2021-08-06T07:05:29,668 Created temporary directory: /tmp/pip-ephem-wheel-cache-xv6yx6ns
2021-08-06T07:05:29,671 Created temporary directory: /tmp/pip-req-tracker-uum9rmwe
2021-08-06T07:05:29,672 Initialized build tracking at /tmp/pip-req-tracker-uum9rmwe
2021-08-06T07:05:29,672 Created build tracker: /tmp/pip-req-tracker-uum9rmwe
2021-08-06T07:05:29,673 Entered build tracker: /tmp/pip-req-tracker-uum9rmwe
2021-08-06T07:05:29,673 Created temporary directory: /tmp/pip-wheel-nyhyvo4y
2021-08-06T07:05:29,704 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-08-06T07:05:29,704 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-08-06T07:05:29,704 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-08-06T07:05:29,705 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-08-06T07:05:29,705 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-08-06T07:05:29,708 WARNING: Location '/ilus/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-08-06T07:05:29,708 WARNING: Location 't/ilus/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-08-06T07:05:29,709 WARNING: Location 'm/ilus/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-08-06T07:05:29,709 WARNING: Location 'p/ilus/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-08-06T07:05:29,709 1 location(s) to search for versions of ilus:
2021-08-06T07:05:29,709 * https://pypi.org/simple/ilus/
2021-08-06T07:05:29,710 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2021-08-06T07:05:29,710 Getting page https://pypi.org/simple/ilus/
2021-08-06T07:05:29,712 Found index url https://pypi.org/simple
2021-08-06T07:05:29,802   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz#sha256=767a37912251f975aa58152f257c6e58fcc3e7a3bda060c85cda4f26b10a827f (from https://pypi.org/simple/ilus/), version: 0.1.0
2021-08-06T07:05:29,802   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced (from https://pypi.org/simple/ilus/), version: 1.0.0
2021-08-06T07:05:29,803   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz#sha256=3fb04424d0f6cd75ad0dc7ffbbd8fead26054fc6c8bd04b8e90fc9799f23ce21 (from https://pypi.org/simple/ilus/), version: 1.0.1
2021-08-06T07:05:29,803   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 (from https://pypi.org/simple/ilus/), version: 1.0.2
2021-08-06T07:05:29,803   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz#sha256=abe78bfca9a55ef26dc5b261ce5d24855d0c56b6f5d06d3603ca758a4a745e22 (from https://pypi.org/simple/ilus/), version: 1.0.3
2021-08-06T07:05:29,804   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb (from https://pypi.org/simple/ilus/), version: 1.0.4
2021-08-06T07:05:29,804 Skipping link: not a file: https://pypi.org/simple/ilus/
2021-08-06T07:05:29,818 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2021-08-06T07:05:29,835 Collecting ilus==1.0.4
2021-08-06T07:05:29,837   Created temporary directory: /tmp/pip-unpack-rove4wf3
2021-08-06T07:05:29,877   Downloading ilus-1.0.4.tar.gz (35 kB)
2021-08-06T07:05:29,958   Added ilus==1.0.4 from https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb to build tracker '/tmp/pip-req-tracker-uum9rmwe'
2021-08-06T07:05:29,959     Running setup.py (path:/tmp/pip-wheel-nyhyvo4y/ilus_25bf0fc46fb844f5922f307e7f24a3d6/setup.py) egg_info for package ilus
2021-08-06T07:05:29,960     Created temporary directory: /tmp/pip-pip-egg-info-za397z6c
2021-08-06T07:05:29,960     Running command python setup.py egg_info
2021-08-06T07:05:30,811     running egg_info
2021-08-06T07:05:30,813     creating /tmp/pip-pip-egg-info-za397z6c/ilus.egg-info
2021-08-06T07:05:30,814     writing /tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/PKG-INFO
2021-08-06T07:05:30,817     writing dependency_links to /tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/dependency_links.txt
2021-08-06T07:05:30,819     writing entry points to /tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/entry_points.txt
2021-08-06T07:05:30,820     writing requirements to /tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/requires.txt
2021-08-06T07:05:30,821     writing top-level names to /tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/top_level.txt
2021-08-06T07:05:30,823     writing manifest file '/tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/SOURCES.txt'
2021-08-06T07:05:30,962     reading manifest file '/tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/SOURCES.txt'
