chemfiles::TextFormat::write(const chemfiles::Frame&)’: 2021-07-31T13:58:41,833 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T13:58:41,833 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T13:58:41,834 ^~~~~~~~~~~~~~~~~ 2021-07-31T13:58:42,357 [ 41%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o 2021-07-31T13:59:02,130 [ 41%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/FormatMetadata.cpp.o 2021-07-31T13:59:11,555 [ 42%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o 2021-07-31T13:59:16,745 In file included from /usr/include/c++/8/vector:69, 2021-07-31T13:59:16,745 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Frame.cpp:8: 2021-07-31T13:59:16,746 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const chemfiles::Vector3D&}; _Tp = chemfiles::Vector3D; _Alloc = std::allocator]’: 2021-07-31T13:59:16,746 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T13:59:16,746 vector<_Tp, _Alloc>:: 2021-07-31T13:59:16,746 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T13:59:16,792 In file included from /usr/include/c++/8/vector:64, 2021-07-31T13:59:16,792 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Frame.cpp:8: 2021-07-31T13:59:16,792 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::Frame::add_atom(chemfiles::Atom, chemfiles::Vector3D, chemfiles::Vector3D)’: 2021-07-31T13:59:16,792 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T13:59:16,792 _M_realloc_insert(end(), __x); 2021-07-31T13:59:16,792 ^~~~~~~~~~~~~~~~~ 2021-07-31T13:59:16,793 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T13:59:16,793 _M_realloc_insert(end(), __x); 2021-07-31T13:59:16,793 ^~~~~~~~~~~~~~~~~ 2021-07-31T13:59:22,352 [ 42%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o 2021-07-31T13:59:30,907 [ 42%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o 2021-07-31T13:59:39,271 [ 43%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o 2021-07-31T13:59:50,544 [ 43%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o 2021-07-31T13:59:55,170 In file included from /usr/include/c++/8/vector:69, 2021-07-31T13:59:55,170 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Topology.cpp:5: 2021-07-31T13:59:55,170 /usr/include/c++/8/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = chemfiles::Atom; _Alloc = std::allocator]’: 2021-07-31T13:59:55,171 /usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T13:59:55,171 vector<_Tp, _Alloc>:: 2021-07-31T13:59:55,171 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T13:59:55,272 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2021-07-31T13:59:55,272 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T13:59:55,272 vector<_Tp, _Alloc>:: 2021-07-31T13:59:55,273 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T13:59:55,747 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = chemfiles::Atom; _Alloc = std::allocator]’: 2021-07-31T13:59:55,747 /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T13:59:55,747 vector<_Tp, _Alloc>:: 2021-07-31T13:59:55,747 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:00:00,423 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Topology::add_residue(chemfiles::Residue)’: 2021-07-31T14:00:00,424 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:00:00,424 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:00:00,424 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:00:00,536 In file included from /usr/include/c++/8/vector:64, 2021-07-31T14:00:00,536 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/Topology.cpp:5: 2021-07-31T14:00:00,537 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::Topology::remove(size_t)’: 2021-07-31T14:00:00,537 /usr/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:00:00,537 { return _M_erase(begin() + (__position - cbegin())); } 2021-07-31T14:00:00,537 ^ 2021-07-31T14:00:00,597 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::Topology::resize(size_t)’: 2021-07-31T14:00:00,597 /usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:00:00,597 _M_fill_insert(end(), __new_size - size(), __x); 2021-07-31T14:00:00,597 ^~~~~~~~~~~~~~ 2021-07-31T14:00:00,810 [ 44%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o 2021-07-31T14:00:14,619 [ 44%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o 2021-07-31T14:00:22,912 [ 45%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/atom.cpp.o 2021-07-31T14:00:35,826 [ 45%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/cell.cpp.o 2021-07-31T14:00:47,257 [ 46%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/frame.cpp.o 2021-07-31T14:01:02,585 [ 46%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/misc.cpp.o 2021-07-31T14:01:13,011 [ 46%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/property.cpp.o 2021-07-31T14:01:23,082 [ 47%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/residue.cpp.o 2021-07-31T14:01:35,269 [ 47%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/selection.cpp.o 2021-07-31T14:01:45,330 [ 48%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/shared_allocator.cpp.o 