2021-08-04T15:28:19,007 Created temporary directory: /tmp/pip-ephem-wheel-cache-ehv9ak69
2021-08-04T15:28:19,013 Created temporary directory: /tmp/pip-req-tracker-b1stmuxs
2021-08-04T15:28:19,014 Initialized build tracking at /tmp/pip-req-tracker-b1stmuxs
2021-08-04T15:28:19,015 Created build tracker: /tmp/pip-req-tracker-b1stmuxs
2021-08-04T15:28:19,015 Entered build tracker: /tmp/pip-req-tracker-b1stmuxs
2021-08-04T15:28:19,017 Created temporary directory: /tmp/pip-wheel-3wclkrji
2021-08-04T15:28:19,083 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-08-04T15:28:19,084 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-08-04T15:28:19,085 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-08-04T15:28:19,085 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-08-04T15:28:19,086 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-08-04T15:28:19,089 WARNING: Url '/pele-platform/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-08-04T15:28:19,090 WARNING: Url 't/pele-platform/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-08-04T15:28:19,090 WARNING: Url 'm/pele-platform/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-08-04T15:28:19,091 WARNING: Url 'p/pele-platform/' is ignored. It is either a non-existing path or lacks a specific scheme.
2021-08-04T15:28:19,092 1 location(s) to search for versions of pele-platform:
2021-08-04T15:28:19,092 * https://pypi.org/simple/pele-platform/
2021-08-04T15:28:19,093 Fetching project page and analyzing links: https://pypi.org/simple/pele-platform/
2021-08-04T15:28:19,095 Getting page https://pypi.org/simple/pele-platform/
2021-08-04T15:28:19,099 Found index url https://pypi.org/simple
2021-08-04T15:28:19,463   Found link https://files.pythonhosted.org/packages/f0/ac/9497572d7da4e501c8dddc3be3fa338744dbc27b67eb09275b8375fae2fd/pele_platform-1.0.0.1.tar.gz#sha256=e3c8bde654fe3d249714c4ddb1d3471944752f6840a6bcf4b399a3466931b838 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.1
2021-08-04T15:28:19,465   Found link https://files.pythonhosted.org/packages/79/a0/d1b4b9269c3fe9dd2edc878a2dec9d3f4e7701cc932272169f44a025c2a9/pele_platform-1.0.0.2.tar.gz#sha256=919f487c943e6e71a8d82e56dac3051605ffdc6a680d168b5233cea95c9e4701 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.2
2021-08-04T15:28:19,466   Found link https://files.pythonhosted.org/packages/a3/56/3cc9eb3b0ecf0943c4f4eb5b0729cd54906290f84dc4cfb230ad69ce99c6/pele_platform-1.0.0.3.tar.gz#sha256=ea4f3df0aeb65812e72eb9b24605146a7afeeb7f89ce7f769058c2e894654239 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.3
2021-08-04T15:28:19,467   Found link https://files.pythonhosted.org/packages/d0/6d/1ac79163749b10c7f694dde1db24063d4e2f57bcf365db1b8cfa1b9f7f57/pele_platform-1.1.0.tar.gz#sha256=25a644fc27c0c364bfece9addd278a74a5a7ea5f4ab40b31fa8cd961e7485a65 (from https://pypi.org/simple/pele-platform/), version: 1.1.0
2021-08-04T15:28:19,468   Found link https://files.pythonhosted.org/packages/fd/15/306ea35b1d4be507caf1613d05fc16c076f070c2a16e6283a331695fcb5e/pele_platform-1.2.0.tar.gz#sha256=2967a976bafc47884ca49864ca87d40d87aa50c2fc57900c1f0517e84e789153 (from https://pypi.org/simple/pele-platform/), version: 1.2.0
2021-08-04T15:28:19,468   Found link https://files.pythonhosted.org/packages/74/98/cf2442f668f8ad6be1838c3ce7b87a409eee7448a1d7d033862ad0bda36c/pele_platform-1.2.1.tar.gz#sha256=5d30d563960934362ac79eb7a24b8f4b831076dba29bbb498901a0b0a1dca367 (from https://pypi.org/simple/pele-platform/), version: 1.2.1
2021-08-04T15:28:19,469   Found link https://files.pythonhosted.org/packages/1a/78/29b2eb73308b595668a9c22abd93ac88f82c49ebc6b004f332a774166391/pele_platform-1.2.2.tar.gz#sha256=00f579740db5455cea04c82e86b87c8f53045496ba61d9f4e96436f1d0cdfb08 (from https://pypi.org/simple/pele-platform/), version: 1.2.2
2021-08-04T15:28:19,470   Found link https://files.pythonhosted.org/packages/fb/6b/85f262d33a080377ea5202d5779c9402c23aaefc4e1b04bb94d9432aad42/pele_platform-1.2.3.tar.gz#sha256=18713b6811d7689accb54dde5429aa5225dcb8e520164fd7b4037453c63f74d9 (from https://pypi.org/simple/pele-platform/), version: 1.2.3
2021-08-04T15:28:19,472   Found link https://files.pythonhosted.org/packages/d5/15/707e6b89f0ee479d173ef2fe6a41af1ff9d91dd86e45067da5cee56761d9/pele_platform-1.3.0.tar.gz#sha256=fb7fb5dd59f9e3a76d371be6aa0b013209752c464862bf944de6b2a2903424a9 (from https://pypi.org/simple/pele-platform/), version: 1.3.0
2021-08-04T15:28:19,473   Found link https://files.pythonhosted.org/packages/7c/b0/4fda3001d5f13010bc2005e335f799f24d2204fc700a847e28091b57fabb/pele_platform-1.3.1.tar.gz#sha256=c6c0ac764ae30ce8a0650cdf0fc686fd733cb6b11fc15e6cccd5659166be3b33 (from https://pypi.org/simple/pele-platform/), version: 1.3.1
2021-08-04T15:28:19,474   Found link https://files.pythonhosted.org/packages/34/21/2f68d91d200432e0feb4662f6ba5538817335d86df60688e3a6f050dd21b/pele_platform-1.3.2.tar.gz#sha256=14c6e236347a1101f5de04bc25a32f302904bdb46326fb151c14e930a28d7a48 (from https://pypi.org/simple/pele-platform/), version: 1.3.2
2021-08-04T15:28:19,475   Found link https://files.pythonhosted.org/packages/63/a6/ad0bc781b4089093fd8aca4d75d237e0c0ae9d1f6b7e4b86a733f5a91b10/pele_platform-1.3.3.tar.gz#sha256=9e9e49d359bde42485b1c2d23b8a80c3de43064a672c260d18b9f10b55ee666e (from https://pypi.org/simple/pele-platform/), version: 1.3.3
2021-08-04T15:28:19,476   Found link https://files.pythonhosted.org/packages/e7/6a/4d8e75e0dbff74b22c76f4640a72798acfe6f55e35dcf0e9080dc8f36857/pele_platform-1.3.4.tar.gz#sha256=b8f7a2caac267df0381e8a3d73ddfeaec60cccc22336aa76178dbf3d2b2e880b (from https://pypi.org/simple/pele-platform/), version: 1.3.4
2021-08-04T15:28:19,476   Found link https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 (from https://pypi.org/simple/pele-platform/), version: 1.4.0
2021-08-04T15:28:19,477   Found link https://files.pythonhosted.org/packages/ed/11/ff7cdcb7a17869082a94fc4c066a8bc6407a07f7c542c1dbc4919b1e091a/pele_platform-1.4.1.tar.gz#sha256=2f5327616aeff5be40d54b2771fd43b8cdb75086944c11800339bd44e0866c01 (from https://pypi.org/simple/pele-platform/), version: 1.4.1
2021-08-04T15:28:19,478   Found link https://files.pythonhosted.org/packages/4b/4f/fec23d74e8b1474fe25234fd34972a427234307dc9f7908f916e50036d81/pele_platform-1.4.2.tar.gz#sha256=c1092fb5c5cdb38736f621c434ff3112ea1cd1abc94d0bfe03ea7044b6e06612 (from https://pypi.org/simple/pele-platform/), version: 1.4.2
2021-08-04T15:28:19,479   Found link https://files.pythonhosted.org/packages/7a/b3/8eeb8c773a4fbf6561a929b8bab563f31384a0512a4708b4d0249ebc8c24/pele_platform-1.4.3.tar.gz#sha256=e491ac06c05301a846084e07ab709abf4b0507768710256443b6523b25339c40 (from https://pypi.org/simple/pele-platform/), version: 1.4.3
2021-08-04T15:28:19,480   Found link https://files.pythonhosted.org/packages/92/57/ff446766add00995f3fa0446f9c32ad52b759bab05d3f41e5ee51a8e76a8/pele_platform-1.4.4.tar.gz#sha256=eca94d45d76664106cff9915781740932635878b203b430d62f7aeb252ce59c7 (from https://pypi.org/simple/pele-platform/), version: 1.4.4
2021-08-04T15:28:19,481   Found link https://files.pythonhosted.org/packages/6d/f3/5ad1c5dab958edc8ecfb75883f8ac760308e570f3a0929104ba01a223f02/pele_platform-1.5.0.tar.gz#sha256=0b7eed2abd70f20caadcf9e9c8642cfc51d55d66ab114e42f0d425bfb6603323 (from https://pypi.org/simple/pele-platform/), version: 1.5.0
2021-08-04T15:28:19,482   Found link https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93 (from https://pypi.org/simple/pele-platform/), version: 1.5.1
2021-08-04T15:28:19,483   Found link https://files.pythonhosted.org/packages/05/85/4cfdad270ebf569727204cbc9de66f22ef802d5079846f2631e1e6a11059/pele_platform-1.6.0b1.tar.gz#sha256=a7b5e566ec00598a1991d44c8748267104e5a123f462365a584632c94b36a7bf (from https://pypi.org/simple/pele-platform/), version: 1.6.0b1
2021-08-04T15:28:19,484   Found link https://files.pythonhosted.org/packages/c0/d6/f49f102325943cd3a82086e4740dfabd416c278d21ef9f3097fc1bb0ba7a/pele_platform-1.6.0b2.tar.gz#sha256=6bf2be383e50f6654f49f87e44dfc548f2aa1f5f002b25089ae2089ab0a92654 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b2
2021-08-04T15:28:19,485   Found link https://files.pythonhosted.org/packages/f7/16/8db67212a622716e71ea8a9664e4da6207ae136369f2d1b3b802ca39baee/pele_platform-1.6.0b3.tar.gz#sha256=916a0f278c53e5eec786008a498654481c2e76b90b4385e75398872fd28b1f6e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b3
2021-08-04T15:28:19,486   Found link https://files.pythonhosted.org/packages/f3/46/ecebcaed96148f710c2aa716f1a4862033073dfe8c1da1c7283d32b766b4/pele_platform-1.6.0b4.tar.gz#sha256=1e6cdaab94470fa0de99010c2e51ed94e1634b14c9a53206b6f33e838616b361 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b4
2021-08-04T15:28:19,487   Found link https://files.pythonhosted.org/packages/7a/03/3f391e98e553a1cea233c87fe3d33171be5b3851fbf37869ccdfebca58c4/pele_platform-1.6.0b5.tar.gz#sha256=9e98fe723a6e9b2d67e7c95441f23bc98f550d4d824a47614981b39643e4781d (from https://pypi.org/simple/pele-platform/), version: 1.6.0b5
2021-08-04T15:28:19,487   Found link https://files.pythonhosted.org/packages/e1/28/b31c1b1b3daf0bc65f6c3d09cad23ec355868feb94787f0adc4407c60364/pele_platform-1.6.0b6.tar.gz#sha256=63327ad61bcbfa4e69c138e5ec38621194b929c5e271b21d01c359961fd8e805 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b6
2021-08-04T15:28:19,488   Found link https://files.pythonhosted.org/packages/3c/b6/8ebb9f0d293a32db481b1bd6e620d5b04e73b2bf516bcedbd22033f16016/pele_platform-1.6.0b7.tar.gz#sha256=e5e3a57d5eb74bf3f664714017549f773f71f325da381666f8f872c38c12d06e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b7
2021-08-04T15:28:19,489   Found link https://files.pythonhosted.org/packages/bf/83/ff52f07ec4bc23a134b0fcb5ea792d20ee925939a73bc0a2cc867e47378c/pele_platform-1.6.0rc1.tar.gz#sha256=34a396a464e091c199e16e4d7fdce545eb8e1acde49096d61f5c5f04a220b1d7 (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc1
2021-08-04T15:28:19,490   Found link https://files.pythonhosted.org/packages/43/3a/60b79f3dae3de9b5568620f8d2bf4fc3d2a80a2bf055d2699f962b5cdd27/pele_platform-1.6.0rc2.tar.gz#sha256=1056394184b738486172547f015fa65ca7830cec5605bb99c86741908b3db07a (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc2
2021-08-04T15:28:19,533 Given no hashes to check 1 links for project 'pele-platform': discarding no candidates
2021-08-04T15:28:19,566 Collecting pele-platform==1.6.0rc2
2021-08-04T15:28:19,570   Created temporary directory: /tmp/pip-unpack-ysrbg9pz
2021-08-04T15:28:22,730   Downloading pele_platform-1.6.0rc2.tar.gz (11.1 MB)
2021-08-04T15:28:35,021   Added pele-platform==1.6.0rc2 from https://files.pythonhosted.org/packages/43/3a/60b79f3dae3de9b5568620f8d2bf4fc3d2a80a2bf055d2699f962b5cdd27/pele_platform-1.6.0rc2.tar.gz#sha256=1056394184b738486172547f015fa65ca7830cec5605bb99c86741908b3db07a to build tracker '/tmp/pip-req-tracker-b1stmuxs'
2021-08-04T15:28:35,024     Running setup.py (path:/tmp/pip-wheel-3wclkrji/pele-platform_4cf1fd04cd4b48f586f0d539b0c57efb/setup.py) egg_info for package pele-platform
2021-08-04T15:28:35,025     Created temporary directory: /tmp/pip-pip-egg-info-xqei2tg6
2021-08-04T15:28:35,026     Running command python setup.py egg_info
2021-08-04T15:28:37,539     running egg_info
2021-08-04T15:28:37,545     creating /tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info
2021-08-04T15:28:37,549     writing requirements to /tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info/requires.txt
2021-08-04T15:28:37,552     writing /tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info/PKG-INFO
2021-08-04T15:28:37,556     writing dependency_links to /tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info/dependency_links.txt
2021-08-04T15:28:37,558     writing top-level names to /tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info/top_level.txt
2021-08-04T15:28:37,562     writing manifest file '/tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info/SOURCES.txt'
2021-08-04T15:28:37,613     reading manifest file '/tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info/SOURCES.txt'
2021-08-04T15:28:37,617     reading manifest template 'MANIFEST.in'
2021-08-04T15:28:37,620     warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2021-08-04T15:28:37,621     warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2021-08-04T15:28:37,622     warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2021-08-04T15:28:37,622     warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2021-08-04T15:28:38,096     warning: no files found matching '*' under directory 'tests/data'
2021-08-04T15:28:38,143     writing manifest file '/tmp/pip-pip-egg-info-xqei2tg6/pele_platform.egg-info/SOURCES.txt'
2021-08-04T15:28:38,282   Source in /tmp/pip-wheel-3wclkrji/pele-platform_4cf1fd04cd4b48f586f0d539b0c57efb has version 1.6.0rc2, which satisfies requirement pele-platform==1.6.0rc2 from https://files.pythonhosted.org/packages/43/3a/60b79f3dae3de9b5568620f8d2bf4fc3d2a80a2bf055d2699f962b5cdd27/pele_platform-1.6.0rc2.tar.gz#sha256=1056394184b738486172547f015fa65ca7830cec5605bb99c86741908b3db07a
2021-08-04T15:28:38,284   Removed pele-platform==1.6.0rc2 from https://files.pythonhosted.org/packages/43/3a/60b79f3dae3de9b5568620f8d2bf4fc3d2a80a2bf055d2699f962b5cdd27/pele_platform-1.6.0rc2.tar.gz#sha256=1056394184b738486172547f015fa65ca7830cec5605bb99c86741908b3db07a from build tracker '/tmp/pip-req-tracker-b1stmuxs'
2021-08-04T15:28:38,293 Created temporary directory: /tmp/pip-unpack-4e68bg7c
2021-08-04T15:28:38,294 Building wheels for collected packages: pele-platform
2021-08-04T15:28:38,303   Created temporary directory: /tmp/pip-wheel-vpq2wb6g
2021-08-04T15:28:38,304   Building wheel for pele-platform (setup.py): started
2021-08-04T15:28:38,305   Destination directory: /tmp/pip-wheel-vpq2wb6g
2021-08-04T15:28:38,305   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3wclkrji/pele-platform_4cf1fd04cd4b48f586f0d539b0c57efb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3wclkrji/pele-platform_4cf1fd04cd4b48f586f0d539b0c57efb/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vpq2wb6g
2021-08-04T15:28:40,741   running bdist_wheel
2021-08-04T15:28:40,751   running build
2021-08-04T15:28:40,752   running build_py
2021-08-04T15:28:40,763   creating build
2021-08-04T15:28:40,764   creating build/lib
2021-08-04T15:28:40,766   creating build/lib/pele_platform
2021-08-04T15:28:40,769   copying pele_platform/main.py -> build/lib/pele_platform
2021-08-04T15:28:40,773   copying pele_platform/_version.py -> build/lib/pele_platform
2021-08-04T15:28:40,777   copying pele_platform/__init__.py -> build/lib/pele_platform
2021-08-04T15:28:40,782   creating build/lib/pele_platform/analysis
2021-08-04T15:28:40,785   copying pele_platform/analysis/pdf_report.py -> build/lib/pele_platform/analysis
2021-08-04T15:28:40,789   copying pele_platform/analysis/data.py -> build/lib/pele_platform/analysis
2021-08-04T15:28:40,800   copying pele_platform/analysis/interactive_plot.py -> build/lib/pele_platform/analysis
2021-08-04T15:28:40,808   copying pele_platform/analysis/__init__.py -> build/lib/pele_platform/analysis
2021-08-04T15:28:40,812   copying pele_platform/analysis/plot.py -> build/lib/pele_platform/analysis
