2021-08-17T15:16:49,715 Created temporary directory: /tmp/pip-ephem-wheel-cache-pz6krf9i
2021-08-17T15:16:49,718 Created temporary directory: /tmp/pip-req-tracker-f2fyirs7
2021-08-17T15:16:49,719 Initialized build tracking at /tmp/pip-req-tracker-f2fyirs7
2021-08-17T15:16:49,719 Created build tracker: /tmp/pip-req-tracker-f2fyirs7
2021-08-17T15:16:49,719 Entered build tracker: /tmp/pip-req-tracker-f2fyirs7
2021-08-17T15:16:49,720 Created temporary directory: /tmp/pip-wheel-496yvg1z
2021-08-17T15:16:49,754 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-08-17T15:16:49,757 2 location(s) to search for versions of modbampy:
2021-08-17T15:16:49,757 * https://pypi.org/simple/modbampy/
2021-08-17T15:16:49,757 * https://www.piwheels.org/simple/modbampy/
2021-08-17T15:16:49,758 Fetching project page and analyzing links: https://pypi.org/simple/modbampy/
2021-08-17T15:16:49,758 Getting page https://pypi.org/simple/modbampy/
2021-08-17T15:16:49,759 Found index url https://pypi.org/simple
2021-08-17T15:16:49,851   Skipping link: No binaries permitted for modbampy: https://files.pythonhosted.org/packages/cb/92/01d1ec72f52cd9d18713cfd5c7bb064ea70fe031fe238e265112fcd3beb2/modbampy-0.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=46d4c2c5add64b1c7fba490404ff463b777a1d3f57fe0c645aa5c4563f441263 (from https://pypi.org/simple/modbampy/)
2021-08-17T15:16:49,852   Skipping link: No binaries permitted for modbampy: https://files.pythonhosted.org/packages/35/0e/280e5b17b0bc460560075c77da9bd9299b6b7dcb0c061740a94f8b23c90e/modbampy-0.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=68b2f71492f7c491ce50d7652b203b4e1acfb5a39bee3d636caa1e812a2bc912 (from https://pypi.org/simple/modbampy/)
2021-08-17T15:16:49,852   Skipping link: No binaries permitted for modbampy: https://files.pythonhosted.org/packages/01/ef/99be5f576ff7db0f873bc7713921bffd2742fc5ccd6ab381f35a99c41854/modbampy-0.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=52b6a20f924a029863c27bd2b9bb77174f19ae40f77902730d00befdfdd266f0 (from https://pypi.org/simple/modbampy/)
2021-08-17T15:16:49,852   Found link https://files.pythonhosted.org/packages/55/94/2b556fdd57566fec19f24653c37958d07292542dcc35a3c31b9a984ba0d0/modbampy-0.2.1.tar.gz#sha256=3f325673e6337e2d67fb09e7004f718a4d4d9a82a30ea49b40545c19bd78ed11 (from https://pypi.org/simple/modbampy/), version: 0.2.1
2021-08-17T15:16:49,852   Skipping link: No binaries permitted for modbampy: https://files.pythonhosted.org/packages/c2/ce/c3ebc2ce18ca8939e9e0710df6a8fea088c82aa4ca37e9f1eba32ddb5bc2/modbampy-0.2.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=811cfd1d021a6d0f8efdf8a88648896836c21cc9d3b0b11f7101c360967892d3 (from https://pypi.org/simple/modbampy/)
2021-08-17T15:16:49,853   Skipping link: No binaries permitted for modbampy: https://files.pythonhosted.org/packages/eb/10/c44dbeeee9dccadf0568f16f4a6776fca103e9a34ebb1e9fdcdeb7cddd7d/modbampy-0.2.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=2686f294fed887deedff963eaea42dbff5c9bdc218986c311fd46325bbea57f4 (from https://pypi.org/simple/modbampy/)
2021-08-17T15:16:49,853   Skipping link: No binaries permitted for modbampy: https://files.pythonhosted.org/packages/ce/d8/aa825e1ffd01346e323289eac83ed091d3927e86f4b621335c1eecef6090/modbampy-0.2.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=c1bfda8e2105867ea207b701959dce3fca32f528cdc00a32bde9e48dca18be22 (from https://pypi.org/simple/modbampy/)
2021-08-17T15:16:49,853   Found link https://files.pythonhosted.org/packages/4f/e8/ba726f9225c971fa4c82d0bb1ac45735bce2a1894f1d735e03f175f61147/modbampy-0.2.2.tar.gz#sha256=ec77ba3ee07e4e03d8b8d4341ceb15c775f0c89fa059fcacbf9f1ce58260924b (from https://pypi.org/simple/modbampy/), version: 0.2.2
