2021-08-24T11:15:36,542 Created temporary directory: /tmp/pip-ephem-wheel-cache-wx8yy_6v
2021-08-24T11:15:36,546 Created temporary directory: /tmp/pip-req-tracker-eiq6dj_9
2021-08-24T11:15:36,547 Initialized build tracking at /tmp/pip-req-tracker-eiq6dj_9
2021-08-24T11:15:36,547 Created build tracker: /tmp/pip-req-tracker-eiq6dj_9
2021-08-24T11:15:36,547 Entered build tracker: /tmp/pip-req-tracker-eiq6dj_9
2021-08-24T11:15:36,548 Created temporary directory: /tmp/pip-wheel-57sh1ock
2021-08-24T11:15:36,580 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-08-24T11:15:36,583 2 location(s) to search for versions of clearcnv:
2021-08-24T11:15:36,583 * https://pypi.org/simple/clearcnv/
2021-08-24T11:15:36,583 * https://www.piwheels.org/simple/clearcnv/
2021-08-24T11:15:36,583 Fetching project page and analyzing links: https://pypi.org/simple/clearcnv/
2021-08-24T11:15:36,584 Getting page https://pypi.org/simple/clearcnv/
2021-08-24T11:15:36,585 Found index url https://pypi.org/simple
2021-08-24T11:15:36,672   Found link https://files.pythonhosted.org/packages/9e/56/2bd290685ae8b425115d75335e1d227330c4028ba6914a325e2963a4dc0f/clearCNV-0.303.tar.gz#sha256=df5bb11cec7f1609ac6c82710262c9201cc1f4c59de046f6340e6e00aa67e3ec (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.303
2021-08-24T11:15:36,673 Fetching project page and analyzing links: https://www.piwheels.org/simple/clearcnv/
2021-08-24T11:15:36,673 Getting page https://www.piwheels.org/simple/clearcnv/
2021-08-24T11:15:36,674 Found index url https://www.piwheels.org/simple
2021-08-24T11:15:36,789 Skipping link: not a file: https://www.piwheels.org/simple/clearcnv/
2021-08-24T11:15:36,789 Skipping link: not a file: https://pypi.org/simple/clearcnv/
2021-08-24T11:15:36,810 Given no hashes to check 1 links for project 'clearcnv': discarding no candidates
2021-08-24T11:15:36,824 Collecting clearcnv==0.303
2021-08-24T11:15:36,826   Created temporary directory: /tmp/pip-unpack-52du3rsq
2021-08-24T11:15:37,031   Downloading clearCNV-0.303.tar.gz (1.8 MB)
2021-08-24T11:15:37,667   Added clearcnv==0.303 from https://files.pythonhosted.org/packages/9e/56/2bd290685ae8b425115d75335e1d227330c4028ba6914a325e2963a4dc0f/clearCNV-0.303.tar.gz#sha256=df5bb11cec7f1609ac6c82710262c9201cc1f4c59de046f6340e6e00aa67e3ec to build tracker '/tmp/pip-req-tracker-eiq6dj_9'
2021-08-24T11:15:37,668     Running setup.py (path:/tmp/pip-wheel-57sh1ock/clearcnv_8f2f503af04e49dfb4e781d405bb7cc2/setup.py) egg_info for package clearcnv
2021-08-24T11:15:37,669     Created temporary directory: /tmp/pip-pip-egg-info-x9exf8_y
2021-08-24T11:15:37,669     Running command python setup.py egg_info
2021-08-24T11:15:38,766     running egg_info
2021-08-24T11:15:38,768     creating /tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info
2021-08-24T11:15:38,769     writing /tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/PKG-INFO
2021-08-24T11:15:38,773     writing dependency_links to /tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/dependency_links.txt
2021-08-24T11:15:38,774     writing entry points to /tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/entry_points.txt
2021-08-24T11:15:38,775     writing requirements to /tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/requires.txt
2021-08-24T11:15:38,776     writing top-level names to /tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/top_level.txt
2021-08-24T11:15:38,778     writing manifest file '/tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/SOURCES.txt'
2021-08-24T11:15:38,786     reading manifest file '/tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/SOURCES.txt'
2021-08-24T11:15:38,788     reading manifest template 'MANIFEST.in'
2021-08-24T11:15:38,789     warning: no files found matching 'AUTHORS.rst'
2021-08-24T11:15:38,789     warning: no files found matching 'CONTRIBUTING.rst'
2021-08-24T11:15:38,821     warning: no previously-included files matching '__pycache__' found under directory '*'
2021-08-24T11:15:38,822     warning: no previously-included files matching '*.py[co]' found under directory '*'
2021-08-24T11:15:38,823     warning: no previously-included files matching '*.sh' found under directory '*'
2021-08-24T11:15:38,824     warning: no files found matching '*.rst' under directory 'docs'
2021-08-24T11:15:38,824     warning: no files found matching 'conf.py' under directory 'docs'
2021-08-24T11:15:38,824     warning: no files found matching 'Makefile' under directory 'docs'
2021-08-24T11:15:38,824     warning: no files found matching 'make.bat' under directory 'docs'
2021-08-24T11:15:38,825     warning: no files found matching '*.jpg' under directory 'docs'
2021-08-24T11:15:38,825     warning: no files found matching '*.png' under directory 'docs'
2021-08-24T11:15:38,825     warning: no files found matching '*.gif' under directory 'docs'
2021-08-24T11:15:38,846     warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets'
2021-08-24T11:15:38,856     warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets'