2021-07-31T14:01:47,810 [ 48%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/topology.cpp.o 2021-07-31T14:02:02,636 [ 49%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/trajectory.cpp.o 2021-07-31T14:02:15,198 [ 49%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/Bz2File.cpp.o 2021-07-31T14:02:24,799 [ 50%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/GzFile.cpp.o 2021-07-31T14:02:34,243 [ 50%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/MemoryBuffer.cpp.o 2021-07-31T14:02:42,235 [ 50%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/MemoryFile.cpp.o 2021-07-31T14:02:50,268 [ 51%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/NcFile.cpp.o 2021-07-31T14:02:59,048 [ 51%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/PlainFile.cpp.o 2021-07-31T14:03:08,418 [ 52%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/TNGFile.cpp.o 2021-07-31T14:03:16,532 [ 52%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/XDRFile.cpp.o 2021-07-31T14:03:24,689 [ 53%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/XzFile.cpp.o 2021-07-31T14:03:34,188 [ 53%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/AmberNetCDF.cpp.o 2021-07-31T14:03:44,299 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp: In member function ‘void chemfiles::Amber::read_array(chemfiles::span, const string&) [with chemfiles::AmberFormat F = (chemfiles::AmberFormat)1]’: 2021-07-31T14:03:44,299 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp:207:6: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:03:44,299 void Amber::read_array(span array, const std::string& name) { 2021-07-31T14:03:44,299 ^~~~~~~~ 2021-07-31T14:03:44,365 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp: In member function ‘void chemfiles::Amber::read_array(chemfiles::span, const string&) [with chemfiles::AmberFormat F = (chemfiles::AmberFormat)0]’: 2021-07-31T14:03:44,365 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp:207:6: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:03:45,359 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp: In member function ‘void chemfiles::Amber::read_step(size_t, chemfiles::Frame&) [with chemfiles::AmberFormat F = (chemfiles::AmberFormat)1]’: 2021-07-31T14:03:45,359 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp:115:5: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:03:45,359 read_array(frame.positions(), "coordinates"); 2021-07-31T14:03:45,360 ^~~~~~~~~~ 2021-07-31T14:03:45,360 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp:118:9: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:03:45,360 read_array(*frame.velocities(), "velocities"); 2021-07-31T14:03:45,360 ^~~~~~~~~~ 2021-07-31T14:03:45,552 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp: In member function ‘void chemfiles::Amber::read_step(size_t, chemfiles::Frame&) [with chemfiles::AmberFormat F = (chemfiles::AmberFormat)0]’: 2021-07-31T14:03:45,552 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp:115:5: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:03:45,553 read_array(frame.positions(), "coordinates"); 2021-07-31T14:03:45,553 ^~~~~~~~~~ 2021-07-31T14:03:45,553 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/AmberNetCDF.cpp:118:9: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:03:45,554 read_array(*frame.velocities(), "velocities"); 2021-07-31T14:03:45,554 ^~~~~~~~~~ 2021-07-31T14:03:46,036 [ 54%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/CIF.cpp.o 2021-07-31T14:03:59,022 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:03:59,022 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/CIF.cpp:11: 2021-07-31T14:03:59,022 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2021-07-31T14:03:59,022 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:03:59,023 vector<_Tp, _Alloc>:: 2021-07-31T14:03:59,023 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:03:59,204 In file included from /usr/include/c++/8/vector:64, 2021-07-31T14:03:59,205 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/CIF.cpp:11: 2021-07-31T14:03:59,205 /usr/include/c++/8/bits/stl_vector.h: In member function ‘std::vector gemmi::SmallStructure::get_all_unit_cell_sites() const’: 2021-07-31T14:03:59,205 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:03:59,205 _M_realloc_insert(end(), __x); 2021-07-31T14:03:59,205 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:03:59,206 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:03:59,207 _M_realloc_insert(end(), __x); 2021-07-31T14:03:59,207 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:04:00,569 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:04:00,569 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/CIF.cpp:11: 2021-07-31T14:04:00,569 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::AtomType&}; _Tp = gemmi::SmallStructure::AtomType; _Alloc = std::allocator]’: 2021-07-31T14:04:00,570 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:04:00,570 vector<_Tp, _Alloc>:: 