2021-08-23T22:26:41,594 Created temporary directory: /tmp/pip-ephem-wheel-cache-au4s59b_
2021-08-23T22:26:41,597 Created temporary directory: /tmp/pip-req-tracker-96g9jdyp
2021-08-23T22:26:41,597 Initialized build tracking at /tmp/pip-req-tracker-96g9jdyp
2021-08-23T22:26:41,597 Created build tracker: /tmp/pip-req-tracker-96g9jdyp
2021-08-23T22:26:41,597 Entered build tracker: /tmp/pip-req-tracker-96g9jdyp
2021-08-23T22:26:41,598 Created temporary directory: /tmp/pip-wheel-k6jvz2rr
2021-08-23T22:26:41,630 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-08-23T22:26:41,633 2 location(s) to search for versions of nmdc-runtime:
2021-08-23T22:26:41,633 * https://pypi.org/simple/nmdc-runtime/
2021-08-23T22:26:41,633 * https://www.piwheels.org/simple/nmdc-runtime/
2021-08-23T22:26:41,633 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/
2021-08-23T22:26:41,634 Getting page https://pypi.org/simple/nmdc-runtime/
2021-08-23T22:26:41,635 Found index url https://pypi.org/simple
2021-08-23T22:26:41,730   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=de0204efa483209fe109a5fbdccdf7508c92214aeb6494c5d300f0f62ccb3e7d (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2021-08-23T22:26:41,731   Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz#sha256=2d7d92622b44452986ee3e55eab45288395457d0628e8ad5c325d7f9193a5f76 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0
2021-08-23T22:26:41,731   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=c41cc0aa7fba811600b33cf37f1412e3174847d3c44b1b69341e44d2f0fd9544 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2021-08-23T22:26:41,732   Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz#sha256=c27d69926316237e12c4015144bf8c95af69e5fe94bc2646fda515785c948f85 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1
2021-08-23T22:26:41,732 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/
2021-08-23T22:26:41,732 Getting page https://www.piwheels.org/simple/nmdc-runtime/
2021-08-23T22:26:41,733 Found index url https://www.piwheels.org/simple
2021-08-23T22:26:41,838 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/
2021-08-23T22:26:41,839 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/
2021-08-23T22:26:41,858 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates
2021-08-23T22:26:41,878 Collecting nmdc-runtime==0.1.0
2021-08-23T22:26:41,880   Created temporary directory: /tmp/pip-unpack-zd45oqmx
2021-08-23T22:26:44,961   Downloading nmdc_runtime-0.1.0.tar.gz (94.2 MB)
2021-08-23T22:26:59,594   Added nmdc-runtime==0.1.0 from https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz#sha256=2d7d92622b44452986ee3e55eab45288395457d0628e8ad5c325d7f9193a5f76 to build tracker '/tmp/pip-req-tracker-96g9jdyp'
2021-08-23T22:26:59,596     Running setup.py (path:/tmp/pip-wheel-k6jvz2rr/nmdc-runtime_f2957bf118344ab686e1cb3419334056/setup.py) egg_info for package nmdc-runtime
2021-08-23T22:26:59,596     Created temporary directory: /tmp/pip-pip-egg-info-acu7uuvl
2021-08-23T22:26:59,597     Running command python setup.py egg_info
2021-08-23T22:27:02,935     running egg_info
2021-08-23T22:27:02,938     creating /tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info
2021-08-23T22:27:02,939     writing /tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/PKG-INFO
2021-08-23T22:27:02,941     writing dependency_links to /tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/dependency_links.txt
2021-08-23T22:27:02,942     writing entry points to /tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/entry_points.txt
2021-08-23T22:27:02,944     writing requirements to /tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/requires.txt
2021-08-23T22:27:02,945     writing top-level names to /tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/top_level.txt
2021-08-23T22:27:02,946     writing manifest file '/tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/SOURCES.txt'
2021-08-23T22:27:03,141     reading manifest file '/tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/SOURCES.txt'
2021-08-23T22:27:03,142     adding license file 'LICENSE'
2021-08-23T22:27:03,149     writing manifest file '/tmp/pip-pip-egg-info-acu7uuvl/nmdc_runtime.egg-info/SOURCES.txt'