2021-08-24T11:15:38,911     warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static'
2021-08-24T11:15:38,924     adding license file 'LICENSE'
2021-08-24T11:15:38,930     writing manifest file '/tmp/pip-pip-egg-info-x9exf8_y/clearCNV.egg-info/SOURCES.txt'
2021-08-24T11:15:38,997   Source in /tmp/pip-wheel-57sh1ock/clearcnv_8f2f503af04e49dfb4e781d405bb7cc2 has version 0.303, which satisfies requirement clearcnv==0.303 from https://files.pythonhosted.org/packages/9e/56/2bd290685ae8b425115d75335e1d227330c4028ba6914a325e2963a4dc0f/clearCNV-0.303.tar.gz#sha256=df5bb11cec7f1609ac6c82710262c9201cc1f4c59de046f6340e6e00aa67e3ec
2021-08-24T11:15:38,998   Removed clearcnv==0.303 from https://files.pythonhosted.org/packages/9e/56/2bd290685ae8b425115d75335e1d227330c4028ba6914a325e2963a4dc0f/clearCNV-0.303.tar.gz#sha256=df5bb11cec7f1609ac6c82710262c9201cc1f4c59de046f6340e6e00aa67e3ec from build tracker '/tmp/pip-req-tracker-eiq6dj_9'
2021-08-24T11:15:39,004 Created temporary directory: /tmp/pip-unpack-r7t3ckco
2021-08-24T11:15:39,005 Building wheels for collected packages: clearcnv
2021-08-24T11:15:39,010   Created temporary directory: /tmp/pip-wheel-bskdwt8y
2021-08-24T11:15:39,011   Building wheel for clearcnv (setup.py): started
2021-08-24T11:15:39,011   Destination directory: /tmp/pip-wheel-bskdwt8y
2021-08-24T11:15:39,012   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-57sh1ock/clearcnv_8f2f503af04e49dfb4e781d405bb7cc2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-57sh1ock/clearcnv_8f2f503af04e49dfb4e781d405bb7cc2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bskdwt8y
2021-08-24T11:15:40,076   running bdist_wheel
2021-08-24T11:15:40,080   running build
2021-08-24T11:15:40,081   running build_py
2021-08-24T11:15:40,088   creating build
2021-08-24T11:15:40,088   creating build/lib
2021-08-24T11:15:40,089   creating build/lib/tests
2021-08-24T11:15:40,090   copying tests/__init__.py -> build/lib/tests
2021-08-24T11:15:40,092   copying tests/test_misc.py -> build/lib/tests
2021-08-24T11:15:40,095   creating build/lib/clearCNV
2021-08-24T11:15:40,095   copying clearCNV/workflow_reassignment.py -> build/lib/clearCNV
2021-08-24T11:15:40,097   copying clearCNV/__init__.py -> build/lib/clearCNV
2021-08-24T11:15:40,099   copying clearCNV/cnv_calling.py -> build/lib/clearCNV
2021-08-24T11:15:40,101   copying clearCNV/visualize_scores.py -> build/lib/clearCNV
2021-08-24T11:15:40,103   copying clearCNV/matchscores.py -> build/lib/clearCNV
2021-08-24T11:15:40,105   copying clearCNV/__main__.py -> build/lib/clearCNV
2021-08-24T11:15:40,108   copying clearCNV/misc.py -> build/lib/clearCNV
2021-08-24T11:15:40,110   copying clearCNV/cnv_arithmetics.py -> build/lib/clearCNV
2021-08-24T11:15:40,112   copying clearCNV/_version.py -> build/lib/clearCNV
2021-08-24T11:15:40,114   copying clearCNV/workflow_cnv_calling.py -> build/lib/clearCNV
2021-08-24T11:15:40,116   copying clearCNV/util.py -> build/lib/clearCNV
2021-08-24T11:15:40,120   creating build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,121   copying clearCNV/viz_reassignment/__init__.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,122   copying clearCNV/viz_reassignment/settings.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,124   copying clearCNV/viz_reassignment/cache.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,126   copying clearCNV/viz_reassignment/callbacks.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,128   copying clearCNV/viz_reassignment/store.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,131   copying clearCNV/viz_reassignment/ui.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,133   copying clearCNV/viz_reassignment/ui_plots.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,135   copying clearCNV/viz_reassignment/app.py -> build/lib/clearCNV/viz_reassignment
2021-08-24T11:15:40,137   running egg_info
2021-08-24T11:15:40,148   writing clearCNV.egg-info/PKG-INFO
2021-08-24T11:15:40,150   writing dependency_links to clearCNV.egg-info/dependency_links.txt
2021-08-24T11:15:40,152   writing entry points to clearCNV.egg-info/entry_points.txt
2021-08-24T11:15:40,153   writing requirements to clearCNV.egg-info/requires.txt
2021-08-24T11:15:40,154   writing top-level names to clearCNV.egg-info/top_level.txt
2021-08-24T11:15:40,160   reading manifest file 'clearCNV.egg-info/SOURCES.txt'
2021-08-24T11:15:40,165   reading manifest template 'MANIFEST.in'
2021-08-24T11:15:40,165   warning: no files found matching 'AUTHORS.rst'
2021-08-24T11:15:40,166   warning: no files found matching 'CONTRIBUTING.rst'
2021-08-24T11:15:40,196   warning: no previously-included files matching '__pycache__' found under directory '*'
2021-08-24T11:15:40,197   warning: no previously-included files matching '*.py[co]' found under directory '*'
2021-08-24T11:15:40,198   warning: no previously-included files matching '*.sh' found under directory '*'
2021-08-24T11:15:40,199   warning: no files found matching '*.rst' under directory 'docs'
