2021-09-01T02:04:29,146 Created temporary directory: /tmp/pip-ephem-wheel-cache-awx1hf72
2021-09-01T02:04:29,152 Created temporary directory: /tmp/pip-req-tracker-4k19yn4a
2021-09-01T02:04:29,153 Initialized build tracking at /tmp/pip-req-tracker-4k19yn4a
2021-09-01T02:04:29,154 Created build tracker: /tmp/pip-req-tracker-4k19yn4a
2021-09-01T02:04:29,154 Entered build tracker: /tmp/pip-req-tracker-4k19yn4a
2021-09-01T02:04:29,156 Created temporary directory: /tmp/pip-wheel-m4p_tl8w
2021-09-01T02:04:29,217 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-01T02:04:29,221 2 location(s) to search for versions of novartis-pisces:
2021-09-01T02:04:29,221 * https://pypi.org/simple/novartis-pisces/
2021-09-01T02:04:29,221 * https://www.piwheels.org/simple/novartis-pisces/
2021-09-01T02:04:29,221 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2021-09-01T02:04:29,224 Getting page https://pypi.org/simple/novartis-pisces/
2021-09-01T02:04:29,228 Found index url https://pypi.org/simple
2021-09-01T02:04:29,546   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2021-09-01T02:04:29,547   Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2
2021-09-01T02:04:29,548   Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3
2021-09-01T02:04:29,549   Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1
2021-09-01T02:04:29,550   Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4
2021-09-01T02:04:29,551 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/
2021-09-01T02:04:29,551 Getting page https://www.piwheels.org/simple/novartis-pisces/
2021-09-01T02:04:29,554 Found index url https://www.piwheels.org/simple
2021-09-01T02:04:29,716   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-01T02:04:29,717   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-01T02:04:29,718   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-01T02:04:29,718   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-01T02:04:29,750 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2021-09-01T02:04:29,782 Collecting novartis-pisces==0.1.4
2021-09-01T02:04:29,785   Created temporary directory: /tmp/pip-unpack-l4jz0l6f
2021-09-01T02:04:31,157   Downloading novartis-pisces-0.1.4.tar.gz (18.4 MB)
2021-09-01T02:04:39,746   Added novartis-pisces==0.1.4 from https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 to build tracker '/tmp/pip-req-tracker-4k19yn4a'
2021-09-01T02:04:39,750     Running setup.py (path:/tmp/pip-wheel-m4p_tl8w/novartis-pisces_ef4b72a3e31c460bb3684c628ef7a91f/setup.py) egg_info for package novartis-pisces
2021-09-01T02:04:39,752     Created temporary directory: /tmp/pip-pip-egg-info-fwp2d5b5
2021-09-01T02:04:39,754     Running command python setup.py egg_info
2021-09-01T02:04:45,092     DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-09-01T02:04:48,147     running egg_info
2021-09-01T02:04:48,153     creating /tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info
2021-09-01T02:04:48,156     writing entry points to /tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/entry_points.txt
2021-09-01T02:04:48,159     writing top-level names to /tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/top_level.txt
2021-09-01T02:04:48,161     writing requirements to /tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/requires.txt
2021-09-01T02:04:48,165     writing dependency_links to /tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/dependency_links.txt
2021-09-01T02:04:48,169     writing /tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/PKG-INFO
2021-09-01T02:04:48,174     writing manifest file '/tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/SOURCES.txt'
2021-09-01T02:04:48,565     reading manifest file '/tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/SOURCES.txt'
2021-09-01T02:04:48,569     reading manifest template 'MANIFEST.in'
2021-09-01T02:04:48,587     writing manifest file '/tmp/pip-pip-egg-info-fwp2d5b5/novartis_pisces.egg-info/SOURCES.txt'
2021-09-01T02:04:48,749   Source in /tmp/pip-wheel-m4p_tl8w/novartis-pisces_ef4b72a3e31c460bb3684c628ef7a91f has version 0.1.4, which satisfies requirement novartis-pisces==0.1.4 from https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20
2021-09-01T02:04:48,751   Removed novartis-pisces==0.1.4 from https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 from build tracker '/tmp/pip-req-tracker-4k19yn4a'
2021-09-01T02:04:48,759 Created temporary directory: /tmp/pip-unpack-uu5ch5ht
2021-09-01T02:04:48,760 Building wheels for collected packages: novartis-pisces
2021-09-01T02:04:48,769   Created temporary directory: /tmp/pip-wheel-cydwibq3
2021-09-01T02:04:48,770   Building wheel for novartis-pisces (setup.py): started
2021-09-01T02:04:48,771   Destination directory: /tmp/pip-wheel-cydwibq3
2021-09-01T02:04:48,771   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-m4p_tl8w/novartis-pisces_ef4b72a3e31c460bb3684c628ef7a91f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-m4p_tl8w/novartis-pisces_ef4b72a3e31c460bb3684c628ef7a91f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-cydwibq3
2021-09-01T02:04:51,697   running bdist_wheel
2021-09-01T02:04:51,704   running build
2021-09-01T02:04:51,705   running build_py
2021-09-01T02:04:52,021   creating build
