2021-09-01T19:58:56,665 Created temporary directory: /tmp/pip-ephem-wheel-cache-6c1co0w_
2021-09-01T19:58:56,672 Created temporary directory: /tmp/pip-req-tracker-rawb8qdn
2021-09-01T19:58:56,673 Initialized build tracking at /tmp/pip-req-tracker-rawb8qdn
2021-09-01T19:58:56,673 Created build tracker: /tmp/pip-req-tracker-rawb8qdn
2021-09-01T19:58:56,674 Entered build tracker: /tmp/pip-req-tracker-rawb8qdn
2021-09-01T19:58:56,675 Created temporary directory: /tmp/pip-wheel-qalop4r_
2021-09-01T19:58:56,732 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-01T19:58:56,735 2 location(s) to search for versions of damona:
2021-09-01T19:58:56,735 * https://pypi.org/simple/damona/
2021-09-01T19:58:56,735 * https://www.piwheels.org/simple/damona/
2021-09-01T19:58:56,736 Fetching project page and analyzing links: https://pypi.org/simple/damona/
2021-09-01T19:58:56,738 Getting page https://pypi.org/simple/damona/
2021-09-01T19:58:56,742 Found index url https://pypi.org/simple
2021-09-01T19:58:57,087   Found link https://files.pythonhosted.org/packages/cd/9e/27ac1c5e27caa58f2d161dff75c5c4cdd92670440b07e7709802a9459b9c/damona-0.1.0.tar.gz#sha256=ffd1316e321796f0fa5a56b54f75dd4f5d927ecf0bc9c1a336f160f038ae6890 (from https://pypi.org/simple/damona/), version: 0.1.0
2021-09-01T19:58:57,089   Found link https://files.pythonhosted.org/packages/c9/20/7fe4d2f1c34300ed845a3b033a8cd8b3de72b82a25599330b10e2317ca48/damona-0.1.1.tar.gz#sha256=b5c70b83f51e4d32f2f3dda532abf3713a177b8e5ef7a0b26a44a801a0313236 (from https://pypi.org/simple/damona/), version: 0.1.1
2021-09-01T19:58:57,090   Found link https://files.pythonhosted.org/packages/36/9b/153b2e8849b6cf3b78ac13c3e30fbd4f1774c31b7b34cb849eb3a14bf69c/damona-0.2.0.tar.gz#sha256=6023b50d62eb18c216383a96021bf88cdf651ebc741397892b74bc49d642bdc1 (from https://pypi.org/simple/damona/), version: 0.2.0
2021-09-01T19:58:57,091   Found link https://files.pythonhosted.org/packages/5d/85/e936fbc729383625e399b7dabd3238995c915084986ec573588855c921ee/damona-0.2.1.tar.gz#sha256=69aa6cb1042ad0bf06363f68867de0fec1be4cf717d73574829d15967fadf019 (from https://pypi.org/simple/damona/), version: 0.2.1
2021-09-01T19:58:57,091   Found link https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22 (from https://pypi.org/simple/damona/), version: 0.2.2
2021-09-01T19:58:57,092   Found link https://files.pythonhosted.org/packages/2a/2f/3eca4d23aad1c0df2a1f708f49fd68de86b47fb3ff0b7270182074adbe24/damona-0.3.0.tar.gz#sha256=d87f56f4c50b9f87c6ef42a8c2ee9642e404889894524acd879dbfa301d88477 (from https://pypi.org/simple/damona/), version: 0.3.0
2021-09-01T19:58:57,093   Found link https://files.pythonhosted.org/packages/a4/85/cf3ba30aadaf7e322c200ff61874eb24a3ded6d64ad308d15760d26338f1/damona-0.3.1.tar.gz#sha256=a99d48dcfb750e079771ae08e93ade1b0223cc08744cc65bf5d9623771c74439 (from https://pypi.org/simple/damona/), version: 0.3.1
2021-09-01T19:58:57,094   Found link https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz#sha256=533275af540923fe2ff8a67b0ee49852cfa322880906e32461b79019aecf444e (from https://pypi.org/simple/damona/), version: 0.4.0
2021-09-01T19:58:57,095   Found link https://files.pythonhosted.org/packages/66/87/cc314bac96ca0afc29e95d91a07d70c56df5c37cb4209f8bfc4eb959418a/damona-0.4.1.tar.gz#sha256=cc5f816a84aca53cae91d7c851a2023bbea9f9f6bf5c8a3f4ac2a3d5f7588340 (from https://pypi.org/simple/damona/), version: 0.4.1
2021-09-01T19:58:57,096   Found link https://files.pythonhosted.org/packages/50/5a/2b91d89732ad7eabd61d2060de0ecc94c4a04c25999f199d2cb93ff943e5/damona-0.4.2.tar.gz#sha256=13f160a7c327acad47e006164bd84e766c94e36f50fe0eef3617a0031b1a2a5f (from https://pypi.org/simple/damona/), version: 0.4.2
2021-09-01T19:58:57,097   Found link https://files.pythonhosted.org/packages/e5/d8/0d4fe942e4a6dd2b5a45ac16a038f99dbea115dde61c41aec5f2815ef2a6/damona-0.4.3.tar.gz#sha256=ccd9e632ac9e87e2dd4774cad490a80de8c91391ca9f1f42ca44f27a41782edc (from https://pypi.org/simple/damona/), version: 0.4.3