2021-08-24T11:15:40,199   warning: no files found matching 'conf.py' under directory 'docs'
2021-08-24T11:15:40,199   warning: no files found matching 'Makefile' under directory 'docs'
2021-08-24T11:15:40,199   warning: no files found matching 'make.bat' under directory 'docs'
2021-08-24T11:15:40,199   warning: no files found matching '*.jpg' under directory 'docs'
2021-08-24T11:15:40,199   warning: no files found matching '*.png' under directory 'docs'
2021-08-24T11:15:40,200   warning: no files found matching '*.gif' under directory 'docs'
2021-08-24T11:15:40,219   warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets'
2021-08-24T11:15:40,227   warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets'
2021-08-24T11:15:40,277   warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static'
2021-08-24T11:15:40,288   adding license file 'LICENSE'
2021-08-24T11:15:40,299   writing manifest file 'clearCNV.egg-info/SOURCES.txt'
2021-08-24T11:15:40,311   creating build/lib/tests/testdata
2021-08-24T11:15:40,312   copying tests/testdata/GC_annotations.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,315   copying tests/testdata/allbams.txt -> build/lib/tests/testdata
2021-08-24T11:15:40,317   copying tests/testdata/allmerged.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,319   copying tests/testdata/annotations.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,321   copying tests/testdata/annotations2.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,323   copying tests/testdata/bamfiles.txt -> build/lib/tests/testdata
2021-08-24T11:15:40,326   copying tests/testdata/bedfile.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,328   copying tests/testdata/bedfile_alt.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,330   copying tests/testdata/cov.tsv -> build/lib/tests/testdata
2021-08-24T11:15:40,333   copying tests/testdata/cov_reassignment.tsv -> build/lib/tests/testdata
2021-08-24T11:15:40,352   copying tests/testdata/coverages.tsv -> build/lib/tests/testdata
2021-08-24T11:15:40,355   copying tests/testdata/mappability.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,357   copying tests/testdata/mappability.eq.1.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,360   copying tests/testdata/matchscores.tsv -> build/lib/tests/testdata
2021-08-24T11:15:40,363   copying tests/testdata/merged.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,365   copying tests/testdata/meta.tsv -> build/lib/tests/testdata
2021-08-24T11:15:40,367   copying tests/testdata/panel1.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,371   copying tests/testdata/panel2.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,374   copying tests/testdata/reassignment_p1_bamfiles.txt -> build/lib/tests/testdata
2021-08-24T11:15:40,376   copying tests/testdata/reassignment_p2_bamfiles.txt -> build/lib/tests/testdata
2021-08-24T11:15:40,379   copying tests/testdata/reassignment_union.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,382   copying tests/testdata/reference.fa -> build/lib/tests/testdata
2021-08-24T11:15:40,386   copying tests/testdata/reference.fa.fai -> build/lib/tests/testdata
2021-08-24T11:15:40,388   copying tests/testdata/sample01.rtbed -> build/lib/tests/testdata
2021-08-24T11:15:40,391   copying tests/testdata/sample02.rtbed -> build/lib/tests/testdata
2021-08-24T11:15:40,393   copying tests/testdata/sample03.rtbed -> build/lib/tests/testdata
2021-08-24T11:15:40,395   copying tests/testdata/small.bam -> build/lib/tests/testdata
2021-08-24T11:15:40,401   copying tests/testdata/small.bam.bai -> build/lib/tests/testdata
2021-08-24T11:15:40,406   copying tests/testdata/small.rtbed -> build/lib/tests/testdata
2021-08-24T11:15:40,408   copying tests/testdata/targets.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,411   copying tests/testdata/test_merge_bed_input.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,413   copying tests/testdata/test_merge_bed_output.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,415   copying tests/testdata/test_merge_beds_input_0.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,418   copying tests/testdata/test_merge_beds_input_1.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,420   copying tests/testdata/test_merge_beds_output.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,422   copying tests/testdata/test_reassign_meta.tsv -> build/lib/tests/testdata
2021-08-24T11:15:40,425   copying tests/testdata/test_reassign_panel0.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,427   copying tests/testdata/test_reassign_panel1.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,430   copying tests/testdata/test_reassign_small_0.bam -> build/lib/tests/testdata
2021-08-24T11:15:40,435   copying tests/testdata/test_reassign_small_0.bam.bai -> build/lib/tests/testdata
2021-08-24T11:15:40,439   copying tests/testdata/test_reassign_small_1.bam -> build/lib/tests/testdata
2021-08-24T11:15:40,444   copying tests/testdata/test_reassign_small_1.bam.bai -> build/lib/tests/testdata
