2021-08-24T20:47:39,883 Created temporary directory: /tmp/pip-ephem-wheel-cache-2lbkr7hg
2021-08-24T20:47:39,886 Created temporary directory: /tmp/pip-req-tracker-tgewd7pt
2021-08-24T20:47:39,887 Initialized build tracking at /tmp/pip-req-tracker-tgewd7pt
2021-08-24T20:47:39,887 Created build tracker: /tmp/pip-req-tracker-tgewd7pt
2021-08-24T20:47:39,887 Entered build tracker: /tmp/pip-req-tracker-tgewd7pt
2021-08-24T20:47:39,888 Created temporary directory: /tmp/pip-wheel-e94n8opn
2021-08-24T20:47:39,922 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-08-24T20:47:39,925 2 location(s) to search for versions of ont-bonito-cuda111:
2021-08-24T20:47:39,925 * https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:39,925 * https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:39,926 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:39,926 Getting page https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:39,928 Found index url https://pypi.org/simple
2021-08-24T20:47:40,018   Found link https://files.pythonhosted.org/packages/4b/e9/326d358ab1d32037c760b9f7b1010edf4eb9de07b68af8e0fdd8bdc5c0c7/ont-bonito-cuda111-0.4.0a0.tar.gz#sha256=ed1d55117b8295e2bce313b195623d2a3ae111242e7e74dd0daaabfc348eb02e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a0
2021-08-24T20:47:40,018   Found link https://files.pythonhosted.org/packages/a1/9f/19c6571eb24457fa6ed8cf7699f2586a4b376cf875c58f0c26ced182f6a1/ont-bonito-cuda111-0.4.0a1.tar.gz#sha256=7d920614f050aba11b20ccfa082e290c24b79c963445c64a6f5691cb98004e4e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a1
2021-08-24T20:47:40,018   Found link https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a2
2021-08-24T20:47:40,019 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:40,019 Getting page https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:40,020 Found index url https://www.piwheels.org/simple
2021-08-24T20:47:40,138 Skipping link: not a file: https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:40,138 Skipping link: not a file: https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T20:47:40,157 Given no hashes to check 1 links for project 'ont-bonito-cuda111': discarding no candidates
2021-08-24T20:47:40,176 Collecting ont-bonito-cuda111==0.4.0a2
2021-08-24T20:47:40,178   Created temporary directory: /tmp/pip-unpack-tlhqi_lp
2021-08-24T20:47:40,220   Downloading ont-bonito-cuda111-0.4.0a2.tar.gz (43 kB)
2021-08-24T20:47:40,341   Added ont-bonito-cuda111==0.4.0a2 from https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d to build tracker '/tmp/pip-req-tracker-tgewd7pt'
2021-08-24T20:47:40,342     Running setup.py (path:/tmp/pip-wheel-e94n8opn/ont-bonito-cuda111_74d4ab31a3854c8e91406adcffa87d32/setup.py) egg_info for package ont-bonito-cuda111
2021-08-24T20:47:40,343     Created temporary directory: /tmp/pip-pip-egg-info-i2ofbx4v
2021-08-24T20:47:40,343     Running command python setup.py egg_info
2021-08-24T20:47:41,234     Building with CUDA 11.1
2021-08-24T20:47:41,235     running egg_info
2021-08-24T20:47:41,237     creating /tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info
2021-08-24T20:47:41,238     writing /tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/PKG-INFO
2021-08-24T20:47:41,241     writing dependency_links to /tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/dependency_links.txt
2021-08-24T20:47:41,242     writing entry points to /tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/entry_points.txt
2021-08-24T20:47:41,244     writing requirements to /tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/requires.txt
2021-08-24T20:47:41,245     writing top-level names to /tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/top_level.txt
2021-08-24T20:47:41,247     writing manifest file '/tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T20:47:41,422     reading manifest file '/tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T20:47:41,424     reading manifest template 'MANIFEST.in'
2021-08-24T20:47:41,429     adding license file 'LICENCE.txt'
2021-08-24T20:47:41,432     writing manifest file '/tmp/pip-pip-egg-info-i2ofbx4v/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T20:47:41,504   Source in /tmp/pip-wheel-e94n8opn/ont-bonito-cuda111_74d4ab31a3854c8e91406adcffa87d32 has version 0.4.0a2, which satisfies requirement ont-bonito-cuda111==0.4.0a2 from https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d
2021-08-24T20:47:41,505   Removed ont-bonito-cuda111==0.4.0a2 from https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d from build tracker '/tmp/pip-req-tracker-tgewd7pt'