2021-09-01T19:58:57,098   Found link https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz#sha256=6742de042d81a26a288ad91fb2824fd5cede8f6f2d593238ab65ef88ddb85108 (from https://pypi.org/simple/damona/), version: 0.5.0
2021-09-01T19:58:57,099   Found link https://files.pythonhosted.org/packages/73/65/3e225ffc73fe435cc40b8658c3838e18b66bac46c2f2227c858c1751b485/damona-0.5.1.tar.gz#sha256=3d74601d8dc7e8fea702c5932b8eb699b1e0496e01cd714051e05a63de254694 (from https://pypi.org/simple/damona/), version: 0.5.1
2021-09-01T19:58:57,100   Found link https://files.pythonhosted.org/packages/09/b4/f0570169435b2629cac80df83e3140b82a480cdfd795f8f6c54c4c36d53e/damona-0.5.2.tar.gz#sha256=1e6f0abd77e643ef7f78e226078fd426d4948fe4b4d04689aacb798b985b0145 (from https://pypi.org/simple/damona/), version: 0.5.2
2021-09-01T19:58:57,100 Fetching project page and analyzing links: https://www.piwheels.org/simple/damona/
2021-09-01T19:58:57,101 Getting page https://www.piwheels.org/simple/damona/
2021-09-01T19:58:57,104 Found index url https://www.piwheels.org/simple
2021-09-01T19:58:57,286   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.2.2-py3-none-any.whl#sha256=9165891e105689e76d95ddf46067837a1ee8b13d1d3af36b5af846c1b8ee4b92 (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,287   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.0-py3-none-any.whl#sha256=b9bad2b5e81d6bdca4b895a2d7dfcd19a5450509889904d9840f447a3a5a5f11 (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,287   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.1-py3-none-any.whl#sha256=934799d1cf5a920bc199416dc79952e268359cc4ad20d561571fd85e4c2d84dc (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,288   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.0-py3-none-any.whl#sha256=131eb91e5a14664d9a717ad2a12025787ed02a761336318d57de6076bbfe0695 (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,288   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.1-py3-none-any.whl#sha256=87fafcd2a349a2c12e3f28edb48015a402a3e50f89c4da8072167483d0d7a200 (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,289   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.2-py3-none-any.whl#sha256=326ee5f5e021f463128cc57ff6f3ff6129f46271dfaf4f823a5645f2e94d7aa4 (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,289   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.3-py3-none-any.whl#sha256=7b05aa70e5bb4664074b7b3d9b63873f9aa72e29217bf7a971614685c338107e (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,290   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.0-py3-none-any.whl#sha256=2b105c2097bf8572e7d57f7b842123852413d4d1266886b21d4f1e94b0d25109 (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,290   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.1-py3-none-any.whl#sha256=5a3fb6b370b13c5085238e60671c083d51b2afa8ca94314f8c382b46b4fecc0a (from https://www.piwheels.org/simple/damona/)
2021-09-01T19:58:57,326 Given no hashes to check 1 links for project 'damona': discarding no candidates
2021-09-01T19:58:57,359 Collecting damona==0.5.2
2021-09-01T19:58:57,362   Created temporary directory: /tmp/pip-unpack-bbuwx3qe
2021-09-01T19:58:57,576   Downloading damona-0.5.2.tar.gz (47 kB)
2021-09-01T19:58:58,078   Added damona==0.5.2 from https://files.pythonhosted.org/packages/09/b4/f0570169435b2629cac80df83e3140b82a480cdfd795f8f6c54c4c36d53e/damona-0.5.2.tar.gz#sha256=1e6f0abd77e643ef7f78e226078fd426d4948fe4b4d04689aacb798b985b0145 to build tracker '/tmp/pip-req-tracker-rawb8qdn'
2021-09-01T19:58:58,080     Running setup.py (path:/tmp/pip-wheel-qalop4r_/damona_865bb6b0dc2041bea4bab06a0c107a22/setup.py) egg_info for package damona
2021-09-01T19:58:58,082     Created temporary directory: /tmp/pip-pip-egg-info-d7neqeca
2021-09-01T19:58:58,083     Running command python setup.py egg_info
2021-09-01T19:59:00,267     running egg_info
2021-09-01T19:59:00,272     creating /tmp/pip-pip-egg-info-d7neqeca/damona.egg-info
2021-09-01T19:59:00,275     writing dependency_links to /tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/dependency_links.txt
