2021-08-24T18:31:24,403 Created temporary directory: /tmp/pip-ephem-wheel-cache-wt96gkre 2021-08-24T18:31:24,406 Created temporary directory: /tmp/pip-req-tracker-lw0w2k4a 2021-08-24T18:31:24,407 Initialized build tracking at /tmp/pip-req-tracker-lw0w2k4a 2021-08-24T18:31:24,407 Created build tracker: /tmp/pip-req-tracker-lw0w2k4a 2021-08-24T18:31:24,407 Entered build tracker: /tmp/pip-req-tracker-lw0w2k4a 2021-08-24T18:31:24,408 Created temporary directory: /tmp/pip-wheel-hi7rk4r5 2021-08-24T18:31:24,444 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-08-24T18:31:24,447 2 location(s) to search for versions of bats-tda: 2021-08-24T18:31:24,447 * https://pypi.org/simple/bats-tda/ 2021-08-24T18:31:24,447 * https://www.piwheels.org/simple/bats-tda/ 2021-08-24T18:31:24,447 Fetching project page and analyzing links: https://pypi.org/simple/bats-tda/ 2021-08-24T18:31:24,448 Getting page https://pypi.org/simple/bats-tda/ 2021-08-24T18:31:24,449 Found index url https://pypi.org/simple 2021-08-24T18:31:24,543 Found link https://files.pythonhosted.org/packages/bc/29/a80c4be659d05c22f8dae2e0a3eab912bdc2b60086e64fdffadc4f9cf3b9/bats-tda-0.0.0.tar.gz#sha256=79d812ab4c8bb9dfdca9d7b132dcf017d4fa458645cc214a8a9dc71dae4d97db (from https://pypi.org/simple/bats-tda/) (requires-python:>=3.7), version: 0.0.0 2021-08-24T18:31:24,544 Found link https://files.pythonhosted.org/packages/71/09/37563a06919fc5ad8e8c7ffb3061396b3a6e38a8e0652eb13663a08ebf1c/bats-tda-0.0.1.tar.gz#sha256=05fa97307bbc5f4c6cd4c6198e9f02f655b2c7de5aa8f4e0379600fc0d38c1d1 (from https://pypi.org/simple/bats-tda/) (requires-python:>=3.7), version: 0.0.1 2021-08-24T18:31:24,545 Found link https://files.pythonhosted.org/packages/c5/64/e37113985c40c35b8f152f6be65571feba7daf85ea6ac5cc7a785ffb41f8/bats-tda-0.1.0.tar.gz#sha256=d9d8c6fc2ddef4f86ce6e22526eec5311b1c3a85a7a8e4a5519fabb1b4251e62 (from https://pypi.org/simple/bats-tda/) (requires-python:>=3.7), version: 0.1.0 2021-08-24T18:31:24,545 Fetching project page and analyzing links: https://www.piwheels.org/simple/bats-tda/ 2021-08-24T18:31:24,545 Getting page https://www.piwheels.org/simple/bats-tda/ 2021-08-24T18:31:24,546 Found index url https://www.piwheels.org/simple 2021-08-24T18:31:24,661 Skipping link: not a file: https://www.piwheels.org/simple/bats-tda/ 2021-08-24T18:31:24,661 Skipping link: not a file: https://pypi.org/simple/bats-tda/ 2021-08-24T18:31:24,681 Given no hashes to check 1 links for project 'bats-tda': discarding no candidates 2021-08-24T18:31:24,700 Collecting bats-tda==0.1.0 2021-08-24T18:31:24,702 Created temporary directory: /tmp/pip-unpack-eq4u9d6h 2021-08-24T18:31:24,752 Downloading bats-tda-0.1.0.tar.gz (279 kB) 2021-08-24T18:31:25,206 Added bats-tda==0.1.0 from https://files.pythonhosted.org/packages/c5/64/e37113985c40c35b8f152f6be65571feba7daf85ea6ac5cc7a785ffb41f8/bats-tda-0.1.0.tar.gz#sha256=d9d8c6fc2ddef4f86ce6e22526eec5311b1c3a85a7a8e4a5519fabb1b4251e62 to build tracker '/tmp/pip-req-tracker-lw0w2k4a' 2021-08-24T18:31:25,207 Running setup.py (path:/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/setup.py) egg_info for package bats-tda 2021-08-24T18:31:25,207 Created temporary directory: /tmp/pip-pip-egg-info-4crrfqn1 2021-08-24T18:31:25,208 Running command python setup.py egg_info 2021-08-24T18:31:26,177 default compiler: unix 2021-08-24T18:31:26,178 running egg_info 2021-08-24T18:31:26,179 creating /tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info 2021-08-24T18:31:26,180 writing /tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info/PKG-INFO 2021-08-24T18:31:26,183 writing dependency_links to /tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info/dependency_links.txt 2021-08-24T18:31:26,185 writing requirements to /tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info/requires.txt 2021-08-24T18:31:26,186 writing top-level names to /tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info/top_level.txt 2021-08-24T18:31:26,187 writing manifest file '/tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info/SOURCES.txt' 