2021-08-19T20:58:31,182 Created temporary directory: /tmp/pip-ephem-wheel-cache-n2iz2jqo 2021-08-19T20:58:31,185 Created temporary directory: /tmp/pip-req-tracker-o4mdpscp 2021-08-19T20:58:31,186 Initialized build tracking at /tmp/pip-req-tracker-o4mdpscp 2021-08-19T20:58:31,186 Created build tracker: /tmp/pip-req-tracker-o4mdpscp 2021-08-19T20:58:31,186 Entered build tracker: /tmp/pip-req-tracker-o4mdpscp 2021-08-19T20:58:31,187 Created temporary directory: /tmp/pip-wheel-k57pyux7 2021-08-19T20:58:31,216 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-08-19T20:58:31,219 2 location(s) to search for versions of cidc-ngs-pipeline-api: 2021-08-19T20:58:31,219 * https://pypi.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,219 * https://www.piwheels.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,219 Fetching project page and analyzing links: https://pypi.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,220 Getting page https://pypi.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,222 Found index url https://pypi.org/simple 2021-08-19T20:58:31,322 Found link https://files.pythonhosted.org/packages/eb/72/048ba0fefabe1a6113dda9f0dd2ef49e48baa3a2192a383fe0f7f81c301b/cidc_ngs_pipeline_api-0.1.0.tar.gz#sha256=329a3c40250acbbac0c692c3c54241917546105fd227df9994c1fcf2da42bff5 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.0 2021-08-19T20:58:31,322 Found link https://files.pythonhosted.org/packages/9c/a5/33b4625004f55b0de43870d1ed4d15a1a006f7007e8653c70966254a7ea7/cidc_ngs_pipeline_api-0.1.1.tar.gz#sha256=0e0f6e94e05b22145c5a47573bfd5d58449bf7e4f87cf552b7cadfdabf9863ea (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.1 2021-08-19T20:58:31,323 Found link https://files.pythonhosted.org/packages/53/7f/eea842e5d587200410294d40f7917fc2c62dee8956547bfb89bafb00d6e7/cidc_ngs_pipeline_api-0.1.2.tar.gz#sha256=79c4b9690bec471648278566682a9f09ffc71a2c5eb57e57741ea359f87ab4af (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.2 2021-08-19T20:58:31,324 Found link https://files.pythonhosted.org/packages/28/b3/a8ee852b1bec956480c6c975bf61b08be23c22abc84c0111b1312d528dc1/cidc_ngs_pipeline_api-0.1.3.tar.gz#sha256=c2a9197d8f020fed8914b0c6e505d7793ba82cde83a9d0746631a735efb93801 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.3 2021-08-19T20:58:31,327 Found link https://files.pythonhosted.org/packages/bf/42/6b9fc81f0540d796a21cfae33bf3cb1607a962997764dfd9bc97ecadd002/cidc_ngs_pipeline_api-0.1.4.tar.gz#sha256=cfa762fbd4acceadc1a60134ac0828d263ea97f3e55cb2a4ba4de060fb7682d6 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.4 2021-08-19T20:58:31,328 Found link https://files.pythonhosted.org/packages/16/30/28d09cf5bea6cee5bab4e2c4a0105648372be2e13cf85735c6dd0da2ac73/cidc_ngs_pipeline_api-0.1.5.tar.gz#sha256=7f1918b7ab1eff39c43b99f54bd80fe136257ded8883022a86f4f85bda4d905c (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.5 2021-08-19T20:58:31,328 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://files.pythonhosted.org/packages/51/a6/9750032f7be458ef7fe5ce8c961ef0d6d6dd776383c288db4c754bf6fc62/cidc_ngs_pipeline_api-0.1.6-py3-none-any.whl#sha256=8ff130bde44078018f1fedf3a4e07c3c9adc0230f2a6dbb44e4266e372a26610 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,329 Found link https://files.pythonhosted.org/packages/9b/0e/35c8e8177092fc1576ae22518fdc5d10388800441a58c277fe9c9b132bbc/cidc_ngs_pipeline_api-0.1.6.tar.gz#sha256=486eee7c3b727941787aeffaeed36c28cdde5c0eec271834b822e322a59498e8 