2021-09-01T19:59:00,278     writing /tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/PKG-INFO
2021-09-01T19:59:00,286     writing top-level names to /tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/top_level.txt
2021-09-01T19:59:00,288     writing entry points to /tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/entry_points.txt
2021-09-01T19:59:00,290     writing requirements to /tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/requires.txt
2021-09-01T19:59:00,295     writing manifest file '/tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/SOURCES.txt'
2021-09-01T19:59:00,698     reading manifest file '/tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/SOURCES.txt'
2021-09-01T19:59:00,701     reading manifest template 'MANIFEST.in'
2021-09-01T19:59:00,704     warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-01T19:59:00,706     warning: no previously-included files matching '*pyc' found under directory '*'
2021-09-01T19:59:00,722     writing manifest file '/tmp/pip-pip-egg-info-d7neqeca/damona.egg-info/SOURCES.txt'
2021-09-01T19:59:00,881   Source in /tmp/pip-wheel-qalop4r_/damona_865bb6b0dc2041bea4bab06a0c107a22 has version 0.5.2, which satisfies requirement damona==0.5.2 from https://files.pythonhosted.org/packages/09/b4/f0570169435b2629cac80df83e3140b82a480cdfd795f8f6c54c4c36d53e/damona-0.5.2.tar.gz#sha256=1e6f0abd77e643ef7f78e226078fd426d4948fe4b4d04689aacb798b985b0145
2021-09-01T19:59:00,883   Removed damona==0.5.2 from https://files.pythonhosted.org/packages/09/b4/f0570169435b2629cac80df83e3140b82a480cdfd795f8f6c54c4c36d53e/damona-0.5.2.tar.gz#sha256=1e6f0abd77e643ef7f78e226078fd426d4948fe4b4d04689aacb798b985b0145 from build tracker '/tmp/pip-req-tracker-rawb8qdn'
2021-09-01T19:59:00,897 Created temporary directory: /tmp/pip-unpack-leok6y0y
2021-09-01T19:59:00,898 Building wheels for collected packages: damona
2021-09-01T19:59:00,907   Created temporary directory: /tmp/pip-wheel-4u477_dr
2021-09-01T19:59:00,908   Building wheel for damona (setup.py): started
2021-09-01T19:59:00,909   Destination directory: /tmp/pip-wheel-4u477_dr
2021-09-01T19:59:00,910   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qalop4r_/damona_865bb6b0dc2041bea4bab06a0c107a22/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qalop4r_/damona_865bb6b0dc2041bea4bab06a0c107a22/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4u477_dr
2021-09-01T19:59:03,126   running bdist_wheel
2021-09-01T19:59:03,132   running build
2021-09-01T19:59:03,133   running build_py
2021-09-01T19:59:03,450   creating build
2021-09-01T19:59:03,451   creating build/lib
2021-09-01T19:59:03,452   creating build/lib/damona
2021-09-01T19:59:03,455   copying damona/colors.py -> build/lib/damona
2021-09-01T19:59:03,462   copying damona/config.py -> build/lib/damona
2021-09-01T19:59:03,466   copying damona/environ.py -> build/lib/damona
2021-09-01T19:59:03,472   copying damona/script.py -> build/lib/damona
2021-09-01T19:59:03,478   copying damona/registry.py -> build/lib/damona
2021-09-01T19:59:03,485   copying damona/builders.py -> build/lib/damona
2021-09-01T19:59:03,492   copying damona/__init__.py -> build/lib/damona
2021-09-01T19:59:03,499   copying damona/install.py -> build/lib/damona
2021-09-01T19:59:03,507   copying damona/common.py -> build/lib/damona
2021-09-01T19:59:03,514   creating build/lib/damona/shell
2021-09-01T19:59:03,517   copying damona/shell/__init__.py -> build/lib/damona/shell
2021-09-01T19:59:03,522   creating build/lib/damona/recipes
2021-09-01T19:59:03,525   copying damona/recipes/__init__.py -> build/lib/damona/recipes
2021-09-01T19:59:03,563   creating build/lib/damona/recipes/sequana_tools
2021-09-01T19:59:03,566   copying damona/recipes/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/lib/damona/recipes/sequana_tools
2021-09-01T19:59:03,571   copying damona/recipes/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/lib/damona/recipes/sequana_tools