2021-08-24T11:15:40,449   copying tests/testdata/test_reassignment_coverages.tsv -> build/lib/tests/testdata
2021-08-24T11:15:40,451   copying tests/testdata/test_reassignment_p1_bamfiles.txt -> build/lib/tests/testdata
2021-08-24T11:15:40,454   copying tests/testdata/test_reassignment_p2_bamfiles.txt -> build/lib/tests/testdata
2021-08-24T11:15:40,456   copying tests/testdata/test_reassignment_ref.fa -> build/lib/tests/testdata
2021-08-24T11:15:40,459   copying tests/testdata/test_reassignment_ref.fa.fai -> build/lib/tests/testdata
2021-08-24T11:15:40,461   copying tests/testdata/test_reassignment_union.bed -> build/lib/tests/testdata
2021-08-24T11:15:40,463   creating build/lib/tests/testdata/.snakemake
2021-08-24T11:15:40,463   creating build/lib/tests/testdata/.snakemake/metadata
2021-08-24T11:15:40,465   copying tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y= -> build/lib/tests/testdata/.snakemake/metadata
2021-08-24T11:15:40,467   creating build/lib/tests/testdata/covs
2021-08-24T11:15:40,468   copying tests/testdata/covs/test_reassign_small_0.rtbed -> build/lib/tests/testdata/covs
2021-08-24T11:15:40,471   copying tests/testdata/covs/test_reassign_small_1.rtbed -> build/lib/tests/testdata/covs
2021-08-24T11:15:40,473   creating build/lib/tests/testdata/logs
2021-08-24T11:15:40,474   copying tests/testdata/logs/merge_coverages.log -> build/lib/tests/testdata/logs
2021-08-24T11:15:40,476   creating build/lib/tests/testdata/logs/coverages
2021-08-24T11:15:40,477   copying tests/testdata/logs/coverages/test_reassign_small_0.log -> build/lib/tests/testdata/logs/coverages
2021-08-24T11:15:40,479   copying tests/testdata/logs/coverages/test_reassign_small_1.log -> build/lib/tests/testdata/logs/coverages
2021-08-24T11:15:40,481   creating build/lib/tests/testdata/sge_log
2021-08-24T11:15:40,482   copying tests/testdata/sge_log/bash-3828326.log -> build/lib/tests/testdata/sge_log
2021-08-24T11:15:40,484   copying tests/testdata/sge_log/bash-3828327.log -> build/lib/tests/testdata/sge_log
2021-08-24T11:15:40,487   copying tests/testdata/sge_log/bash-3828329.log -> build/lib/tests/testdata/sge_log
2021-08-24T11:15:40,489   creating build/lib/clearCNV/workflow
2021-08-24T11:15:40,490   copying clearCNV/workflow/Snakefile_cnv_calling -> build/lib/clearCNV/workflow
2021-08-24T11:15:40,493   copying clearCNV/workflow/Snakefile_reassignment -> build/lib/clearCNV/workflow
2021-08-24T11:15:40,496   copying clearCNV/workflow/bih_cluster.json -> build/lib/clearCNV/workflow
2021-08-24T11:15:40,498   copying clearCNV/workflow/config_cnv_calling.yml -> build/lib/clearCNV/workflow
2021-08-24T11:15:40,501   copying clearCNV/workflow/config_reassignment.yml -> build/lib/clearCNV/workflow
2021-08-24T11:15:40,503   creating build/lib/clearCNV/viz_reassignment/assets
2021-08-24T11:15:40,504   copying clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/lib/clearCNV/viz_reassignment/assets
2021-08-24T11:15:40,513   copying clearCNV/viz_reassignment/assets/clear-cnv.css -> build/lib/clearCNV/viz_reassignment/assets
2021-08-24T11:15:40,515   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome
2021-08-24T11:15:40,515   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/css
2021-08-24T11:15:40,517   copying clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/css
2021-08-24T11:15:40,521   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,522   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,529   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,547   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,555   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,562   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,567   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,571   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,578   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,581   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,584   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,587   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,593   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,616   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,623   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,628   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,635   UPDATING build/lib/clearCNV/_version.py
2021-08-24T11:15:40,636   set build/lib/clearCNV/_version.py to '0.303'
2021-08-24T11:15:40,642   installing to build/bdist.linux-armv7l/wheel
2021-08-24T11:15:40,642   running install
2021-08-24T11:15:40,643   running install_lib
2021-08-24T11:15:40,647   creating build/bdist.linux-armv7l
2021-08-24T11:15:40,647   creating build/bdist.linux-armv7l/wheel
2021-08-24T11:15:40,649   creating build/bdist.linux-armv7l/wheel/tests