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.6 2021-08-19T20:58:31,329 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://files.pythonhosted.org/packages/d1/05/c0f38ac0085f3436b057103081084e30dc37ded05668d1cde90a263495a5/cidc_ngs_pipeline_api-0.1.7-py3-none-any.whl#sha256=9673d25a94b558c2d047aee9ed8f6ad333d14bbf52bc00fc17000fe2ba928c5b (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,330 Found link https://files.pythonhosted.org/packages/8a/c0/32dc21dd954e2612258def8fdf7fda279d6794fd7f7d169bce2f5a031891/cidc_ngs_pipeline_api-0.1.7.tar.gz#sha256=f1e6e93f9cb604b3da31cf676e708dd5b29f085af51276f63dc93ad723eb6de3 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.7 2021-08-19T20:58:31,330 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://files.pythonhosted.org/packages/fe/6f/4d15d1f2f8457ccbbdefdf1f979a2a88d41ff8a3f71f17f47dddf462f53e/cidc_ngs_pipeline_api-0.1.8-py3-none-any.whl#sha256=f1a1b7a30efd367913cf51384b977187657b938c421bf6f9051902ec2e61a02e (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,331 Found link https://files.pythonhosted.org/packages/67/cd/f4c3ebdf6dfaae590239ef3b943ffe08d7e101bb7934a484fdd39cc96f01/cidc_ngs_pipeline_api-0.1.8.tar.gz#sha256=dc43f767dd0b8a1ca3767089b11970ac10bb8eae2beda1173147abc32d85ba29 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.8 2021-08-19T20:58:31,331 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://files.pythonhosted.org/packages/74/59/619c739c427a54e86e396e0de9947a2aeef18505641afc8b53ff262a985b/cidc_ngs_pipeline_api-0.1.9-py3-none-any.whl#sha256=1fcbbfe91fe74032d09b845f152724b123a1eb21b16c477162f09888de350f2a (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,332 Found link https://files.pythonhosted.org/packages/53/54/b2534798bf41979d520d9660ea543402d42eb39fc73cb4db89195d10c390/cidc_ngs_pipeline_api-0.1.9.tar.gz#sha256=d3a03b24304dd4582a7227ab472d27085be9d9c06a0c031c83cfa9ece772d87d (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.9 2021-08-19T20:58:31,332 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://files.pythonhosted.org/packages/11/6d/75012ca8ef0a076f50b7d69e71a1994751c16d21263a05a380f0af9a7249/cidc_ngs_pipeline_api-0.1.10-py3-none-any.whl#sha256=5a97e70b5a97be756021c15a0cd5f4e4bd2334415e0e4765fcf2086d45dc1ddb (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,332 Found link https://files.pythonhosted.org/packages/00/45/46ec726ac7ba1f6dc18f99b99d0435da762c9ed42d149c367733482590a9/cidc_ngs_pipeline_api-0.1.10.tar.gz#sha256=278e76f6fbb384d34a1fc7b8bfd3249563b90e35eca2d23947e6d99e13441aa3 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.10 2021-08-19T20:58:31,333 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://files.pythonhosted.org/packages/34/0c/c0f2947e59ead96372bf41722e917f2e6ceff981a26200e0a1535aeb5ed6/cidc_ngs_pipeline_api-0.1.11-py3-none-any.whl#sha256=b78c3c31fdeadfd8dde14cc0c0818801c92560efd4422676c09a7cba564bcbfa (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,333 Found link https://files.pythonhosted.org/packages/73/64/96e700b31b4cce120604df67c0758aab90e3b4e77f3289605d930b92da18/cidc_ngs_pipeline_api-0.1.11.tar.gz#sha256=e3772e42435bd8ef0b2ad892a0fca3fc4e95d018d78bb7dd7778d1dc03301518 (from 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https://files.pythonhosted.org/packages/d8/c8/fd048b2089c88eedd48031d44b8b83e47d07de3a1c4fb5b5ed3f3a206968/cidc_ngs_pipeline_api-0.1.13-py3-none-any.whl#sha256=703ae09096ab89266eb8750607703c15922feb2888cca44e5ebee3c4ff6d1015 