2021-08-24T20:47:41,510 Created temporary directory: /tmp/pip-unpack-6d5hi5wh
2021-08-24T20:47:41,511 Building wheels for collected packages: ont-bonito-cuda111
2021-08-24T20:47:41,516   Created temporary directory: /tmp/pip-wheel-uvyef32o
2021-08-24T20:47:41,517   Building wheel for ont-bonito-cuda111 (setup.py): started
2021-08-24T20:47:41,517   Destination directory: /tmp/pip-wheel-uvyef32o
2021-08-24T20:47:41,517   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e94n8opn/ont-bonito-cuda111_74d4ab31a3854c8e91406adcffa87d32/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e94n8opn/ont-bonito-cuda111_74d4ab31a3854c8e91406adcffa87d32/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-uvyef32o
2021-08-24T20:47:42,185   Building with CUDA 11.1
2021-08-24T20:47:42,409   running bdist_wheel
2021-08-24T20:47:42,585   running build
2021-08-24T20:47:42,585   running build_py
2021-08-24T20:47:42,727   creating build
2021-08-24T20:47:42,728   creating build/lib
2021-08-24T20:47:42,728   creating build/lib/bonito
2021-08-24T20:47:42,730   copying bonito/training.py -> build/lib/bonito
2021-08-24T20:47:42,732   copying bonito/util.py -> build/lib/bonito
2021-08-24T20:47:42,734   copying bonito/io.py -> build/lib/bonito
2021-08-24T20:47:42,737   copying bonito/fast5.py -> build/lib/bonito
2021-08-24T20:47:42,739   copying bonito/nn.py -> build/lib/bonito
2021-08-24T20:47:42,741   copying bonito/aligner.py -> build/lib/bonito
2021-08-24T20:47:42,743   copying bonito/__init__.py -> build/lib/bonito
2021-08-24T20:47:42,745   copying bonito/multiprocessing.py -> build/lib/bonito
2021-08-24T20:47:42,748   creating build/lib/bonito/cli
2021-08-24T20:47:42,749   copying bonito/cli/export.py -> build/lib/bonito/cli
2021-08-24T20:47:42,751   copying bonito/cli/evaluate.py -> build/lib/bonito/cli
2021-08-24T20:47:42,753   copying bonito/cli/convert.py -> build/lib/bonito/cli
2021-08-24T20:47:42,756   copying bonito/cli/train.py -> build/lib/bonito/cli
2021-08-24T20:47:42,759   copying bonito/cli/basecaller.py -> build/lib/bonito/cli
2021-08-24T20:47:42,761   copying bonito/cli/download.py -> build/lib/bonito/cli
2021-08-24T20:47:42,763   copying bonito/cli/__init__.py -> build/lib/bonito/cli
2021-08-24T20:47:42,765   copying bonito/cli/duplex.py -> build/lib/bonito/cli
2021-08-24T20:47:42,768   copying bonito/cli/view.py -> build/lib/bonito/cli
2021-08-24T20:47:42,771   creating build/lib/bonito/ctc
2021-08-24T20:47:42,772   copying bonito/ctc/basecall.py -> build/lib/bonito/ctc
2021-08-24T20:47:42,774   copying bonito/ctc/model.py -> build/lib/bonito/ctc
2021-08-24T20:47:42,777   copying bonito/ctc/__init__.py -> build/lib/bonito/ctc
2021-08-24T20:47:42,780   creating build/lib/bonito/crf
2021-08-24T20:47:42,780   copying bonito/crf/basecall.py -> build/lib/bonito/crf
2021-08-24T20:47:42,783   copying bonito/crf/model.py -> build/lib/bonito/crf
2021-08-24T20:47:42,785   copying bonito/crf/__init__.py -> build/lib/bonito/crf
2021-08-24T20:47:42,787   running egg_info
2021-08-24T20:47:42,803   writing ont_bonito_cuda111.egg-info/PKG-INFO
2021-08-24T20:47:42,805   writing dependency_links to ont_bonito_cuda111.egg-info/dependency_links.txt
2021-08-24T20:47:42,807   writing entry points to ont_bonito_cuda111.egg-info/entry_points.txt
2021-08-24T20:47:42,808   writing requirements to ont_bonito_cuda111.egg-info/requires.txt
2021-08-24T20:47:42,810   writing top-level names to ont_bonito_cuda111.egg-info/top_level.txt
2021-08-24T20:47:42,833   reading manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T20:47:42,836   reading manifest template 'MANIFEST.in'
2021-08-24T20:47:42,840   adding license file 'LICENCE.txt'
2021-08-24T20:47:42,844   writing manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T20:47:42,847   creating build/lib/bonito/data
2021-08-24T20:47:42,848   copying bonito/data/README.md -> build/lib/bonito/data
2021-08-24T20:47:42,851   creating build/lib/bonito/models
2021-08-24T20:47:42,852   copying bonito/models/README.md -> build/lib/bonito/models
2021-08-24T20:47:42,854   creating build/lib/bonito/models/configs
2021-08-24T20:47:42,855   copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs
2021-08-24T20:47:42,858   copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs
2021-08-24T20:47:42,860   copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs
2021-08-24T20:47:42,869   installing to build/bdist.linux-armv7l/wheel
2021-08-24T20:47:42,869   running install
2021-08-24T20:47:42,870   running install_lib