2021-08-06T07:05:30,963     adding license file 'LICENSE.txt'
2021-08-06T07:05:30,966     writing manifest file '/tmp/pip-pip-egg-info-za397z6c/ilus.egg-info/SOURCES.txt'
2021-08-06T07:05:31,031   Source in /tmp/pip-wheel-nyhyvo4y/ilus_25bf0fc46fb844f5922f307e7f24a3d6 has version 1.0.4, which satisfies requirement ilus==1.0.4 from https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb
2021-08-06T07:05:31,032   Removed ilus==1.0.4 from https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb from build tracker '/tmp/pip-req-tracker-uum9rmwe'
2021-08-06T07:05:31,040 Created temporary directory: /tmp/pip-unpack-d_mx5y7c
2021-08-06T07:05:31,040 Building wheels for collected packages: ilus
2021-08-06T07:05:31,045   Created temporary directory: /tmp/pip-wheel-c4ecn1zq
2021-08-06T07:05:31,046   Building wheel for ilus (setup.py): started
2021-08-06T07:05:31,046   Destination directory: /tmp/pip-wheel-c4ecn1zq
2021-08-06T07:05:31,046   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nyhyvo4y/ilus_25bf0fc46fb844f5922f307e7f24a3d6/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nyhyvo4y/ilus_25bf0fc46fb844f5922f307e7f24a3d6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-c4ecn1zq
2021-08-06T07:05:31,891   running bdist_wheel
2021-08-06T07:05:31,895   running build
2021-08-06T07:05:31,896   running build_py
2021-08-06T07:05:32,021   creating build
2021-08-06T07:05:32,022   creating build/lib
2021-08-06T07:05:32,022   creating build/lib/ilus
2021-08-06T07:05:32,024   copying ilus/__init__.py -> build/lib/ilus
2021-08-06T07:05:32,025   copying ilus/utils.py -> build/lib/ilus
2021-08-06T07:05:32,027   copying ilus/main.py -> build/lib/ilus
2021-08-06T07:05:32,030   creating build/lib/ilus/pipeline
2021-08-06T07:05:32,031   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2021-08-06T07:05:32,033   copying ilus/pipeline/wgs.py -> build/lib/ilus/pipeline
2021-08-06T07:05:32,036   creating build/lib/ilus/launch
2021-08-06T07:05:32,036   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2021-08-06T07:05:32,038   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2021-08-06T07:05:32,041   creating build/lib/ilus/modules
2021-08-06T07:05:32,042   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2021-08-06T07:05:32,045   creating build/lib/ilus/modules/vcf
2021-08-06T07:05:32,046   copying ilus/modules/vcf/__init__.py -> build/lib/ilus/modules/vcf
2021-08-06T07:05:32,047   copying ilus/modules/vcf/bcftools.py -> build/lib/ilus/modules/vcf
2021-08-06T07:05:32,050   creating build/lib/ilus/modules/summary
2021-08-06T07:05:32,051   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2021-08-06T07:05:32,053   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2021-08-06T07:05:32,055   creating build/lib/ilus/modules/ngsaligner
2021-08-06T07:05:32,056   copying ilus/modules/ngsaligner/__init__.py -> build/lib/ilus/modules/ngsaligner
2021-08-06T07:05:32,058   copying ilus/modules/ngsaligner/bwa.py -> build/lib/ilus/modules/ngsaligner
2021-08-06T07:05:32,060   creating build/lib/ilus/modules/variants
2021-08-06T07:05:32,061   copying ilus/modules/variants/__init__.py -> build/lib/ilus/modules/variants
2021-08-06T07:05:32,063   copying ilus/modules/variants/gatk.py -> build/lib/ilus/modules/variants
2021-08-06T07:05:32,065   running egg_info
2021-08-06T07:05:32,079   writing ilus.egg-info/PKG-INFO
2021-08-06T07:05:32,082   writing dependency_links to ilus.egg-info/dependency_links.txt
2021-08-06T07:05:32,084   writing entry points to ilus.egg-info/entry_points.txt
2021-08-06T07:05:32,085   writing requirements to ilus.egg-info/requires.txt
2021-08-06T07:05:32,086   writing top-level names to ilus.egg-info/top_level.txt
2021-08-06T07:05:32,094   reading manifest file 'ilus.egg-info/SOURCES.txt'
2021-08-06T07:05:32,096   adding license file 'LICENSE.txt'
2021-08-06T07:05:32,099   writing manifest file 'ilus.egg-info/SOURCES.txt'
2021-08-06T07:05:32,110   installing to build/bdist.linux-armv7l/wheel
2021-08-06T07:05:32,110   running install
2021-08-06T07:05:32,111   running install_lib
2021-08-06T07:05:32,115   creating build/bdist.linux-armv7l
2021-08-06T07:05:32,115   creating build/bdist.linux-armv7l/wheel
2021-08-06T07:05:32,117   creating build/bdist.linux-armv7l/wheel/ilus
