2021-09-02T07:27:07,546 Created temporary directory: /tmp/pip-ephem-wheel-cache-8ma7lkkw
2021-09-02T07:27:07,549 Created temporary directory: /tmp/pip-req-tracker-5rdsmf1s
2021-09-02T07:27:07,549 Initialized build tracking at /tmp/pip-req-tracker-5rdsmf1s
2021-09-02T07:27:07,550 Created build tracker: /tmp/pip-req-tracker-5rdsmf1s
2021-09-02T07:27:07,550 Entered build tracker: /tmp/pip-req-tracker-5rdsmf1s
2021-09-02T07:27:07,550 Created temporary directory: /tmp/pip-wheel-g7deo7hu
2021-09-02T07:27:07,584 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-02T07:27:07,587 2 location(s) to search for versions of pyckmeans:
2021-09-02T07:27:07,587 * https://pypi.org/simple/pyckmeans/
2021-09-02T07:27:07,587 * https://www.piwheels.org/simple/pyckmeans/
2021-09-02T07:27:07,587 Fetching project page and analyzing links: https://pypi.org/simple/pyckmeans/
2021-09-02T07:27:07,588 Getting page https://pypi.org/simple/pyckmeans/
2021-09-02T07:27:07,589 Found index url https://pypi.org/simple
2021-09-02T07:27:07,692   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/b9/de/b88d7cf79a79413b55544b2518298d141dc0ed1eb523c9ad11a36138e898/pyckmeans-0.4.0-cp36-cp36m-win_amd64.whl#sha256=6aeb4484ff08a798d70f2940c760c5be985f7091e00d6b7c3b047c9b0bf62992 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,693   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/57/d5/5da769497ad168ee6529d7694269c441b3ab416b92bb9f41256be2d26b43/pyckmeans-0.4.0-cp37-cp37m-win_amd64.whl#sha256=022a7b53c9332518fecc5b49c32ffc1a6344aaf59adf26dbc6574a156eb8ef94 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,693   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/d8/05/6aa2b5a06f19176e9207ebd22ce4d4a6667a8c606fd49dc1eba29afd8e0e/pyckmeans-0.4.0-cp38-cp38-win_amd64.whl#sha256=b9b523cc60e61c580f547d5098afd3501f099fc2c9048e04b5b125a4f868c45f (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,693   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/28/62/743350f8f49afc793a2e91ab4523a7445ff6fa24bd2048197179df2e99de/pyckmeans-0.4.0-cp39-cp39-win_amd64.whl#sha256=309e9defd80f3889147929a7f673e96f0b8918454a24c3903b222292df1dd6c1 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,694   Found link https://files.pythonhosted.org/packages/78/97/a48f8178873dcdcdab83fbcc419e3c80ebd8cc7128b24bc16c5b6294e9c0/pyckmeans-0.4.0.tar.gz#sha256=fec7e2ade4858eb4042d569dc155deaf5e744e426695087d70f3856f53de7824 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.4.0
2021-09-02T07:27:07,694   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/83/f7/9bef4342f20a1bad591d43bfe81132594cb3c2a970194243dac4f4aac2c2/pyckmeans-0.5.0-cp36-cp36m-win_amd64.whl#sha256=ce7d5280f8dda0a68c2d9de45f388c035b94a2e4b368f63054ad8fb16afbe90a (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,695   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/b6/63/6d4ec459f0fe9a3701e34f8c1d0a7508691f9a11b626fb619e7f7ace2b0d/pyckmeans-0.5.0-cp37-cp37m-win_amd64.whl#sha256=ccb8abfbe02a215dbb202c07f1765669735bd6929e5c53d70963c069404e1564 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,695   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/29/96/022e5cd2da35200b47f4eb6be702b6c9ebe565056b2e3282caca13c46d71/pyckmeans-0.5.0-cp38-cp38-win_amd64.whl#sha256=b430e721458d93752ccfcacfdf66686fa0074511f79e1341ccbc5d0f98588487 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,695   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/78/e2/0cd85235fadff92995027121701789d834648654346d146dae672a0d88a7/pyckmeans-0.5.0-cp39-cp39-win_amd64.whl#sha256=94c7568210c35694e6a4f31b271b9723d0f2dc961f30e5ed58dd1f4ea60fa1a3 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,696   Found link https://files.pythonhosted.org/packages/09/52/c44e7ae21dedb7303be86860b235681d8920546c43350be71c82557f5dba/pyckmeans-0.5.0.tar.gz#sha256=81f7a45cee14ce77e6c5d02d8e477252fcc1188a42d12958f90a9885c8488839 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.5.0
