2021-08-24T21:49:46,010 Created temporary directory: /tmp/pip-ephem-wheel-cache-mc21apio
2021-08-24T21:49:46,013 Created temporary directory: /tmp/pip-req-tracker-mjfrc2me
2021-08-24T21:49:46,013 Initialized build tracking at /tmp/pip-req-tracker-mjfrc2me
2021-08-24T21:49:46,013 Created build tracker: /tmp/pip-req-tracker-mjfrc2me
2021-08-24T21:49:46,014 Entered build tracker: /tmp/pip-req-tracker-mjfrc2me
2021-08-24T21:49:46,014 Created temporary directory: /tmp/pip-wheel-5wg5hs8p
2021-08-24T21:49:46,046 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-08-24T21:49:46,049 2 location(s) to search for versions of ont-bonito-cuda111:
2021-08-24T21:49:46,049 * https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,049 * https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,049 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,050 Getting page https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,051 Found index url https://pypi.org/simple
2021-08-24T21:49:46,139   Found link https://files.pythonhosted.org/packages/4b/e9/326d358ab1d32037c760b9f7b1010edf4eb9de07b68af8e0fdd8bdc5c0c7/ont-bonito-cuda111-0.4.0a0.tar.gz#sha256=ed1d55117b8295e2bce313b195623d2a3ae111242e7e74dd0daaabfc348eb02e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a0
2021-08-24T21:49:46,140   Found link https://files.pythonhosted.org/packages/a1/9f/19c6571eb24457fa6ed8cf7699f2586a4b376cf875c58f0c26ced182f6a1/ont-bonito-cuda111-0.4.0a1.tar.gz#sha256=7d920614f050aba11b20ccfa082e290c24b79c963445c64a6f5691cb98004e4e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a1
2021-08-24T21:49:46,140   Found link https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a2
2021-08-24T21:49:46,140   Found link https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a4
2021-08-24T21:49:46,141   Found link https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0
2021-08-24T21:49:46,141 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,141 Getting page https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,142 Found index url https://www.piwheels.org/simple
2021-08-24T21:49:46,271 Skipping link: not a file: https://www.piwheels.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,271 Skipping link: not a file: https://pypi.org/simple/ont-bonito-cuda111/
2021-08-24T21:49:46,291 Given no hashes to check 1 links for project 'ont-bonito-cuda111': discarding no candidates
2021-08-24T21:49:46,310 Collecting ont-bonito-cuda111==0.4.0
2021-08-24T21:49:46,311   Created temporary directory: /tmp/pip-unpack-hkqetpbk
2021-08-24T21:49:46,354   Downloading ont-bonito-cuda111-0.4.0.tar.gz (43 kB)
2021-08-24T21:49:46,480   Added ont-bonito-cuda111==0.4.0 from https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f to build tracker '/tmp/pip-req-tracker-mjfrc2me'
2021-08-24T21:49:46,482     Running setup.py (path:/tmp/pip-wheel-5wg5hs8p/ont-bonito-cuda111_e4bb4b1bb8bc4911a379d544bf0b48fc/setup.py) egg_info for package ont-bonito-cuda111
2021-08-24T21:49:46,482     Created temporary directory: /tmp/pip-pip-egg-info-owwwi3zp
2021-08-24T21:49:46,483     Running command python setup.py egg_info
2021-08-24T21:49:47,340     Building with CUDA 11.1
2021-08-24T21:49:47,341     running egg_info
2021-08-24T21:49:47,343     creating /tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info
2021-08-24T21:49:47,344     writing /tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/PKG-INFO
2021-08-24T21:49:47,346     writing dependency_links to /tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/dependency_links.txt
2021-08-24T21:49:47,348     writing entry points to /tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/entry_points.txt
2021-08-24T21:49:47,349     writing requirements to /tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/requires.txt
2021-08-24T21:49:47,350     writing top-level names to /tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/top_level.txt
2021-08-24T21:49:47,352     writing manifest file '/tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:47,502     reading manifest file '/tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:47,503     reading manifest template 'MANIFEST.in'
2021-08-24T21:49:47,507     adding license file 'LICENCE.txt'
2021-08-24T21:49:47,510     writing manifest file '/tmp/pip-pip-egg-info-owwwi3zp/ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:47,573   Source in /tmp/pip-wheel-5wg5hs8p/ont-bonito-cuda111_e4bb4b1bb8bc4911a379d544bf0b48fc has version 0.4.0, which satisfies requirement ont-bonito-cuda111==0.4.0 from https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f