2021-08-24T18:31:26,342 reading manifest file '/tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info/SOURCES.txt' 2021-08-24T18:31:26,344 reading manifest template 'MANIFEST.in' 2021-08-24T18:31:26,422 warning: no previously-included files matching '*.cpp' found under directory 'BATS' 2021-08-24T18:31:26,445 adding license file 'LICENSE' 2021-08-24T18:31:26,453 writing manifest file '/tmp/pip-pip-egg-info-4crrfqn1/bats_tda.egg-info/SOURCES.txt' 2021-08-24T18:31:26,528 Source in /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946 has version 0.1.0, which satisfies requirement bats-tda==0.1.0 from https://files.pythonhosted.org/packages/c5/64/e37113985c40c35b8f152f6be65571feba7daf85ea6ac5cc7a785ffb41f8/bats-tda-0.1.0.tar.gz#sha256=d9d8c6fc2ddef4f86ce6e22526eec5311b1c3a85a7a8e4a5519fabb1b4251e62 2021-08-24T18:31:26,529 Removed bats-tda==0.1.0 from https://files.pythonhosted.org/packages/c5/64/e37113985c40c35b8f152f6be65571feba7daf85ea6ac5cc7a785ffb41f8/bats-tda-0.1.0.tar.gz#sha256=d9d8c6fc2ddef4f86ce6e22526eec5311b1c3a85a7a8e4a5519fabb1b4251e62 from build tracker '/tmp/pip-req-tracker-lw0w2k4a' 2021-08-24T18:31:26,535 Created temporary directory: /tmp/pip-unpack-cvwndgrh 2021-08-24T18:31:26,536 Building wheels for collected packages: bats-tda 2021-08-24T18:31:26,541 Created temporary directory: /tmp/pip-wheel-ho4yx6xd 2021-08-24T18:31:26,541 Building wheel for bats-tda (setup.py): started 2021-08-24T18:31:26,542 Destination directory: /tmp/pip-wheel-ho4yx6xd 2021-08-24T18:31:26,542 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ho4yx6xd 2021-08-24T18:31:27,350 default compiler: unix 2021-08-24T18:31:27,506 running bdist_wheel 2021-08-24T18:31:27,510 running build 2021-08-24T18:31:27,510 running build_py 2021-08-24T18:31:27,650 creating build 2021-08-24T18:31:27,651 creating build/lib.linux-armv7l-3.9 2021-08-24T18:31:27,651 creating build/lib.linux-armv7l-3.9/bats 2021-08-24T18:31:27,652 copying bats/__init__.py -> build/lib.linux-armv7l-3.9/bats 2021-08-24T18:31:27,654 copying bats/_version.py -> build/lib.linux-armv7l-3.9/bats 2021-08-24T18:31:27,656 creating build/lib.linux-armv7l-3.9/bats/visualization 2021-08-24T18:31:27,657 copying bats/visualization/visualization.py -> build/lib.linux-armv7l-3.9/bats/visualization 2021-08-24T18:31:27,659 copying bats/visualization/__init__.py -> build/lib.linux-armv7l-3.9/bats/visualization 2021-08-24T18:31:27,661 copying bats/visualization/plotly.py -> build/lib.linux-armv7l-3.9/bats/visualization 2021-08-24T18:31:27,664 running build_ext 2021-08-24T18:31:27,669 building 'bats.linalg' extension 2021-08-24T18:31:27,670 creating build/temp.linux-armv7l-3.9 2021-08-24T18:31:27,670 creating build/temp.linux-armv7l-3.9/bats 2021-08-24T18:31:27,671 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/ -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/ -I/usr/include/python3.9 -c bats/linalg.cpp -o build/temp.linux-armv7l-3.9/bats/linalg.o -std=c++17 -fopenmp 2021-08-24T18:31:33,345 In file included from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:16, 2021-08-24T18:31:33,345 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:31:33,346 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:31:33,346 from bats/linalg.cpp:3: 2021-08-24T18:31:33,346 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h: In function ‘pybind11::detail::internals& pybind11::detail::get_internals()’: 2021-08-24T18:31:33,346 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h:276:28: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 2021-08-24T18:31:33,346 276 | PyEval_InitThreads(); 2021-08-24T18:31:33,347 | ^ 2021-08-24T18:31:33,347 In file included from /usr/include/python3.9/Python.h:145, 2021-08-24T18:31:33,347 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/common.h:112, 2021-08-24T18:31:33,347 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pytypes.h:12, 2021-08-24T18:31:33,347 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:13, 2021-08-24T18:31:33,347 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:31:33,347 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:31:33,348 from bats/linalg.cpp:3: 2021-08-24T18:31:33,348 /usr/include/python3.9/ceval.h:130:37: note: declared here 2021-08-24T18:31:33,348 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); 2021-08-24T18:31:33,348 | ^~~~~~~~~~~~~~~~~~ 2021-08-24T18:32:34,907 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/bats/linalg.o -o build/lib.linux-armv7l-3.9/bats/linalg.