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,335 Found link https://files.pythonhosted.org/packages/cb/4c/2533adac10d2414ab42c550dae76f8367333cb7573237be1106900ec06c1/cidc_ngs_pipeline_api-0.1.13.tar.gz#sha256=09606df93b7568539da65a6c99914392d356a991ab77063b1dc28f30a944e7c9 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.13 2021-08-19T20:58:31,335 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://files.pythonhosted.org/packages/9d/01/c269abfe16aadfb81ea8d738b6c92568ac87599ad76e597da97fdc5af71e/cidc_ngs_pipeline_api-0.1.14-py3-none-any.whl#sha256=46ff3f3504c438048a63e3a411b2d7b23a04c18e7a6ca2f1ddfa861c04401f1e (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,336 Found link https://files.pythonhosted.org/packages/e3/51/f3313023607a56ae7c977d33bfb4d43d7d3719277908d42e1e4d15c192f7/cidc_ngs_pipeline_api-0.1.14.tar.gz#sha256=0fc07115fad5051b8904977aa3850e456aa513d29da04dac697406df293161a8 (from https://pypi.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6), version: 0.1.14 2021-08-19T20:58:31,336 Fetching project page and analyzing links: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,337 Getting page https://www.piwheels.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,338 Found index url https://www.piwheels.org/simple 2021-08-19T20:58:31,496 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.10-py3-none-any.whl#sha256=5a97e70b5a97be756021c15a0cd5f4e4bd2334415e0e4765fcf2086d45dc1ddb (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,496 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.11-py3-none-any.whl#sha256=b78c3c31fdeadfd8dde14cc0c0818801c92560efd4422676c09a7cba564bcbfa (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,496 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.12-py3-none-any.whl#sha256=f041d309a7ee3511fb822d5a95f87ee0eafb2ad4bc52077e900ac8a75dda920d (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,497 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: 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permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.5-py3-none-any.whl#sha256=632f717b48179ca9ae33e1f121af699db3ee3ef1668e5223db1bb19c2201b53b (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,498 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.6-py3-none-any.whl#sha256=ffa8560a756d968034cd35ae15299e3ac31bc0b3f0179dc50f23e7fd7d963a4f (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,499 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.7-py3-none-any.whl#sha256=9673d25a94b558c2d047aee9ed8f6ad333d14bbf52bc00fc17000fe2ba928c5b (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,499 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.8-py3-none-any.whl#sha256=f1a1b7a30efd367913cf51384b977187657b938c421bf6f9051902ec2e61a02e (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,499 Skipping link: No binaries permitted for cidc-ngs-pipeline-api: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/cidc_ngs_pipeline_api-0.1.9-py3-none-any.whl#sha256=1fcbbfe91fe74032d09b845f152724b123a1eb21b16c477162f09888de350f2a (from https://www.piwheels.org/simple/cidc-ngs-pipeline-api/) (requires-python:>=3.6) 2021-08-19T20:58:31,500 Skipping link: not a file: https://www.piwheels.