2021-08-24T21:49:47,574   Removed ont-bonito-cuda111==0.4.0 from https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f from build tracker '/tmp/pip-req-tracker-mjfrc2me'
2021-08-24T21:49:47,579 Created temporary directory: /tmp/pip-unpack-_dfewbgl
2021-08-24T21:49:47,579 Building wheels for collected packages: ont-bonito-cuda111
2021-08-24T21:49:47,584   Created temporary directory: /tmp/pip-wheel-0wt7u6pk
2021-08-24T21:49:47,585   Building wheel for ont-bonito-cuda111 (setup.py): started
2021-08-24T21:49:47,585   Destination directory: /tmp/pip-wheel-0wt7u6pk
2021-08-24T21:49:47,585   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5wg5hs8p/ont-bonito-cuda111_e4bb4b1bb8bc4911a379d544bf0b48fc/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5wg5hs8p/ont-bonito-cuda111_e4bb4b1bb8bc4911a379d544bf0b48fc/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0wt7u6pk
2021-08-24T21:49:48,252   Building with CUDA 11.1
2021-08-24T21:49:48,467   running bdist_wheel
2021-08-24T21:49:48,628   running build
2021-08-24T21:49:48,628   running build_py
2021-08-24T21:49:48,772   creating build
2021-08-24T21:49:48,772   creating build/lib
2021-08-24T21:49:48,773   creating build/lib/bonito
2021-08-24T21:49:48,774   copying bonito/multiprocessing.py -> build/lib/bonito
2021-08-24T21:49:48,776   copying bonito/io.py -> build/lib/bonito
2021-08-24T21:49:48,779   copying bonito/aligner.py -> build/lib/bonito
2021-08-24T21:49:48,781   copying bonito/training.py -> build/lib/bonito
2021-08-24T21:49:48,783   copying bonito/fast5.py -> build/lib/bonito
2021-08-24T21:49:48,785   copying bonito/__init__.py -> build/lib/bonito
2021-08-24T21:49:48,787   copying bonito/nn.py -> build/lib/bonito
2021-08-24T21:49:48,789   copying bonito/util.py -> build/lib/bonito
2021-08-24T21:49:48,792   creating build/lib/bonito/crf
2021-08-24T21:49:48,793   copying bonito/crf/__init__.py -> build/lib/bonito/crf
2021-08-24T21:49:48,796   copying bonito/crf/model.py -> build/lib/bonito/crf
2021-08-24T21:49:48,799   copying bonito/crf/basecall.py -> build/lib/bonito/crf
2021-08-24T21:49:48,803   creating build/lib/bonito/cli
2021-08-24T21:49:48,804   copying bonito/cli/evaluate.py -> build/lib/bonito/cli
2021-08-24T21:49:48,806   copying bonito/cli/download.py -> build/lib/bonito/cli
2021-08-24T21:49:48,809   copying bonito/cli/train.py -> build/lib/bonito/cli
2021-08-24T21:49:48,812   copying bonito/cli/view.py -> build/lib/bonito/cli
2021-08-24T21:49:48,814   copying bonito/cli/__init__.py -> build/lib/bonito/cli
2021-08-24T21:49:48,816   copying bonito/cli/export.py -> build/lib/bonito/cli
2021-08-24T21:49:48,818   copying bonito/cli/duplex.py -> build/lib/bonito/cli
2021-08-24T21:49:48,821   copying bonito/cli/convert.py -> build/lib/bonito/cli
2021-08-24T21:49:48,824   copying bonito/cli/basecaller.py -> build/lib/bonito/cli
2021-08-24T21:49:48,827   creating build/lib/bonito/ctc
2021-08-24T21:49:48,828   copying bonito/ctc/__init__.py -> build/lib/bonito/ctc
2021-08-24T21:49:48,830   copying bonito/ctc/model.py -> build/lib/bonito/ctc
2021-08-24T21:49:48,832   copying bonito/ctc/basecall.py -> build/lib/bonito/ctc
2021-08-24T21:49:48,834   running egg_info
2021-08-24T21:49:48,850   writing ont_bonito_cuda111.egg-info/PKG-INFO
2021-08-24T21:49:48,853   writing dependency_links to ont_bonito_cuda111.egg-info/dependency_links.txt
2021-08-24T21:49:48,854   writing entry points to ont_bonito_cuda111.egg-info/entry_points.txt
2021-08-24T21:49:48,856   writing requirements to ont_bonito_cuda111.egg-info/requires.txt
2021-08-24T21:49:48,857   writing top-level names to ont_bonito_cuda111.egg-info/top_level.txt
2021-08-24T21:49:48,864   reading manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:48,866   reading manifest template 'MANIFEST.in'
2021-08-24T21:49:48,869   adding license file 'LICENCE.txt'
2021-08-24T21:49:48,873   writing manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2021-08-24T21:49:48,876   creating build/lib/bonito/data
2021-08-24T21:49:48,877   copying bonito/data/README.md -> build/lib/bonito/data
2021-08-24T21:49:48,879   creating build/lib/bonito/models
2021-08-24T21:49:48,880   copying bonito/models/README.md -> build/lib/bonito/models
2021-08-24T21:49:48,883   creating build/lib/bonito/models/configs
2021-08-24T21:49:48,884   copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs
2021-08-24T21:49:48,886   copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs
2021-08-24T21:49:48,888   copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs
2021-08-24T21:49:48,896   installing to build/bdist.linux-armv7l/wheel
2021-08-24T21:49:48,896   running install