2021-08-04T15:28:40,818   copying pele_platform/analysis/analysis.py -> build/lib/pele_platform/analysis
2021-08-04T15:28:40,830   copying pele_platform/analysis/clustering.py -> build/lib/pele_platform/analysis
2021-08-04T15:28:40,839   creating build/lib/pele_platform/site_finder
2021-08-04T15:28:40,842   copying pele_platform/site_finder/main.py -> build/lib/pele_platform/site_finder
2021-08-04T15:28:40,849   copying pele_platform/site_finder/__init__.py -> build/lib/pele_platform/site_finder
2021-08-04T15:28:40,855   creating build/lib/pele_platform/features
2021-08-04T15:28:40,858   copying pele_platform/features/adaptive.py -> build/lib/pele_platform/features
2021-08-04T15:28:40,866   copying pele_platform/features/frag.py -> build/lib/pele_platform/features
2021-08-04T15:28:40,872   copying pele_platform/features/__init__.py -> build/lib/pele_platform/features
2021-08-04T15:28:40,878   creating build/lib/pele_platform/covalent_docking
2021-08-04T15:28:40,881   copying pele_platform/covalent_docking/main.py -> build/lib/pele_platform/covalent_docking
2021-08-04T15:28:40,888   copying pele_platform/covalent_docking/__init__.py -> build/lib/pele_platform/covalent_docking
2021-08-04T15:28:40,894   creating build/lib/pele_platform/Checker
2021-08-04T15:28:40,895   copying pele_platform/Checker/main.py -> build/lib/pele_platform/Checker
2021-08-04T15:28:40,901   copying pele_platform/Checker/environment_variables.py -> build/lib/pele_platform/Checker
2021-08-04T15:28:40,905   copying pele_platform/Checker/executable.py -> build/lib/pele_platform/Checker
2021-08-04T15:28:40,909   copying pele_platform/Checker/__init__.py -> build/lib/pele_platform/Checker
2021-08-04T15:28:40,914   copying pele_platform/Checker/valid_flags.py -> build/lib/pele_platform/Checker
2021-08-04T15:28:40,920   copying pele_platform/Checker/pdb_checker.py -> build/lib/pele_platform/Checker
2021-08-04T15:28:40,926   copying pele_platform/Checker/python_version.py -> build/lib/pele_platform/Checker
2021-08-04T15:28:40,933   creating build/lib/pele_platform/Frag
2021-08-04T15:28:40,935   copying pele_platform/Frag/checker.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,940   copying pele_platform/Frag/fragments.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,944   copying pele_platform/Frag/libraries.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,950   copying pele_platform/Frag/atoms.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,955   copying pele_platform/Frag/generative_model.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,961   copying pele_platform/Frag/helpers.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,968   copying pele_platform/Frag/__init__.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,973   copying pele_platform/Frag/analysis.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,978   copying pele_platform/Frag/simulation.py -> build/lib/pele_platform/Frag
2021-08-04T15:28:40,985   creating build/lib/pele_platform/out_in
2021-08-04T15:28:40,987   copying pele_platform/out_in/main.py -> build/lib/pele_platform/out_in
2021-08-04T15:28:40,991   copying pele_platform/out_in/__init__.py -> build/lib/pele_platform/out_in
2021-08-04T15:28:40,999   creating build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,001   copying pele_platform/Adaptive/pca.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,007   copying pele_platform/Adaptive/interaction_restrictions.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,013   copying pele_platform/Adaptive/plop_ligand_parametrization.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,017   copying pele_platform/Adaptive/metrics.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,021   copying pele_platform/Adaptive/box.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,025   copying pele_platform/Adaptive/plop_solvent.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,029   copying pele_platform/Adaptive/__init__.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,033   copying pele_platform/Adaptive/parametrizer.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,043   copying pele_platform/Adaptive/simulation.py -> build/lib/pele_platform/Adaptive
2021-08-04T15:28:41,053   creating build/lib/pele_platform/constants
2021-08-04T15:28:41,055   copying pele_platform/constants/pele_params.py -> build/lib/pele_platform/constants
2021-08-04T15:28:41,062   copying pele_platform/constants/constants.py -> build/lib/pele_platform/constants
2021-08-04T15:28:41,067   copying pele_platform/constants/__init__.py -> build/lib/pele_platform/constants
2021-08-04T15:28:41,072   creating build/lib/pele_platform/enzyme_engineering
2021-08-04T15:28:41,074   copying pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/lib/pele_platform/enzyme_engineering
2021-08-04T15:28:41,081   copying pele_platform/enzyme_engineering/__init__.py -> build/lib/pele_platform/enzyme_engineering
2021-08-04T15:28:41,087   creating build/lib/pele_platform/RNA
2021-08-04T15:28:41,090   copying pele_platform/RNA/prep.py -> build/lib/pele_platform/RNA
2021-08-04T15:28:41,096   copying pele_platform/RNA/__init__.py -> build/lib/pele_platform/RNA
2021-08-04T15:28:41,100   creating build/lib/pele_platform/gpcr
2021-08-04T15:28:41,102   copying pele_platform/gpcr/main.py -> build/lib/pele_platform/gpcr
2021-08-04T15:28:41,107   copying pele_platform/gpcr/__init__.py -> build/lib/pele_platform/gpcr
2021-08-04T15:28:41,111   creating build/lib/pele_platform/Utilities
2021-08-04T15:28:41,113   copying pele_platform/Utilities/__init__.py -> build/lib/pele_platform/Utilities
2021-08-04T15:28:41,120   creating build/lib/pele_platform/PPI
2021-08-04T15:28:41,123   copying pele_platform/PPI/cluster.py -> build/lib/pele_platform/PPI
2021-08-04T15:28:41,129   copying pele_platform/PPI/simulation_launcher.py -> build/lib/pele_platform/PPI
2021-08-04T15:28:41,135   copying pele_platform/PPI/preparation.py -> build/lib/pele_platform/PPI
2021-08-04T15:28:41,140   copying pele_platform/PPI/main.py -> build/lib/pele_platform/PPI
2021-08-04T15:28:41,145   copying pele_platform/PPI/__init__.py -> build/lib/pele_platform/PPI
2021-08-04T15:28:41,149   creating build/lib/pele_platform/Errors
2021-08-04T15:28:41,151   copying pele_platform/Errors/__init__.py -> build/lib/pele_platform/Errors
2021-08-04T15:28:41,154   copying pele_platform/Errors/custom_errors.py -> build/lib/pele_platform/Errors
2021-08-04T15:28:41,162   creating build/lib/pele_platform/Frag/parameters
2021-08-04T15:28:41,165   copying pele_platform/Frag/parameters/files.py -> build/lib/pele_platform/Frag/parameters
2021-08-04T15:28:41,171   copying pele_platform/Frag/parameters/metrics.py -> build/lib/pele_platform/Frag/parameters
2021-08-04T15:28:41,177   copying pele_platform/Frag/parameters/water.py -> build/lib/pele_platform/Frag/parameters
2021-08-04T15:28:41,181   copying pele_platform/Frag/parameters/optional.py -> build/lib/pele_platform/Frag/parameters
2021-08-04T15:28:41,186   copying pele_platform/Frag/parameters/__init__.py -> build/lib/pele_platform/Frag/parameters
2021-08-04T15:28:41,190   copying pele_platform/Frag/parameters/simulation.py -> build/lib/pele_platform/Frag/parameters
2021-08-04T15:28:41,201   creating build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,203   copying pele_platform/Utilities/Helpers/map_atoms.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,209   copying pele_platform/Utilities/Helpers/template_builder.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,213   copying pele_platform/Utilities/Helpers/yaml_parser.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,220   copying pele_platform/Utilities/Helpers/bestStructs.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,226   copying pele_platform/Utilities/Helpers/protein_wizard.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,232   copying pele_platform/Utilities/Helpers/randomize.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,240   copying pele_platform/Utilities/Helpers/plop_launcher.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,245   copying pele_platform/Utilities/Helpers/launcher.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,250   copying pele_platform/Utilities/Helpers/conda_deployment.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,254   copying pele_platform/Utilities/Helpers/system_prep.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,260   copying pele_platform/Utilities/Helpers/center_of_mass.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,265   copying pele_platform/Utilities/Helpers/interaction_constraints.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,272   copying pele_platform/Utilities/Helpers/helpers.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,280   copying pele_platform/Utilities/Helpers/water.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,287   copying pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,292   copying pele_platform/Utilities/Helpers/__init__.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,297   copying pele_platform/Utilities/Helpers/ligand_conformations.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,301   copying pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,310   copying pele_platform/Utilities/Helpers/simulation.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,317   copying pele_platform/Utilities/Helpers/missing_residues.py -> build/lib/pele_platform/Utilities/Helpers
2021-08-04T15:28:41,324   creating build/lib/pele_platform/Utilities/Parameters
2021-08-04T15:28:41,326   copying pele_platform/Utilities/Parameters/parameters.py -> build/lib/pele_platform/Utilities/Parameters
2021-08-04T15:28:41,332   copying pele_platform/Utilities/Parameters/__init__.py -> build/lib/pele_platform/Utilities/Parameters
2021-08-04T15:28:41,337   creating build/lib/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:41,339   copying pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:41,345   copying pele_platform/Utilities/Helpers/Metals/__init__.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:41,350   copying pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:41,360   creating build/lib/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:41,363   copying pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:41,369   copying pele_platform/Utilities/Helpers/constraints/__init__.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:41,372   copying pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:41,378   creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-08-04T15:28:41,381   copying pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-08-04T15:28:41,386   copying pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-08-04T15:28:41,393   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-08-04T15:28:41,396   copying pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-08-04T15:28:41,405   copying pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-08-04T15:28:41,410   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-08-04T15:28:41,412   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-08-04T15:28:41,416   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-08-04T15:28:41,420   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-08-04T15:28:41,423   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-08-04T15:28:41,428   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-08-04T15:28:41,435   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-08-04T15:28:41,438   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-08-04T15:28:41,444   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-08-04T15:28:41,449   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-08-04T15:28:41,451   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-08-04T15:28:41,455   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-08-04T15:28:41,460   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-08-04T15:28:41,462   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-08-04T15:28:41,467   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-08-04T15:28:41,473   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-08-04T15:28:41,475   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-08-04T15:28:41,481   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-08-04T15:28:41,488   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-08-04T15:28:41,490   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-08-04T15:28:41,495   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-08-04T15:28:41,498   running egg_info
2021-08-04T15:28:41,518   writing pele_platform.egg-info/PKG-INFO
2021-08-04T15:28:41,522   writing top-level names to pele_platform.egg-info/top_level.txt
2021-08-04T15:28:41,525   writing requirements to pele_platform.egg-info/requires.txt
2021-08-04T15:28:41,527   writing dependency_links to pele_platform.egg-info/dependency_links.txt
2021-08-04T15:28:41,572   reading manifest file 'pele_platform.egg-info/SOURCES.txt'
2021-08-04T15:28:41,600   reading manifest template 'MANIFEST.in'
2021-08-04T15:28:41,602   warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2021-08-04T15:28:41,603   warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2021-08-04T15:28:41,604   warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2021-08-04T15:28:41,604   warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2021-08-04T15:28:42,073   warning: no files found matching '*' under directory 'tests/data'
2021-08-04T15:28:42,144   writing manifest file 'pele_platform.egg-info/SOURCES.txt'
2021-08-04T15:28:42,253   creating build/lib/pele_platform/Examples
2021-08-04T15:28:42,255   copying pele_platform/Examples/test.sl -> build/lib/pele_platform/Examples
2021-08-04T15:28:42,260   creating build/lib/pele_platform/Examples/Adaptive
2021-08-04T15:28:42,263   copying pele_platform/Examples/Adaptive/STR.rot.assign -> build/lib/pele_platform/Examples/Adaptive
2021-08-04T15:28:42,268   copying pele_platform/Examples/Adaptive/adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2021-08-04T15:28:42,273   copying pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2021-08-04T15:28:42,279   copying pele_platform/Examples/Adaptive/strz -> build/lib/pele_platform/Examples/Adaptive
2021-08-04T15:28:42,290   copying pele_platform/Examples/Adaptive/test.sl -> build/lib/pele_platform/Examples/Adaptive
2021-08-04T15:28:42,296   creating build/lib/pele_platform/Examples/Msm
2021-08-04T15:28:42,299   copying pele_platform/Examples/Msm/AS4_INIT.mae -> build/lib/pele_platform/Examples/Msm
2021-08-04T15:28:42,308   copying pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/lib/pele_platform/Examples/Msm
2021-08-04T15:28:42,346   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/lib/pele_platform/Examples/Msm
2021-08-04T15:28:42,385   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/lib/pele_platform/Examples/Msm
2021-08-04T15:28:42,423   copying pele_platform/Examples/Msm/PR_AS4.pdb -> build/lib/pele_platform/Examples/Msm
2021-08-04T15:28:42,461   copying pele_platform/Examples/Msm/input.yaml -> build/lib/pele_platform/Examples/Msm