2021-08-24T11:15:40,650   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2021-08-24T11:15:40,653   creating build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,655   copying build/lib/tests/testdata/cov_reassignment.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,672   copying build/lib/tests/testdata/test_merge_bed_input.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,674   copying build/lib/tests/testdata/test_reassign_small_0.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,678   copying build/lib/tests/testdata/coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,680   copying build/lib/tests/testdata/small.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,685   creating build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake
2021-08-24T11:15:40,686   creating build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake/metadata
2021-08-24T11:15:40,687   copying build/lib/tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y= -> build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake/metadata
2021-08-24T11:15:40,690   creating build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-08-24T11:15:40,691   copying build/lib/tests/testdata/covs/test_reassign_small_1.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-08-24T11:15:40,693   copying build/lib/tests/testdata/covs/test_reassign_small_0.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-08-24T11:15:40,695   copying build/lib/tests/testdata/test_reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,697   copying build/lib/tests/testdata/test_merge_beds_input_1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,699   copying build/lib/tests/testdata/reference.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,701   creating build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-08-24T11:15:40,702   copying build/lib/tests/testdata/sge_log/bash-3828326.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-08-24T11:15:40,704   copying build/lib/tests/testdata/sge_log/bash-3828329.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-08-24T11:15:40,706   copying build/lib/tests/testdata/sge_log/bash-3828327.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-08-24T11:15:40,708   copying build/lib/tests/testdata/reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,710   copying build/lib/tests/testdata/panel2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,713   copying build/lib/tests/testdata/sample01.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,715   copying build/lib/tests/testdata/test_reassignment_coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,717   copying build/lib/tests/testdata/annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,719   copying build/lib/tests/testdata/matchscores.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,722   copying build/lib/tests/testdata/test_reassign_small_1.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,726   copying build/lib/tests/testdata/merged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,728   copying build/lib/tests/testdata/mappability.eq.1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,730   copying build/lib/tests/testdata/allbams.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,732   copying build/lib/tests/testdata/test_merge_beds_input_0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,734   copying build/lib/tests/testdata/reference.fa -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,736   copying build/lib/tests/testdata/annotations2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,738   copying build/lib/tests/testdata/test_reassign_meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,740   copying build/lib/tests/testdata/test_reassignment_ref.fa -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,743   copying build/lib/tests/testdata/test_reassign_panel0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,745   copying build/lib/tests/testdata/test_reassign_panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,747   copying build/lib/tests/testdata/reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,750   copying build/lib/tests/testdata/panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,752   copying build/lib/tests/testdata/cov.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,755   copying build/lib/tests/testdata/reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,757   copying build/lib/tests/testdata/mappability.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,759   copying build/lib/tests/testdata/bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,761   copying build/lib/tests/testdata/targets.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,763   copying build/lib/tests/testdata/test_merge_bed_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,765   copying build/lib/tests/testdata/test_reassign_small_1.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,769   copying build/lib/tests/testdata/small.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,771   copying build/lib/tests/testdata/small.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,776   copying build/lib/tests/testdata/test_reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,778   copying build/lib/tests/testdata/test_reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,780   copying build/lib/tests/testdata/sample03.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,782   copying build/lib/tests/testdata/bedfile.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,784   copying build/lib/tests/testdata/bedfile_alt.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,786   copying build/lib/tests/testdata/meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,788   copying build/lib/tests/testdata/test_reassignment_ref.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,791   creating build/bdist.linux-armv7l/wheel/tests/testdata/logs