2021-08-23T22:27:03,225   Source in /tmp/pip-wheel-k6jvz2rr/nmdc-runtime_f2957bf118344ab686e1cb3419334056 has version 0.1.0, which satisfies requirement nmdc-runtime==0.1.0 from https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz#sha256=2d7d92622b44452986ee3e55eab45288395457d0628e8ad5c325d7f9193a5f76
2021-08-23T22:27:03,226   Removed nmdc-runtime==0.1.0 from https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz#sha256=2d7d92622b44452986ee3e55eab45288395457d0628e8ad5c325d7f9193a5f76 from build tracker '/tmp/pip-req-tracker-96g9jdyp'
2021-08-23T22:27:03,232 Created temporary directory: /tmp/pip-unpack-afgdidik
2021-08-23T22:27:03,233 Building wheels for collected packages: nmdc-runtime
2021-08-23T22:27:03,238   Created temporary directory: /tmp/pip-wheel-hfkdcrj7
2021-08-23T22:27:03,239   Building wheel for nmdc-runtime (setup.py): started
2021-08-23T22:27:03,239   Destination directory: /tmp/pip-wheel-hfkdcrj7
2021-08-23T22:27:03,239   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-k6jvz2rr/nmdc-runtime_f2957bf118344ab686e1cb3419334056/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-k6jvz2rr/nmdc-runtime_f2957bf118344ab686e1cb3419334056/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hfkdcrj7
2021-08-23T22:27:04,421   running bdist_wheel
2021-08-23T22:27:04,601   running build
2021-08-23T22:27:04,602   running build_py
2021-08-23T22:27:04,741   creating build
2021-08-23T22:27:04,741   creating build/lib
2021-08-23T22:27:04,742   creating build/lib/nmdc_runtime
2021-08-23T22:27:04,743   copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime
2021-08-23T22:27:04,745   copying nmdc_runtime/terminusdbgen.py -> build/lib/nmdc_runtime
2021-08-23T22:27:04,748   copying nmdc_runtime/util.py -> build/lib/nmdc_runtime
2021-08-23T22:27:04,750   creating build/lib/metadata-translation
2021-08-23T22:27:04,751   copying metadata-translation/__init__.py -> build/lib/metadata-translation
2021-08-23T22:27:04,753   creating build/lib/nmdc_runtime/lib
2021-08-23T22:27:04,754   copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib
2021-08-23T22:27:04,757   copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib
2021-08-23T22:27:04,760   copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib
2021-08-23T22:27:04,762   copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib
2021-08-23T22:27:04,764   copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib
2021-08-23T22:27:04,767   copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib
2021-08-23T22:27:04,770   creating build/lib/nmdc_runtime/api
2021-08-23T22:27:04,771   copying nmdc_runtime/api/main.py -> build/lib/nmdc_runtime/api
2021-08-23T22:27:04,774   copying nmdc_runtime/api/__init__.py -> build/lib/nmdc_runtime/api
2021-08-23T22:27:04,777   creating build/lib/nmdc_runtime/dagster
2021-08-23T22:27:04,778   copying nmdc_runtime/dagster/repository.py -> build/lib/nmdc_runtime/dagster
2021-08-23T22:27:04,781   copying nmdc_runtime/dagster/resources.py -> build/lib/nmdc_runtime/dagster
2021-08-23T22:27:04,784   copying nmdc_runtime/dagster/graphs.py -> build/lib/nmdc_runtime/dagster
2021-08-23T22:27:04,785   copying nmdc_runtime/dagster/__init__.py -> build/lib/nmdc_runtime/dagster
2021-08-23T22:27:04,787   copying nmdc_runtime/dagster/util.py -> build/lib/nmdc_runtime/dagster
2021-08-23T22:27:04,789   copying nmdc_runtime/dagster/ops.py -> build/lib/nmdc_runtime/dagster
2021-08-23T22:27:04,793   creating build/lib/nmdc_runtime/api/boot
2021-08-23T22:27:04,794   copying nmdc_runtime/api/boot/workflows.py -> build/lib/nmdc_runtime/api/boot
2021-08-23T22:27:04,796   copying nmdc_runtime/api/boot/capabilities.py -> build/lib/nmdc_runtime/api/boot
2021-08-23T22:27:04,798   copying nmdc_runtime/api/boot/object_types.py -> build/lib/nmdc_runtime/api/boot
2021-08-23T22:27:04,800   copying nmdc_runtime/api/boot/__init__.py -> build/lib/nmdc_runtime/api/boot
2021-08-23T22:27:04,802   copying nmdc_runtime/api/boot/triggers.py -> build/lib/nmdc_runtime/api/boot