2021-08-04T15:28:42,467   creating build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,470   copying pele_platform/Examples/PPI/1f47_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,477   copying pele_platform/Examples/PPI/1f47_prep.pdb -> build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,501   copying pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,508   copying pele_platform/Examples/PPI/1tnf_prep.pdb -> build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,571   copying pele_platform/Examples/PPI/input.yaml -> build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,577   copying pele_platform/Examples/PPI/input_folder.yaml -> build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,584   copying pele_platform/Examples/PPI/input_skipref.yaml -> build/lib/pele_platform/Examples/PPI
2021-08-04T15:28:42,590   creating build/lib/pele_platform/Examples/RNA
2021-08-04T15:28:42,592   copying pele_platform/Examples/RNA/2l94.yaml -> build/lib/pele_platform/Examples/RNA
2021-08-04T15:28:42,598   copying pele_platform/Examples/RNA/5C45_prep.pdb -> build/lib/pele_platform/Examples/RNA
2021-08-04T15:28:42,640   copying pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/lib/pele_platform/Examples/RNA
2021-08-04T15:28:42,683   copying pele_platform/Examples/RNA/input.yaml -> build/lib/pele_platform/Examples/RNA
2021-08-04T15:28:42,690   copying pele_platform/Examples/RNA/input_induced.yaml -> build/lib/pele_platform/Examples/RNA
2021-08-04T15:28:42,696   creating build/lib/pele_platform/Examples/analysis
2021-08-04T15:28:42,698   copying pele_platform/Examples/analysis/input.yaml -> build/lib/pele_platform/Examples/analysis
2021-08-04T15:28:42,705   copying pele_platform/Examples/analysis/input_flags.yaml -> build/lib/pele_platform/Examples/analysis
2021-08-04T15:28:42,712   copying pele_platform/Examples/analysis/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis
2021-08-04T15:28:42,716   copying pele_platform/Examples/analysis/input_xtc.yaml -> build/lib/pele_platform/Examples/analysis
2021-08-04T15:28:42,721   creating build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,722   copying pele_platform/Examples/analysis/data/MG.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,727   copying pele_platform/Examples/analysis/data/STR.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,731   copying pele_platform/Examples/analysis/data/adaptive.conf -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,737   copying pele_platform/Examples/analysis/data/input.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,743   copying pele_platform/Examples/analysis/data/input_flags.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,749   copying pele_platform/Examples/analysis/data/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,755   copying pele_platform/Examples/analysis/data/input_mae.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,760   copying pele_platform/Examples/analysis/data/mgz -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,764   copying pele_platform/Examples/analysis/data/pele.conf -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,768   copying pele_platform/Examples/analysis/data/strz -> build/lib/pele_platform/Examples/analysis/data
2021-08-04T15:28:42,772   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output
2021-08-04T15:28:42,774   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:42,777   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:42,784   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:42,790   copying pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:42,796   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:42,838   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:42,955   creating build/lib/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:42,958   copying pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:42,999   copying pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:43,040   copying pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:43,080   creating build/lib/pele_platform/Examples/analysis/data/output
2021-08-04T15:28:43,083   copying pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/lib/pele_platform/Examples/analysis/data/output
2021-08-04T15:28:43,090   creating build/lib/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:43,093   copying pele_platform/Examples/analysis/data/output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:43,100   copying pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:43,105   copying pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:43,143   creating build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-08-04T15:28:43,145   copying pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-08-04T15:28:43,187   copying pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-08-04T15:28:43,193   creating build/lib/pele_platform/Examples/analysis/data/output/synchronization
2021-08-04T15:28:43,196   copying pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/analysis/data/output/synchronization
2021-08-04T15:28:43,202   creating build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-08-04T15:28:43,205   copying pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-08-04T15:28:43,241   copying pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-08-04T15:28:43,278   creating build/lib/pele_platform/Examples/analysis/data/xtc
2021-08-04T15:28:43,280   copying pele_platform/Examples/analysis/data/xtc/summary.csv -> build/lib/pele_platform/Examples/analysis/data/xtc
2021-08-04T15:28:43,287   creating build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:43,289   copying pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:43,296   copying pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:43,303   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:43,309   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:43,315   creating build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2021-08-04T15:28:43,317   copying pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2021-08-04T15:28:43,334   creating build/lib/pele_platform/Examples/bias
2021-08-04T15:28:43,336   copying pele_platform/Examples/bias/complex.pdb -> build/lib/pele_platform/Examples/bias
2021-08-04T15:28:43,376   copying pele_platform/Examples/bias/input_defaults.yaml -> build/lib/pele_platform/Examples/bias
2021-08-04T15:28:43,382   creating build/lib/pele_platform/Examples/box
2021-08-04T15:28:43,385   copying pele_platform/Examples/box/input.yaml -> build/lib/pele_platform/Examples/box
2021-08-04T15:28:43,391   creating build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,394   copying pele_platform/Examples/checker/complex.pdb -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,443   copying pele_platform/Examples/checker/complex2.pdb -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,470   copying pele_platform/Examples/checker/complex_unk.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,539   copying pele_platform/Examples/checker/incompatible_flags.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,547   copying pele_platform/Examples/checker/input.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,555   copying pele_platform/Examples/checker/input_atom_string.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,563   copying pele_platform/Examples/checker/input_env.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,569   copying pele_platform/Examples/checker/input_map_atom_num.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,575   copying pele_platform/Examples/checker/input_map_atom_str.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,580   copying pele_platform/Examples/checker/input_pele_exec.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,584   copying pele_platform/Examples/checker/input_rotamer.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,590   copying pele_platform/Examples/checker/input_space.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,596   copying pele_platform/Examples/checker/input_tab.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,603   copying pele_platform/Examples/checker/input_template.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,608   copying pele_platform/Examples/checker/input_underscore.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,613   copying pele_platform/Examples/checker/input_unk.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,617   copying pele_platform/Examples/checker/ligand2.pdb -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,623   copying pele_platform/Examples/checker/mapping_complex.pdb -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,688   copying pele_platform/Examples/checker/multiple_simulations.yaml -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,694   copying pele_platform/Examples/checker/negative_residues.pdb -> build/lib/pele_platform/Examples/checker
2021-08-04T15:28:43,701   creating build/lib/pele_platform/Examples/clustering
2021-08-04T15:28:43,703   copying pele_platform/Examples/clustering/summary.csv -> build/lib/pele_platform/Examples/clustering
2021-08-04T15:28:43,710   creating build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,711   copying pele_platform/Examples/clustering/0/report_1 -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,717   copying pele_platform/Examples/clustering/0/report_2 -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,721   copying pele_platform/Examples/clustering/0/report_3 -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,726   copying pele_platform/Examples/clustering/0/report_4 -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,731   copying pele_platform/Examples/clustering/0/topologyMapping.txt -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,737   copying pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,809   copying pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,848   copying pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,917   copying pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-08-04T15:28:43,990   creating build/lib/pele_platform/Examples/clustering/0/clustering
2021-08-04T15:28:43,994   copying pele_platform/Examples/clustering/0/clustering/object.pkl -> build/lib/pele_platform/Examples/clustering/0/clustering
2021-08-04T15:28:44,220   copying pele_platform/Examples/clustering/0/clustering/summary.txt -> build/lib/pele_platform/Examples/clustering/0/clustering
2021-08-04T15:28:44,228   creating build/lib/pele_platform/Examples/clustering_xtc
2021-08-04T15:28:44,232   copying pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/lib/pele_platform/Examples/clustering_xtc
2021-08-04T15:28:44,240   creating build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,243   copying pele_platform/Examples/clustering_xtc/0/report_1 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,249   copying pele_platform/Examples/clustering_xtc/0/report_2 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,255   copying pele_platform/Examples/clustering_xtc/0/report_3 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,261   copying pele_platform/Examples/clustering_xtc/0/report_4 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,266   copying pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,303   copying pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,315   copying pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,325   copying pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,334   copying pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:44,343   creating build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,347   copying pele_platform/Examples/constraints/1zop.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,379   copying pele_platform/Examples/constraints/4l3a_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,433   copying pele_platform/Examples/constraints/4qnr_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,487   copying pele_platform/Examples/constraints/4w4o_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,522   copying pele_platform/Examples/constraints/4w5i_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,556   copying pele_platform/Examples/constraints/4zu9_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,670   copying pele_platform/Examples/constraints/ca_constraints.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,738   copying pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,783   copying pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,791   copying pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,798   copying pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,806   copying pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,813   copying pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,819   copying pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,824   copying pele_platform/Examples/constraints/input_external_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,829   copying pele_platform/Examples/constraints/input_ignore.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,835   copying pele_platform/Examples/constraints/input_k.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,840   copying pele_platform/Examples/constraints/input_metals.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,846   copying pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,851   copying pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,856   copying pele_platform/Examples/constraints/input_smiles_error.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,862   copying pele_platform/Examples/constraints/input_square_planar.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,867   copying pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,872   copying pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,878   copying pele_platform/Examples/constraints/no_connects.pdb -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,883   copying pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-08-04T15:28:44,888   creating build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:44,891   copying pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:44,950   copying pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:45,005   copying pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:45,045   copying pele_platform/Examples/covalent_docking/input1.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:45,053   copying pele_platform/Examples/covalent_docking/input2.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:45,059   copying pele_platform/Examples/covalent_docking/input3.