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-08-24T18:32:35,791 building 'bats.linalg_f2' extension 2021-08-24T18:32:35,791 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/ -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/ -I/usr/include/python3.9 -c bats/linalg_f2.cpp -o build/temp.linux-armv7l-3.9/bats/linalg_f2.o -std=c++17 -fopenmp 2021-08-24T18:32:41,249 In file included from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:16, 2021-08-24T18:32:41,250 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:32:41,250 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:32:41,250 from bats/linalg_f2.cpp:3: 2021-08-24T18:32:41,250 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h: In function ‘pybind11::detail::internals& pybind11::detail::get_internals()’: 2021-08-24T18:32:41,250 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h:276:28: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 2021-08-24T18:32:41,250 276 | PyEval_InitThreads(); 2021-08-24T18:32:41,250 | ^ 2021-08-24T18:32:41,251 In file included from /usr/include/python3.9/Python.h:145, 2021-08-24T18:32:41,251 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/common.h:112, 2021-08-24T18:32:41,252 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pytypes.h:12, 2021-08-24T18:32:41,252 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:13, 2021-08-24T18:32:41,252 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:32:41,252 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:32:41,252 from bats/linalg_f2.cpp:3: 2021-08-24T18:32:41,252 /usr/include/python3.9/ceval.h:130:37: note: declared here 2021-08-24T18:32:41,252 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); 2021-08-24T18:32:41,252 | ^~~~~~~~~~~~~~~~~~ 2021-08-24T18:32:50,616 In file included from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg.hpp:3, 2021-08-24T18:32:50,616 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/bats.hpp:11, 2021-08-24T18:32:50,616 from bats/pybats.hpp:9, 2021-08-24T18:32:50,616 from bats/linalg_f2.cpp:1: 2021-08-24T18:32:50,617 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp: In instantiation of ‘void ColumnMatrix::insert_columns(const std::vector&, std::vector<_RealType>&) [with TC = SparseVector, unsigned int>]’: 2021-08-24T18:32:50,617 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/homology/basis.hpp:423:24: required from ‘void bats::ReducedChainComplex::update_basis_general(const Information_type&, Args ...) [with Information_type = bats::Update_info >; Args = {}; MT = ColumnMatrix, unsigned int> >]’ 2021-08-24T18:32:50,617 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/persistence/filtered_basis.hpp:152:26: required from ‘void bats::ReducedFilteredChainComplex::update_filtration_general(const Information_type&, Args ...) [with Information_type = bats::Update_info >; Args = {}; T = double; MT = ColumnMatrix, unsigned int> >]’ 2021-08-24T18:32:50,617 bats/linalg_f2.cpp:271:2: required from here 2021-08-24T18:32:50,617 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:207:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:32:50,617 207 | while (oldi < col.size() && newi < insert_col.size()) { 2021-08-24T18:32:50,617 | ~~~~~^~~~~~~~~~~~ 2021-08-24T18:32:50,618 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:207:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:32:50,618 207 | while (oldi < col.size() && newi < insert_col.size()) { 2021-08-24T18:32:50,618 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:32:50,619 