2021-08-24T11:15:40,792   creating build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-08-24T11:15:40,793   copying build/lib/tests/testdata/logs/coverages/test_reassign_small_0.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-08-24T11:15:40,795   copying build/lib/tests/testdata/logs/coverages/test_reassign_small_1.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-08-24T11:15:40,797   copying build/lib/tests/testdata/logs/merge_coverages.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs
2021-08-24T11:15:40,798   copying build/lib/tests/testdata/test_reassign_small_0.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,803   copying build/lib/tests/testdata/allmerged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,804   copying build/lib/tests/testdata/test_merge_beds_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,806   copying build/lib/tests/testdata/GC_annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,808   copying build/lib/tests/testdata/sample02.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-08-24T11:15:40,810   copying build/lib/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/tests
2021-08-24T11:15:40,813   creating build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,814   copying build/lib/clearCNV/workflow_reassignment.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,817   copying build/lib/clearCNV/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,818   copying build/lib/clearCNV/cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,821   copying build/lib/clearCNV/visualize_scores.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,824   creating build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-08-24T11:15:40,825   copying build/lib/clearCNV/workflow/Snakefile_reassignment -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-08-24T11:15:40,828   copying build/lib/clearCNV/workflow/Snakefile_cnv_calling -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-08-24T11:15:40,830   copying build/lib/clearCNV/workflow/bih_cluster.json -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-08-24T11:15:40,832   copying build/lib/clearCNV/workflow/config_cnv_calling.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-08-24T11:15:40,834   copying build/lib/clearCNV/workflow/config_reassignment.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-08-24T11:15:40,836   copying build/lib/clearCNV/matchscores.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,838   copying build/lib/clearCNV/__main__.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,841   copying build/lib/clearCNV/misc.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,844   copying build/lib/clearCNV/cnv_arithmetics.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,846   copying build/lib/clearCNV/_version.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,848   copying build/lib/clearCNV/workflow_cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,851   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,852   copying build/lib/clearCNV/viz_reassignment/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,854   copying build/lib/clearCNV/viz_reassignment/settings.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,856   copying build/lib/clearCNV/viz_reassignment/cache.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,858   copying build/lib/clearCNV/viz_reassignment/callbacks.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,860   copying build/lib/clearCNV/viz_reassignment/store.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,864   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-08-24T11:15:40,865   copying build/lib/clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-08-24T11:15:40,872   copying build/lib/clearCNV/viz_reassignment/assets/clear-cnv.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-08-24T11:15:40,874   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome
2021-08-24T11:15:40,876   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css
2021-08-24T11:15:40,877   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css
