2021-08-26T04:16:25,498 Created temporary directory: /tmp/pip-ephem-wheel-cache-hjw4nhbw
2021-08-26T04:16:25,502 Created temporary directory: /tmp/pip-req-tracker-pt9e424s
2021-08-26T04:16:25,502 Initialized build tracking at /tmp/pip-req-tracker-pt9e424s
2021-08-26T04:16:25,503 Created build tracker: /tmp/pip-req-tracker-pt9e424s
2021-08-26T04:16:25,503 Entered build tracker: /tmp/pip-req-tracker-pt9e424s
2021-08-26T04:16:25,504 Created temporary directory: /tmp/pip-wheel-1g6rt8us
2021-08-26T04:16:25,540 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-08-26T04:16:25,543 2 location(s) to search for versions of ilus:
2021-08-26T04:16:25,543 * https://pypi.org/simple/ilus/
2021-08-26T04:16:25,543 * https://www.piwheels.org/simple/ilus/
2021-08-26T04:16:25,544 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2021-08-26T04:16:25,544 Getting page https://pypi.org/simple/ilus/
2021-08-26T04:16:25,546 Found index url https://pypi.org/simple
2021-08-26T04:16:25,641   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz#sha256=767a37912251f975aa58152f257c6e58fcc3e7a3bda060c85cda4f26b10a827f (from https://pypi.org/simple/ilus/), version: 0.1.0
2021-08-26T04:16:25,642   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced (from https://pypi.org/simple/ilus/), version: 1.0.0
2021-08-26T04:16:25,642   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz#sha256=3fb04424d0f6cd75ad0dc7ffbbd8fead26054fc6c8bd04b8e90fc9799f23ce21 (from https://pypi.org/simple/ilus/), version: 1.0.1
2021-08-26T04:16:25,642   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 (from https://pypi.org/simple/ilus/), version: 1.0.2
2021-08-26T04:16:25,643   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz#sha256=abe78bfca9a55ef26dc5b261ce5d24855d0c56b6f5d06d3603ca758a4a745e22 (from https://pypi.org/simple/ilus/), version: 1.0.3
2021-08-26T04:16:25,643   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb (from https://pypi.org/simple/ilus/), version: 1.0.4
2021-08-26T04:16:25,643   Found link https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz#sha256=6718f6974318107260fe6346af26ada4470cd5c0b567000086bfb2484c9d443c (from https://pypi.org/simple/ilus/), version: 1.1.0
2021-08-26T04:16:25,644 Fetching project page and analyzing links: https://www.piwheels.org/simple/ilus/
2021-08-26T04:16:25,644 Getting page https://www.piwheels.org/simple/ilus/
2021-08-26T04:16:25,645 Found index url https://www.piwheels.org/simple
2021-08-26T04:16:25,794   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.0-py3-none-any.whl#sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275 (from https://www.piwheels.org/simple/ilus/)
2021-08-26T04:16:25,797   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.1-py3-none-any.whl#sha256=b1787a95b35aa0f798fa13b7407a034445b46252d3453354d569d03a9bd458ce (from https://www.piwheels.org/simple/ilus/)
2021-08-26T04:16:25,798   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.2-py3-none-any.whl#sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161 (from https://www.piwheels.org/simple/ilus/)
2021-08-26T04:16:25,798   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.4-py3-none-any.whl#sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6 (from https://www.piwheels.org/simple/ilus/)
2021-08-26T04:16:25,798 Skipping link: not a file: https://www.piwheels.org/simple/ilus/
2021-08-26T04:16:25,798 Skipping link: not a file: https://pypi.org/simple/ilus/
2021-08-26T04:16:25,814 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2021-08-26T04:16:25,828 Collecting ilus==1.1.0
2021-08-26T04:16:25,830   Created temporary directory: /tmp/pip-unpack-s5n6titz
2021-08-26T04:16:25,872   Downloading ilus-1.1.0.tar.gz (35 kB)
2021-08-26T04:16:25,973   Added ilus==1.1.0 from https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz#sha256=6718f6974318107260fe6346af26ada4470cd5c0b567000086bfb2484c9d443c to build tracker '/tmp/pip-req-tracker-pt9e424s'
2021-08-26T04:16:25,974     Running setup.py (path:/tmp/pip-wheel-1g6rt8us/ilus_55030145126c4dcea82c5747f5cfcd8b/setup.py) egg_info for package ilus
2021-08-26T04:16:25,975     Created temporary directory: /tmp/pip-pip-egg-info-b44q29qo
2021-08-26T04:16:25,976     Running command python setup.py egg_info
2021-08-26T04:16:26,923     running egg_info
2021-08-26T04:16:26,926     creating /tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info
2021-08-26T04:16:26,927     writing /tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/PKG-INFO
2021-08-26T04:16:26,930     writing dependency_links to /tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/dependency_links.txt
2021-08-26T04:16:26,933     writing entry points to /tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/entry_points.txt