2021-08-17T15:16:49,853 Fetching project page and analyzing links: https://www.piwheels.org/simple/modbampy/
2021-08-17T15:16:49,854 Getting page https://www.piwheels.org/simple/modbampy/
2021-08-17T15:16:49,855 Found index url https://www.piwheels.org/simple
2021-08-17T15:16:49,961 Skipping link: not a file: https://www.piwheels.org/simple/modbampy/
2021-08-17T15:16:49,961 Skipping link: not a file: https://pypi.org/simple/modbampy/
2021-08-17T15:16:49,980 Given no hashes to check 1 links for project 'modbampy': discarding no candidates
2021-08-17T15:16:49,998 Collecting modbampy==0.2.2
2021-08-17T15:16:50,000   Created temporary directory: /tmp/pip-unpack-vls5paom
2021-08-17T15:16:50,042   Downloading modbampy-0.2.2.tar.gz (804 kB)
2021-08-17T15:16:50,753   Added modbampy==0.2.2 from https://files.pythonhosted.org/packages/4f/e8/ba726f9225c971fa4c82d0bb1ac45735bce2a1894f1d735e03f175f61147/modbampy-0.2.2.tar.gz#sha256=ec77ba3ee07e4e03d8b8d4341ceb15c775f0c89fa059fcacbf9f1ce58260924b to build tracker '/tmp/pip-req-tracker-f2fyirs7'
2021-08-17T15:16:50,754     Running setup.py (path:/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py) egg_info for package modbampy
2021-08-17T15:16:50,755     Created temporary directory: /tmp/pip-pip-egg-info-b1ggjtnv
2021-08-17T15:16:50,756     Running command python setup.py egg_info
2021-08-17T15:16:51,834     /usr/lib/python3/dist-packages/cffi/cparser.py:154: UserWarning: String literal found in cdef() or type source. String literals are ignored here, but you should remove them anyway because some character sequences confuse pre-parsing.
2021-08-17T15:16:51,835       warnings.warn("String literal found in cdef() or type source. "
2021-08-17T15:16:51,974     running egg_info
2021-08-17T15:16:51,977     creating /tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info
2021-08-17T15:16:51,978     writing /tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/PKG-INFO
2021-08-17T15:16:51,981     writing dependency_links to /tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/dependency_links.txt
2021-08-17T15:16:51,983     writing entry points to /tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/entry_points.txt
2021-08-17T15:16:51,984     writing requirements to /tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/requires.txt
2021-08-17T15:16:51,985     writing top-level names to /tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/top_level.txt
2021-08-17T15:16:51,987     writing manifest file '/tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/SOURCES.txt'
2021-08-17T15:16:52,142     reading manifest file '/tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/SOURCES.txt'
2021-08-17T15:16:52,143     reading manifest template 'MANIFEST.in'
2021-08-17T15:16:52,147     warning: no files found matching 'LICENSE.md'
2021-08-17T15:16:52,162     no previously-included directories found matching 'htslib/test'
2021-08-17T15:16:52,163     no previously-included directories found matching 'htslib/htscodecs/tests'
2021-08-17T15:16:52,164     no previously-included directories found matching 'build'
2021-08-17T15:16:52,165     no previously-included directories found matching 'docs'
2021-08-17T15:16:52,165     adding license file 'LICENSE'
2021-08-17T15:16:52,173     writing manifest file '/tmp/pip-pip-egg-info-b1ggjtnv/modbampy.egg-info/SOURCES.txt'
2021-08-17T15:16:52,256   Source in /tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486 has version 0.2.2, which satisfies requirement modbampy==0.2.2 from https://files.pythonhosted.org/packages/4f/e8/ba726f9225c971fa4c82d0bb1ac45735bce2a1894f1d735e03f175f61147/modbampy-0.2.2.tar.gz#sha256=ec77ba3ee07e4e03d8b8d4341ceb15c775f0c89fa059fcacbf9f1ce58260924b