2021-07-31T14:04:00,570 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:04:00,791 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-31T14:04:00,791 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:04:00,860 /usr/include/c++/8/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’: 2021-07-31T14:04:00,860 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:04:00,861 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:04:00,861 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:04:01,275 In file included from /usr/include/c++/8/vector:64, 2021-07-31T14:04:01,275 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/CIF.cpp:11: 2021-07-31T14:04:01,275 /usr/include/c++/8/bits/stl_vector.h: In function ‘gemmi::SmallStructure gemmi::make_small_structure_from_block(const gemmi::cif::Block&)’: 2021-07-31T14:04:01,276 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:04:01,276 _M_realloc_insert(end(), __x); 2021-07-31T14:04:01,276 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:04:01,280 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:04:01,280 _M_realloc_insert(end(), __x); 2021-07-31T14:04:01,280 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:04:02,180 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:04:02,180 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/CIF.cpp:11: 2021-07-31T14:04:02,180 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure&}; _Tp = gemmi::SmallStructure; _Alloc = std::allocator]’: 2021-07-31T14:04:02,180 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:04:02,181 vector<_Tp, _Alloc>:: 2021-07-31T14:04:02,181 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:04:08,583 In file included from /usr/include/c++/8/vector:64, 2021-07-31T14:04:08,583 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/CIF.cpp:11: 2021-07-31T14:04:08,583 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::CIFFormat::init_()’: 2021-07-31T14:04:08,583 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:04:08,584 _M_realloc_insert(end(), __x); 2021-07-31T14:04:08,584 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:04:08,993 [ 54%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/CML.cpp.o 2021-07-31T14:04:22,020 [ 54%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/CSSR.cpp.o 2021-07-31T14:04:33,840 [ 55%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/GRO.cpp.o 2021-07-31T14:04:45,974 [ 55%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSData.cpp.o 2021-07-31T14:04:55,092 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:04:55,093 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/LAMMPSData.cpp:11: 2021-07-31T14:04:55,093 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: 2021-07-31T14:04:55,093 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, double>, std::allocator, double> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double>, std::allocator, double> > > >’} changed in GCC 7.1 2021-07-31T14:04:55,093 vector<_Tp, _Alloc>:: 2021-07-31T14:04:55,093 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:05:01,206 /usr/include/c++/8/bits/vector.tcc: In constructor ‘chemfiles::DataTypes::DataTypes(const chemfiles::Topology&)’: 2021-07-31T14:05:01,207 /usr/include/c++/8/bits/vector.tcc:343:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double>, std::allocator, double> > > >’ changed in GCC 7.1 2021-07-31T14:05:01,207 _M_realloc_insert(begin() + __n, std::move(__v)); 2021-07-31T14:05:01,207 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:05:03,125 [ 56%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSTrajectory.cpp.o 2021-07-31T14:05:16,528 [ 56%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/MMTF.cpp.o 2021-07-31T14:05:33,366 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:05:33,366 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/MMTF.cpp:8: 2021-07-31T14:05:33,366 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue&}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2021-07-31T14:05:33,367 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:05:33,367 vector<_Tp, _Alloc>:: 2021-07-31T14:05:33,367 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:05:34,198 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::MMTFFormat::apply_symmetry(chemfiles::Frame&)’: 2021-07-31T14:05:34,198 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:05:34,198 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:05:34,199 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:05:44,863 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/MMTF.cpp: In member function ‘void chemfiles::MMTFFormat::read_group(chemfiles::Frame&, size_t, chemfiles::Residue&, chemfiles::span)’: 2021-07-31T14:05:44,864 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/MMTF.cpp:294:6: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:05:44,864 void MMTFFormat::read_group(Frame& frame, size_t group_type, Residue& residue, span positions) { 2021-07-31T14:05:44,864 ^~~~~~~~~~ 2021-07-31T14:05:45,084 