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,500 Skipping link: not a file: https://pypi.org/simple/cidc-ngs-pipeline-api/ 2021-08-19T20:58:31,517 Given no hashes to check 1 links for project 'cidc-ngs-pipeline-api': discarding no candidates 2021-08-19T20:58:31,531 Collecting cidc-ngs-pipeline-api==0.1.14 2021-08-19T20:58:31,533 Created temporary directory: /tmp/pip-unpack-l1p3b46i 2021-08-19T20:58:31,791 Downloading cidc_ngs_pipeline_api-0.1.14.tar.gz (2.3 MB) 2021-08-19T20:58:32,183 Added cidc-ngs-pipeline-api==0.1.14 from https://files.pythonhosted.org/packages/e3/51/f3313023607a56ae7c977d33bfb4d43d7d3719277908d42e1e4d15c192f7/cidc_ngs_pipeline_api-0.1.14.tar.gz#sha256=0fc07115fad5051b8904977aa3850e456aa513d29da04dac697406df293161a8 to build tracker '/tmp/pip-req-tracker-o4mdpscp' 2021-08-19T20:58:32,184 Running setup.py (path:/tmp/pip-wheel-k57pyux7/cidc-ngs-pipeline-api_51adae475f644e3387010da44e5841f5/setup.py) egg_info for package cidc-ngs-pipeline-api 2021-08-19T20:58:32,185 Created temporary directory: /tmp/pip-pip-egg-info-n3hv53du 2021-08-19T20:58:32,185 Running command python setup.py egg_info 2021-08-19T20:58:33,054 atacseq 2021-08-19T20:58:33,055 wes_tumor_only 2021-08-19T20:58:33,055 wes 2021-08-19T20:58:33,055 rna 2021-08-19T20:58:33,055 running egg_info 2021-08-19T20:58:33,057 creating /tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info 2021-08-19T20:58:33,058 writing /tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info/PKG-INFO 2021-08-19T20:58:33,060 writing dependency_links to /tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info/dependency_links.txt 2021-08-19T20:58:33,062 writing requirements to /tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info/requires.txt 2021-08-19T20:58:33,063 writing top-level names to /tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info/top_level.txt 2021-08-19T20:58:33,065 writing manifest file '/tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info/SOURCES.txt' 2021-08-19T20:58:33,198 reading manifest file '/tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info/SOURCES.txt' 2021-08-19T20:58:33,200 reading manifest template 'MANIFEST.in' 2021-08-19T20:58:33,207 writing manifest file '/tmp/pip-pip-egg-info-n3hv53du/cidc_ngs_pipeline_api.egg-info/SOURCES.txt' 2021-08-19T20:58:33,272 Source in /tmp/pip-wheel-k57pyux7/cidc-ngs-pipeline-api_51adae475f644e3387010da44e5841f5 has version 0.1.14, which satisfies requirement cidc-ngs-pipeline-api==0.1.14 from https://files.pythonhosted.org/packages/e3/51/f3313023607a56ae7c977d33bfb4d43d7d3719277908d42e1e4d15c192f7/cidc_ngs_pipeline_api-0.1.14.tar.gz#sha256=0fc07115fad5051b8904977aa3850e456aa513d29da04dac697406df293161a8 2021-08-19T20:58:33,273 Removed cidc-ngs-pipeline-api==0.1.14 from https://files.pythonhosted.org/packages/e3/51/f3313023607a56ae7c977d33bfb4d43d7d3719277908d42e1e4d15c192f7/cidc_ngs_pipeline_api-0.1.14.tar.gz#sha256=0fc07115fad5051b8904977aa3850e456aa513d29da04dac697406df293161a8 from build tracker '/tmp/pip-req-tracker-o4mdpscp' 2021-08-19T20:58:33,281 Created temporary directory: /tmp/pip-unpack-dqcedun3 2021-08-19T20:58:33,281 Building wheels for collected packages: cidc-ngs-pipeline-api 2021-08-19T20:58:33,286 Created temporary directory: /tmp/pip-wheel-v7xxfpb4 2021-08-19T20:58:33,286 Building wheel for cidc-ngs-pipeline-api (setup.py): started 2021-08-19T20:58:33,287 Destination directory: /tmp/pip-wheel-v7xxfpb4 2021-08-19T20:58:33,287 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-k57pyux7/cidc-ngs-pipeline-api_51adae475f644e3387010da44e5841f5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-k57pyux7/cidc-ngs-pipeline-api_51adae475f644e3387010da44e5841f5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v7xxfpb4 