2021-08-23T22:27:04,805   creating build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,806   copying nmdc_runtime/api/endpoints/operations.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,808   copying nmdc_runtime/api/endpoints/workflows.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,810   copying nmdc_runtime/api/endpoints/users.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,813   copying nmdc_runtime/api/endpoints/sites.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,815   copying nmdc_runtime/api/endpoints/objects.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,818   copying nmdc_runtime/api/endpoints/capabilities.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,820   copying nmdc_runtime/api/endpoints/ids.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,822   copying nmdc_runtime/api/endpoints/object_types.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,824   copying nmdc_runtime/api/endpoints/__init__.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,826   copying nmdc_runtime/api/endpoints/jobs.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,828   copying nmdc_runtime/api/endpoints/util.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,830   copying nmdc_runtime/api/endpoints/queries.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,832   copying nmdc_runtime/api/endpoints/triggers.py -> build/lib/nmdc_runtime/api/endpoints
2021-08-23T22:27:04,835   creating build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,836   copying nmdc_runtime/api/models/query.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,838   copying nmdc_runtime/api/models/id.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,841   copying nmdc_runtime/api/models/trigger.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,843   copying nmdc_runtime/api/models/object_type.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,844   copying nmdc_runtime/api/models/job.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,846   copying nmdc_runtime/api/models/capability.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,848   copying nmdc_runtime/api/models/site.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,850   copying nmdc_runtime/api/models/object.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,853   copying nmdc_runtime/api/models/__init__.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,854   copying nmdc_runtime/api/models/operation.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,856   copying nmdc_runtime/api/models/workflow.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,858   copying nmdc_runtime/api/models/util.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,860   copying nmdc_runtime/api/models/user.py -> build/lib/nmdc_runtime/api/models
2021-08-23T22:27:04,863   creating build/lib/nmdc_runtime/api/db
2021-08-23T22:27:04,864   copying nmdc_runtime/api/db/mongo.py -> build/lib/nmdc_runtime/api/db
2021-08-23T22:27:04,866   copying nmdc_runtime/api/db/s3.py -> build/lib/nmdc_runtime/api/db
2021-08-23T22:27:04,868   copying nmdc_runtime/api/db/__init__.py -> build/lib/nmdc_runtime/api/db
2021-08-23T22:27:04,870   copying nmdc_runtime/api/db/terminus.py -> build/lib/nmdc_runtime/api/db
2021-08-23T22:27:04,873   creating build/lib/nmdc_runtime/api/core
2021-08-23T22:27:04,873   copying nmdc_runtime/api/core/__init__.py -> build/lib/nmdc_runtime/api/core
2021-08-23T22:27:04,875   copying nmdc_runtime/api/core/auth.py -> build/lib/nmdc_runtime/api/core
2021-08-23T22:27:04,878   copying nmdc_runtime/api/core/util.py -> build/lib/nmdc_runtime/api/core
2021-08-23T22:27:04,880   copying nmdc_runtime/api/core/idgen.py -> build/lib/nmdc_runtime/api/core
2021-08-23T22:27:04,883   creating build/lib/nmdc_runtime/dagster/translation
2021-08-23T22:27:04,884   copying nmdc_runtime/dagster/translation/gold.py -> build/lib/nmdc_runtime/dagster/translation
2021-08-23T22:27:04,886   copying nmdc_runtime/dagster/translation/emsl.py -> build/lib/nmdc_runtime/dagster/translation
2021-08-23T22:27:04,888   copying nmdc_runtime/dagster/translation/__init__.py -> build/lib/nmdc_runtime/dagster/translation
2021-08-23T22:27:04,890   copying nmdc_runtime/dagster/translation/util.py -> build/lib/nmdc_runtime/dagster/translation
2021-08-23T22:27:04,892   copying nmdc_runtime/dagster/translation/jgi.py -> build/lib/nmdc_runtime/dagster/translation
2021-08-23T22:27:04,895   creating build/lib/metadata-translation/src
2021-08-23T22:27:04,896   copying metadata-translation/src/__init__.py -> build/lib/metadata-translation/src
2021-08-23T22:27:04,898   creating build/lib/metadata-translation/src/data
2021-08-23T22:27:04,899   copying metadata-translation/src/data/__init__.py -> build/lib/metadata-translation/src/data
2021-08-23T22:27:04,902   creating build/lib/metadata-translation/src/bin
