2021-08-24T21:49:40,198 Created temporary directory: /tmp/pip-ephem-wheel-cache-m3ygn5ch
2021-08-24T21:49:40,202 Created temporary directory: /tmp/pip-req-tracker-5la5gnfb
2021-08-24T21:49:40,202 Initialized build tracking at /tmp/pip-req-tracker-5la5gnfb
2021-08-24T21:49:40,202 Created build tracker: /tmp/pip-req-tracker-5la5gnfb
2021-08-24T21:49:40,203 Entered build tracker: /tmp/pip-req-tracker-5la5gnfb
2021-08-24T21:49:40,203 Created temporary directory: /tmp/pip-wheel-479uyb4z
2021-08-24T21:49:40,239 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-08-24T21:49:40,242 2 location(s) to search for versions of ont-bonito-cuda111:
2021-08-24T21:49:40,242 * https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,242 * https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,242 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,243 Getting page https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,244 Found index url https://pypi.org/simple
2021-08-24T21:49:40,336   Found link https://files.pythonhosted.org/packages/4b/e9/326d358ab1d32037c760b9f7b1010edf4eb9de07b68af8e0fdd8bdc5c0c7/ont-bonito-cuda111-0.4.0a0.tar.gz#sha256=ed1d55117b8295e2bce313b195623d2a3ae111242e7e74dd0daaabfc348eb02e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a0
2021-08-24T21:49:40,337   Found link https://files.pythonhosted.org/packages/a1/9f/19c6571eb24457fa6ed8cf7699f2586a4b376cf875c58f0c26ced182f6a1/ont-bonito-cuda111-0.4.0a1.tar.gz#sha256=7d920614f050aba11b20ccfa082e290c24b79c963445c64a6f5691cb98004e4e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a1
2021-08-24T21:49:40,337   Found link https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a2
2021-08-24T21:49:40,337   Found link https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a4
2021-08-24T21:49:40,338   Found link https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0
2021-08-24T21:49:40,338 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,338 Getting page https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,339 Found index url https://www.piwheels.org/simple
2021-08-24T21:49:40,452 Skipping link: not a file: https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,453 Skipping link: not a file: https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:40,473 Given no hashes to check 1 links for project 'ont-bonito-cuda111': discarding no candidates
2021-08-24T21:49:40,491 Collecting ont-bonito-cuda111==0.4.0a4
2021-08-24T21:49:40,493   Created temporary directory: /tmp/pip-unpack-_72me48e
2021-08-24T21:49:40,533   Downloading ont-bonito-cuda111-0.4.0a4.tar.gz (43 kB)
2021-08-24T21:49:40,661   Added ont-bonito-cuda111==0.4.0a4 from https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf to build tracker '/tmp/pip-req-tracker-5la5gnfb'
2021-08-24T21:49:40,662     Running setup.py (path:/tmp/pip-wheel-479uyb4z/ont-bonito-cuda111_3f721309b795483189be88ef3a9e682b/setup.py) egg_info for package ont-bonito-cuda111
2021-08-24T21:49:40,663     Created temporary directory: /tmp/pip-pip-egg-info-4t97u2qp
2021-08-24T21:49:40,663     Running command python setup.py egg_info
2021-08-24T21:49:41,550     Building with CUDA 11.1
2021-08-24T21:49:41,551     running egg_info
2021-08-24T21:49:41,552     creating /tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info
2021-08-24T21:49:41,553     writing /tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/PKG-INFO
2021-08-24T21:49:41,556     writing dependency_links to /tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/dependency_links.txt
2021-08-24T21:49:41,557     writing entry points to /tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/entry_points.txt
2021-08-24T21:49:41,559     writing requirements to /tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/requires.txt
2021-08-24T21:49:41,560     writing top-level names to /tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/top_level.txt
2021-08-24T21:49:41,561     writing manifest file '/tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:41,716     reading manifest file '/tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:41,717     reading manifest template 'MANIFEST.in'
2021-08-24T21:49:41,720     adding license file 'LICENCE.txt'
2021-08-24T21:49:41,723     writing manifest file '/tmp/pip-pip-egg-info-4t97u2qp/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:41,786   Source in /tmp/pip-wheel-479uyb4z/ont-bonito-cuda111_3f721309b795483189be88ef3a9e682b has version 0.4.0a4, which satisfies requirement ont-bonito-cuda111==0.4.0a4 from https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf
2021-08-24T21:49:41,787   Removed ont-bonito-cuda111==0.4.0a4 from https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf from build tracker '/tmp/pip-req-tracker-5la5gnfb'
2021-08-24T21:49:41,792 Created temporary directory: /tmp/pip-unpack-de2m3uc_
2021-08-24T21:49:41,792 Building wheels for collected packages: ont-bonito-cuda111
2021-08-24T21:49:41,797   Created temporary directory: /tmp/pip-wheel-86hfl06r
2021-08-24T21:49:41,797   Building wheel for ont-bonito-cuda111 (setup.py): started
2021-08-24T21:49:41,797   Destination directory: /tmp/pip-wheel-86hfl06r
2021-08-24T21:49:41,797   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-479uyb4z/ont-bonito-cuda111_3f721309b795483189be88ef3a9e682b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-479uyb4z/ont-bonito-cuda111_3f721309b795483189be88ef3a9e682b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-86hfl06r
2021-08-24T21:49:42,454   Building with CUDA 11.1
2021-08-24T21:49:42,674   running bdist_wheel
2021-08-24T21:49:42,843   running build
2021-08-24T21:49:42,843   running build_py
2021-08-24T21:49:42,982   creating build
2021-08-24T21:49:42,982   creating build/lib
2021-08-24T21:49:42,983   creating build/lib/bonito
2021-08-24T21:49:42,984   copying bonito/multiprocessing.py -> build/lib/bonito
2021-08-24T21:49:42,987   copying bonito/io.py -> build/lib/bonito
2021-08-24T21:49:42,989   copying bonito/aligner.py -> build/lib/bonito
2021-08-24T21:49:42,991   copying bonito/training.py -> build/lib/bonito
2021-08-24T21:49:42,994   copying bonito/fast5.py -> build/lib/bonito
2021-08-24T21:49:42,996   copying bonito/__init__.py -> build/lib/bonito
2021-08-24T21:49:42,998   copying bonito/nn.py -> build/lib/bonito
2021-08-24T21:49:43,000   copying bonito/util.py -> build/lib/bonito
2021-08-24T21:49:43,003   creating build/lib/bonito/crf
2021-08-24T21:49:43,004   copying bonito/crf/__init__.py -> build/lib/bonito/crf
2021-08-24T21:49:43,007   copying bonito/crf/model.py -> build/lib/bonito/crf
2021-08-24T21:49:43,009   copying bonito/crf/basecall.py -> build/lib/bonito/crf
2021-08-24T21:49:43,013   creating build/lib/bonito/cli
2021-08-24T21:49:43,013   copying bonito/cli/evaluate.py -> build/lib/bonito/cli
2021-08-24T21:49:43,016   copying bonito/cli/download.py -> build/lib/bonito/cli
2021-08-24T21:49:43,018   copying bonito/cli/train.py -> build/lib/bonito/cli
2021-08-24T21:49:43,021   copying bonito/cli/view.py -> build/lib/bonito/cli
2021-08-24T21:49:43,023   copying bonito/cli/__init__.py -> build/lib/bonito/cli
2021-08-24T21:49:43,024   copying bonito/cli/export.py -> build/lib/bonito/cli
2021-08-24T21:49:43,026   copying bonito/cli/duplex.py -> build/lib/bonito/cli
2021-08-24T21:49:43,029   copying bonito/cli/convert.py -> build/lib/bonito/cli
2021-08-24T21:49:43,032   copying bonito/cli/basecaller.py -> build/lib/bonito/cli
2021-08-24T21:49:43,034   creating build/lib/bonito/ctc
2021-08-24T21:49:43,035   copying bonito/ctc/__init__.py -> build/lib/bonito/ctc
2021-08-24T21:49:43,038   copying bonito/ctc/model.py -> build/lib/bonito/ctc
2021-08-24T21:49:43,040   copying bonito/ctc/basecall.py -> build/lib/bonito/ctc
2021-08-24T21:49:43,042   running egg_info
2021-08-24T21:49:43,057   writing ont_bonito_cuda111.egg-info/PKG-INFO
2021-08-24T21:49:43,059   writing dependency_links to ont_bonito_cuda111.egg-info/dependency_links.txt
2021-08-24T21:49:43,061   writing entry points to ont_bonito_cuda111.egg-info/entry_points.txt
2021-08-24T21:49:43,062   writing requirements to ont_bonito_cuda111.egg-info/requires.txt
2021-08-24T21:49:43,063   writing top-level names to ont_bonito_cuda111.egg-info/top_level.txt
2021-08-24T21:49:43,070   reading manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:43,073   reading manifest template 'MANIFEST.in'
2021-08-24T21:49:43,076   adding license file 'LICENCE.txt'
2021-08-24T21:49:43,080   writing manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:43,082   creating build/lib/bonito/data
2021-08-24T21:49:43,083   copying bonito/data/README.md -> build/lib/bonito/data
2021-08-24T21:49:43,086   creating build/lib/bonito/models
2021-08-24T21:49:43,087   copying bonito/models/README.md -> build/lib/bonito/models
2021-08-24T21:49:43,089   creating build/lib/bonito/models/configs
2021-08-24T21:49:43,090   copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs
2021-08-24T21:49:43,092   copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs
2021-08-24T21:49:43,095   copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs
2021-08-24T21:49:43,103   installing to build/bdist.linux-armv7l/wheel