2021-08-19T20:58:33,981 atacseq 2021-08-19T20:58:33,982 wes_tumor_only 2021-08-19T20:58:33,983 wes 2021-08-19T20:58:33,985 rna 2021-08-19T20:58:34,154 running bdist_wheel 2021-08-19T20:58:34,158 running build 2021-08-19T20:58:34,158 running build_py 2021-08-19T20:58:34,285 creating build 2021-08-19T20:58:34,286 creating build/lib 2021-08-19T20:58:34,287 creating build/lib/cidc_ngs_pipeline_api 2021-08-19T20:58:34,288 copying cidc_ngs_pipeline_api/__init__.py -> build/lib/cidc_ngs_pipeline_api 2021-08-19T20:58:34,290 running egg_info 2021-08-19T20:58:34,304 writing cidc_ngs_pipeline_api.egg-info/PKG-INFO 2021-08-19T20:58:34,306 writing dependency_links to cidc_ngs_pipeline_api.egg-info/dependency_links.txt 2021-08-19T20:58:34,308 writing requirements to cidc_ngs_pipeline_api.egg-info/requires.txt 2021-08-19T20:58:34,309 writing top-level names to cidc_ngs_pipeline_api.egg-info/top_level.txt 2021-08-19T20:58:34,314 reading manifest file 'cidc_ngs_pipeline_api.egg-info/SOURCES.txt' 2021-08-19T20:58:34,316 reading manifest template 'MANIFEST.in' 2021-08-19T20:58:34,324 writing manifest file 'cidc_ngs_pipeline_api.egg-info/SOURCES.txt' 2021-08-19T20:58:34,328 copying cidc_ngs_pipeline_api/output_API.schema.json -> build/lib/cidc_ngs_pipeline_api 2021-08-19T20:58:34,330 creating build/lib/cidc_ngs_pipeline_api/__pycache__ 2021-08-19T20:58:34,331 copying cidc_ngs_pipeline_api/__pycache__/__init__.cpython-37.pyc -> build/lib/cidc_ngs_pipeline_api/__pycache__ 2021-08-19T20:58:34,334 creating build/lib/cidc_ngs_pipeline_api/atacseq 2021-08-19T20:58:34,334 copying cidc_ngs_pipeline_api/atacseq/atacseq.md -> build/lib/cidc_ngs_pipeline_api/atacseq 2021-08-19T20:58:34,337 copying cidc_ngs_pipeline_api/atacseq/atacseq_output_API.json -> build/lib/cidc_ngs_pipeline_api/atacseq 2021-08-19T20:58:34,339 creating build/lib/cidc_ngs_pipeline_api/atacseq/imgs 2021-08-19T20:58:34,340 copying cidc_ngs_pipeline_api/atacseq/imgs/atacseq.png -> build/lib/cidc_ngs_pipeline_api/atacseq/imgs 2021-08-19T20:58:34,360 creating build/lib/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,361 copying cidc_ngs_pipeline_api/rna/rna.md -> build/lib/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,364 copying cidc_ngs_pipeline_api/rna/rna_config.schema.json -> build/lib/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,367 copying cidc_ngs_pipeline_api/rna/rna_output_API.json -> build/lib/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,370 creating build/lib/cidc_ngs_pipeline_api/rna/imgs 2021-08-19T20:58:34,370 copying cidc_ngs_pipeline_api/rna/imgs/RIMA.png -> build/lib/cidc_ngs_pipeline_api/rna/imgs 2021-08-19T20:58:34,402 creating build/lib/cidc_ngs_pipeline_api/tcr 2021-08-19T20:58:34,403 copying cidc_ngs_pipeline_api/tcr/tcr.md -> build/lib/cidc_ngs_pipeline_api/tcr 2021-08-19T20:58:34,405 creating build/lib/cidc_ngs_pipeline_api/tcr/imgs 2021-08-19T20:58:34,406 copying cidc_ngs_pipeline_api/tcr/imgs/TCRseq.png -> build/lib/cidc_ngs_pipeline_api/tcr/imgs 2021-08-19T20:58:34,413 creating build/lib/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,414 copying cidc_ngs_pipeline_api/wes/wes.md -> build/lib/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,417 copying cidc_ngs_pipeline_api/wes/wes_config.schema.json -> build/lib/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,419 copying cidc_ngs_pipeline_api/wes/wes_output_API.json -> build/lib/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,423 copying cidc_ngs_pipeline_api/wes/wes_output_API.py -> build/lib/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,427 copying cidc_ngs_pipeline_api/wes/wes_tumor_only_output_API.json -> build/lib/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,430 creating build/lib/cidc_ngs_pipeline_api/wes/imgs 2021-08-19T20:58:34,431 copying cidc_ngs_pipeline_api/wes/imgs/wes.png -> build/lib/cidc_ngs_pipeline_api/wes/imgs 2021-08-19T20:58:34,452 installing to build/bdist.linux-armv7l/wheel 2021-08-19T20:58:34,452 running install 2021-08-19T20:58:34,454 running install_lib 2021-08-19T20:58:34,457 creating build/bdist.linux-armv7l 2021-08-19T20:58:34,458 creating build/bdist.linux-armv7l/wheel 2021-08-19T20:58:34,459 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api 2021-08-19T20:58:34,461 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/atacseq 2021-08-19T20:58:34,463 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/atacseq/imgs 2021-08-19T20:58:34,464 copying build/lib/cidc_ngs_pipeline_api/atacseq/imgs/atacseq.png -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/atacseq/imgs 2021-08-19T20:58:34,483 copying build/lib/cidc_ngs_pipeline_api/atacseq/atacseq_output_API.json -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/atacseq 2021-08-19T20:58:34,485 copying build/lib/cidc_ngs_pipeline_api/atacseq/atacseq.md -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/atacseq 2021-08-19T20:58:34,487 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/__pycache__ 2021-08-19T20:58:34,488 copying build/lib/cidc_ngs_pipeline_api/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/__pycache__ 2021-08-19T20:58:34,491 copying build/lib/cidc_ngs_pipeline_api/__init__.py -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api 2021-08-19T20:58:34,493 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,494 copying build/lib/cidc_ngs_pipeline_api/wes/wes.md -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,497 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes/imgs 2021-08-19T20:58:34,498 copying build/lib/cidc_ngs_pipeline_api/wes/imgs/wes.png -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes/imgs 2021-08-19T20:58:34,519 copying build/lib/cidc_ngs_pipeline_api/wes/wes_config.schema.json -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,521 copying build/lib/cidc_ngs_pipeline_api/wes/wes_tumor_only_output_API.json -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,524 copying build/lib/cidc_ngs_pipeline_api/wes/wes_output_API.py -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,526 copying build/lib/cidc_ngs_pipeline_api/wes/wes_output_API.json -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/wes 2021-08-19T20:58:34,530 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/tcr 2021-08-19T20:58:34,531 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/tcr/imgs 2021-08-19T20:58:34,532 copying build/lib/cidc_ngs_pipeline_api/tcr/imgs/TCRseq.png -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/tcr/imgs 2021-08-19T20:58:34,538 copying build/lib/cidc_ngs_pipeline_api/tcr/tcr.md -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/tcr 2021-08-19T20:58:34,540 copying build/lib/cidc_ngs_pipeline_api/output_API.schema.json -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api 2021-08-19T20:58:34,543 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,544 