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:45,064   copying pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:45,070   copying pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-08-04T15:28:45,075   creating build/lib/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:45,078   copying pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:45,083   copying pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:45,089   copying pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:45,094   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-08-04T15:28:45,097   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-08-04T15:28:45,101   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:45,103   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:45,108   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:45,113   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:45,120   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:45,126   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2021-08-04T15:28:45,127   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-08-04T15:28:45,130   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-08-04T15:28:45,138   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2021-08-04T15:28:45,139   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2021-08-04T15:28:45,140   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-08-04T15:28:45,143   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-08-04T15:28:45,149   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:45,151   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:45,212   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:45,276   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:45,339   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:45,403   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:45,409   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:45,473   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-08-04T15:28:45,475   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-08-04T15:28:45,482   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-08-04T15:28:45,485   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-08-04T15:28:45,491   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-08-04T15:28:45,494   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-08-04T15:28:45,501   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-08-04T15:28:45,507   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:45,509   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:45,514   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:45,519   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:45,633   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:45,753   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:45,757   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:45,765   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:45,771   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:45,885   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:46,001   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-08-04T15:28:46,004   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-08-04T15:28:46,012   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:46,015   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:46,119   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:46,180   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:46,243   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:46,245   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:46,253   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:46,313   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:46,373   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:46,375   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:46,381   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:46,387   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:46,393   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:46,398   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:46,400   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:46,461   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:46,525   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:46,531   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:46,593   creating build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:46,595   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:46,657   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:46,721   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:46,786   creating build/lib/pele_platform/Examples/exit
2021-08-04T15:28:46,788   copying pele_platform/Examples/exit/input.yaml -> build/lib/pele_platform/Examples/exit
2021-08-04T15:28:46,793   copying pele_platform/Examples/exit/input_defaults.yaml -> build/lib/pele_platform/Examples/exit
2021-08-04T15:28:46,798   creating build/lib/pele_platform/Examples/exit_soft
2021-08-04T15:28:46,800   copying pele_platform/Examples/exit_soft/input.yaml -> build/lib/pele_platform/Examples/exit_soft
2021-08-04T15:28:46,805   copying pele_platform/Examples/exit_soft/input_defaults.yaml -> build/lib/pele_platform/Examples/exit_soft
2021-08-04T15:28:46,810   creating build/lib/pele_platform/Examples/flags
2021-08-04T15:28:46,812   copying pele_platform/Examples/flags/input.yaml -> build/lib/pele_platform/Examples/flags
2021-08-04T15:28:46,818   creating build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,820   copying pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,846   copying pele_platform/Examples/frag/1dyi_waters.pdb -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,873   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,923   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,973   copying pele_platform/Examples/frag/amino.pdb -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,980   copying pele_platform/Examples/frag/core.pdb -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,987   copying pele_platform/Examples/frag/flags.conf -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,993   copying pele_platform/Examples/frag/input_ai.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:46,998   copying pele_platform/Examples/frag/input_core.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,003   copying pele_platform/Examples/frag/input_core_sdf.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,008   copying pele_platform/Examples/frag/input_flags.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,015   copying pele_platform/Examples/frag/input_frag_waters.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,022   copying pele_platform/Examples/frag/input_fragment_atom.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,028   copying pele_platform/Examples/frag/input_lib_pdb.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,033   copying pele_platform/Examples/frag/input_lib_sdf.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,038   copying pele_platform/Examples/frag/input_point_analysis.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,043   copying pele_platform/Examples/frag/input_sim.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,048   copying pele_platform/Examples/frag/input_sim_xtc.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,053   copying pele_platform/Examples/frag/input_symmetry.yaml -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,058   copying pele_platform/Examples/frag/ligands.sdf -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,063   copying pele_platform/Examples/frag/ligands_water.sdf -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,069   copying pele_platform/Examples/frag/sequential.conf -> build/lib/pele_platform/Examples/frag
2021-08-04T15:28:47,074   creating build/lib/pele_platform/Examples/frag/analysis_data
2021-08-04T15:28:47,075   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1
2021-08-04T15:28:47,077   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result
2021-08-04T15:28:47,080   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result
2021-08-04T15:28:47,129   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result
2021-08-04T15:28:47,179   creating build/lib/pele_platform/Examples/frag/checker
2021-08-04T15:28:47,181   copying pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/checker
2021-08-04T15:28:47,186   copying pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/checker
2021-08-04T15:28:47,193   copying pele_platform/Examples/frag/checker/receptor.sdf -> build/lib/pele_platform/Examples/frag/checker
2021-08-04T15:28:47,225   creating build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-08-04T15:28:47,227   copying pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-08-04T15:28:47,234   copying pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-08-04T15:28:47,241   creating build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,243   copying pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,257   copying pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,309   copying pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,361   copying pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,369   copying pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,408   copying pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,426   copying pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,435   copying pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,442   copying pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,453   copying pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,458   copying pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,468   copying pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,473   copying pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,484   copying pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,491   copying pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,497   copying pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:47,577   creating build/lib/pele_platform/Examples/frag/sdf_test_lib
2021-08-04T15:28:47,580   copying pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/lib/pele_platform/Examples/frag/sdf_test_lib
2021-08-04T15:28:47,587   creating build/lib/pele_platform/Examples/global
2021-08-04T15:28:47,590   copying pele_platform/Examples/global/input.yaml -> build/lib/pele_platform/Examples/global
2021-08-04T15:28:47,596   copying pele_platform/Examples/global/input_defaults.yaml -> build/lib/pele_platform/Examples/global
2021-08-04T15:28:47,601   copying pele_platform/Examples/global/input_inputs.yaml -> build/lib/pele_platform/Examples/global
2021-08-04T15:28:47,605   copying pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/lib/pele_platform/Examples/global
2021-08-04T15:28:47,610   creating build/lib/pele_platform/Examples/gpcr
2021-08-04T15:28:47,612   copying pele_platform/Examples/gpcr/complex.pdb -> build/lib/pele_platform/Examples/gpcr
2021-08-04T15:28:47,652   copying pele_platform/Examples/gpcr/complex_processed.pdb -> build/lib/pele_platform/Examples/gpcr
2021-08-04T15:28:47,693   copying pele_platform/Examples/gpcr/input.yaml -> build/lib/pele_platform/Examples/gpcr
2021-08-04T15:28:47,698   copying pele_platform/Examples/gpcr/input_atom_error.yaml -> build/lib/pele_platform/Examples/gpcr
2021-08-04T15:28:47,704   copying pele_platform/Examples/gpcr/input_defaults.yaml -> build/lib/pele_platform/Examples/gpcr
2021-08-04T15:28:47,710   copying pele_platform/Examples/gpcr/input_defaults2.yaml -> build/lib/pele_platform/Examples/gpcr
2021-08-04T15:28:47,716   creating build/lib/pele_platform/Examples/induced_fit
2021-08-04T15:28:47,719   copying pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-08-04T15:28:47,723   copying pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-08-04T15:28:47,728   copying pele_platform/Examples/induced_fit/input_fast.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-08-04T15:28:47,732   copying pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-08-04T15:28:47,737   copying pele_platform/Examples/induced_fit/input_mae.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-08-04T15:28:47,742   creating build/lib/pele_platform/Examples/inputs
2021-08-04T15:28:47,745   copying pele_platform/Examples/inputs/input.yaml -> build/lib/pele_platform/Examples/inputs
2021-08-04T15:28:47,752   copying pele_platform/Examples/inputs/mn4.sl -> build/lib/pele_platform/Examples/inputs
2021-08-04T15:28:47,758   copying pele_platform/Examples/inputs/nord3.sge -> build/lib/pele_platform/Examples/inputs
2021-08-04T15:28:47,765   creating build/lib/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:47,767   copying pele_platform/Examples/interaction_restrictions/complex.pdb -> build/lib/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:47,834   copying pele_platform/Examples/interaction_restrictions/input.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:47,839   copying pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:47,845   copying pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:47,851   creating build/lib/pele_platform/Examples/interaction_restrictions/out
2021-08-04T15:28:47,854   copying pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2021-08-04T15:28:47,861   copying pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2021-08-04T15:28:47,865   creating build/lib/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:47,867   copying pele_platform/Examples/ligand_conformations/1.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:47,872   copying pele_platform/Examples/ligand_conformations/2.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:47,878   copying pele_platform/Examples/ligand_conformations/3.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:47,884   copying pele_platform/Examples/ligand_conformations/input.yaml -> build/lib/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:47,891   creating build/lib/pele_platform/Examples/minimum_steps
2021-08-04T15:28:47,895   copying pele_platform/Examples/minimum_steps/complex.pdb -> build/lib/pele_platform/Examples/minimum_steps
2021-08-04T15:28:47,964   copying pele_platform/Examples/minimum_steps/input.yaml -> build/lib/pele_platform/Examples/minimum_steps
2021-08-04T15:28:47,971   creating build/lib/pele_platform/Examples/out_in
2021-08-04T15:28:47,975   copying pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/lib/pele_platform/Examples/out_in
2021-08-04T15:28:48,018   copying pele_platform/Examples/out_in/input.yaml -> build/lib/pele_platform/Examples/out_in
2021-08-04T15:28:48,026   copying pele_platform/Examples/out_in/input_box_center.yaml -> build/lib/pele_platform/Examples/out_in
2021-08-04T15:28:48,034   copying pele_platform/Examples/out_in/input_default.yaml -> build/lib/pele_platform/Examples/out_in
2021-08-04T15:28:48,042   copying pele_platform/Examples/out_in/input_flag_error.yaml -> build/lib/pele_platform/Examples/out_in
2021-08-04T15:28:48,048   copying pele_platform/Examples/out_in/input_metrics.yaml -> build/lib/pele_platform/Examples/out_in
2021-08-04T15:28:48,054   creating build/lib/pele_platform/Examples/pca
2021-08-04T15:28:48,057   copying pele_platform/Examples/pca/1.pdb -> build/lib/pele_platform/Examples/pca
2021-08-04T15:28:48,101   copying pele_platform/Examples/pca/2.pdb -> build/lib/pele_platform/Examples/pca