2021-08-06T07:05:32,118   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-08-06T07:05:32,119   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-08-06T07:05:32,121   copying build/lib/ilus/pipeline/wgs.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-08-06T07:05:32,123   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/ilus
2021-08-06T07:05:32,125   creating build/bdist.linux-armv7l/wheel/ilus/launch
2021-08-06T07:05:32,126   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-08-06T07:05:32,127   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-08-06T07:05:32,130   copying build/lib/ilus/utils.py -> build/bdist.linux-armv7l/wheel/ilus
2021-08-06T07:05:32,132   creating build/bdist.linux-armv7l/wheel/ilus/modules
2021-08-06T07:05:32,133   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules
2021-08-06T07:05:32,135   creating build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-08-06T07:05:32,136   copying build/lib/ilus/modules/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-08-06T07:05:32,138   copying build/lib/ilus/modules/vcf/bcftools.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-08-06T07:05:32,140   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-08-06T07:05:32,141   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-08-06T07:05:32,143   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-08-06T07:05:32,145   creating build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-08-06T07:05:32,146   copying build/lib/ilus/modules/ngsaligner/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-08-06T07:05:32,148   copying build/lib/ilus/modules/ngsaligner/bwa.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-08-06T07:05:32,151   creating build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-08-06T07:05:32,151   copying build/lib/ilus/modules/variants/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-08-06T07:05:32,154   copying build/lib/ilus/modules/variants/gatk.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-08-06T07:05:32,156   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/ilus
2021-08-06T07:05:32,158   running install_egg_info
2021-08-06T07:05:32,167   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/ilus-1.0.4-py3.7.egg-info
2021-08-06T07:05:32,181   running install_scripts
2021-08-06T07:05:32,259   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-08-06T07:05:32,263   creating build/bdist.linux-armv7l/wheel/ilus-1.0.4.dist-info/WHEEL
2021-08-06T07:05:32,266   creating '/tmp/pip-wheel-c4ecn1zq/ilus-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-08-06T07:05:32,269   adding 'ilus/__init__.py'
2021-08-06T07:05:32,270   adding 'ilus/main.py'
2021-08-06T07:05:32,271   adding 'ilus/utils.py'
2021-08-06T07:05:32,273   adding 'ilus/launch/__init__.py'
2021-08-06T07:05:32,275   adding 'ilus/launch/runfunction.py'
2021-08-06T07:05:32,277   adding 'ilus/modules/__init__.py'
2021-08-06T07:05:32,279   adding 'ilus/modules/ngsaligner/__init__.py'
2021-08-06T07:05:32,280   adding 'ilus/modules/ngsaligner/bwa.py'
2021-08-06T07:05:32,282   adding 'ilus/modules/summary/__init__.py'
2021-08-06T07:05:32,283   adding 'ilus/modules/summary/bam.py'
2021-08-06T07:05:32,285   adding 'ilus/modules/variants/__init__.py'
2021-08-06T07:05:32,286   adding 'ilus/modules/variants/gatk.py'
2021-08-06T07:05:32,288   adding 'ilus/modules/vcf/__init__.py'
2021-08-06T07:05:32,289   adding 'ilus/modules/vcf/bcftools.py'
2021-08-06T07:05:32,291   adding 'ilus/pipeline/__init__.py'
2021-08-06T07:05:32,293   adding 'ilus/pipeline/wgs.py'
2021-08-06T07:05:32,295   adding 'ilus-1.0.4.dist-info/LICENSE.txt'
2021-08-06T07:05:32,299   adding 'ilus-1.0.4.dist-info/METADATA'
2021-08-06T07:05:32,300   adding 'ilus-1.0.4.dist-info/WHEEL'
2021-08-06T07:05:32,301   adding 'ilus-1.0.4.dist-info/entry_points.txt'
2021-08-06T07:05:32,302   adding 'ilus-1.0.4.dist-info/top_level.txt'
2021-08-06T07:05:32,303   adding 'ilus-1.0.4.dist-info/RECORD'
2021-08-06T07:05:32,304   removing build/bdist.linux-armv7l/wheel
2021-08-06T07:05:32,382   Building wheel for ilus (setup.py): finished with status 'done'
2021-08-06T07:05:32,384   Created wheel for ilus: filename=ilus-1.0.4-py3-none-any.whl size=26508 sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6
2021-08-06T07:05:32,385   Stored in directory: /tmp/pip-ephem-wheel-cache-xv6yx6ns/wheels/9e/2e/e0/4a765b84cf0e4c445146b24ca31d89de52af906a19c9ca4912
2021-08-06T07:05:32,397 Successfully built ilus
2021-08-06T07:05:32,401 Removed build tracker: '/tmp/pip-req-tracker-uum9rmwe'