copying build/lib/cidc_ngs_pipeline_api/rna/rna.md -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,546 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/rna/imgs 2021-08-19T20:58:34,547 copying build/lib/cidc_ngs_pipeline_api/rna/imgs/RIMA.png -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/rna/imgs 2021-08-19T20:58:34,577 copying build/lib/cidc_ngs_pipeline_api/rna/rna_output_API.json -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,579 copying build/lib/cidc_ngs_pipeline_api/rna/rna_config.schema.json -> build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api/rna 2021-08-19T20:58:34,581 running install_egg_info 2021-08-19T20:58:34,589 Copying cidc_ngs_pipeline_api.egg-info to build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api-0.1.14-py3.7.egg-info 2021-08-19T20:58:34,601 running install_scripts 2021-08-19T20:58:34,674 creating build/bdist.linux-armv7l/wheel/cidc_ngs_pipeline_api-0.1.14.dist-info/WHEEL 2021-08-19T20:58:34,677 creating '/tmp/pip-wheel-v7xxfpb4/cidc_ngs_pipeline_api-0.1.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-08-19T20:58:34,679 adding 'cidc_ngs_pipeline_api/__init__.py' 2021-08-19T20:58:34,680 adding 'cidc_ngs_pipeline_api/output_API.schema.json' 2021-08-19T20:58:34,682 adding 'cidc_ngs_pipeline_api/__pycache__/__init__.cpython-37.pyc' 2021-08-19T20:58:34,684 adding 'cidc_ngs_pipeline_api/atacseq/atacseq.md' 2021-08-19T20:58:34,686 adding 'cidc_ngs_pipeline_api/atacseq/atacseq_output_API.json' 2021-08-19T20:58:34,776 adding 'cidc_ngs_pipeline_api/atacseq/imgs/atacseq.png' 2021-08-19T20:58:34,783 adding 'cidc_ngs_pipeline_api/rna/rna.md' 2021-08-19T20:58:34,784 adding 'cidc_ngs_pipeline_api/rna/rna_config.schema.json' 2021-08-19T20:58:34,785 adding 'cidc_ngs_pipeline_api/rna/rna_output_API.json' 2021-08-19T20:58:34,936 adding 'cidc_ngs_pipeline_api/rna/imgs/RIMA.png' 2021-08-19T20:58:34,945 adding 'cidc_ngs_pipeline_api/tcr/tcr.md' 2021-08-19T20:58:34,965 adding 'cidc_ngs_pipeline_api/tcr/imgs/TCRseq.png' 2021-08-19T20:58:34,968 adding 'cidc_ngs_pipeline_api/wes/wes.md' 2021-08-19T20:58:34,969 adding 'cidc_ngs_pipeline_api/wes/wes_config.schema.json' 2021-08-19T20:58:34,971 adding 'cidc_ngs_pipeline_api/wes/wes_output_API.json' 2021-08-19T20:58:34,973 adding 'cidc_ngs_pipeline_api/wes/wes_output_API.py' 2021-08-19T20:58:34,975 adding 'cidc_ngs_pipeline_api/wes/wes_tumor_only_output_API.json' 2021-08-19T20:58:35,026 adding 'cidc_ngs_pipeline_api/wes/imgs/wes.png' 2021-08-19T20:58:35,031 adding 'cidc_ngs_pipeline_api-0.1.14.dist-info/METADATA' 2021-08-19T20:58:35,032 adding 'cidc_ngs_pipeline_api-0.1.14.dist-info/WHEEL' 2021-08-19T20:58:35,033 adding 'cidc_ngs_pipeline_api-0.1.14.dist-info/top_level.txt' 2021-08-19T20:58:35,033 adding 'cidc_ngs_pipeline_api-0.1.14.dist-info/RECORD' 2021-08-19T20:58:35,061 removing build/bdist.linux-armv7l/wheel 2021-08-19T20:58:35,145 Building wheel for cidc-ngs-pipeline-api (setup.py): finished with status 'done' 2021-08-19T20:58:35,172 Created wheel for cidc-ngs-pipeline-api: filename=cidc_ngs_pipeline_api-0.1.14-py3-none-any.whl size=2338435 sha256=0fd6f2323195056245234a26945b3b3585304c5f3b17e586ee93cf1b648767e4 2021-08-19T20:58:35,172 Stored in directory: /tmp/pip-ephem-wheel-cache-n2iz2jqo/wheels/d7/df/da/a77753e58013a2e48c8193b245a14ea5caf63a37fd97c86f31 2021-08-19T20:58:35,183 Successfully built cidc-ngs-pipeline-api 2021-08-19T20:58:35,270 Removed build tracker: '/tmp/pip-req-tracker-o4mdpscp'