2021-08-04T15:28:48,145   copying pele_platform/Examples/pca/3.pdb -> build/lib/pele_platform/Examples/pca
2021-08-04T15:28:48,187   copying pele_platform/Examples/pca/input.yaml -> build/lib/pele_platform/Examples/pca
2021-08-04T15:28:48,193   copying pele_platform/Examples/pca/input_str.yaml -> build/lib/pele_platform/Examples/pca
2021-08-04T15:28:48,199   creating build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,202   copying pele_platform/Examples/preparation/6qmk_correct.pdb -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,252   copying pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,308   copying pele_platform/Examples/preparation/complex.pdb -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,344   copying pele_platform/Examples/preparation/complex_2.pdb -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,401   copying pele_platform/Examples/preparation/input.yaml -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,406   copying pele_platform/Examples/preparation/input_nonstandard.yaml -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,411   copying pele_platform/Examples/preparation/input_space.yaml -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,416   copying pele_platform/Examples/preparation/parametrization_flags.yaml -> build/lib/pele_platform/Examples/preparation
2021-08-04T15:28:48,422   creating build/lib/pele_platform/Examples/production
2021-08-04T15:28:48,425   copying pele_platform/Examples/production/input.sl -> build/lib/pele_platform/Examples/production
2021-08-04T15:28:48,432   copying pele_platform/Examples/production/input_mae.yaml -> build/lib/pele_platform/Examples/production
2021-08-04T15:28:48,438   creating build/lib/pele_platform/Examples/rescoring
2021-08-04T15:28:48,440   copying pele_platform/Examples/rescoring/input.yaml -> build/lib/pele_platform/Examples/rescoring
2021-08-04T15:28:48,445   copying pele_platform/Examples/rescoring/input_defaults.yaml -> build/lib/pele_platform/Examples/rescoring
2021-08-04T15:28:48,450   creating build/lib/pele_platform/Examples/restart
2021-08-04T15:28:48,452   copying pele_platform/Examples/restart/restart.yaml -> build/lib/pele_platform/Examples/restart
2021-08-04T15:28:48,456   creating build/lib/pele_platform/Examples/singularity
2021-08-04T15:28:48,459   copying pele_platform/Examples/singularity/input_adaptive.yaml -> build/lib/pele_platform/Examples/singularity
2021-08-04T15:28:48,464   copying pele_platform/Examples/singularity/input_frag.yaml -> build/lib/pele_platform/Examples/singularity
2021-08-04T15:28:48,468   creating build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,470   copying pele_platform/Examples/site_finder/complex.pdb -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,517   copying pele_platform/Examples/site_finder/global.yaml -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,524   copying pele_platform/Examples/site_finder/input_folder.yaml -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,531   copying pele_platform/Examples/site_finder/input_global.yaml -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,537   copying pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,542   copying pele_platform/Examples/site_finder/input_restart.yaml -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,547   copying pele_platform/Examples/site_finder/input_skipref.yaml -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,552   copying pele_platform/Examples/site_finder/local.yaml -> build/lib/pele_platform/Examples/site_finder
2021-08-04T15:28:48,557   creating build/lib/pele_platform/Examples/tutorials
2021-08-04T15:28:48,557   creating build/lib/pele_platform/Examples/tutorials/gpcr
2021-08-04T15:28:48,560   copying pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/lib/pele_platform/Examples/tutorials/gpcr
2021-08-04T15:28:48,603   copying pele_platform/Examples/tutorials/gpcr/input.yaml -> build/lib/pele_platform/Examples/tutorials/gpcr
2021-08-04T15:28:48,609   creating build/lib/pele_platform/Examples/tutorials/induced_fit
2021-08-04T15:28:48,612   copying pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/lib/pele_platform/Examples/tutorials/induced_fit
2021-08-04T15:28:48,681   copying pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/lib/pele_platform/Examples/tutorials/induced_fit
2021-08-04T15:28:48,686   creating build/lib/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:48,688   copying pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:48,694   copying pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:48,718   copying pele_platform/Examples/tutorials/ppi/input.yaml -> build/lib/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:48,723   creating build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,727   copying pele_platform/Examples/water/complex_induced.pdb -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,746   copying pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,793   copying pele_platform/Examples/water/input_all.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,800   copying pele_platform/Examples/water/input_bs.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,805   copying pele_platform/Examples/water/input_bs_defaults.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,810   copying pele_platform/Examples/water/input_induced.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,815   copying pele_platform/Examples/water/input_lig.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,820   copying pele_platform/Examples/water/input_lig_defaults.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,825   copying pele_platform/Examples/water/input_nwaters.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,830   copying pele_platform/Examples/water/input_previous_water.yaml -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,835   copying pele_platform/Examples/water/water2_pele.conf -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,840   copying pele_platform/Examples/water/water_pele.conf -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,846   copying pele_platform/Examples/water/water_processed.pdb -> build/lib/pele_platform/Examples/water
2021-08-04T15:28:48,894   creating build/lib/pele_platform/Templates
2021-08-04T15:28:48,897   copying pele_platform/Templates/pele_template.conf -> build/lib/pele_platform/Templates
2021-08-04T15:28:48,905   copying pele_platform/Templates/solventParamsHCTOBC.txt -> build/lib/pele_platform/Templates
2021-08-04T15:28:48,916   copying pele_platform/Templates/template_adaptive.conf -> build/lib/pele_platform/Templates
2021-08-04T15:28:48,961   UPDATING build/lib/pele_platform/_version.py
2021-08-04T15:28:48,964   set build/lib/pele_platform/_version.py to '1.6.0rc2'
2021-08-04T15:28:48,970   installing to build/bdist.linux-armv7l/wheel
2021-08-04T15:28:48,971   running install
2021-08-04T15:28:48,973   running install_lib
2021-08-04T15:28:48,982   creating build/bdist.linux-armv7l
2021-08-04T15:28:48,982   creating build/bdist.linux-armv7l/wheel
2021-08-04T15:28:48,987   creating build/bdist.linux-armv7l/wheel/pele_platform
2021-08-04T15:28:48,990   creating build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:48,992   copying build/lib/pele_platform/analysis/pdf_report.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:48,997   copying build/lib/pele_platform/analysis/data.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:49,005   copying build/lib/pele_platform/analysis/interactive_plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:49,012   copying build/lib/pele_platform/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:49,016   copying build/lib/pele_platform/analysis/plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:49,022   copying build/lib/pele_platform/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:49,033   copying build/lib/pele_platform/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-08-04T15:28:49,040   creating build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-08-04T15:28:49,042   copying build/lib/pele_platform/site_finder/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-08-04T15:28:49,048   copying build/lib/pele_platform/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-08-04T15:28:49,055   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples
2021-08-04T15:28:49,060   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-08-04T15:28:49,063   copying build/lib/pele_platform/Examples/analysis/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-08-04T15:28:49,069   copying build/lib/pele_platform/Examples/analysis/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-08-04T15:28:49,073   copying build/lib/pele_platform/Examples/analysis/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-08-04T15:28:49,079   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,081   copying build/lib/pele_platform/Examples/analysis/data/MG.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,085   copying build/lib/pele_platform/Examples/analysis/data/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,089   copying build/lib/pele_platform/Examples/analysis/data/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,094   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:49,096   copying build/lib/pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:49,135   copying build/lib/pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:49,175   copying build/lib/pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-08-04T15:28:49,217   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output
2021-08-04T15:28:49,221   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:49,224   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:49,230   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:49,342   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:49,347   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:49,353   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-08-04T15:28:49,395   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2021-08-04T15:28:49,400   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-08-04T15:28:49,403   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-08-04T15:28:49,443   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-08-04T15:28:49,479   copying build/lib/pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2021-08-04T15:28:49,486   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2021-08-04T15:28:49,488   copying build/lib/pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2021-08-04T15:28:49,496   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:49,499   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-08-04T15:28:49,502   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-08-04T15:28:49,540   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-08-04T15:28:49,545   copying build/lib/pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:49,551   copying build/lib/pele_platform/Examples/analysis/data/output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:49,557   copying build/lib/pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-08-04T15:28:49,596   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2021-08-04T15:28:49,601   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2021-08-04T15:28:49,606   copying build/lib/pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2021-08-04T15:28:49,622   copying build/lib/pele_platform/Examples/analysis/data/xtc/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2021-08-04T15:28:49,628   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:49,631   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:49,636   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:49,642   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:49,650   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-08-04T15:28:49,658   copying build/lib/pele_platform/Examples/analysis/data/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,662   copying build/lib/pele_platform/Examples/analysis/data/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,668   copying build/lib/pele_platform/Examples/analysis/data/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,672   copying build/lib/pele_platform/Examples/analysis/data/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,677   copying build/lib/pele_platform/Examples/analysis/data/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,682   copying build/lib/pele_platform/Examples/analysis/data/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,686   copying build/lib/pele_platform/Examples/analysis/data/mgz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-08-04T15:28:49,690   copying build/lib/pele_platform/Examples/analysis/input_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-08-04T15:28:49,696   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,697   copying build/lib/pele_platform/Examples/checker/complex2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,723   copying build/lib/pele_platform/Examples/checker/input_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,726   copying build/lib/pele_platform/Examples/checker/ligand2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,731   copying build/lib/pele_platform/Examples/checker/multiple_simulations.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,735   copying build/lib/pele_platform/Examples/checker/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,739   copying build/lib/pele_platform/Examples/checker/input_atom_string.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,744   copying build/lib/pele_platform/Examples/checker/incompatible_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,750   copying build/lib/pele_platform/Examples/checker/input_env.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,755   copying build/lib/pele_platform/Examples/checker/input_map_atom_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,760   copying build/lib/pele_platform/Examples/checker/input_tab.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,763   copying build/lib/pele_platform/Examples/checker/input_pele_exec.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,767   copying build/lib/pele_platform/Examples/checker/input_rotamer.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,770   copying build/lib/pele_platform/Examples/checker/complex_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,834   copying build/lib/pele_platform/Examples/checker/input_template.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,840   copying build/lib/pele_platform/Examples/checker/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,845   copying build/lib/pele_platform/Examples/checker/negative_residues.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,851   copying build/lib/pele_platform/Examples/checker/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,898   copying build/lib/pele_platform/Examples/checker/input_underscore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,903   copying build/lib/pele_platform/Examples/checker/input_map_atom_num.