2021-08-24T21:49:48,897   running install_lib
2021-08-24T21:49:48,901   creating build/bdist.linux-armv7l
2021-08-24T21:49:48,901   creating build/bdist.linux-armv7l/wheel
2021-08-24T21:49:48,903   creating build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,905   copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,908   creating build/bdist.linux-armv7l/wheel/bonito/data
2021-08-24T21:49:48,909   copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data
2021-08-24T21:49:48,911   copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,914   copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,917   creating build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:48,918   copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:48,920   copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:48,922   copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-08-24T21:49:48,925   copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,927   copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,930   copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,932   creating build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,933   copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,935   copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,938   copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,941   copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,943   copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,944   copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,946   copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,949   copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,952   copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-08-24T21:49:48,955   creating build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:48,956   copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:48,958   copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:48,960   copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-08-24T21:49:48,963   creating build/bdist.linux-armv7l/wheel/bonito/models
2021-08-24T21:49:48,965   creating build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:48,966   copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:48,968   copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:48,970   copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-08-24T21:49:48,972   copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models
2021-08-24T21:49:48,974   copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,977   copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito
2021-08-24T21:49:48,980   running install_egg_info
2021-08-24T21:49:48,988   Copying ont_bonito_cuda111.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.4.0-py3.9.egg-info
2021-08-24T21:49:49,003   running install_scripts
2021-08-24T21:49:49,067   error: [Errno 2] No such file or directory: 'bonito'
2021-08-24T21:49:49,158   Building wheel for ont-bonito-cuda111 (setup.py): finished with status 'error'
2021-08-24T21:49:49,158   ERROR: Failed building wheel for ont-bonito-cuda111
2021-08-24T21:49:49,159   Running setup.py clean for ont-bonito-cuda111
2021-08-24T21:49:49,159   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5wg5hs8p/ont-bonito-cuda111_e4bb4b1bb8bc4911a379d544bf0b48fc/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5wg5hs8p/ont-bonito-cuda111_e4bb4b1bb8bc4911a379d544bf0b48fc/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-08-24T21:49:49,820   Building with CUDA 11.1
2021-08-24T21:49:50,011   running clean
2021-08-24T21:49:50,013   removing 'build/lib' (and everything under it)
2021-08-24T21:49:50,025   removing 'build/bdist.linux-armv7l' (and everything under it)
2021-08-24T21:49:50,046   'build/scripts-3.9' does not exist -- can't clean it
2021-08-24T21:49:50,046   removing 'build'
2021-08-24T21:49:50,102 Failed to build ont-bonito-cuda111
2021-08-24T21:49:50,102 ERROR: Failed to build one or more wheels
2021-08-24T21:49:50,103 Exception information:
2021-08-24T21:49:50,103 Traceback (most recent call last):
2021-08-24T21:49:50,103   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-08-24T21:49:50,103     status = self.run(options, args)
2021-08-24T21:49:50,103   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-08-24T21:49:50,103     return func(self, options, args)
2021-08-24T21:49:50,103   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-08-24T21:49:50,103     raise CommandError(
2021-08-24T21:49:50,103 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-08-24T21:49:50,106 Removed build tracker: '/tmp/pip-req-tracker-mjfrc2me'