2021-08-24T21:49:43,103   running install
2021-08-24T21:49:43,104   running install_lib
2021-08-24T21:49:43,107   creating build/bdist.linux-armv7l
2021-08-24T21:49:43,108   creating build/bdist.linux-armv7l/wheel
2021-08-24T21:49:43,110   creating build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,111   copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,114   creating build/bdist.linux-armv7l/wheel/bonito/data
2021-08-24T21:49:43,115   copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data
2021-08-24T21:49:43,117   copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,120   copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,122   creating build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:43,123   copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:43,125   copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:43,128   copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:43,130   copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,133   copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,135   copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,138   creating build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,139   copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,141   copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,143   copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,146   copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,148   copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,149   copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,152   copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,154   copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,157   copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:43,160   creating build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:43,161   copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:43,163   copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:43,165   copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:43,168   creating build/bdist.linux-armv7l/wheel/bonito/models
2021-08-24T21:49:43,170   creating build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:43,171   copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:43,173   copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:43,175   copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:43,177   copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models
2021-08-24T21:49:43,179   copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,181   copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:43,184   running install_egg_info
2021-08-24T21:49:43,193   Copying ont_bonito_cuda111.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.4.0a4-py3.9.egg-info
2021-08-24T21:49:43,206   running install_scripts
2021-08-24T21:49:43,287   error: [Errno 2] No such file or directory: 'bonito'
2021-08-24T21:49:43,384   Building wheel for ont-bonito-cuda111 (setup.py): finished with status 'error'
2021-08-24T21:49:43,385   ERROR: Failed building wheel for ont-bonito-cuda111
2021-08-24T21:49:43,385   Running setup.py clean for ont-bonito-cuda111
2021-08-24T21:49:43,386   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-479uyb4z/ont-bonito-cuda111_3f721309b795483189be88ef3a9e682b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-479uyb4z/ont-bonito-cuda111_3f721309b795483189be88ef3a9e682b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-08-24T21:49:44,053   Building with CUDA 11.1
2021-08-24T21:49:44,242   running clean
2021-08-24T21:49:44,244   removing 'build/lib' (and everything under it)
2021-08-24T21:49:44,256   removing 'build/bdist.linux-armv7l' (and everything under it)
2021-08-24T21:49:44,277   'build/scripts-3.9' does not exist -- can't clean it
2021-08-24T21:49:44,278   removing 'build'
2021-08-24T21:49:44,335 Failed to build ont-bonito-cuda111
2021-08-24T21:49:44,335 ERROR: Failed to build one or more wheels
2021-08-24T21:49:44,336 Exception information:
2021-08-24T21:49:44,336 Traceback (most recent call last):
2021-08-24T21:49:44,336   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-08-24T21:49:44,336     status = self.run(options, args)
2021-08-24T21:49:44,336   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-08-24T21:49:44,336     return func(self, options, args)
2021-08-24T21:49:44,336   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-08-24T21:49:44,336     raise CommandError(
2021-08-24T21:49:44,336 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-08-24T21:49:44,339 Removed build tracker: '/tmp/pip-req-tracker-5la5gnfb'