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/MMTF.cpp: In member function ‘void chemfiles::MMTFFormat::read_model(chemfiles::Frame&)’: 2021-07-31T14:05:45,084 /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/MMTF.cpp:235:23: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2021-07-31T14:05:45,085 read_group(frame, group_type, residue, positions); 2021-07-31T14:05:45,085 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-31T14:05:46,337 [ 57%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/MOL2.cpp.o 2021-07-31T14:05:59,430 [ 57%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/Molfile.cpp.o 2021-07-31T14:06:05,927 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:06:05,928 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/Molfile.cpp:14: 2021-07-31T14:06:05,928 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Frame}; _Tp = chemfiles::Frame; _Alloc = std::allocator]’: 2021-07-31T14:06:05,928 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:06:05,928 vector<_Tp, _Alloc>:: 2021-07-31T14:06:05,928 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:06:11,394 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Molfile::read(chemfiles::Frame&) [with chemfiles::MolfileFormat F = (chemfiles::MolfileFormat)0]’: 2021-07-31T14:06:11,394 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:06:11,394 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:06:11,395 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:06:11,478 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Molfile::read(chemfiles::Frame&) [with chemfiles::MolfileFormat F = (chemfiles::MolfileFormat)1]’: 2021-07-31T14:06:11,478 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:06:11,478 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:06:11,478 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:06:11,561 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Molfile::read(chemfiles::Frame&) [with chemfiles::MolfileFormat F = (chemfiles::MolfileFormat)2]’: 2021-07-31T14:06:11,561 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:06:11,562 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:06:11,562 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:06:11,841 [ 58%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/PDB.cpp.o 2021-07-31T14:06:20,200 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:06:20,200 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/PDB.cpp:12: 2021-07-31T14:06:20,200 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: 2021-07-31T14:06:20,201 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:06:20,201 vector<_Tp, _Alloc>:: 2021-07-31T14:06:20,201 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:06:26,630 /usr/include/c++/8/bits/vector.tcc: In member function ‘virtual void chemfiles::PDBFormat::write_next(const chemfiles::Frame&)’: 2021-07-31T14:06:26,630 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:06:26,630 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:06:26,631 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:06:26,631 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:06:26,631 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:06:26,631 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:06:28,030 [ 58%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/SDF.cpp.o 2021-07-31T14:06:39,631 [ 58%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/SMI.cpp.o 2021-07-31T14:06:48,193 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:06:48,194 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/SMI.cpp:14: 2021-07-31T14:06:48,194 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2021-07-31T14:06:48,194 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:06:48,194 vector<_Tp, _Alloc>:: 2021-07-31T14:06:48,194 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:06:48,301 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {chemfiles::Residue}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2021-07-31T14:06:48,301 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:06:48,301 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:06:48,301 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:06:55,750 [ 59%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/TNG.cpp.o 2021-07-31T14:07:01,213 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:07:01,214 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/TNG.cpp:9: 2021-07-31T14:07:01,214 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: 2021-07-31T14:07:01,214 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:07:01,214 vector<_Tp, _Alloc>:: 2021-07-31T14:07:01,214 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:07:05,876 In file included from /usr/include/c++/8/vector:64, 2021-07-31T14:07:05,877 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/TNG.cpp:9: 2021-07-31T14:07:05,877 /usr/include/c++/8/bits/stl_vector.h: In constructor ‘chemfiles::TNGFormat::TNGFormat(std::__cxx11::string, chemfiles::File::Mode, chemfiles::File::Compression)’: 