2021-08-23T22:27:04,902   copying metadata-translation/src/bin/validate_json.py -> build/lib/metadata-translation/src/bin
2021-08-23T22:27:04,905   copying metadata-translation/src/bin/align_nmdc_datatypes.py -> build/lib/metadata-translation/src/bin
2021-08-23T22:27:04,907   copying metadata-translation/src/bin/__init__.py -> build/lib/metadata-translation/src/bin
2021-08-23T22:27:04,908   copying metadata-translation/src/bin/mandatory_mixs_terms.py -> build/lib/metadata-translation/src/bin
2021-08-23T22:27:04,910   copying metadata-translation/src/bin/fix_omics_processing_json.py -> build/lib/metadata-translation/src/bin
2021-08-23T22:27:04,913   copying metadata-translation/src/bin/execute_etl_pipeline.py -> build/lib/metadata-translation/src/bin
2021-08-23T22:27:04,916   creating build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,917   copying metadata-translation/src/bin/lib/data_operations.py -> build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,921   copying metadata-translation/src/bin/lib/extract_nmdc_data.py -> build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,927   copying metadata-translation/src/bin/lib/transform_nmdc_data.py -> build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,931   copying metadata-translation/src/bin/lib/load_nmdc_data.py -> build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,933   copying metadata-translation/src/bin/lib/__init__.py -> build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,935   copying metadata-translation/src/bin/lib/nmdc_etl_class.py -> build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,938   copying metadata-translation/src/bin/lib/nmdc_dataframes.py -> build/lib/metadata-translation/src/bin/lib
2021-08-23T22:27:04,942   creating build/lib/tests
2021-08-23T22:27:04,943   creating build/lib/tests/test_pipelines
2021-08-23T22:27:04,944   copying tests/test_pipelines/test_hello.py -> build/lib/tests/test_pipelines
2021-08-23T22:27:04,946   copying tests/test_pipelines/__init__.py -> build/lib/tests/test_pipelines
2021-08-23T22:27:04,949   creating build/lib/tests/test_solids
2021-08-23T22:27:04,950   copying tests/test_solids/test_hello.py -> build/lib/tests/test_solids
2021-08-23T22:27:04,953   copying tests/test_solids/__init__.py -> build/lib/tests/test_solids
2021-08-23T22:27:04,973   installing to build/bdist.linux-armv7l/wheel
2021-08-23T22:27:04,973   running install
2021-08-23T22:27:04,974   running install_lib
2021-08-23T22:27:04,978   creating build/bdist.linux-armv7l
2021-08-23T22:27:04,979   creating build/bdist.linux-armv7l/wheel
2021-08-23T22:27:04,980   creating build/bdist.linux-armv7l/wheel/nmdc_runtime
2021-08-23T22:27:04,982   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2021-08-23T22:27:04,983   copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2021-08-23T22:27:04,985   copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2021-08-23T22:27:04,988   copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2021-08-23T22:27:04,990   copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2021-08-23T22:27:04,992   copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2021-08-23T22:27:04,994   copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2021-08-23T22:27:04,998   copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime
2021-08-23T22:27:05,000   copying build/lib/nmdc_runtime/terminusdbgen.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime
2021-08-23T22:27:05,003   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api
2021-08-23T22:27:05,004   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2021-08-23T22:27:05,005   copying build/lib/nmdc_runtime/api/boot/workflows.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2021-08-23T22:27:05,007   copying build/lib/nmdc_runtime/api/boot/capabilities.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2021-08-23T22:27:05,009   copying build/lib/nmdc_runtime/api/boot/object_types.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2021-08-23T22:27:05,011   copying build/lib/nmdc_runtime/api/boot/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2021-08-23T22:27:05,013   copying build/lib/nmdc_runtime/api/boot/triggers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2021-08-23T22:27:05,015   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,016   copying build/lib/nmdc_runtime/api/endpoints/operations.