2021-09-01T02:04:52,022   creating build/lib
2021-09-01T02:04:52,023   creating build/lib/pisces
2021-09-01T02:04:52,026   copying pisces/index.py -> build/lib/pisces
2021-09-01T02:04:52,033   copying pisces/cli.py -> build/lib/pisces
2021-09-01T02:04:52,038   copying pisces/qc.py -> build/lib/pisces
2021-09-01T02:04:52,043   copying pisces/fastq.py -> build/lib/pisces
2021-09-01T02:04:52,049   copying pisces/__init__.py -> build/lib/pisces
2021-09-01T02:04:52,056   copying pisces/submit.py -> build/lib/pisces
2021-09-01T02:04:52,063   copying pisces/run.py -> build/lib/pisces
2021-09-01T02:04:52,068   running egg_info
2021-09-01T02:04:52,077   writing requirements to novartis_pisces.egg-info/requires.txt
2021-09-01T02:04:52,079   writing entry points to novartis_pisces.egg-info/entry_points.txt
2021-09-01T02:04:52,081   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2021-09-01T02:04:52,084   writing top-level names to novartis_pisces.egg-info/top_level.txt
2021-09-01T02:04:52,086   writing novartis_pisces.egg-info/PKG-INFO
2021-09-01T02:04:52,125   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-09-01T02:04:52,162   reading manifest template 'MANIFEST.in'
2021-09-01T02:04:52,192   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-09-01T02:04:52,202   copying pisces/config.json -> build/lib/pisces
2021-09-01T02:04:52,207   creating build/lib/pisces/R
2021-09-01T02:04:52,209   copying pisces/R/.Rprofile -> build/lib/pisces/R
2021-09-01T02:04:52,213   copying pisces/R/.gitignore -> build/lib/pisces/R
2021-09-01T02:04:52,218   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2021-09-01T02:04:52,225   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2021-09-01T02:04:52,229   creating build/lib/pisces/R/renv
2021-09-01T02:04:52,231   copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv
2021-09-01T02:04:52,239   creating build/lib/pisces/data
2021-09-01T02:04:52,241   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2021-09-01T02:04:52,252   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2021-09-01T02:04:52,260   creating build/lib/pisces/scripts
2021-09-01T02:04:52,263   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2021-09-01T02:04:52,272   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2021-09-01T02:04:52,279   creating build/lib/pisces/tests
2021-09-01T02:04:52,280   copying pisces/tests/test_cli.py -> build/lib/pisces/tests
2021-09-01T02:04:52,291   installing to build/bdist.linux-armv7l/wheel
2021-09-01T02:04:52,292   running install
2021-09-01T02:04:52,293   running install_lib
2021-09-01T02:04:52,301   creating build/bdist.linux-armv7l
2021-09-01T02:04:52,302   creating build/bdist.linux-armv7l/wheel
2021-09-01T02:04:52,306   creating build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,308   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,315   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,323   creating build/bdist.linux-armv7l/wheel/pisces/tests
2021-09-01T02:04:52,326   copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests
2021-09-01T02:04:52,332   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,337   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,343   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,348   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,355   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-01T02:04:52,358   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-01T02:04:52,365   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-01T02:04:52,375   creating build/bdist.linux-armv7l/wheel/pisces/data
2021-09-01T02:04:52,377   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-09-01T02:04:52,385   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-09-01T02:04:52,393   creating build/bdist.linux-armv7l/wheel/pisces/R
2021-09-01T02:04:52,396   creating build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-09-01T02:04:52,399   copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-09-01T02:04:52,407   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-01T02:04:52,416   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-01T02:04:52,421   copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-01T02:04:52,427   copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-01T02:04:52,432   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,437   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-01T02:04:52,443   running install_egg_info
2021-09-01T02:04:52,455   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4-py3.5.egg-info
2021-09-01T02:04:52,485   running install_scripts
2021-09-01T02:04:52,582   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.dist-info/WHEEL
2021-09-01T02:04:52,910   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2021-09-01T02:04:52,916   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.4-py3-none-any.whl size=57331 sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba
2021-09-01T02:04:52,917   Stored in directory: /tmp/pip-ephem-wheel-cache-awx1hf72/wheels/bb/b0/db/3fa2a275d755579d5c6aa64b72c1b558dd368064a9e821cc5f
2021-09-01T02:04:52,935 Successfully built novartis-pisces
2021-09-01T02:04:52,950 Removed build tracker: '/tmp/pip-req-tracker-4k19yn4a'