2021-09-01T19:59:03,575   copying damona/recipes/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/lib/damona/recipes/sequana_tools
2021-09-01T19:59:03,580   creating build/lib/damona/recipes/rtools
2021-09-01T19:59:03,582   copying damona/recipes/rtools/Singularity.Rtools_1.0.0 -> build/lib/damona/recipes/rtools
2021-09-01T19:59:03,588   copying damona/recipes/rtools/Singularity.Rtools_1.1.0 -> build/lib/damona/recipes/rtools
2021-09-01T19:59:03,595   creating build/lib/damona/recipes/rnadiff
2021-09-01T19:59:03,597   copying damona/recipes/rnadiff/Singularity.rnadiff_1.7.1 -> build/lib/damona/recipes/rnadiff
2021-09-01T19:59:03,604   creating build/lib/damona/recipes/minimap2
2021-09-01T19:59:03,606   copying damona/recipes/minimap2/Singularity.minimap2_2.17.0 -> build/lib/damona/recipes/minimap2
2021-09-01T19:59:03,611   creating build/lib/damona/recipes/prokka
2021-09-01T19:59:03,613   copying damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/lib/damona/recipes/prokka
2021-09-01T19:59:03,618   creating build/lib/damona/recipes/kraken
2021-09-01T19:59:03,619   copying damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/lib/damona/recipes/kraken
2021-09-01T19:59:03,625   copying damona/recipes/kraken/Singularity.kraken_1.1 -> build/lib/damona/recipes/kraken
2021-09-01T19:59:03,631   creating build/lib/damona/recipes/rnaseqc
2021-09-01T19:59:03,633   copying damona/recipes/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/lib/damona/recipes/rnaseqc
2021-09-01T19:59:03,640   creating build/lib/damona/recipes/graphviz
2021-09-01T19:59:03,643   copying damona/recipes/graphviz/Singularity.graphviz_2.43.0 -> build/lib/damona/recipes/graphviz
2021-09-01T19:59:03,649   creating build/lib/damona/recipes/sequana_perl_tools
2021-09-01T19:59:03,651   copying damona/recipes/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/lib/damona/recipes/sequana_perl_tools
2021-09-01T19:59:03,656   creating build/lib/damona/recipes/salmon
2021-09-01T19:59:03,658   copying damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/lib/damona/recipes/salmon
2021-09-01T19:59:03,663   creating build/lib/damona/recipes/bcl2fastq
2021-09-01T19:59:03,665   copying damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/lib/damona/recipes/bcl2fastq
2021-09-01T19:59:03,672   creating build/lib/damona/recipes/art
2021-09-01T19:59:03,675   copying damona/recipes/art/Singularity.art_3.11.14 -> build/lib/damona/recipes/art
2021-09-01T19:59:03,681   creating build/lib/damona/recipes/conda
2021-09-01T19:59:03,684   copying damona/recipes/conda/Singularity.conda_4.9.2 -> build/lib/damona/recipes/conda
2021-09-01T19:59:03,691   copying damona/recipes/conda/Singularity.conda_4.7.12 -> build/lib/damona/recipes/conda
2021-09-01T19:59:03,696   creating build/lib/damona/recipes/gffread
2021-09-01T19:59:03,698   copying damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/lib/damona/recipes/gffread
2021-09-01T19:59:03,703   creating build/lib/damona/recipes/damona
2021-09-01T19:59:03,705   copying damona/recipes/damona/Singularity.damona_0.4.2 -> build/lib/damona/recipes/damona
2021-09-01T19:59:03,712   copying damona/recipes/damona/Singularity.damona_0.3.0 -> build/lib/damona/recipes/damona
2021-09-01T19:59:03,718   creating build/lib/damona/recipes/fastqc
2021-09-01T19:59:03,721   copying damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/lib/damona/recipes/fastqc
2021-09-01T19:59:03,729   copying damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/lib/damona/recipes/fastqc
2021-09-01T19:59:03,733   creating build/lib/damona/recipes/phantompeakqualtools
2021-09-01T19:59:03,735   copying damona/recipes/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/lib/damona/recipes/phantompeakqualtools
2021-09-01T19:59:03,740   creating build/lib/damona/recipes/trf
2021-09-01T19:59:03,743   copying damona/recipes/trf/Singularity.trf_4.10.0 -> build/lib/damona/recipes/trf
2021-09-01T19:59:03,748   copying damona/recipes/trf/Singularity.trf_4.09 -> build/lib/damona/recipes/trf