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,019   copying build/lib/nmdc_runtime/api/endpoints/workflows.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,021   copying build/lib/nmdc_runtime/api/endpoints/users.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,023   copying build/lib/nmdc_runtime/api/endpoints/sites.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,025   copying build/lib/nmdc_runtime/api/endpoints/objects.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,028   copying build/lib/nmdc_runtime/api/endpoints/capabilities.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,030   copying build/lib/nmdc_runtime/api/endpoints/ids.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,032   copying build/lib/nmdc_runtime/api/endpoints/object_types.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,034   copying build/lib/nmdc_runtime/api/endpoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,036   copying build/lib/nmdc_runtime/api/endpoints/jobs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,038   copying build/lib/nmdc_runtime/api/endpoints/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,040   copying build/lib/nmdc_runtime/api/endpoints/queries.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,043   copying build/lib/nmdc_runtime/api/endpoints/triggers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2021-08-23T22:27:05,045   copying build/lib/nmdc_runtime/api/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api
2021-08-23T22:27:05,047   copying build/lib/nmdc_runtime/api/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api
2021-08-23T22:27:05,050   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,051   copying build/lib/nmdc_runtime/api/models/query.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,053   copying build/lib/nmdc_runtime/api/models/id.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,055   copying build/lib/nmdc_runtime/api/models/trigger.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,057   copying build/lib/nmdc_runtime/api/models/object_type.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,059   copying build/lib/nmdc_runtime/api/models/job.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,061   copying build/lib/nmdc_runtime/api/models/capability.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,063   copying build/lib/nmdc_runtime/api/models/site.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,065   copying build/lib/nmdc_runtime/api/models/object.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,068   copying build/lib/nmdc_runtime/api/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,069   copying build/lib/nmdc_runtime/api/models/operation.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,071   copying build/lib/nmdc_runtime/api/models/workflow.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,073   copying build/lib/nmdc_runtime/api/models/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,075   copying build/lib/nmdc_runtime/api/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2021-08-23T22:27:05,078   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2021-08-23T22:27:05,079   copying build/lib/nmdc_runtime/api/db/mongo.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2021-08-23T22:27:05,081   copying build/lib/nmdc_runtime/api/db/s3.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2021-08-23T22:27:05,083   copying build/lib/nmdc_runtime/api/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2021-08-23T22:27:05,085   copying build/lib/nmdc_runtime/api/db/terminus.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2021-08-23T22:27:05,087   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2021-08-23T22:27:05,088   copying build/lib/nmdc_runtime/api/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2021-08-23T22:27:05,090   copying build/lib/nmdc_runtime/api/core/auth.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2021-08-23T22:27:05,093   copying build/lib/nmdc_runtime/api/core/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2021-08-23T22:27:05,095   copying build/lib/nmdc_runtime/api/core/idgen.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2021-08-23T22:27:05,098   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster
2021-08-23T22:27:05,099   copying build/lib/nmdc_runtime/dagster/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster
2021-08-23T22:27:05,102   copying build/lib/nmdc_runtime/dagster/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster
2021-08-23T22:27:05,104   copying build/lib/nmdc_runtime/dagster/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster
2021-08-23T22:27:05,106   copying build/lib/nmdc_runtime/dagster/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster
2021-08-23T22:27:05,109   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster/translation
2021-08-23T22:27:05,109   copying build/lib/nmdc_runtime/dagster/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster/translation
2021-08-23T22:27:05,112   copying build/lib/nmdc_runtime/dagster/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster/translation
2021-08-23T22:27:05,114   copying build/lib/nmdc_runtime/dagster/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster/translation
2021-08-23T22:27:05,116   copying build/lib/nmdc_runtime/dagster/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster/translation
2021-08-23T22:27:05,118   copying build/lib/nmdc_runtime/dagster/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster/translation
2021-08-23T22:27:05,120   copying build/lib/nmdc_runtime/dagster/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster
2021-08-23T22:27:05,122   copying build/lib/nmdc_runtime/dagster/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/dagster
2021-08-23T22:27:05,125   copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime
2021-08-23T22:27:05,128   creating build/bdist.linux-armv7l/wheel/metadata-translation
2021-08-23T22:27:05,128   copying build/lib/metadata-translation/__init__.py -> build/bdist.linux-armv7l/wheel/metadata-translation
2021-08-23T22:27:05,131   creating build/bdist.linux-armv7l/wheel/metadata-translation/src
2021-08-23T22:27:05,132   creating build/bdist.linux-armv7l/wheel/metadata-translation/src/data
2021-08-23T22:27:05,134   copying build/lib/metadata-translation/src/data/__init__.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/data
2021-08-23T22:27:05,136   creating build/bdist.linux-armv7l/wheel/metadata-translation/src/bin
2021-08-23T22:27:05,137   copying build/lib/metadata-translation/src/bin/validate_json.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin
2021-08-23T22:27:05,140   copying build/lib/metadata-translation/src/bin/align_nmdc_datatypes.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin
2021-08-23T22:27:05,143   creating build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,143   copying build/lib/metadata-translation/src/bin/lib/data_operations.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,147   copying build/lib/metadata-translation/src/bin/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,149   copying build/lib/metadata-translation/src/bin/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,153   copying build/lib/metadata-translation/src/bin/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,155   copying build/lib/metadata-translation/src/bin/lib/__init__.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,157   copying build/lib/metadata-translation/src/bin/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,160   copying build/lib/metadata-translation/src/bin/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin/lib
2021-08-23T22:27:05,163   copying build/lib/metadata-translation/src/bin/__init__.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin
2021-08-23T22:27:05,165   copying build/lib/metadata-translation/src/bin/mandatory_mixs_terms.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin
2021-08-23T22:27:05,167   copying build/lib/metadata-translation/src/bin/fix_omics_processing_json.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin
2021-08-23T22:27:05,169   copying build/lib/metadata-translation/src/bin/execute_etl_pipeline.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src/bin
2021-08-23T22:27:05,172   copying build/lib/metadata-translation/src/__init__.py -> build/bdist.linux-armv7l/wheel/metadata-translation/src
2021-08-23T22:27:05,174   creating build/bdist.linux-armv7l/wheel/tests
2021-08-23T22:27:05,175   creating build/bdist.linux-armv7l/wheel/tests/test_pipelines