2021-07-31T14:07:05,877 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:07:05,877 _M_realloc_insert(end(), __x); 2021-07-31T14:07:05,877 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:07:06,132 [ 59%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/TRR.cpp.o 2021-07-31T14:07:15,519 [ 60%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/Tinker.cpp.o 2021-07-31T14:07:27,382 [ 60%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/XTC.cpp.o 2021-07-31T14:07:36,565 [ 61%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/XYZ.cpp.o 2021-07-31T14:07:50,257 [ 61%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/mmCIF.cpp.o 2021-07-31T14:07:57,249 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:07:57,249 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/mmCIF.cpp:8: 2021-07-31T14:07:57,249 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2021-07-31T14:07:57,250 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:07:57,250 vector<_Tp, _Alloc>:: 2021-07-31T14:07:57,250 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:08:02,493 In file included from /usr/include/c++/8/vector:64, 2021-07-31T14:08:02,494 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/formats/mmCIF.cpp:8: 2021-07-31T14:08:02,494 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::mmCIFFormat::init_()’: 2021-07-31T14:08:02,494 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:08:02,494 _M_realloc_insert(end(), __x); 2021-07-31T14:08:02,494 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:08:02,495 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:08:02,495 _M_realloc_insert(end(), __x); 2021-07-31T14:08:02,495 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:08:04,093 [ 61%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/guess_format.cpp.o 2021-07-31T14:08:12,649 [ 62%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/parse.cpp.o 2021-07-31T14:08:22,486 [ 62%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/pdb_connectivity.cpp.o 2021-07-31T14:08:32,741 [ 63%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/periodic_table.cpp.o 2021-07-31T14:08:38,856 [ 63%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/selections/NumericValues.cpp.o 2021-07-31T14:08:46,604 [ 64%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/selections/expr.cpp.o 2021-07-31T14:08:59,224 [ 64%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/selections/lexer.cpp.o 2021-07-31T14:09:03,061 In file included from /usr/include/c++/8/vector:69, 2021-07-31T14:09:03,061 from /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/lib/src/selections/lexer.cpp:8: 2021-07-31T14:09:03,061 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::selections::Token}; _Tp = chemfiles::selections::Token; _Alloc = std::allocator]’: 2021-07-31T14:09:03,062 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2021-07-31T14:09:03,062 vector<_Tp, _Alloc>:: 2021-07-31T14:09:03,062 ^~~~~~~~~~~~~~~~~~~ 2021-07-31T14:09:03,110 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {chemfiles::selections::Token}; _Tp = chemfiles::selections::Token; _Alloc = std::allocator]’: 2021-07-31T14:09:03,111 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-31T14:09:03,111 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-31T14:09:03,111 ^~~~~~~~~~~~~~~~~ 2021-07-31T14:09:08,413 [ 65%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/selections/parser.cpp.o 2021-07-31T14:09:25,562 [ 65%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/utils.cpp.o 2021-07-31T14:09:27,523 [ 65%] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/warnings.cpp.o 2021-07-31T14:09:29,499 [ 65%] Built target chemfiles_objects 2021-07-31T14:09:29,589 Scanning dependencies of target bzip2 2021-07-31T14:09:29,662 [ 65%] Building C object lib/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o 2021-07-31T14:09:31,510 [ 65%] Building C object 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2021-07-31T14:10:46,939 [ 96%] Building C object lib/external/tng/CMakeFiles/tng_io.dir/src/compression/widemuldiv.c.o 2021-07-31T14:10:47,203 [ 96%] Building C object lib/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc2.c.o 2021-07-31T14:10:49,391 [ 97%] Building C object lib/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc3.c.o 2021-07-31T14:10:51,809 [ 97%] Building C object lib/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o 2021-07-31T14:11:03,355 [ 98%] Building C object lib/external/tng/CMakeFiles/tng_io.dir/src/lib/md5.c.o 2021-07-31T14:11:03,754 [ 98%] Built target tng_io 2021-07-31T14:11:03,851 Scanning dependencies of target molfiles 2021-07-31T14:11:03,925 [ 98%] Building C object lib/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o 2021-07-31T14:11:05,660 [ 99%] Building CXX object lib/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o 2021-07-31T14:11:07,998 [ 99%] Building C object lib/external/molfiles/CMakeFiles/molfiles.dir/src/lammpsplugin.c.o 2021-07-31T14:11:09,767 [100%] Building C object lib/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o 2021-07-31T14:11:11,584 [100%] Built target molfiles 2021-07-31T14:11:11,661 Scanning dependencies of target chemfiles 2021-07-31T14:11:11,782 [100%] Linking CXX shared library libchemfiles.so 2021-07-31T14:11:14,655 [100%] Built target chemfiles 2021-07-31T14:11:14,727 Scanning dependencies of target build_chemfiles 2021-07-31T14:11:14,796 [100%] Built target build_chemfiles 2021-07-31T14:11:17,616 Install the project... 