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,908   copying build/lib/pele_platform/Examples/checker/mapping_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-08-04T15:28:49,977   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:49,979   copying build/lib/pele_platform/Examples/site_finder/input_restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:49,985   copying build/lib/pele_platform/Examples/site_finder/input_global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:49,990   copying build/lib/pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:49,996   copying build/lib/pele_platform/Examples/site_finder/global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:50,001   copying build/lib/pele_platform/Examples/site_finder/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:50,005   copying build/lib/pele_platform/Examples/site_finder/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:50,009   copying build/lib/pele_platform/Examples/site_finder/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:50,054   copying build/lib/pele_platform/Examples/site_finder/local.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-08-04T15:28:50,061   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2021-08-04T15:28:50,063   copying build/lib/pele_platform/Examples/clustering/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2021-08-04T15:28:50,071   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,075   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-08-04T15:28:50,078   copying build/lib/pele_platform/Examples/clustering/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-08-04T15:28:50,304   copying build/lib/pele_platform/Examples/clustering/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-08-04T15:28:50,310   copying build/lib/pele_platform/Examples/clustering/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,316   copying build/lib/pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,354   copying build/lib/pele_platform/Examples/clustering/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,360   copying build/lib/pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,430   copying build/lib/pele_platform/Examples/clustering/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,436   copying build/lib/pele_platform/Examples/clustering/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,441   copying build/lib/pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,510   copying build/lib/pele_platform/Examples/clustering/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,515   copying build/lib/pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-08-04T15:28:50,587   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-08-04T15:28:50,589   copying build/lib/pele_platform/Examples/production/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-08-04T15:28:50,595   copying build/lib/pele_platform/Examples/production/input.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-08-04T15:28:50,602   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,604   copying build/lib/pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,642   copying build/lib/pele_platform/Examples/covalent_docking/input1.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,648   copying build/lib/pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,708   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,713   copying build/lib/pele_platform/Examples/covalent_docking/input2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,718   copying build/lib/pele_platform/Examples/covalent_docking/input3.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,723   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,728   copying build/lib/pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-08-04T15:28:50,780   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-08-04T15:28:50,782   copying build/lib/pele_platform/Examples/exit_soft/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-08-04T15:28:50,787   copying build/lib/pele_platform/Examples/exit_soft/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-08-04T15:28:50,792   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-08-04T15:28:50,794   copying build/lib/pele_platform/Examples/inputs/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-08-04T15:28:50,799   copying build/lib/pele_platform/Examples/inputs/nord3.sge -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-08-04T15:28:50,805   copying build/lib/pele_platform/Examples/inputs/mn4.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-08-04T15:28:50,812   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-08-04T15:28:50,814   copying build/lib/pele_platform/Examples/bias/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-08-04T15:28:50,819   copying build/lib/pele_platform/Examples/bias/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-08-04T15:28:50,857   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,859   copying build/lib/pele_platform/Examples/water/water2_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,863   copying build/lib/pele_platform/Examples/water/input_lig_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,867   copying build/lib/pele_platform/Examples/water/input_lig.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,871   copying build/lib/pele_platform/Examples/water/input_bs_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,875   copying build/lib/pele_platform/Examples/water/complex_induced.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,893   copying build/lib/pele_platform/Examples/water/input_nwaters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,898   copying build/lib/pele_platform/Examples/water/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,903   copying build/lib/pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,947   copying build/lib/pele_platform/Examples/water/input_all.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,951   copying build/lib/pele_platform/Examples/water/water_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:50,997   copying build/lib/pele_platform/Examples/water/input_previous_water.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:51,002   copying build/lib/pele_platform/Examples/water/water_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:51,008   copying build/lib/pele_platform/Examples/water/input_bs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-08-04T15:28:51,015   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-08-04T15:28:51,017   copying build/lib/pele_platform/Examples/rescoring/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-08-04T15:28:51,022   copying build/lib/pele_platform/Examples/rescoring/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-08-04T15:28:51,027   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-08-04T15:28:51,029   copying build/lib/pele_platform/Examples/out_in/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-08-04T15:28:51,033   copying build/lib/pele_platform/Examples/out_in/input_metrics.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-08-04T15:28:51,037   copying build/lib/pele_platform/Examples/out_in/input_box_center.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-08-04T15:28:51,041   copying build/lib/pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-08-04T15:28:51,080   copying build/lib/pele_platform/Examples/out_in/input_default.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-08-04T15:28:51,085   copying build/lib/pele_platform/Examples/out_in/input_flag_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-08-04T15:28:51,091   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-08-04T15:28:51,094   copying build/lib/pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-08-04T15:28:51,100   copying build/lib/pele_platform/Examples/Adaptive/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-08-04T15:28:51,104   copying build/lib/pele_platform/Examples/Adaptive/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-08-04T15:28:51,108   copying build/lib/pele_platform/Examples/Adaptive/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-08-04T15:28:51,112   copying build/lib/pele_platform/Examples/Adaptive/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-08-04T15:28:51,122   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:51,124   copying build/lib/pele_platform/Examples/ligand_conformations/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:51,130   copying build/lib/pele_platform/Examples/ligand_conformations/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:51,135   copying build/lib/pele_platform/Examples/ligand_conformations/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:51,140   copying build/lib/pele_platform/Examples/ligand_conformations/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-08-04T15:28:51,146   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-08-04T15:28:51,148   copying build/lib/pele_platform/Examples/pca/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-08-04T15:28:51,187   copying build/lib/pele_platform/Examples/pca/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-08-04T15:28:51,191   copying build/lib/pele_platform/Examples/pca/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-08-04T15:28:51,229   copying build/lib/pele_platform/Examples/pca/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-08-04T15:28:51,268   copying build/lib/pele_platform/Examples/pca/input_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-08-04T15:28:51,273   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:51,275   copying build/lib/pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:51,279   copying build/lib/pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:51,283   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:51,286   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:51,349   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:51,410   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-08-04T15:28:51,471   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-08-04T15:28:51,473   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-08-04T15:28:51,481   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:51,485   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2021-08-04T15:28:51,489   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2021-08-04T15:28:51,494   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2021-08-04T15:28:51,498   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-08-04T15:28:51,501   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-08-04T15:28:51,509   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-08-04T15:28:51,511   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-08-04T15:28:51,515   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:51,521   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:51,522   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:51,528   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:51,590   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:51,651   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:51,711   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:51,772   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-08-04T15:28:51,833   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:51,837   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:51,846   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:51,906   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-08-04T15:28:51,970   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-08-04T15:28:51,974   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:51,977   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:52,090   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:52,097   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:52,291   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-08-04T15:28:52,300   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:52,304   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:52,310   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:52,424   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:52,431   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-08-04T15:28:52,551   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:52,556   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:52,620   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:52,685   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-08-04T15:28:52,794   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-08-04T15:28:52,803   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-08-04T15:28:52,807   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-08-04T15:28:52,816   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-08-04T15:28:52,821   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-08-04T15:28:52,824   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-08-04T15:28:52,830   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-08-04T15:28:52,835   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-08-04T15:28:52,840   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:52,847   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:52,851   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-08-04T15:28:52,858   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:52,861   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:52,871   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:52,875   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:52,882   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:52,941   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:53,004   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-08-04T15:28:53,064   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:53,068   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:53,072   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-08-04T15:28:53,076   copying build/lib/pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-08-04T15:28:53,081   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-08-04T15:28:53,083   copying build/lib/pele_platform/Examples/RNA/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-08-04T15:28:53,087   copying build/lib/pele_platform/Examples/RNA/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-08-04T15:28:53,092   copying build/lib/pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-08-04T15:28:53,133   copying build/lib/pele_platform/Examples/RNA/2l94.