2021-08-24T11:15:40,883   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,883   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,891   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,912   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,915   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,920   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,922   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,928   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,931   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,951   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,956   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,963   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,968   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,971   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,978   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,983   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-08-24T11:15:40,990   copying build/lib/clearCNV/viz_reassignment/ui.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,993   copying build/lib/clearCNV/viz_reassignment/ui_plots.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,995   copying build/lib/clearCNV/viz_reassignment/app.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-08-24T11:15:40,997   copying build/lib/clearCNV/util.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-08-24T11:15:40,999   running install_egg_info
2021-08-24T11:15:41,008   Copying clearCNV.egg-info to build/bdist.linux-armv7l/wheel/clearCNV-0.303-py3.7.egg-info
2021-08-24T11:15:41,026   running install_scripts
2021-08-24T11:15:41,128   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-08-24T11:15:41,133   creating build/bdist.linux-armv7l/wheel/clearCNV-0.303.dist-info/WHEEL
2021-08-24T11:15:41,135   creating '/tmp/pip-wheel-bskdwt8y/clearCNV-0.303-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-08-24T11:15:41,138   adding 'clearCNV/__init__.py'
2021-08-24T11:15:41,141   adding 'clearCNV/__main__.py'
2021-08-24T11:15:41,142   adding 'clearCNV/_version.py'
2021-08-24T11:15:41,144   adding 'clearCNV/cnv_arithmetics.py'
2021-08-24T11:15:41,146   adding 'clearCNV/cnv_calling.py'
2021-08-24T11:15:41,148   adding 'clearCNV/matchscores.py'
2021-08-24T11:15:41,150   adding 'clearCNV/misc.py'
2021-08-24T11:15:41,152   adding 'clearCNV/util.py'
2021-08-24T11:15:41,154   adding 'clearCNV/visualize_scores.py'
2021-08-24T11:15:41,155   adding 'clearCNV/workflow_cnv_calling.py'
2021-08-24T11:15:41,156   adding 'clearCNV/workflow_reassignment.py'
2021-08-24T11:15:41,158   adding 'clearCNV/viz_reassignment/__init__.py'
2021-08-24T11:15:41,159   adding 'clearCNV/viz_reassignment/app.py'
2021-08-24T11:15:41,160   adding 'clearCNV/viz_reassignment/cache.py'
2021-08-24T11:15:41,162   adding 'clearCNV/viz_reassignment/callbacks.py'
2021-08-24T11:15:41,163   adding 'clearCNV/viz_reassignment/settings.py'
2021-08-24T11:15:41,165   adding 'clearCNV/viz_reassignment/store.py'
2021-08-24T11:15:41,166   adding 'clearCNV/viz_reassignment/ui.py'
2021-08-24T11:15:41,168   adding 'clearCNV/viz_reassignment/ui_plots.py'
2021-08-24T11:15:41,182   adding 'clearCNV/viz_reassignment/assets/bootstrap.min.css'
2021-08-24T11:15:41,184   adding 'clearCNV/viz_reassignment/assets/clear-cnv.css'
2021-08-24T11:15:41,191   adding 'clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css'
2021-08-24T11:15:41,216   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot'
2021-08-24T11:15:41,401   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg'
2021-08-24T11:15:41,428   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf'
2021-08-24T11:15:41,438   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff'
2021-08-24T11:15:41,447   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2'
2021-08-24T11:15:41,453   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot'
2021-08-24T11:15:41,476   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg'
2021-08-24T11:15:41,482   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf'
2021-08-24T11:15:41,485   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff'
2021-08-24T11:15:41,487   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2'
2021-08-24T11:15:41,518   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot'
2021-08-24T11:15:41,665   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg'
2021-08-24T11:15:41,701   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf'
2021-08-24T11:15:41,713   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff'
2021-08-24T11:15:41,723   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2'
2021-08-24T11:15:41,726   adding 'clearCNV/workflow/Snakefile_cnv_calling'
2021-08-24T11:15:41,727   adding 'clearCNV/workflow/Snakefile_reassignment'
2021-08-24T11:15:41,728   adding 'clearCNV/workflow/bih_cluster.json'
2021-08-24T11:15:41,729   adding 'clearCNV/workflow/config_cnv_calling.yml'
2021-08-24T11:15:41,730   adding 'clearCNV/workflow/config_reassignment.yml'
2021-08-24T11:15:41,733   adding 'tests/__init__.py'
2021-08-24T11:15:41,735   adding 'tests/test_misc.py'
2021-08-24T11:15:41,737   adding 'tests/testdata/GC_annotations.bed'
2021-08-24T11:15:41,739   adding 'tests/testdata/allbams.txt'