2021-07-31T14:11:17,667 -- Install configuration: "Release" 2021-07-31T14:11:17,670 -- Installing: /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/_skbuild/linux-armv7l-3.7/cmake-install/chemfiles/libchemfiles.so.0.10.1 2021-07-31T14:11:17,749 -- Installing: /tmp/pip-wheel-pn593396/chemfiles_ee146dc3092b41fc9895951112896774/_skbuild/linux-armv7l-3.7/cmake-install/chemfiles/libchemfiles.so 2021-07-31T14:11:17,766 copying chemfiles/__init__.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/__init__.py 2021-07-31T14:11:17,768 copying chemfiles/ffi.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/ffi.py 2021-07-31T14:11:17,771 copying chemfiles/residue.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/residue.py 2021-07-31T14:11:17,773 copying chemfiles/frame.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/frame.py 2021-07-31T14:11:17,775 copying chemfiles/topology.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/topology.py 2021-07-31T14:11:17,778 copying chemfiles/property.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/property.py 2021-07-31T14:11:17,780 copying chemfiles/selection.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/selection.py 2021-07-31T14:11:17,782 copying chemfiles/cell.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/cell.py 2021-07-31T14:11:17,784 copying chemfiles/clib.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/clib.py 2021-07-31T14:11:17,787 copying chemfiles/misc.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/misc.py 2021-07-31T14:11:17,789 copying chemfiles/trajectory.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/trajectory.py 2021-07-31T14:11:17,792 copying chemfiles/atom.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/atom.py 2021-07-31T14:11:17,794 copying chemfiles/utils.py -> _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/utils.py 2021-07-31T14:11:17,840 running bdist_wheel 2021-07-31T14:11:17,844 running build 2021-07-31T14:11:17,844 running build_py 2021-07-31T14:11:17,846 creating _skbuild/linux-armv7l-3.7/setuptools/lib 2021-07-31T14:11:17,847 creating _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,848 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/__init__.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,850 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/ffi.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,852 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/residue.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,854 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/frame.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,857 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/topology.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,859 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/property.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,861 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/selection.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,863 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/cell.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,865 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/clib.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,866 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/misc.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,869 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/trajectory.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,872 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/atom.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,874 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/utils.py -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,881 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/libchemfiles.so -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:17,957 copying _skbuild/linux-armv7l-3.7/cmake-install/chemfiles/libchemfiles.so.0.10.1 -> _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles 2021-07-31T14:11:18,043 copied 13 files 2021-07-31T14:11:18,043 running build_ext 2021-07-31T14:11:18,044 installing to _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel 2021-07-31T14:11:18,044 running install 2021-07-31T14:11:18,045 running install_lib 2021-07-31T14:11:18,047 creating _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l 2021-07-31T14:11:18,047 creating _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel 2021-07-31T14:11:18,049 creating _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,050 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/__init__.