2021-09-02T07:27:07,696   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/4d/04/08d7d11b806b9864c51111a0d33619c0ae431dd73968bdf3f9a237c6d0d7/pyckmeans-0.6.0-cp36-cp36m-win_amd64.whl#sha256=34950a323266a433c310cf35b7b7a58bb5d31c33c086e890fd51a12b66c7e851 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,696   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/31/32/553ccffbd908bb6842ff8c932756b418698042e1c94eaf38100fbdf3dd96/pyckmeans-0.6.0-cp37-cp37m-win_amd64.whl#sha256=2adfe28b76537e30bf835af964a666c67304b28b26255462ed90dbb793b35740 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,696   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/ef/ce/5d6de11a933c49b3c2e485b28e4ae91ec65bdb30d9d809bd68b289a55e1c/pyckmeans-0.6.0-cp38-cp38-win_amd64.whl#sha256=646ad6caa3fea665445da34bf276cd6c88a788af1e052ab2e0789d62ce354908 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,697   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/b5/a8/04c6c8ddc29443c8052a2578592fd54ae63aa8b7c7675bd1dcf9bab5c325/pyckmeans-0.6.0-cp39-cp39-win_amd64.whl#sha256=8d5f3d59b132fd84ae66769a38a145f4cae9d455a9f465dd8d81652175d2aaee (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,697   Found link https://files.pythonhosted.org/packages/66/4a/274ddf2960f9a60d24ce2e4647ded134b72f91148b0005d412e48df4b8b1/pyckmeans-0.6.0.tar.gz#sha256=bcee68ba8a1e4b1962547874e8d5073a2922f3db75102023b0341f16cb0a52b4 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.6.0
2021-09-02T07:27:07,698   Found link https://files.pythonhosted.org/packages/6a/d6/406f57ed2c6e4b627e7d00a9204712c59ed91d60f621d4bd490ce53958f3/pyckmeans-0.6.1.tar.gz#sha256=cb5e6d3af736e393491a2592e1cc42cb2e2962e77f826593dab5996f06887531 (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.6.1
2021-09-02T07:27:07,698 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyckmeans/
2021-09-02T07:27:07,699 Getting page https://www.piwheels.org/simple/pyckmeans/
2021-09-02T07:27:07,700 Found index url https://www.piwheels.org/simple
2021-09-02T07:27:07,832   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.4.0-cp37-cp37m-linux_armv6l.whl#sha256=3ce14a9d9c6d38292fa0b21ae357dea7cf25fe1d2bab349e5f21cc18cd9c1aa9 (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,833   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.4.0-cp37-cp37m-linux_armv7l.whl#sha256=3ce14a9d9c6d38292fa0b21ae357dea7cf25fe1d2bab349e5f21cc18cd9c1aa9 (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,833   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.4.0-cp39-cp39-linux_armv6l.whl#sha256=0e412147006636ef292af891010598fa650941f952b974cb293175a25a706fdb (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,833   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.4.0-cp39-cp39-linux_armv7l.whl#sha256=0e412147006636ef292af891010598fa650941f952b974cb293175a25a706fdb (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,833   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.5.0-cp37-cp37m-linux_armv6l.whl#sha256=2c63a4c49c60988e501b29a42a9bc6a18226b39af3af371d790cd0222c59fc78 (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,834   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.5.0-cp37-cp37m-linux_armv7l.whl#sha256=2c63a4c49c60988e501b29a42a9bc6a18226b39af3af371d790cd0222c59fc78 (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,834   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.5.0-cp39-cp39-linux_armv6l.whl#sha256=b5bf4c06bbe6ead399f5345b74127e1f531f408e40fef9b7ea62f52514136a02 (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,834   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.5.0-cp39-cp39-linux_armv7l.whl#sha256=b5bf4c06bbe6ead399f5345b74127e1f531f408e40fef9b7ea62f52514136a02 (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,834   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=cb53b9cdf6bd087dee0318d6d4dff8bcec1bfb55674d4ddbab113a3162cc4fbb (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,834   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=cb53b9cdf6bd087dee0318d6d4dff8bcec1bfb55674d4ddbab113a3162cc4fbb (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2021-09-02T07:27:07,835 Skipping link: not a file: https://www.piwheels.org/simple/pyckmeans/
2021-09-02T07:27:07,835 Skipping link: not a file: https://pypi.org/simple/pyckmeans/
2021-09-02T07:27:07,855 Given no hashes to check 1 links for project 'pyckmeans': discarding no candidates