2021-08-24T20:47:42,875   creating build/bdist.linux-armv7l
2021-08-24T20:47:42,875   creating build/bdist.linux-armv7l/wheel
2021-08-24T20:47:42,878   creating build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,880   creating build/bdist.linux-armv7l/wheel/bonito/models
2021-08-24T20:47:42,882   creating build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T20:47:42,883   copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T20:47:42,885   copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T20:47:42,888   copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T20:47:42,890   copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models
2021-08-24T20:47:42,892   copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,894   copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,898   creating build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,899   copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,901   copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,903   copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,906   copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,909   copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,911   copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,913   copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,915   copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,918   copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T20:47:42,920   copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,923   copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,927   creating build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T20:47:42,928   copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T20:47:42,930   copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T20:47:42,933   copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T20:47:42,936   creating build/bdist.linux-armv7l/wheel/bonito/data
2021-08-24T20:47:42,936   copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data
2021-08-24T20:47:42,939   copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,941   copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,944   copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,946   copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T20:47:42,949   creating build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T20:47:42,950   copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T20:47:42,953   copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T20:47:42,956   copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T20:47:42,958   running install_egg_info
2021-08-24T20:47:42,969   Copying ont_bonito_cuda111.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.4.0a2-py3.9.egg-info
2021-08-24T20:47:42,984   running install_scripts
2021-08-24T20:47:43,054   error: [Errno 2] No such file or directory: 'bonito'
2021-08-24T20:47:43,145   Building wheel for ont-bonito-cuda111 (setup.py): finished with status 'error'
2021-08-24T20:47:43,145   ERROR: Failed building wheel for ont-bonito-cuda111
2021-08-24T20:47:43,146   Running setup.py clean for ont-bonito-cuda111
2021-08-24T20:47:43,146   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e94n8opn/ont-bonito-cuda111_74d4ab31a3854c8e91406adcffa87d32/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e94n8opn/ont-bonito-cuda111_74d4ab31a3854c8e91406adcffa87d32/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-08-24T20:47:43,804   Building with CUDA 11.1
2021-08-24T20:47:43,993   running clean
2021-08-24T20:47:43,996   removing 'build/lib' (and everything under it)
2021-08-24T20:47:44,008   removing 'build/bdist.linux-armv7l' (and everything under it)
2021-08-24T20:47:44,029   'build/scripts-3.9' does not exist -- can't clean it
2021-08-24T20:47:44,029   removing 'build'
2021-08-24T20:47:44,087 Failed to build ont-bonito-cuda111
2021-08-24T20:47:44,087 ERROR: Failed to build one or more wheels
2021-08-24T20:47:44,088 Exception information:
2021-08-24T20:47:44,088 Traceback (most recent call last):
2021-08-24T20:47:44,088   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-08-24T20:47:44,088     status = self.run(options, args)
2021-08-24T20:47:44,088   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-08-24T20:47:44,088     return func(self, options, args)
2021-08-24T20:47:44,088   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-08-24T20:47:44,088     raise CommandError(
2021-08-24T20:47:44,088 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-08-24T20:47:44,091 Removed build tracker: '/tmp/pip-req-tracker-tgewd7pt'