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-08-04T15:28:53,139   copying build/lib/pele_platform/Examples/RNA/5C45_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-08-04T15:28:53,183   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-08-04T15:28:53,185   copying build/lib/pele_platform/Examples/exit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-08-04T15:28:53,191   copying build/lib/pele_platform/Examples/exit/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-08-04T15:28:53,198   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2021-08-04T15:28:53,200   copying build/lib/pele_platform/Examples/restart/restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2021-08-04T15:28:53,207   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-08-04T15:28:53,209   copying build/lib/pele_platform/Examples/Msm/PR_AS4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-08-04T15:28:53,245   copying build/lib/pele_platform/Examples/Msm/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-08-04T15:28:53,251   copying build/lib/pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-08-04T15:28:53,288   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-08-04T15:28:53,326   copying build/lib/pele_platform/Examples/Msm/AS4_INIT.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-08-04T15:28:53,333   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-08-04T15:28:53,373   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-08-04T15:28:53,376   copying build/lib/pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-08-04T15:28:53,382   copying build/lib/pele_platform/Examples/induced_fit/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-08-04T15:28:53,387   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-08-04T15:28:53,392   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-08-04T15:28:53,395   copying build/lib/pele_platform/Examples/induced_fit/input_fast.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-08-04T15:28:53,400   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-08-04T15:28:53,402   copying build/lib/pele_platform/Examples/gpcr/complex_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-08-04T15:28:53,444   copying build/lib/pele_platform/Examples/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-08-04T15:28:53,449   copying build/lib/pele_platform/Examples/gpcr/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-08-04T15:28:53,453   copying build/lib/pele_platform/Examples/gpcr/input_atom_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-08-04T15:28:53,457   copying build/lib/pele_platform/Examples/gpcr/input_defaults2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-08-04T15:28:53,461   copying build/lib/pele_platform/Examples/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-08-04T15:28:53,504   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2021-08-04T15:28:53,506   copying build/lib/pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2021-08-04T15:28:53,512   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,514   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,518   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,526   copying build/lib/pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,561   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,569   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,573   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,579   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,588   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,593   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-08-04T15:28:53,600   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-08-04T15:28:53,601   copying build/lib/pele_platform/Examples/global/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-08-04T15:28:53,606   copying build/lib/pele_platform/Examples/global/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-08-04T15:28:53,609   copying build/lib/pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-08-04T15:28:53,614   copying build/lib/pele_platform/Examples/global/input_inputs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-08-04T15:28:53,620   copying build/lib/pele_platform/Examples/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples
2021-08-04T15:28:53,627   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2021-08-04T15:28:53,630   copying build/lib/pele_platform/Examples/box/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2021-08-04T15:28:53,635   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-08-04T15:28:53,637   copying build/lib/pele_platform/Examples/minimum_steps/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-08-04T15:28:53,641   copying build/lib/pele_platform/Examples/minimum_steps/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-08-04T15:28:53,706   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,708   copying build/lib/pele_platform/Examples/constraints/no_connects.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,713   copying build/lib/pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,718   copying build/lib/pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,724   copying build/lib/pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,729   copying build/lib/pele_platform/Examples/constraints/4w4o_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,762   copying build/lib/pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,766   copying build/lib/pele_platform/Examples/constraints/input_k.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,770   copying build/lib/pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,773   copying build/lib/pele_platform/Examples/constraints/4l3a_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,828   copying build/lib/pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,834   copying build/lib/pele_platform/Examples/constraints/ca_constraints.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,898   copying build/lib/pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,904   copying build/lib/pele_platform/Examples/constraints/input_metals.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,910   copying build/lib/pele_platform/Examples/constraints/input_smiles_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,915   copying build/lib/pele_platform/Examples/constraints/4w5i_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,947   copying build/lib/pele_platform/Examples/constraints/input_square_planar.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,951   copying build/lib/pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,955   copying build/lib/pele_platform/Examples/constraints/1zop.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,982   copying build/lib/pele_platform/Examples/constraints/input_ignore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:53,986   copying build/lib/pele_platform/Examples/constraints/4qnr_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:54,036   copying build/lib/pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:54,040   copying build/lib/pele_platform/Examples/constraints/input_external_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:54,044   copying build/lib/pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:54,084   copying build/lib/pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:54,090   copying build/lib/pele_platform/Examples/constraints/4zu9_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:54,201   copying build/lib/pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-08-04T15:28:54,212   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:54,214   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:54,220   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:54,226   copying build/lib/pele_platform/Examples/interaction_restrictions/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:54,233   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-08-04T15:28:54,235   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-08-04T15:28:54,241   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-08-04T15:28:54,247   copying build/lib/pele_platform/Examples/interaction_restrictions/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-08-04T15:28:54,314   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,316   copying build/lib/pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,321   copying build/lib/pele_platform/Examples/PPI/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,325   copying build/lib/pele_platform/Examples/PPI/1f47_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,331   copying build/lib/pele_platform/Examples/PPI/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,337   copying build/lib/pele_platform/Examples/PPI/1f47_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,359   copying build/lib/pele_platform/Examples/PPI/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,363   copying build/lib/pele_platform/Examples/PPI/1tnf_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-08-04T15:28:54,424   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-08-04T15:28:54,426   copying build/lib/pele_platform/Examples/singularity/input_adaptive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-08-04T15:28:54,432   copying build/lib/pele_platform/Examples/singularity/input_frag.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-08-04T15:28:54,439   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,441   copying build/lib/pele_platform/Examples/preparation/6qmk_correct.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,488   copying build/lib/pele_platform/Examples/preparation/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,492   copying build/lib/pele_platform/Examples/preparation/complex_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,549   copying build/lib/pele_platform/Examples/preparation/input_nonstandard.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,553   copying build/lib/pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,606   copying build/lib/pele_platform/Examples/preparation/parametrization_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,612   copying build/lib/pele_platform/Examples/preparation/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,617   copying build/lib/pele_platform/Examples/preparation/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-08-04T15:28:54,657   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2021-08-04T15:28:54,659   copying build/lib/pele_platform/Examples/flags/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2021-08-04T15:28:54,667   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials
2021-08-04T15:28:54,671   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-08-04T15:28:54,673   copying build/lib/pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-08-04T15:28:54,680   copying build/lib/pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-08-04T15:28:54,748   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-08-04T15:28:54,751   copying build/lib/pele_platform/Examples/tutorials/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-08-04T15:28:54,757   copying build/lib/pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-08-04T15:28:54,801   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:54,804   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:54,812   copying build/lib/pele_platform/Examples/tutorials/ppi/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:54,817   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-08-04T15:28:54,844   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,845   copying build/lib/pele_platform/Examples/frag/input_point_analysis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,850   copying build/lib/pele_platform/Examples/frag/1dyi_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,878   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-08-04T15:28:54,880   copying build/lib/pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-08-04T15:28:54,887   copying build/lib/pele_platform/Examples/frag/checker/receptor.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-08-04T15:28:54,919   copying build/lib/pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-08-04T15:28:54,924   copying build/lib/pele_platform/Examples/frag/ligands.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,930   copying build/lib/pele_platform/Examples/frag/input_sim.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,935   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,986   copying build/lib/pele_platform/Examples/frag/input_fragment_atom.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,992   copying build/lib/pele_platform/Examples/frag/input_ai.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:54,997   copying build/lib/pele_platform/Examples/frag/input_frag_waters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,003   copying build/lib/pele_platform/Examples/frag/input_core.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,008   copying build/lib/pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,033   copying build/lib/pele_platform/Examples/frag/flags.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,040   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-08-04T15:28:55,043   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-08-04T15:28:55,049   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-08-04T15:28:55,057   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,059   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,111   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,119   copying build/lib/pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,198   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,203   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,212   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,217   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,222   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,233   copying build/lib/pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,245   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,254   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,258   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,296   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,301   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,352   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,363   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-08-04T15:28:55,381   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,433   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2021-08-04T15:28:55,436   copying build/lib/pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2021-08-04T15:28:55,442   copying build/lib/pele_platform/Examples/frag/input_core_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,448   copying build/lib/pele_platform/Examples/frag/ligands_water.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,455   copying build/lib/pele_platform/Examples/frag/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,462   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data
2021-08-04T15:28:55,465   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1
2021-08-04T15:28:55,468   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result
2021-08-04T15:28:55,470   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result
2021-08-04T15:28:55,519   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_mol1C3-H2C1-H1/top_result