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:221:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:32:50,619 221 | while (oldi < col.size()) { 2021-08-24T18:32:50,619 | ~~~~~^~~~~~~~~~~~ 2021-08-24T18:32:50,620 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:227:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:32:50,620 227 | while (newi < insert_col.size()) { 2021-08-24T18:32:50,620 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:33:55,405 In file included from /usr/include/c++/10/vector:72, 2021-08-24T18:33:55,405 from bats/pybats.hpp:6, 2021-08-24T18:33:55,405 from bats/linalg_f2.cpp:1: 2021-08-24T18:33:55,405 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {bats::PersistencePair}; _Tp = bats::PersistencePair; _Alloc = std::allocator >]’: 2021-08-24T18:33:55,405 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2021-08-24T18:33:55,406 426 | vector<_Tp, _Alloc>:: 2021-08-24T18:33:55,406 | ^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:33:55,442 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bats::PersistencePair}; _Tp = bats::PersistencePair; _Alloc = std::allocator >]’: 2021-08-24T18:33:55,442 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2021-08-24T18:33:55,442 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-08-24T18:33:55,442 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-08-24T18:34:28,167 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-08-24T18:34:28,167 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-08-24T18:34:28,167 426 | vector<_Tp, _Alloc>:: 2021-08-24T18:34:28,167 | ^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:34:28,242 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’: 2021-08-24T18:34:28,242 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-08-24T18:34:28,242 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-08-24T18:34:28,243 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-08-24T18:34:55,990 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/bats/linalg_f2.o -o build/lib.linux-armv7l-3.9/bats/linalg_f2.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-08-24T18:34:57,513 building 'bats.linalg_f3' extension 2021-08-24T18:34:57,513 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/ -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/ -I/usr/include/python3.9 -c bats/linalg_f3.cpp -o build/temp.linux-armv7l-3.9/bats/linalg_f3.o -std=c++17 -fopenmp 2021-08-24T18:35:03,014 In file included from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:16, 2021-08-24T18:35:03,014 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:35:03,014 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:35:03,015 from bats/linalg_f3.cpp:3: 2021-08-24T18:35:03,015 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h: In function ‘pybind11::detail::internals& pybind11::detail::get_internals()’: 2021-08-24T18:35:03,015 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h:276:28: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 2021-08-24T18:35:03,015 276 | PyEval_InitThreads(); 2021-08-24T18:35:03,015 | ^ 2021-08-24T18:35:03,015 In file included from /usr/include/python3.9/Python.h:145, 2021-08-24T18:35:03,016 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/common.h:112, 2021-08-24T18:35:03,016 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pytypes.h:12, 2021-08-24T18:35:03,016 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:13, 2021-08-24T18:35:03,016 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:35:03,016 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:35:03,016 from bats/linalg_f3.cpp:3: 2021-08-24T18:35:03,016 /usr/include/python3.9/ceval.h:130:37: note: declared here 2021-08-24T18:35:03,017 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); 2021-08-24T18:35:03,017 | ^~~~~~~~~~~~~~~~~~ 2021-08-24T18:35:12,389 In file included from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg.hpp:3, 2021-08-24T18:35:12,389 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/bats.hpp:11, 2021-08-24T18:35:12,389 from bats/pybats.hpp:9, 2021-08-24T18:35:12,389 from