2021-09-02T07:27:07,874 Collecting pyckmeans==0.6.0
2021-09-02T07:27:07,876   Created temporary directory: /tmp/pip-unpack-9w84zr1p
2021-09-02T07:27:07,924   Downloading pyckmeans-0.6.0.tar.gz (55 kB)
2021-09-02T07:27:08,088   Added pyckmeans==0.6.0 from https://files.pythonhosted.org/packages/66/4a/274ddf2960f9a60d24ce2e4647ded134b72f91148b0005d412e48df4b8b1/pyckmeans-0.6.0.tar.gz#sha256=bcee68ba8a1e4b1962547874e8d5073a2922f3db75102023b0341f16cb0a52b4 to build tracker '/tmp/pip-req-tracker-5rdsmf1s'
2021-09-02T07:27:08,089     Running setup.py (path:/tmp/pip-wheel-g7deo7hu/pyckmeans_5ba5f653500644c5a5f134ca67da90d1/setup.py) egg_info for package pyckmeans
2021-09-02T07:27:08,090     Created temporary directory: /tmp/pip-pip-egg-info-clt9wvag
2021-09-02T07:27:08,091     Running command python setup.py egg_info
2021-09-02T07:27:08,997     running egg_info
2021-09-02T07:27:08,999     creating /tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info
2021-09-02T07:27:09,000     writing /tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info/PKG-INFO
2021-09-02T07:27:09,002     writing dependency_links to /tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info/dependency_links.txt
2021-09-02T07:27:09,005     writing requirements to /tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info/requires.txt
2021-09-02T07:27:09,006     writing top-level names to /tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info/top_level.txt
2021-09-02T07:27:09,037     writing manifest file '/tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info/SOURCES.txt'
2021-09-02T07:27:09,222     reading manifest file '/tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info/SOURCES.txt'
2021-09-02T07:27:09,224     adding license file 'LICENSE'
2021-09-02T07:27:09,227     writing manifest file '/tmp/pip-pip-egg-info-clt9wvag/pyckmeans.egg-info/SOURCES.txt'
2021-09-02T07:27:09,299   Source in /tmp/pip-wheel-g7deo7hu/pyckmeans_5ba5f653500644c5a5f134ca67da90d1 has version 0.6.0, which satisfies requirement pyckmeans==0.6.0 from https://files.pythonhosted.org/packages/66/4a/274ddf2960f9a60d24ce2e4647ded134b72f91148b0005d412e48df4b8b1/pyckmeans-0.6.0.tar.gz#sha256=bcee68ba8a1e4b1962547874e8d5073a2922f3db75102023b0341f16cb0a52b4
2021-09-02T07:27:09,300   Removed pyckmeans==0.6.0 from https://files.pythonhosted.org/packages/66/4a/274ddf2960f9a60d24ce2e4647ded134b72f91148b0005d412e48df4b8b1/pyckmeans-0.6.0.tar.gz#sha256=bcee68ba8a1e4b1962547874e8d5073a2922f3db75102023b0341f16cb0a52b4 from build tracker '/tmp/pip-req-tracker-5rdsmf1s'
2021-09-02T07:27:09,306 Created temporary directory: /tmp/pip-unpack-n3bw9da2
2021-09-02T07:27:09,306 Building wheels for collected packages: pyckmeans
2021-09-02T07:27:09,311   Created temporary directory: /tmp/pip-wheel-fmntfzof
2021-09-02T07:27:09,311   Building wheel for pyckmeans (setup.py): started
2021-09-02T07:27:09,311   Destination directory: /tmp/pip-wheel-fmntfzof
2021-09-02T07:27:09,312   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-g7deo7hu/pyckmeans_5ba5f653500644c5a5f134ca67da90d1/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-g7deo7hu/pyckmeans_5ba5f653500644c5a5f134ca67da90d1/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fmntfzof
2021-09-02T07:27:10,157   running bdist_wheel
2021-09-02T07:27:10,162   running build
2021-09-02T07:27:10,162   running build_py
2021-09-02T07:27:10,304   creating build
2021-09-02T07:27:10,304   creating build/lib.linux-armv7l-3.9
2021-09-02T07:27:10,305   creating build/lib.linux-armv7l-3.9/pyckmeans
2021-09-02T07:27:10,306   copying pyckmeans/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans
2021-09-02T07:27:10,309   creating build/lib.linux-armv7l-3.9/pyckmeans/ordination
2021-09-02T07:27:10,310   copying pyckmeans/ordination/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans/ordination
2021-09-02T07:27:10,313   creating build/lib.linux-armv7l-3.9/pyckmeans/core
2021-09-02T07:27:10,314   copying pyckmeans/core/ckmeans.py -> build/lib.linux-armv7l-3.9/pyckmeans/core
2021-09-02T07:27:10,317   copying pyckmeans/core/wecr.py -> build/lib.linux-armv7l-3.9/pyckmeans/core