2021-08-23T22:27:05,177   copying build/lib/tests/test_pipelines/test_hello.py -> build/bdist.linux-armv7l/wheel/tests/test_pipelines
2021-08-23T22:27:05,179   copying build/lib/tests/test_pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_pipelines
2021-08-23T22:27:05,182   creating build/bdist.linux-armv7l/wheel/tests/test_solids
2021-08-23T22:27:05,183   copying build/lib/tests/test_solids/test_hello.py -> build/bdist.linux-armv7l/wheel/tests/test_solids
2021-08-23T22:27:05,185   copying build/lib/tests/test_solids/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_solids
2021-08-23T22:27:05,186   running install_egg_info
2021-08-23T22:27:05,199   running egg_info
2021-08-23T22:27:05,199   writing nmdc_runtime.egg-info/PKG-INFO
2021-08-23T22:27:05,202   writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt
2021-08-23T22:27:05,203   writing entry points to nmdc_runtime.egg-info/entry_points.txt
2021-08-23T22:27:05,204   writing requirements to nmdc_runtime.egg-info/requires.txt
2021-08-23T22:27:05,206   writing top-level names to nmdc_runtime.egg-info/top_level.txt
2021-08-23T22:27:05,244   reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt'
2021-08-23T22:27:05,280   adding license file 'LICENSE'
2021-08-23T22:27:05,296   writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt'
2021-08-23T22:27:05,299   Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-0.1.0-py3.9.egg-info
2021-08-23T22:27:05,312   running install_scripts
2021-08-23T22:27:05,445   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-08-23T22:27:05,449   creating build/bdist.linux-armv7l/wheel/nmdc_runtime-0.1.0.dist-info/WHEEL
2021-08-23T22:27:05,452   creating '/tmp/pip-wheel-hfkdcrj7/nmdc_runtime-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-08-23T22:27:05,454   adding 'metadata-translation/__init__.py'
2021-08-23T22:27:05,456   adding 'metadata-translation/src/__init__.py'
2021-08-23T22:27:05,458   adding 'metadata-translation/src/bin/__init__.py'
2021-08-23T22:27:05,459   adding 'metadata-translation/src/bin/align_nmdc_datatypes.py'
2021-08-23T22:27:05,462   adding 'metadata-translation/src/bin/execute_etl_pipeline.py'
2021-08-23T22:27:05,464   adding 'metadata-translation/src/bin/fix_omics_processing_json.py'
2021-08-23T22:27:05,465   adding 'metadata-translation/src/bin/mandatory_mixs_terms.py'
2021-08-23T22:27:05,466   adding 'metadata-translation/src/bin/validate_json.py'
2021-08-23T22:27:05,468   adding 'metadata-translation/src/bin/lib/__init__.py'
2021-08-23T22:27:05,474   adding 'metadata-translation/src/bin/lib/data_operations.py'
2021-08-23T22:27:05,475   adding 'metadata-translation/src/bin/lib/extract_nmdc_data.py'
2021-08-23T22:27:05,477   adding 'metadata-translation/src/bin/lib/load_nmdc_data.py'
2021-08-23T22:27:05,481   adding 'metadata-translation/src/bin/lib/nmdc_dataframes.py'
2021-08-23T22:27:05,483   adding 'metadata-translation/src/bin/lib/nmdc_etl_class.py'
2021-08-23T22:27:05,488   adding 'metadata-translation/src/bin/lib/transform_nmdc_data.py'
2021-08-23T22:27:05,490   adding 'metadata-translation/src/data/__init__.py'
2021-08-23T22:27:05,492   adding 'nmdc_runtime/__init__.py'
2021-08-23T22:27:05,494   adding 'nmdc_runtime/terminusdbgen.py'
2021-08-23T22:27:05,495   adding 'nmdc_runtime/util.py'
2021-08-23T22:27:05,497   adding 'nmdc_runtime/api/__init__.py'
2021-08-23T22:27:05,499   adding 'nmdc_runtime/api/main.py'
2021-08-23T22:27:05,501   adding 'nmdc_runtime/api/boot/__init__.py'
2021-08-23T22:27:05,502   adding 'nmdc_runtime/api/boot/capabilities.py'
2021-08-23T22:27:05,503   adding 'nmdc_runtime/api/boot/object_types.py'
2021-08-23T22:27:05,504   adding 'nmdc_runtime/api/boot/triggers.py'
2021-08-23T22:27:05,505   adding 'nmdc_runtime/api/boot/workflows.py'
2021-08-23T22:27:05,507   adding 'nmdc_runtime/api/core/__init__.py'
2021-08-23T22:27:05,509   adding 'nmdc_runtime/api/core/auth.py'
2021-08-23T22:27:05,510   adding 'nmdc_runtime/api/core/idgen.py'
2021-08-23T22:27:05,512   adding 'nmdc_runtime/api/core/util.py'
2021-08-23T22:27:05,514   adding 'nmdc_runtime/api/db/__init__.py'
2021-08-23T22:27:05,515   adding 'nmdc_runtime/api/db/mongo.py'
2021-08-23T22:27:05,516   adding 'nmdc_runtime/api/db/s3.py'
2021-08-23T22:27:05,517   adding 'nmdc_runtime/api/db/terminus.py'
2021-08-23T22:27:05,519   adding 'nmdc_runtime/api/endpoints/__init__.py'