bats/linalg_f3.cpp:1: 2021-08-24T18:35:12,390 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp: In instantiation of ‘void ColumnMatrix::insert_columns(const std::vector&, std::vector<_RealType>&) [with TC = SparseVector, unsigned int>]’: 2021-08-24T18:35:12,390 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/homology/basis.hpp:423:24: required from ‘void bats::ReducedChainComplex::update_basis_general(const Information_type&, Args ...) [with Information_type = bats::Update_info >; Args = {}; MT = ColumnMatrix, unsigned int> >]’ 2021-08-24T18:35:12,390 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/persistence/filtered_basis.hpp:152:26: required from ‘void bats::ReducedFilteredChainComplex::update_filtration_general(const Information_type&, Args ...) [with Information_type = bats::Update_info >; Args = {}; T = double; MT = ColumnMatrix, unsigned int> >]’ 2021-08-24T18:35:12,390 bats/linalg_f3.cpp:272:5: required from here 2021-08-24T18:35:12,390 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:207:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:35:12,390 207 | while (oldi < col.size() && newi < insert_col.size()) { 2021-08-24T18:35:12,391 | ~~~~~^~~~~~~~~~~~ 2021-08-24T18:35:12,391 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:207:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:35:12,391 207 | while (oldi < col.size() && newi < insert_col.size()) { 2021-08-24T18:35:12,391 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:35:12,391 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:221:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:35:12,392 221 | while (oldi < col.size()) { 2021-08-24T18:35:12,392 | ~~~~~^~~~~~~~~~~~ 2021-08-24T18:35:12,392 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/linalg/col_matrix.hpp:227:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int>, std::allocator, unsigned int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-08-24T18:35:12,392 227 | while (newi < insert_col.size()) { 2021-08-24T18:35:12,392 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:36:17,402 In file included from /usr/include/c++/10/vector:72, 2021-08-24T18:36:17,403 from bats/pybats.hpp:6, 2021-08-24T18:36:17,403 from bats/linalg_f3.cpp:1: 2021-08-24T18:36:17,403 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {bats::PersistencePair}; _Tp = bats::PersistencePair; _Alloc = std::allocator >]’: 2021-08-24T18:36:17,403 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2021-08-24T18:36:17,403 426 | vector<_Tp, _Alloc>:: 2021-08-24T18:36:17,403 | ^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:36:17,439 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bats::PersistencePair}; _Tp = bats::PersistencePair; _Alloc = std::allocator >]’: 2021-08-24T18:36:17,440 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2021-08-24T18:36:17,440 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-08-24T18:36:17,440 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-08-24T18:36:50,058 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-08-24T18:36:50,059 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-08-24T18:36:50,059 426 | vector<_Tp, _Alloc>:: 2021-08-24T18:36:50,059 | ^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:36:50,133 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’: 2021-08-24T18:36:50,133 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-08-24T18:36:50,134 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-08-24T18:36:50,134 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-08-24T18:37:18,742 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/bats/linalg_f3.o -o build/lib.linux-armv7l-3.9/bats/linalg_f3.