2021-09-01T19:59:03,754   creating build/lib/damona/recipes/ucsc
2021-09-01T19:59:03,757   copying damona/recipes/ucsc/Singularity.ucsc_0.1.0 -> build/lib/damona/recipes/ucsc
2021-09-01T19:59:03,764   creating build/lib/damona/recipes/R
2021-09-01T19:59:03,766   copying damona/recipes/R/Singularity.R_3.6.3 -> build/lib/damona/recipes/R
2021-09-01T19:59:03,773   copying damona/recipes/R/Singularity.R_4.0.2 -> build/lib/damona/recipes/R
2021-09-01T19:59:03,778   creating build/lib/damona/recipes/quast
2021-09-01T19:59:03,780   copying damona/recipes/quast/Singularity.quast_5.0.2 -> build/lib/damona/recipes/quast
2021-09-01T19:59:03,785   creating build/lib/damona/recipes/canu
2021-09-01T19:59:03,787   copying damona/recipes/canu/Singularity.canu_1.6.0 -> build/lib/damona/recipes/canu
2021-09-01T19:59:03,794   copying damona/recipes/canu/Singularity.canu_1.8.0 -> build/lib/damona/recipes/canu
2021-09-01T19:59:03,801   creating build/lib/damona/recipes/falco
2021-09-01T19:59:03,805   copying damona/recipes/falco/Singularity.falco_0.2.1 -> build/lib/damona/recipes/falco
2021-09-01T19:59:03,813   copying damona/recipes/sequana_tools/registry.yaml -> build/lib/damona/recipes/sequana_tools
2021-09-01T19:59:03,819   copying damona/recipes/rtools/registry.yaml -> build/lib/damona/recipes/rtools
2021-09-01T19:59:03,825   copying damona/recipes/rnadiff/registry.yaml -> build/lib/damona/recipes/rnadiff
2021-09-01T19:59:03,831   copying damona/recipes/minimap2/registry.yaml -> build/lib/damona/recipes/minimap2
2021-09-01T19:59:03,837   copying damona/recipes/prokka/registry.yaml -> build/lib/damona/recipes/prokka
2021-09-01T19:59:03,843   copying damona/recipes/kraken/registry.yaml -> build/lib/damona/recipes/kraken
2021-09-01T19:59:03,849   copying damona/recipes/rnaseqc/registry.yaml -> build/lib/damona/recipes/rnaseqc
2021-09-01T19:59:03,855   copying damona/recipes/graphviz/registry.yaml -> build/lib/damona/recipes/graphviz
2021-09-01T19:59:03,861   copying damona/recipes/sequana_perl_tools/registry.yaml -> build/lib/damona/recipes/sequana_perl_tools
2021-09-01T19:59:03,867   copying damona/recipes/salmon/registry.yaml -> build/lib/damona/recipes/salmon
2021-09-01T19:59:03,873   copying damona/recipes/bcl2fastq/registry.yaml -> build/lib/damona/recipes/bcl2fastq
2021-09-01T19:59:03,879   copying damona/recipes/art/registry.yaml -> build/lib/damona/recipes/art
2021-09-01T19:59:03,884   creating build/lib/damona/recipes/hisat2
2021-09-01T19:59:03,887   copying damona/recipes/hisat2/registry.yaml -> build/lib/damona/recipes/hisat2
2021-09-01T19:59:03,894   copying damona/recipes/conda/registry.yaml -> build/lib/damona/recipes/conda
2021-09-01T19:59:03,900   copying damona/recipes/gffread/registry.yaml -> build/lib/damona/recipes/gffread
2021-09-01T19:59:03,906   copying damona/recipes/damona/registry.yaml -> build/lib/damona/recipes/damona
2021-09-01T19:59:03,912   copying damona/recipes/fastqc/registry.yaml -> build/lib/damona/recipes/fastqc
2021-09-01T19:59:03,918   copying damona/recipes/phantompeakqualtools/registry.yaml -> build/lib/damona/recipes/phantompeakqualtools
2021-09-01T19:59:03,924   copying damona/recipes/trf/registry.yaml -> build/lib/damona/recipes/trf
2021-09-01T19:59:03,930   copying damona/recipes/ucsc/registry.yaml -> build/lib/damona/recipes/ucsc
2021-09-01T19:59:03,936   copying damona/recipes/R/registry.yaml -> build/lib/damona/recipes/R
2021-09-01T19:59:03,942   copying damona/recipes/quast/registry.yaml -> build/lib/damona/recipes/quast
2021-09-01T19:59:03,947   copying damona/recipes/canu/registry.yaml -> build/lib/damona/recipes/canu
2021-09-01T19:59:03,954   copying damona/recipes/falco/registry.yaml -> build/lib/damona/recipes/falco
2021-09-01T19:59:03,964   installing to build/bdist.linux-armv7l/wheel
2021-09-01T19:59:03,964   running install
2021-09-01T19:59:03,968   running install_lib
2021-09-01T19:59:03,977   creating build/bdist.linux-armv7l
2021-09-01T19:59:03,978   creating build/bdist.linux-armv7l/wheel