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,052 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/ffi.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,055 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/residue.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,057 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/frame.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,060 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/topology.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,062 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/property.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,064 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/libchemfiles.so -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,156 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/selection.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,158 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/cell.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,160 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/clib.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,162 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/misc.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,165 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/trajectory.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,167 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/atom.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,169 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/utils.py -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,171 copying _skbuild/linux-armv7l-3.7/setuptools/lib/chemfiles/libchemfiles.so.0.10.1 -> _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles 2021-07-31T14:11:18,264 copied 15 files 2021-07-31T14:11:18,264 running install_egg_info 2021-07-31T14:11:18,275 running egg_info 2021-07-31T14:11:18,276 creating chemfiles.egg-info 2021-07-31T14:11:18,276 writing chemfiles.egg-info/PKG-INFO 2021-07-31T14:11:18,279 writing dependency_links to chemfiles.egg-info/dependency_links.txt 2021-07-31T14:11:18,281 writing requirements to chemfiles.egg-info/requires.txt 2021-07-31T14:11:18,282 writing top-level names to chemfiles.egg-info/top_level.txt 2021-07-31T14:11:18,284 writing manifest file 'chemfiles.egg-info/SOURCES.txt' 2021-07-31T14:11:18,289 reading manifest file 'chemfiles.egg-info/SOURCES.txt' 2021-07-31T14:11:18,290 adding license file 'LICENSE' 2021-07-31T14:11:18,293 writing manifest file 'chemfiles.egg-info/SOURCES.txt' 2021-07-31T14:11:18,295 Copying chemfiles.egg-info to _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles-0.10.1-py3.7.egg-info 2021-07-31T14:11:18,309 running install_scripts 2021-07-31T14:11:18,397 copied 0 files 2021-07-31T14:11:18,414 adding license file "LICENSE" (matched pattern "LICENSE") 2021-07-31T14:11:18,418 creating _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel/chemfiles-0.10.1.dist-info/WHEEL 2021-07-31T14:11:18,421 creating '/tmp/pip-wheel-hzfjqrww/chemfiles-0.10.1-py2.py3-none-linux_armv7l.whl' and adding '_skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel' to it 2021-07-31T14:11:18,424 adding 'chemfiles/__init__.py' 2021-07-31T14:11:18,425 adding 'chemfiles/atom.py' 2021-07-31T14:11:18,427 adding 'chemfiles/cell.py' 2021-07-31T14:11:18,429 adding 'chemfiles/clib.py' 2021-07-31T14:11:18,435 adding 'chemfiles/ffi.py' 2021-07-31T14:11:18,437 adding 'chemfiles/frame.py' 2021-07-31T14:11:19,223 adding 'chemfiles/libchemfiles.so' 2021-07-31T14:11:20,030 adding 'chemfiles/libchemfiles.so.0.10.1' 2021-07-31T14:11:20,058 adding 'chemfiles/misc.py' 2021-07-31T14:11:20,059 adding 'chemfiles/property.py' 2021-07-31T14:11:20,061 adding 'chemfiles/residue.py' 2021-07-31T14:11:20,062 adding 'chemfiles/selection.py' 2021-07-31T14:11:20,064 adding 'chemfiles/topology.py' 2021-07-31T14:11:20,066 adding 'chemfiles/trajectory.py' 2021-07-31T14:11:20,067 adding 'chemfiles/utils.py' 2021-07-31T14:11:20,070 adding 'chemfiles-0.10.1.dist-info/LICENSE' 2021-07-31T14:11:20,071 adding 'chemfiles-0.10.1.dist-info/METADATA' 2021-07-31T14:11:20,072 adding 'chemfiles-0.10.1.dist-info/WHEEL' 2021-07-31T14:11:20,073 adding 'chemfiles-0.10.1.dist-info/top_level.txt' 2021-07-31T14:11:20,073 adding 'chemfiles-0.10.1.dist-info/RECORD' 2021-07-31T14:11:20,157 removing _skbuild/linux-armv7l-3.7/setuptools/bdist.linux-armv7l/wheel 2021-07-31T14:11:20,273 Building wheel for chemfiles (setup.py): finished with status 'done' 2021-07-31T14:11:20,310 Created wheel for chemfiles: filename=chemfiles-0.10.1-py2.py3-none-linux_armv7l.whl size=3175286 sha256=37da2deccc58f6c1079b3890f091555c42f58692a2f917b049c49ca8faf274d1 2021-07-31T14:11:20,310 Stored in directory: /tmp/pip-ephem-wheel-cache-rwsc4qiy/wheels/94/d7/80/ea7d04cdd350e372ce35e0cf4fcbc5b0b2d162ff76a0a586ce 2021-07-31T14:11:20,321 Successfully built chemfiles 2021-07-31T14:11:20,449 Removed build tracker: '/tmp/pip-req-tracker-myt8bplb'