2021-08-23T22:27:05,520   adding 'nmdc_runtime/api/endpoints/capabilities.py'
2021-08-23T22:27:05,522   adding 'nmdc_runtime/api/endpoints/ids.py'
2021-08-23T22:27:05,524   adding 'nmdc_runtime/api/endpoints/jobs.py'
2021-08-23T22:27:05,525   adding 'nmdc_runtime/api/endpoints/object_types.py'
2021-08-23T22:27:05,526   adding 'nmdc_runtime/api/endpoints/objects.py'
2021-08-23T22:27:05,528   adding 'nmdc_runtime/api/endpoints/operations.py'
2021-08-23T22:27:05,529   adding 'nmdc_runtime/api/endpoints/queries.py'
2021-08-23T22:27:05,531   adding 'nmdc_runtime/api/endpoints/sites.py'
2021-08-23T22:27:05,532   adding 'nmdc_runtime/api/endpoints/triggers.py'
2021-08-23T22:27:05,534   adding 'nmdc_runtime/api/endpoints/users.py'
2021-08-23T22:27:05,535   adding 'nmdc_runtime/api/endpoints/util.py'
2021-08-23T22:27:05,536   adding 'nmdc_runtime/api/endpoints/workflows.py'
2021-08-23T22:27:05,538   adding 'nmdc_runtime/api/models/__init__.py'
2021-08-23T22:27:05,539   adding 'nmdc_runtime/api/models/capability.py'
2021-08-23T22:27:05,541   adding 'nmdc_runtime/api/models/id.py'
2021-08-23T22:27:05,542   adding 'nmdc_runtime/api/models/job.py'
2021-08-23T22:27:05,543   adding 'nmdc_runtime/api/models/object.py'
2021-08-23T22:27:05,544   adding 'nmdc_runtime/api/models/object_type.py'
2021-08-23T22:27:05,546   adding 'nmdc_runtime/api/models/operation.py'
2021-08-23T22:27:05,547   adding 'nmdc_runtime/api/models/query.py'
2021-08-23T22:27:05,548   adding 'nmdc_runtime/api/models/site.py'
2021-08-23T22:27:05,549   adding 'nmdc_runtime/api/models/trigger.py'
2021-08-23T22:27:05,551   adding 'nmdc_runtime/api/models/user.py'
2021-08-23T22:27:05,552   adding 'nmdc_runtime/api/models/util.py'
2021-08-23T22:27:05,553   adding 'nmdc_runtime/api/models/workflow.py'
2021-08-23T22:27:05,555   adding 'nmdc_runtime/dagster/__init__.py'
2021-08-23T22:27:05,556   adding 'nmdc_runtime/dagster/graphs.py'
2021-08-23T22:27:05,558   adding 'nmdc_runtime/dagster/ops.py'
2021-08-23T22:27:05,560   adding 'nmdc_runtime/dagster/repository.py'
2021-08-23T22:27:05,562   adding 'nmdc_runtime/dagster/resources.py'
2021-08-23T22:27:05,563   adding 'nmdc_runtime/dagster/util.py'
2021-08-23T22:27:05,565   adding 'nmdc_runtime/dagster/translation/__init__.py'
2021-08-23T22:27:05,566   adding 'nmdc_runtime/dagster/translation/emsl.py'
2021-08-23T22:27:05,567   adding 'nmdc_runtime/dagster/translation/gold.py'
2021-08-23T22:27:05,569   adding 'nmdc_runtime/dagster/translation/jgi.py'
2021-08-23T22:27:05,570   adding 'nmdc_runtime/dagster/translation/util.py'
2021-08-23T22:27:05,572   adding 'nmdc_runtime/lib/__init__.py'
2021-08-23T22:27:05,573   adding 'nmdc_runtime/lib/extract_nmdc_data.py'
2021-08-23T22:27:05,574   adding 'nmdc_runtime/lib/load_nmdc_data.py'
2021-08-23T22:27:05,578   adding 'nmdc_runtime/lib/nmdc_dataframes.py'
2021-08-23T22:27:05,580   adding 'nmdc_runtime/lib/nmdc_etl_class.py'
2021-08-23T22:27:05,586   adding 'nmdc_runtime/lib/transform_nmdc_data.py'
2021-08-23T22:27:05,590   adding 'tests/test_pipelines/__init__.py'
2021-08-23T22:27:05,591   adding 'tests/test_pipelines/test_hello.py'
2021-08-23T22:27:05,592   adding 'tests/test_solids/__init__.py'
2021-08-23T22:27:05,593   adding 'tests/test_solids/test_hello.py'
2021-08-23T22:27:05,595   adding 'nmdc_runtime-0.1.0.dist-info/LICENSE'
2021-08-23T22:27:05,596   adding 'nmdc_runtime-0.1.0.dist-info/METADATA'
2021-08-23T22:27:05,597   adding 'nmdc_runtime-0.1.0.dist-info/WHEEL'
2021-08-23T22:27:05,598   adding 'nmdc_runtime-0.1.0.dist-info/entry_points.txt'
2021-08-23T22:27:05,599   adding 'nmdc_runtime-0.1.0.dist-info/top_level.txt'
2021-08-23T22:27:05,600   adding 'nmdc_runtime-0.1.0.dist-info/RECORD'
2021-08-23T22:27:05,604   removing build/bdist.linux-armv7l/wheel
2021-08-23T22:27:05,724   Building wheel for nmdc-runtime (setup.py): finished with status 'done'
2021-08-23T22:27:05,728   Created wheel for nmdc-runtime: filename=nmdc_runtime-0.1.0-py3-none-any.whl size=112973 sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943
2021-08-23T22:27:05,728   Stored in directory: /tmp/pip-ephem-wheel-cache-au4s59b_/wheels/92/97/cc/8d9fbcb80e7d7f73d677aab4ddfe3355549ea0e4db2544f43f
2021-08-23T22:27:05,742 Successfully built nmdc-runtime
2021-08-23T22:27:05,750 Removed build tracker: '/tmp/pip-req-tracker-96g9jdyp'