2021-09-01T19:59:03,983   creating build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:03,986   copying build/lib/damona/colors.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:03,991   copying build/lib/damona/config.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:03,997   creating build/bdist.linux-armv7l/wheel/damona/shell
2021-09-01T19:59:03,998   copying build/lib/damona/shell/__init__.py -> build/bdist.linux-armv7l/wheel/damona/shell
2021-09-01T19:59:04,002   copying build/lib/damona/environ.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:04,008   copying build/lib/damona/script.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:04,014   copying build/lib/damona/registry.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:04,021   copying build/lib/damona/builders.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:04,028   copying build/lib/damona/__init__.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:04,034   copying build/lib/damona/install.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:04,042   copying build/lib/damona/common.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-01T19:59:04,052   creating build/bdist.linux-armv7l/wheel/damona/recipes
2021-09-01T19:59:04,056   creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-01T19:59:04,058   copying build/lib/damona/recipes/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-01T19:59:04,063   copying build/lib/damona/recipes/sequana_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-01T19:59:04,067   copying build/lib/damona/recipes/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-01T19:59:04,071   copying build/lib/damona/recipes/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-01T19:59:04,078   creating build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-01T19:59:04,080   copying build/lib/damona/recipes/rtools/Singularity.Rtools_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-01T19:59:04,086   copying build/lib/damona/recipes/rtools/Singularity.Rtools_1.1.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-01T19:59:04,092   copying build/lib/damona/recipes/rtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-01T19:59:04,098   creating build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2021-09-01T19:59:04,100   copying build/lib/damona/recipes/rnadiff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2021-09-01T19:59:04,104   copying build/lib/damona/recipes/rnadiff/Singularity.rnadiff_1.7.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2021-09-01T19:59:04,109   creating build/bdist.linux-armv7l/wheel/damona/recipes/minimap2
2021-09-01T19:59:04,111   copying build/lib/damona/recipes/minimap2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/minimap2
2021-09-01T19:59:04,115   copying build/lib/damona/recipes/minimap2/Singularity.minimap2_2.17.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/minimap2
2021-09-01T19:59:04,122   creating build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2021-09-01T19:59:04,125   copying build/lib/damona/recipes/prokka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2021-09-01T19:59:04,131   copying build/lib/damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2021-09-01T19:59:04,138   creating build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-01T19:59:04,141   copying build/lib/damona/recipes/kraken/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-01T19:59:04,147   copying build/lib/damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-01T19:59:04,152   copying build/lib/damona/recipes/kraken/Singularity.kraken_1.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-01T19:59:04,158   creating build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc
2021-09-01T19:59:04,160   copying build/lib/damona/recipes/rnaseqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc
2021-09-01T19:59:04,165   copying build/lib/damona/recipes/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc
2021-09-01T19:59:04,170   creating build/bdist.linux-armv7l/wheel/damona/recipes/graphviz