2021-08-24T11:15:41,740   adding 'tests/testdata/allmerged.bed'
2021-08-24T11:15:41,741   adding 'tests/testdata/annotations.bed'
2021-08-24T11:15:41,742   adding 'tests/testdata/annotations2.bed'
2021-08-24T11:15:41,743   adding 'tests/testdata/bamfiles.txt'
2021-08-24T11:15:41,744   adding 'tests/testdata/bedfile.bed'
2021-08-24T11:15:41,745   adding 'tests/testdata/bedfile_alt.bed'
2021-08-24T11:15:41,747   adding 'tests/testdata/cov.tsv'
2021-08-24T11:15:41,976   adding 'tests/testdata/cov_reassignment.tsv'
2021-08-24T11:15:41,981   adding 'tests/testdata/coverages.tsv'
2021-08-24T11:15:41,982   adding 'tests/testdata/mappability.bed'
2021-08-24T11:15:41,983   adding 'tests/testdata/mappability.eq.1.bed'
2021-08-24T11:15:41,986   adding 'tests/testdata/matchscores.tsv'
2021-08-24T11:15:41,987   adding 'tests/testdata/merged.bed'
2021-08-24T11:15:41,988   adding 'tests/testdata/meta.tsv'
2021-08-24T11:15:41,991   adding 'tests/testdata/panel1.bed'
2021-08-24T11:15:41,994   adding 'tests/testdata/panel2.bed'
2021-08-24T11:15:41,995   adding 'tests/testdata/reassignment_p1_bamfiles.txt'
2021-08-24T11:15:41,996   adding 'tests/testdata/reassignment_p2_bamfiles.txt'
2021-08-24T11:15:42,000   adding 'tests/testdata/reassignment_union.bed'
2021-08-24T11:15:42,003   adding 'tests/testdata/reference.fa'
2021-08-24T11:15:42,004   adding 'tests/testdata/reference.fa.fai'
2021-08-24T11:15:42,005   adding 'tests/testdata/sample01.rtbed'
2021-08-24T11:15:42,007   adding 'tests/testdata/sample02.rtbed'
2021-08-24T11:15:42,008   adding 'tests/testdata/sample03.rtbed'
2021-08-24T11:15:42,016   adding 'tests/testdata/small.bam'
2021-08-24T11:15:42,019   adding 'tests/testdata/small.bam.bai'
2021-08-24T11:15:42,020   adding 'tests/testdata/small.rtbed'
2021-08-24T11:15:42,022   adding 'tests/testdata/targets.bed'
2021-08-24T11:15:42,023   adding 'tests/testdata/test_merge_bed_input.bed'
2021-08-24T11:15:42,024   adding 'tests/testdata/test_merge_bed_output.bed'
2021-08-24T11:15:42,025   adding 'tests/testdata/test_merge_beds_input_0.bed'
2021-08-24T11:15:42,026   adding 'tests/testdata/test_merge_beds_input_1.bed'
2021-08-24T11:15:42,027   adding 'tests/testdata/test_merge_beds_output.bed'
2021-08-24T11:15:42,028   adding 'tests/testdata/test_reassign_meta.tsv'
2021-08-24T11:15:42,029   adding 'tests/testdata/test_reassign_panel0.bed'
2021-08-24T11:15:42,030   adding 'tests/testdata/test_reassign_panel1.bed'
2021-08-24T11:15:42,038   adding 'tests/testdata/test_reassign_small_0.bam'
2021-08-24T11:15:42,041   adding 'tests/testdata/test_reassign_small_0.bam.bai'
2021-08-24T11:15:42,049   adding 'tests/testdata/test_reassign_small_1.bam'
2021-08-24T11:15:42,053   adding 'tests/testdata/test_reassign_small_1.bam.bai'
2021-08-24T11:15:42,054   adding 'tests/testdata/test_reassignment_coverages.tsv'
2021-08-24T11:15:42,056   adding 'tests/testdata/test_reassignment_p1_bamfiles.txt'
2021-08-24T11:15:42,057   adding 'tests/testdata/test_reassignment_p2_bamfiles.txt'
2021-08-24T11:15:42,060   adding 'tests/testdata/test_reassignment_ref.fa'
2021-08-24T11:15:42,061   adding 'tests/testdata/test_reassignment_ref.fa.fai'
2021-08-24T11:15:42,062   adding 'tests/testdata/test_reassignment_union.bed'
2021-08-24T11:15:42,064   adding 'tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y='
2021-08-24T11:15:42,066   adding 'tests/testdata/covs/test_reassign_small_0.rtbed'
2021-08-24T11:15:42,067   adding 'tests/testdata/covs/test_reassign_small_1.rtbed'
2021-08-24T11:15:42,069   adding 'tests/testdata/logs/merge_coverages.log'
2021-08-24T11:15:42,071   adding 'tests/testdata/logs/coverages/test_reassign_small_0.log'
2021-08-24T11:15:42,072   adding 'tests/testdata/logs/coverages/test_reassign_small_1.log'
2021-08-24T11:15:42,074   adding 'tests/testdata/sge_log/bash-3828326.log'
2021-08-24T11:15:42,075   adding 'tests/testdata/sge_log/bash-3828327.log'
2021-08-24T11:15:42,076   adding 'tests/testdata/sge_log/bash-3828329.log'
2021-08-24T11:15:42,077   adding 'clearCNV-0.303.dist-info/LICENSE'
2021-08-24T11:15:42,079   adding 'clearCNV-0.303.dist-info/METADATA'
2021-08-24T11:15:42,080   adding 'clearCNV-0.303.dist-info/WHEEL'
2021-08-24T11:15:42,081   adding 'clearCNV-0.303.dist-info/entry_points.txt'
2021-08-24T11:15:42,081   adding 'clearCNV-0.303.dist-info/top_level.txt'
2021-08-24T11:15:42,083   adding 'clearCNV-0.303.dist-info/RECORD'
2021-08-24T11:15:42,117   removing build/bdist.linux-armv7l/wheel
2021-08-24T11:15:42,229   Building wheel for clearcnv (setup.py): finished with status 'done'
2021-08-24T11:15:42,250   Created wheel for clearcnv: filename=clearCNV-0.303-py2.py3-none-any.whl size=1818875 sha256=d7403657554d9d98e0cd60f6fdafe886551a3dfb6d04d99057bfb47166164b7f
2021-08-24T11:15:42,251   Stored in directory: /tmp/pip-ephem-wheel-cache-wx8yy_6v/wheels/bd/fd/d2/937c4841053990f8519a8d08a648fe9df276138e0ea45ca7f7
2021-08-24T11:15:42,265 Successfully built clearcnv
2021-08-24T11:15:42,337 Removed build tracker: '/tmp/pip-req-tracker-eiq6dj_9'