2021-09-02T07:27:10,320   copying pyckmeans/core/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans/core
2021-09-02T07:27:10,322   copying pyckmeans/core/multickmeans.py -> build/lib.linux-armv7l-3.9/pyckmeans/core
2021-09-02T07:27:10,325   creating build/lib.linux-armv7l-3.9/pyckmeans/distance
2021-09-02T07:27:10,326   copying pyckmeans/distance/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans/distance
2021-09-02T07:27:10,328   copying pyckmeans/distance/c_interop.py -> build/lib.linux-armv7l-3.9/pyckmeans/distance
2021-09-02T07:27:10,332   creating build/lib.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:10,333   copying pyckmeans/io/fasta.py -> build/lib.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:10,335   copying pyckmeans/io/nucleotide_alignment.py -> build/lib.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:10,338   copying pyckmeans/io/csv.py -> build/lib.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:10,340   copying pyckmeans/io/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:10,342   copying pyckmeans/io/c_interop.py -> build/lib.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:10,344   copying pyckmeans/io/phylip.py -> build/lib.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:10,348   creating build/lib.linux-armv7l-3.9/pyckmeans/utils
2021-09-02T07:27:10,349   copying pyckmeans/utils/plotting.py -> build/lib.linux-armv7l-3.9/pyckmeans/utils
2021-09-02T07:27:10,352   copying pyckmeans/utils/progressbar.py -> build/lib.linux-armv7l-3.9/pyckmeans/utils
2021-09-02T07:27:10,354   copying pyckmeans/utils/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans/utils
2021-09-02T07:27:10,357   creating build/lib.linux-armv7l-3.9/pyckmeans/ordering
2021-09-02T07:27:10,358   copying pyckmeans/ordering/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans/ordering
2021-09-02T07:27:10,361   creating build/lib.linux-armv7l-3.9/pyckmeans/knee
2021-09-02T07:27:10,362   copying pyckmeans/knee/__init__.py -> build/lib.linux-armv7l-3.9/pyckmeans/knee
2021-09-02T07:27:10,371   running build_ext
2021-09-02T07:27:10,401   building 'pyckmeans.distance.lib.distance' extension
2021-09-02T07:27:10,402   creating build/temp.linux-armv7l-3.9
2021-09-02T07:27:10,402   creating build/temp.linux-armv7l-3.9/pyckmeans
2021-09-02T07:27:10,403   creating build/temp.linux-armv7l-3.9/pyckmeans/distance
2021-09-02T07:27:10,404   creating build/temp.linux-armv7l-3.9/pyckmeans/distance/src
2021-09-02T07:27:10,459   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c pyckmeans/distance/src/distance.cpp -o build/temp.linux-armv7l-3.9/pyckmeans/distance/src/distance.o
2021-09-02T07:27:11,975   pyckmeans/distance/src/distance.cpp: In function ‘std::vector<bool> completeDeletionSites(uint8_t*, int, int)’:
2021-09-02T07:27:11,976   pyckmeans/distance/src/distance.cpp:107:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,976     107 |     for (size_t i = 0; i < m; ++i) {
2021-09-02T07:27:11,976         |                        ~~^~~
2021-09-02T07:27:11,976   pyckmeans/distance/src/distance.cpp:109:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,977     109 |         for (size_t j = 0; j < n; ++j) {
2021-09-02T07:27:11,977         |                            ~~^~~
2021-09-02T07:27:11,978   pyckmeans/distance/src/distance.cpp: In function ‘void pDistance(uint8_t*, int, int, bool, double*)’:
2021-09-02T07:27:11,978   pyckmeans/distance/src/distance.cpp:133:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,979     133 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2021-09-02T07:27:11,979         |                              ~~~~^~~~~~~~~
2021-09-02T07:27:11,979   pyckmeans/distance/src/distance.cpp:134:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,979     134 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2021-09-02T07:27:11,979         |                                          ~~~~^~~
2021-09-02T07:27:11,979   pyckmeans/distance/src/distance.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,979     138 |                 for (size_t j = 0; j < m; ++j) {
2021-09-02T07:27:11,980         |                                    ~~^~~