2021-09-01T19:59:04,172   copying build/lib/damona/recipes/graphviz/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/graphviz
2021-09-01T19:59:04,176   copying build/lib/damona/recipes/graphviz/Singularity.graphviz_2.43.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/graphviz
2021-09-01T19:59:04,184   creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_perl_tools
2021-09-01T19:59:04,186   copying build/lib/damona/recipes/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_perl_tools
2021-09-01T19:59:04,192   copying build/lib/damona/recipes/sequana_perl_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_perl_tools
2021-09-01T19:59:04,199   creating build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2021-09-01T19:59:04,202   copying build/lib/damona/recipes/salmon/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2021-09-01T19:59:04,209   copying build/lib/damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2021-09-01T19:59:04,216   creating build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2021-09-01T19:59:04,219   copying build/lib/damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2021-09-01T19:59:04,226   copying build/lib/damona/recipes/bcl2fastq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2021-09-01T19:59:04,234   creating build/bdist.linux-armv7l/wheel/damona/recipes/art
2021-09-01T19:59:04,236   copying build/lib/damona/recipes/art/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/art
2021-09-01T19:59:04,243   copying build/lib/damona/recipes/art/Singularity.art_3.11.14 -> build/bdist.linux-armv7l/wheel/damona/recipes/art
2021-09-01T19:59:04,251   creating build/bdist.linux-armv7l/wheel/damona/recipes/hisat2
2021-09-01T19:59:04,253   copying build/lib/damona/recipes/hisat2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/hisat2
2021-09-01T19:59:04,262   creating build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-01T19:59:04,264   copying build/lib/damona/recipes/conda/Singularity.conda_4.9.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-01T19:59:04,271   copying build/lib/damona/recipes/conda/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-01T19:59:04,277   copying build/lib/damona/recipes/conda/Singularity.conda_4.7.12 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-01T19:59:04,283   copying build/lib/damona/recipes/__init__.py -> build/bdist.linux-armv7l/wheel/damona/recipes
2021-09-01T19:59:04,290   creating build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2021-09-01T19:59:04,293   copying build/lib/damona/recipes/gffread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2021-09-01T19:59:04,300   copying build/lib/damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2021-09-01T19:59:04,307   creating build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-01T19:59:04,310   copying build/lib/damona/recipes/damona/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-01T19:59:04,317   copying build/lib/damona/recipes/damona/Singularity.damona_0.4.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-01T19:59:04,323   copying build/lib/damona/recipes/damona/Singularity.damona_0.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-01T19:59:04,331   creating build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-01T19:59:04,334   copying build/lib/damona/recipes/fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-01T19:59:04,340   copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-01T19:59:04,346   copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-01T19:59:04,354   creating build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools
2021-09-01T19:59:04,357   copying build/lib/damona/recipes/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools
2021-09-01T19:59:04,364   copying build/lib/damona/recipes/phantompeakqualtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools
2021-09-01T19:59:04,371   creating build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-01T19:59:04,374   copying build/lib/damona/recipes/trf/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-01T19:59:04,380   copying build/lib/damona/recipes/trf/Singularity.trf_4.10.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-01T19:59:04,386   copying build/lib/damona/recipes/trf/Singularity.trf_4.09 -> build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-01T19:59:04,394   creating build/bdist.linux-armv7l/wheel/damona/recipes/ucsc
2021-09-01T19:59:04,397   copying build/lib/damona/recipes/ucsc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/ucsc
2021-09-01T19:59:04,404   copying build/lib/damona/recipes/ucsc/Singularity.ucsc_0.1.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/ucsc
2021-09-01T19:59:04,412   creating build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-01T19:59:04,414   copying build/lib/damona/recipes/R/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-01T19:59:04,421   copying build/lib/damona/recipes/R/Singularity.R_3.6.3 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-01T19:59:04,427   copying build/lib/damona/recipes/R/Singularity.R_4.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-01T19:59:04,436   creating build/bdist.linux-armv7l/wheel/damona/recipes/quast
2021-09-01T19:59:04,438   copying build/lib/damona/recipes/quast/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/quast
2021-09-01T19:59:04,445   copying build/lib/damona/recipes/quast/Singularity.quast_5.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/quast
2021-09-01T19:59:04,453   creating build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-01T19:59:04,456   copying build/lib/damona/recipes/canu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-01T19:59:04,462   copying build/lib/damona/recipes/canu/Singularity.canu_1.6.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-01T19:59:04,469   copying build/lib/damona/recipes/canu/Singularity.canu_1.8.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-01T19:59:04,477   creating build/bdist.linux-armv7l/wheel/damona/recipes/falco
2021-09-01T19:59:04,480   copying build/lib/damona/recipes/falco/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/falco
2021-09-01T19:59:04,487   copying build/lib/damona/recipes/falco/Singularity.falco_0.2.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/falco
2021-09-01T19:59:04,492   running install_egg_info
2021-09-01T19:59:04,506   running egg_info
2021-09-01T19:59:04,508   writing entry points to damona.egg-info/entry_points.txt
2021-09-01T19:59:04,510   writing top-level names to damona.egg-info/top_level.txt
2021-09-01T19:59:04,513   writing requirements to damona.egg-info/requires.txt
2021-09-01T19:59:04,516   writing dependency_links to damona.egg-info/dependency_links.txt
2021-09-01T19:59:04,518   writing damona.egg-info/PKG-INFO
2021-09-01T19:59:04,544   reading manifest file 'damona.egg-info/SOURCES.txt'
2021-09-01T19:59:04,554   reading manifest template 'MANIFEST.in'
2021-09-01T19:59:04,557   warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-01T19:59:04,559   warning: no previously-included files matching '*pyc' found under directory '*'
2021-09-01T19:59:04,579   writing manifest file 'damona.egg-info/SOURCES.txt'
2021-09-01T19:59:04,583   Copying damona.egg-info to build/bdist.linux-armv7l/wheel/damona-0.5.2-py3.5.egg-info
2021-09-01T19:59:04,619   running install_scripts
2021-09-01T19:59:04,751   creating build/bdist.linux-armv7l/wheel/damona-0.5.2.dist-info/WHEEL
2021-09-01T19:59:05,424   Building wheel for damona (setup.py): finished with status 'done'
2021-09-01T19:59:05,429   Created wheel for damona: filename=damona-0.5.2-py3-none-any.whl size=68798 sha256=96b9d98f2692a8ed1bd3d044f9cbd041d99762fcc2003f9e4c657e7bb885a061
2021-09-01T19:59:05,430   Stored in directory: /tmp/pip-ephem-wheel-cache-6c1co0w_/wheels/ed/0e/7e/cd9c3aa1f37a8fa70243050999259021bf59a3f77305d42fd2
2021-09-01T19:59:05,456 Successfully built damona
2021-09-01T19:59:05,471 Removed build tracker: '/tmp/pip-req-tracker-rawb8qdn'