2021-08-17T15:16:52,257   Removed modbampy==0.2.2 from https://files.pythonhosted.org/packages/4f/e8/ba726f9225c971fa4c82d0bb1ac45735bce2a1894f1d735e03f175f61147/modbampy-0.2.2.tar.gz#sha256=ec77ba3ee07e4e03d8b8d4341ceb15c775f0c89fa059fcacbf9f1ce58260924b from build tracker '/tmp/pip-req-tracker-f2fyirs7'
2021-08-17T15:16:52,262 Created temporary directory: /tmp/pip-unpack-73r01wru
2021-08-17T15:16:52,262 Building wheels for collected packages: modbampy
2021-08-17T15:16:52,266   Created temporary directory: /tmp/pip-wheel-6n94c34w
2021-08-17T15:16:52,267   Building wheel for modbampy (setup.py): started
2021-08-17T15:16:52,267   Destination directory: /tmp/pip-wheel-6n94c34w
2021-08-17T15:16:52,267   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6n94c34w
2021-08-17T15:16:53,253   /usr/lib/python3/dist-packages/cffi/cparser.py:154: UserWarning: String literal found in cdef() or type source. String literals are ignored here, but you should remove them anyway because some character sequences confuse pre-parsing.
2021-08-17T15:16:53,253     warnings.warn("String literal found in cdef() or type source. "
2021-08-17T15:16:53,400   running bdist_wheel
2021-08-17T15:16:53,405   running build
2021-08-17T15:16:53,405   running build_py
2021-08-17T15:16:53,545   creating build
2021-08-17T15:16:53,545   creating build/lib.linux-armv7l-3.9
2021-08-17T15:16:53,546   creating build/lib.linux-armv7l-3.9/modbampy
2021-08-17T15:16:53,547   copying modbampy/__init__.py -> build/lib.linux-armv7l-3.9/modbampy
2021-08-17T15:16:53,549   running build_ext
2021-08-17T15:16:53,551   generating cffi module 'build/temp.linux-armv7l-3.9/libmodbampy.c'
2021-08-17T15:16:53,551   creating build/temp.linux-armv7l-3.9
2021-08-17T15:16:53,573   Compiling htslib using Makefile
2021-08-17T15:16:53,607   Compiling libhts.a
2021-08-17T15:16:53,608   cd htslib/ \
2021-08-17T15:16:53,608   	&& autoheader \
2021-08-17T15:16:53,608   	&& autoconf \
2021-08-17T15:16:53,608   	&& CFLAGS="-fpic -msse3 -O3 -std=c99 " ./configure  \
2021-08-17T15:16:53,609   	&& make -j 4
2021-08-17T15:16:55,996   checking for gcc... gcc
2021-08-17T15:16:56,182   checking whether the C compiler works... no
2021-08-17T15:16:56,191   configure: error: in `/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/htslib':
2021-08-17T15:16:56,191   configure: error: C compiler cannot create executables
2021-08-17T15:16:56,192   See `config.log' for more details
2021-08-17T15:16:56,272   make: *** [Makefile:22: htslib/libhts.a] Error 77
2021-08-17T15:16:56,274   Traceback (most recent call last):
2021-08-17T15:16:56,275     File "<string>", line 1, in <module>
2021-08-17T15:16:56,275     File "/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py", line 61, in <module>
2021-08-17T15:16:56,276       setup(
2021-08-17T15:16:56,276     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup
2021-08-17T15:16:56,276       return distutils.core.setup(**attrs)
2021-08-17T15:16:56,276     File "/usr/lib/python3.9/distutils/core.py", line 148, in setup
2021-08-17T15:16:56,277       dist.run_commands()
2021-08-17T15:16:56,277     File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands
2021-08-17T15:16:56,278       self.run_command(cmd)
2021-08-17T15:16:56,278     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-08-17T15:16:56,279       cmd_obj.run()
2021-08-17T15:16:56,280     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run
2021-08-17T15:16:56,280       self.run_command('build')
2021-08-17T15:16:56,280     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-08-17T15:16:56,281       self.distribution.run_command(command)