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-08-24T18:37:20,277 building 'bats.linalg_auto' extension 2021-08-24T18:37:20,278 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/BATS_include/include/ -I/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/ -I/usr/include/python3.9 -c bats/linalg_auto.cpp -o build/temp.linux-armv7l-3.9/bats/linalg_auto.o -std=c++17 -fopenmp 2021-08-24T18:37:25,697 In file included from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:16, 2021-08-24T18:37:25,697 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:37:25,697 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:37:25,698 from bats/linalg_auto.cpp:3: 2021-08-24T18:37:25,698 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h: In function ‘pybind11::detail::internals& pybind11::detail::get_internals()’: 2021-08-24T18:37:25,698 /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/internals.h:276:28: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 2021-08-24T18:37:25,698 276 | PyEval_InitThreads(); 2021-08-24T18:37:25,698 | ^ 2021-08-24T18:37:25,698 In file included from /usr/include/python3.9/Python.h:145, 2021-08-24T18:37:25,699 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/detail/common.h:112, 2021-08-24T18:37:25,699 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pytypes.h:12, 2021-08-24T18:37:25,699 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/cast.h:13, 2021-08-24T18:37:25,699 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/attr.h:13, 2021-08-24T18:37:25,699 from /tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/pybind11/include/pybind11/pybind11.h:44, 2021-08-24T18:37:25,699 from bats/linalg_auto.cpp:3: 2021-08-24T18:37:25,699 /usr/include/python3.9/ceval.h:130:37: note: declared here 2021-08-24T18:37:25,700 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); 2021-08-24T18:37:25,700 | ^~~~~~~~~~~~~~~~~~ 2021-08-24T18:39:39,808 In file included from /usr/include/c++/10/vector:72, 2021-08-24T18:39:39,808 from bats/pybats.hpp:6, 2021-08-24T18:39:39,809 from bats/linalg_auto.cpp:1: 2021-08-24T18:39:39,809 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-08-24T18:39:39,809 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-08-24T18:39:39,809 426 | vector<_Tp, _Alloc>:: 2021-08-24T18:39:39,809 | ^~~~~~~~~~~~~~~~~~~ 2021-08-24T18:39:39,809 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-08-24T18:39:39,879 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’: 2021-08-24T18:39:39,880 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-08-24T18:39:39,880 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-08-24T18:39:39,880 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-08-24T18:39:41,541 virtual memory exhausted: Cannot allocate memory 2021-08-24T18:39:41,781 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-08-24T18:39:41,861 Building wheel for bats-tda (setup.py): finished with status 'error' 2021-08-24T18:39:41,862 ERROR: Failed building wheel for bats-tda 2021-08-24T18:39:41,863 Running setup.py clean for bats-tda 2021-08-24T18:39:41,863 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hi7rk4r5/bats-tda_4e7083e6bd1440dd96f42dfe01150946/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-08-24T18:39:42,768 default compiler: unix 2021-08-24T18:39:42,908 running clean 2021-08-24T18:39:42,911 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-08-24T18:39:42,947 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-08-24T18:39:42,978 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-08-24T18:39:42,978 'build/scripts-3.9' does not exist -- can't clean it 2021-08-24T18:39:42,979 removing 'build' 2021-08-24T18:39:43,046 Failed to build bats-tda 2021-08-24T18:39:43,047 ERROR: Failed to build one or more wheels 2021-08-24T18:39:43,047 Exception information: 2021-08-24T18:39:43,047 Traceback (most recent call last): 2021-08-24T18:39:43,047 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-08-24T18:39:43,047 status = self.run(options, args) 2021-08-24T18:39:43,047 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-08-24T18:39:43,047 return func(self, options, args) 2021-08-24T18:39:43,047 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-08-24T18:39:43,047 raise CommandError( 2021-08-24T18:39:43,047 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-08-24T18:39:43,051 Removed build tracker: '/tmp/pip-req-tracker-lw0w2k4a'