2021-08-26T04:16:26,934     writing requirements to /tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/requires.txt
2021-08-26T04:16:26,936     writing top-level names to /tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/top_level.txt
2021-08-26T04:16:26,938     writing manifest file '/tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/SOURCES.txt'
2021-08-26T04:16:27,089     reading manifest file '/tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/SOURCES.txt'
2021-08-26T04:16:27,090     adding license file 'LICENSE.txt'
2021-08-26T04:16:27,093     writing manifest file '/tmp/pip-pip-egg-info-b44q29qo/ilus.egg-info/SOURCES.txt'
2021-08-26T04:16:27,159   Source in /tmp/pip-wheel-1g6rt8us/ilus_55030145126c4dcea82c5747f5cfcd8b has version 1.1.0, which satisfies requirement ilus==1.1.0 from https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz#sha256=6718f6974318107260fe6346af26ada4470cd5c0b567000086bfb2484c9d443c
2021-08-26T04:16:27,161   Removed ilus==1.1.0 from https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz#sha256=6718f6974318107260fe6346af26ada4470cd5c0b567000086bfb2484c9d443c from build tracker '/tmp/pip-req-tracker-pt9e424s'
2021-08-26T04:16:27,167 Created temporary directory: /tmp/pip-unpack-_padb19w
2021-08-26T04:16:27,168 Building wheels for collected packages: ilus
2021-08-26T04:16:27,173   Created temporary directory: /tmp/pip-wheel-v9pwhiy0
2021-08-26T04:16:27,174   Building wheel for ilus (setup.py): started
2021-08-26T04:16:27,174   Destination directory: /tmp/pip-wheel-v9pwhiy0
2021-08-26T04:16:27,174   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1g6rt8us/ilus_55030145126c4dcea82c5747f5cfcd8b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1g6rt8us/ilus_55030145126c4dcea82c5747f5cfcd8b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v9pwhiy0
2021-08-26T04:16:28,092   running bdist_wheel
2021-08-26T04:16:28,096   running build
2021-08-26T04:16:28,097   running build_py
2021-08-26T04:16:28,227   creating build
2021-08-26T04:16:28,227   creating build/lib
2021-08-26T04:16:28,228   creating build/lib/ilus
2021-08-26T04:16:28,230   copying ilus/main.py -> build/lib/ilus
2021-08-26T04:16:28,232   copying ilus/__init__.py -> build/lib/ilus
2021-08-26T04:16:28,234   copying ilus/utils.py -> build/lib/ilus
2021-08-26T04:16:28,236   creating build/lib/ilus/pipeline
2021-08-26T04:16:28,237   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2021-08-26T04:16:28,239   copying ilus/pipeline/wgs.py -> build/lib/ilus/pipeline
2021-08-26T04:16:28,242   creating build/lib/ilus/launch
2021-08-26T04:16:28,243   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2021-08-26T04:16:28,246   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2021-08-26T04:16:28,249   creating build/lib/ilus/modules
2021-08-26T04:16:28,250   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2021-08-26T04:16:28,252   creating build/lib/ilus/modules/vcf
2021-08-26T04:16:28,253   copying ilus/modules/vcf/__init__.py -> build/lib/ilus/modules/vcf
2021-08-26T04:16:28,255   copying ilus/modules/vcf/bcftools.py -> build/lib/ilus/modules/vcf
2021-08-26T04:16:28,258   creating build/lib/ilus/modules/ngsaligner
2021-08-26T04:16:28,259   copying ilus/modules/ngsaligner/__init__.py -> build/lib/ilus/modules/ngsaligner
2021-08-26T04:16:28,261   copying ilus/modules/ngsaligner/bwa.py -> build/lib/ilus/modules/ngsaligner
2021-08-26T04:16:28,264   creating build/lib/ilus/modules/variants
2021-08-26T04:16:28,265   copying ilus/modules/variants/__init__.py -> build/lib/ilus/modules/variants
2021-08-26T04:16:28,267   copying ilus/modules/variants/gatk.py -> build/lib/ilus/modules/variants
2021-08-26T04:16:28,271   creating build/lib/ilus/modules/summary
2021-08-26T04:16:28,272   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2021-08-26T04:16:28,274   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2021-08-26T04:16:28,276   running egg_info
2021-08-26T04:16:28,292   writing ilus.egg-info/PKG-INFO
2021-08-26T04:16:28,295   writing dependency_links to ilus.egg-info/dependency_links.txt
2021-08-26T04:16:28,297   writing entry points to ilus.egg-info/entry_points.txt
2021-08-26T04:16:28,298   writing requirements to ilus.egg-info/requires.txt
2021-08-26T04:16:28,300   writing top-level names to ilus.egg-info/top_level.txt
2021-08-26T04:16:28,308   reading manifest file 'ilus.egg-info/SOURCES.txt'
2021-08-26T04:16:28,310   adding license file 'LICENSE.txt'
2021-08-26T04:16:28,313   writing manifest file 'ilus.egg-info/SOURCES.txt'
2021-08-26T04:16:28,326   installing to build/bdist.linux-armv7l/wheel
2021-08-26T04:16:28,326   running install
2021-08-26T04:16:28,327   running install_lib
2021-08-26T04:16:28,332   creating build/bdist.linux-armv7l