2021-08-17T15:16:56,281     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-08-17T15:16:56,282       cmd_obj.run()
2021-08-17T15:16:56,283     File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run
2021-08-17T15:16:56,283       self.run_command(cmd_name)
2021-08-17T15:16:56,283     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-08-17T15:16:56,283       self.distribution.run_command(command)
2021-08-17T15:16:56,284     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-08-17T15:16:56,285       cmd_obj.run()
2021-08-17T15:16:56,285     File "/usr/lib/python3/dist-packages/cffi/setuptools_ext.py", line 144, in run
2021-08-17T15:16:56,295       base_class.run(self)
2021-08-17T15:16:56,295     File "/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py", line 57, in run
2021-08-17T15:16:56,295       self.execute(compile_hts, [], 'Compiling htslib using Makefile')
2021-08-17T15:16:56,296     File "/usr/lib/python3.9/distutils/cmd.py", line 335, in execute
2021-08-17T15:16:56,296       util.execute(func, args, msg, dry_run=self.dry_run)
2021-08-17T15:16:56,296     File "/usr/lib/python3.9/distutils/util.py", line 304, in execute
2021-08-17T15:16:56,310       func(*args)
2021-08-17T15:16:56,311     File "/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py", line 55, in compile_hts
2021-08-17T15:16:56,311       subprocess.check_call(['make', os.path.join('htslib', 'libhts.a'), 'pymod.a'])
2021-08-17T15:16:56,311     File "/usr/lib/python3.9/subprocess.py", line 373, in check_call
2021-08-17T15:16:56,312       raise CalledProcessError(retcode, cmd)
2021-08-17T15:16:56,312   subprocess.CalledProcessError: Command '['make', 'htslib/libhts.a', 'pymod.a']' returned non-zero exit status 2.
2021-08-17T15:16:56,411   Building wheel for modbampy (setup.py): finished with status 'error'
2021-08-17T15:16:56,411   ERROR: Failed building wheel for modbampy
2021-08-17T15:16:56,412   Running setup.py clean for modbampy
2021-08-17T15:16:56,412   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-496yvg1z/modbampy_71ebd90339264af9ab1a5531ba26d486/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-08-17T15:16:57,392   /usr/lib/python3/dist-packages/cffi/cparser.py:154: UserWarning: String literal found in cdef() or type source. String literals are ignored here, but you should remove them anyway because some character sequences confuse pre-parsing.
2021-08-17T15:16:57,393     warnings.warn("String literal found in cdef() or type source. "
2021-08-17T15:16:57,518   running clean
2021-08-17T15:16:57,520   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-08-17T15:16:57,521   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-08-17T15:16:57,523   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-08-17T15:16:57,523   'build/scripts-3.9' does not exist -- can't clean it
2021-08-17T15:16:57,524   removing 'build'
2021-08-17T15:16:57,598 Failed to build modbampy
2021-08-17T15:16:57,598 ERROR: Failed to build one or more wheels
2021-08-17T15:16:57,599 Exception information:
2021-08-17T15:16:57,599 Traceback (most recent call last):
2021-08-17T15:16:57,599   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-08-17T15:16:57,599     status = self.run(options, args)
2021-08-17T15:16:57,599   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-08-17T15:16:57,599     return func(self, options, args)
2021-08-17T15:16:57,599   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-08-17T15:16:57,599     raise CommandError(
2021-08-17T15:16:57,599 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-08-17T15:16:57,602 Removed build tracker: '/tmp/pip-req-tracker-f2fyirs7'