2021-08-04T15:28:55,569   copying build/lib/pele_platform/Examples/frag/input_symmetry.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,574   copying build/lib/pele_platform/Examples/frag/amino.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,580   copying build/lib/pele_platform/Examples/frag/core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,585   copying build/lib/pele_platform/Examples/frag/input_lib_pdb.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,589   copying build/lib/pele_platform/Examples/frag/input_sim_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,593   copying build/lib/pele_platform/Examples/frag/sequential.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,597   copying build/lib/pele_platform/Examples/frag/input_lib_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-08-04T15:28:55,602   creating build/bdist.linux-armv7l/wheel/pele_platform/features
2021-08-04T15:28:55,604   copying build/lib/pele_platform/features/adaptive.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-08-04T15:28:55,611   copying build/lib/pele_platform/features/frag.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-08-04T15:28:55,617   copying build/lib/pele_platform/features/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-08-04T15:28:55,623   creating build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-08-04T15:28:55,625   copying build/lib/pele_platform/Templates/pele_template.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-08-04T15:28:55,630   copying build/lib/pele_platform/Templates/solventParamsHCTOBC.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-08-04T15:28:55,640   copying build/lib/pele_platform/Templates/template_adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-08-04T15:28:55,646   creating build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-08-04T15:28:55,648   copying build/lib/pele_platform/covalent_docking/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-08-04T15:28:55,655   copying build/lib/pele_platform/covalent_docking/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-08-04T15:28:55,662   creating build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,664   copying build/lib/pele_platform/Checker/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,670   copying build/lib/pele_platform/Checker/environment_variables.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,674   copying build/lib/pele_platform/Checker/executable.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,678   copying build/lib/pele_platform/Checker/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,681   copying build/lib/pele_platform/Checker/valid_flags.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,687   copying build/lib/pele_platform/Checker/pdb_checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,692   copying build/lib/pele_platform/Checker/python_version.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-08-04T15:28:55,699   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,702   copying build/lib/pele_platform/Frag/checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,708   copying build/lib/pele_platform/Frag/fragments.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,712   copying build/lib/pele_platform/Frag/libraries.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,717   copying build/lib/pele_platform/Frag/atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,721   copying build/lib/pele_platform/Frag/generative_model.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,726   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-08-04T15:28:55,728   copying build/lib/pele_platform/Frag/parameters/files.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-08-04T15:28:55,734   copying build/lib/pele_platform/Frag/parameters/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-08-04T15:28:55,740   copying build/lib/pele_platform/Frag/parameters/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-08-04T15:28:55,746   copying build/lib/pele_platform/Frag/parameters/optional.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-08-04T15:28:55,751   copying build/lib/pele_platform/Frag/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-08-04T15:28:55,754   copying build/lib/pele_platform/Frag/parameters/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-08-04T15:28:55,759   copying build/lib/pele_platform/Frag/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,764   copying build/lib/pele_platform/Frag/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,768   copying build/lib/pele_platform/Frag/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,773   copying build/lib/pele_platform/Frag/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-08-04T15:28:55,782   creating build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-08-04T15:28:55,784   copying build/lib/pele_platform/out_in/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-08-04T15:28:55,790   copying build/lib/pele_platform/out_in/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-08-04T15:28:55,795   creating build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,797   copying build/lib/pele_platform/Adaptive/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,801   copying build/lib/pele_platform/Adaptive/interaction_restrictions.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,807   copying build/lib/pele_platform/Adaptive/plop_ligand_parametrization.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,811   copying build/lib/pele_platform/Adaptive/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,816   copying build/lib/pele_platform/Adaptive/box.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,822   copying build/lib/pele_platform/Adaptive/plop_solvent.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,827   copying build/lib/pele_platform/Adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,833   copying build/lib/pele_platform/Adaptive/parametrizer.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,841   copying build/lib/pele_platform/Adaptive/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-08-04T15:28:55,848   creating build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-08-04T15:28:55,850   copying build/lib/pele_platform/constants/pele_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-08-04T15:28:55,857   copying build/lib/pele_platform/constants/constants.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-08-04T15:28:55,865   copying build/lib/pele_platform/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-08-04T15:28:55,871   creating build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-08-04T15:28:55,873   copying build/lib/pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-08-04T15:28:55,879   copying build/lib/pele_platform/enzyme_engineering/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-08-04T15:28:55,884   creating build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-08-04T15:28:55,886   copying build/lib/pele_platform/RNA/prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-08-04T15:28:55,891   copying build/lib/pele_platform/RNA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-08-04T15:28:55,895   copying build/lib/pele_platform/main.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-08-04T15:28:55,901   copying build/lib/pele_platform/_version.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-08-04T15:28:55,908   creating build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-08-04T15:28:55,911   copying build/lib/pele_platform/gpcr/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-08-04T15:28:55,916   copying build/lib/pele_platform/gpcr/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-08-04T15:28:55,921   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2021-08-04T15:28:55,924   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,926   copying build/lib/pele_platform/Utilities/Helpers/map_atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,932   copying build/lib/pele_platform/Utilities/Helpers/template_builder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,937   copying build/lib/pele_platform/Utilities/Helpers/yaml_parser.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,945   copying build/lib/pele_platform/Utilities/Helpers/bestStructs.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,952   copying build/lib/pele_platform/Utilities/Helpers/protein_wizard.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,958   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:55,960   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:55,964   copying build/lib/pele_platform/Utilities/Helpers/Metals/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:55,968   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-08-04T15:28:55,973   copying build/lib/pele_platform/Utilities/Helpers/randomize.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,980   copying build/lib/pele_platform/Utilities/Helpers/plop_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,986   copying build/lib/pele_platform/Utilities/Helpers/launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,991   copying build/lib/pele_platform/Utilities/Helpers/conda_deployment.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:55,996   copying build/lib/pele_platform/Utilities/Helpers/system_prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,002   copying build/lib/pele_platform/Utilities/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,006   copying build/lib/pele_platform/Utilities/Helpers/interaction_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,010   copying build/lib/pele_platform/Utilities/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,017   copying build/lib/pele_platform/Utilities/Helpers/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,025   copying build/lib/pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,031   copying build/lib/pele_platform/Utilities/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,037   copying build/lib/pele_platform/Utilities/Helpers/ligand_conformations.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,042   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:56,044   copying build/lib/pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:56,050   copying build/lib/pele_platform/Utilities/Helpers/constraints/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:56,053   copying build/lib/pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-08-04T15:28:56,059   copying build/lib/pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,067   copying build/lib/pele_platform/Utilities/Helpers/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,074   copying build/lib/pele_platform/Utilities/Helpers/missing_residues.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-08-04T15:28:56,080   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-08-04T15:28:56,083   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-08-04T15:28:56,086   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-08-04T15:28:56,090   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-08-04T15:28:56,094   copying build/lib/pele_platform/Utilities/Parameters/parameters.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-08-04T15:28:56,102   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-08-04T15:28:56,106   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-08-04T15:28:56,109   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-08-04T15:28:56,115   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-08-04T15:28:56,119   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-08-04T15:28:56,127   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-08-04T15:28:56,129   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-08-04T15:28:56,134   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-08-04T15:28:56,138   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-08-04T15:28:56,141   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-08-04T15:28:56,147   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-08-04T15:28:56,153   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-08-04T15:28:56,156   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-08-04T15:28:56,161   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-08-04T15:28:56,166   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-08-04T15:28:56,168   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-08-04T15:28:56,172   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-08-04T15:28:56,175   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-08-04T15:28:56,180   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-08-04T15:28:56,183   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-08-04T15:28:56,188   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-08-04T15:28:56,195   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-08-04T15:28:56,198   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-08-04T15:28:56,203   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-08-04T15:28:56,206   copying build/lib/pele_platform/Utilities/Parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-08-04T15:28:56,210   copying build/lib/pele_platform/Utilities/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2021-08-04T15:28:56,214   copying build/lib/pele_platform/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-08-04T15:28:56,219   creating build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-08-04T15:28:56,221   copying build/lib/pele_platform/PPI/cluster.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-08-04T15:28:56,228   copying build/lib/pele_platform/PPI/simulation_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-08-04T15:28:56,233   copying build/lib/pele_platform/PPI/preparation.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-08-04T15:28:56,239   copying build/lib/pele_platform/PPI/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-08-04T15:28:56,244   copying build/lib/pele_platform/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-08-04T15:28:56,249   creating build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-08-04T15:28:56,250   copying build/lib/pele_platform/Errors/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-08-04T15:28:56,254   copying build/lib/pele_platform/Errors/custom_errors.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-08-04T15:28:56,258   running install_egg_info
2021-08-04T15:28:56,284   Copying pele_platform.egg-info to build/bdist.linux-armv7l/wheel/pele_platform-1.6.0rc2-py3.5.egg-info
2021-08-04T15:28:56,314   running install_scripts
2021-08-04T15:28:56,551   creating build/bdist.linux-armv7l/wheel/pele_platform-1.6.0rc2.dist-info/WHEEL
2021-08-04T15:29:13,139   Building wheel for pele-platform (setup.py): finished with status 'done'
2021-08-04T15:29:13,332   Created wheel for pele-platform: filename=pele_platform-1.6.0rc2-py3-none-any.whl size=11411772 sha256=089f457c494767a9d5153745dd6e12ae4c9093451d5ef15fea11ba0e5b603bad
2021-08-04T15:29:13,332   Stored in directory: /tmp/pip-ephem-wheel-cache-ehv9ak69/wheels/04/00/db/9917535cbbd332d69d35e37b28fb8b71cabeef8ebbb80ff0bd
2021-08-04T15:29:13,398 Successfully built pele-platform
2021-08-04T15:29:15,373 Removed build tracker: '/tmp/pip-req-tracker-b1stmuxs'