2021-08-26T04:16:28,332   creating build/bdist.linux-armv7l/wheel
2021-08-26T04:16:28,334   creating build/bdist.linux-armv7l/wheel/ilus
2021-08-26T04:16:28,335   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/ilus
2021-08-26T04:16:28,338   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/ilus
2021-08-26T04:16:28,341   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-08-26T04:16:28,342   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-08-26T04:16:28,344   copying build/lib/ilus/pipeline/wgs.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-08-26T04:16:28,346   copying build/lib/ilus/utils.py -> build/bdist.linux-armv7l/wheel/ilus
2021-08-26T04:16:28,349   creating build/bdist.linux-armv7l/wheel/ilus/launch
2021-08-26T04:16:28,350   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-08-26T04:16:28,353   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-08-26T04:16:28,355   creating build/bdist.linux-armv7l/wheel/ilus/modules
2021-08-26T04:16:28,357   creating build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-08-26T04:16:28,358   copying build/lib/ilus/modules/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-08-26T04:16:28,361   copying build/lib/ilus/modules/vcf/bcftools.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-08-26T04:16:28,363   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules
2021-08-26T04:16:28,366   creating build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-08-26T04:16:28,367   copying build/lib/ilus/modules/ngsaligner/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-08-26T04:16:28,369   copying build/lib/ilus/modules/ngsaligner/bwa.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-08-26T04:16:28,373   creating build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-08-26T04:16:28,374   copying build/lib/ilus/modules/variants/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-08-26T04:16:28,376   copying build/lib/ilus/modules/variants/gatk.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-08-26T04:16:28,379   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-08-26T04:16:28,380   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-08-26T04:16:28,382   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-08-26T04:16:28,384   running install_egg_info
2021-08-26T04:16:28,394   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/ilus-1.1.0-py3.7.egg-info
2021-08-26T04:16:28,411   running install_scripts
2021-08-26T04:16:28,496   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-08-26T04:16:28,502   creating build/bdist.linux-armv7l/wheel/ilus-1.1.0.dist-info/WHEEL
2021-08-26T04:16:28,506   creating '/tmp/pip-wheel-v9pwhiy0/ilus-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-08-26T04:16:28,508   adding 'ilus/__init__.py'
2021-08-26T04:16:28,510   adding 'ilus/main.py'
2021-08-26T04:16:28,512   adding 'ilus/utils.py'
2021-08-26T04:16:28,514   adding 'ilus/launch/__init__.py'
2021-08-26T04:16:28,516   adding 'ilus/launch/runfunction.py'
2021-08-26T04:16:28,519   adding 'ilus/modules/__init__.py'
2021-08-26T04:16:28,521   adding 'ilus/modules/ngsaligner/__init__.py'
2021-08-26T04:16:28,522   adding 'ilus/modules/ngsaligner/bwa.py'
2021-08-26T04:16:28,524   adding 'ilus/modules/summary/__init__.py'
2021-08-26T04:16:28,526   adding 'ilus/modules/summary/bam.py'
2021-08-26T04:16:28,528   adding 'ilus/modules/variants/__init__.py'
2021-08-26T04:16:28,529   adding 'ilus/modules/variants/gatk.py'
2021-08-26T04:16:28,531   adding 'ilus/modules/vcf/__init__.py'
2021-08-26T04:16:28,533   adding 'ilus/modules/vcf/bcftools.py'
2021-08-26T04:16:28,535   adding 'ilus/pipeline/__init__.py'
2021-08-26T04:16:28,536   adding 'ilus/pipeline/wgs.py'
2021-08-26T04:16:28,539   adding 'ilus-1.1.0.dist-info/LICENSE.txt'
2021-08-26T04:16:28,543   adding 'ilus-1.1.0.dist-info/METADATA'
2021-08-26T04:16:28,544   adding 'ilus-1.1.0.dist-info/WHEEL'
2021-08-26T04:16:28,545   adding 'ilus-1.1.0.dist-info/entry_points.txt'
2021-08-26T04:16:28,546   adding 'ilus-1.1.0.dist-info/top_level.txt'
2021-08-26T04:16:28,547   adding 'ilus-1.1.0.dist-info/RECORD'
2021-08-26T04:16:28,548   removing build/bdist.linux-armv7l/wheel
2021-08-26T04:16:28,632   Building wheel for ilus (setup.py): finished with status 'done'
2021-08-26T04:16:28,635   Created wheel for ilus: filename=ilus-1.1.0-py3-none-any.whl size=26254 sha256=d696434a6d520599e55cead1b1aed46c68b4068394416117d1cadd7f36db6c7d
2021-08-26T04:16:28,635   Stored in directory: /tmp/pip-ephem-wheel-cache-hjw4nhbw/wheels/60/0c/c1/fa0b48db4961ce7a8b83422b6de0728c3f93fad9f5fd6f04bd
2021-08-26T04:16:28,649 Successfully built ilus
2021-08-26T04:16:28,654 Removed build tracker: '/tmp/pip-req-tracker-pt9e424s'