2021-09-02T07:27:11,980   pyckmeans/distance/src/distance.cpp:163:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,980     163 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2021-09-02T07:27:11,980         |                              ~~~~^~~~~~~~~
2021-09-02T07:27:11,980   pyckmeans/distance/src/distance.cpp:164:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,980     164 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2021-09-02T07:27:11,980         |                                          ~~~~^~~
2021-09-02T07:27:11,981   pyckmeans/distance/src/distance.cpp:168:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,981     168 |                 for (size_t j = 0; j < m; ++j) {
2021-09-02T07:27:11,981         |                                    ~~^~~
2021-09-02T07:27:11,981   pyckmeans/distance/src/distance.cpp: In function ‘void jcDistance(uint8_t*, int, int, bool, double*)’:
2021-09-02T07:27:11,982   pyckmeans/distance/src/distance.cpp:202:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,982     202 |     for (size_t i = 0; i < n; ++i) {
2021-09-02T07:27:11,982         |                        ~~^~~
2021-09-02T07:27:11,982   pyckmeans/distance/src/distance.cpp:203:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,982     203 |         for (size_t j = 0; j < n; ++j) {
2021-09-02T07:27:11,982         |                            ~~^~~
2021-09-02T07:27:11,983   pyckmeans/distance/src/distance.cpp: In function ‘void k2pDistance(uint8_t*, int, int, bool, double*)’:
2021-09-02T07:27:11,983   pyckmeans/distance/src/distance.cpp:221:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,983     221 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2021-09-02T07:27:11,983         |                              ~~~~^~~~~~~~~
2021-09-02T07:27:11,984   pyckmeans/distance/src/distance.cpp:222:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,984     222 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2021-09-02T07:27:11,984         |                                          ~~~~^~~
2021-09-02T07:27:11,984   pyckmeans/distance/src/distance.cpp:227:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,984     227 |                 for (size_t j = 0; j < m; ++j) {
2021-09-02T07:27:11,984         |                                    ~~^~~
2021-09-02T07:27:11,985   pyckmeans/distance/src/distance.cpp:263:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,985     263 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2021-09-02T07:27:11,985         |                              ~~~~^~~~~~~~~
2021-09-02T07:27:11,986   pyckmeans/distance/src/distance.cpp:264:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,986     264 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2021-09-02T07:27:11,986         |                                          ~~~~^~~
2021-09-02T07:27:11,986   pyckmeans/distance/src/distance.cpp:269:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:11,986     269 |                 for (size_t j = 0; j < m; ++j) {
2021-09-02T07:27:11,986         |                                    ~~^~~
2021-09-02T07:27:12,649   creating build/lib.linux-armv7l-3.9/pyckmeans/distance/lib
2021-09-02T07:27:12,650   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pyckmeans/distance/src/distance.o -o build/lib.linux-armv7l-3.9/pyckmeans/distance/lib/distance.so
2021-09-02T07:27:12,928   building 'pyckmeans.io.lib.nucencode' extension
2021-09-02T07:27:12,929   creating build/temp.linux-armv7l-3.9/pyckmeans/io
2021-09-02T07:27:12,930   creating build/temp.linux-armv7l-3.9/pyckmeans/io/src
2021-09-02T07:27:12,930   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c pyckmeans/io/src/nucencode.cpp -o build/temp.linux-armv7l-3.9/pyckmeans/io/src/nucencode.o
2021-09-02T07:27:13,032   pyckmeans/io/src/nucencode.cpp: In function ‘void encodeNucleotides(uint8_t*, int, int)’:
2021-09-02T07:27:13,033   pyckmeans/io/src/nucencode.cpp:73:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:13,033      73 |     for (size_t i = 0; i < n; i++) {
2021-09-02T07:27:13,033         |                        ~~^~~
2021-09-02T07:27:13,033   pyckmeans/io/src/nucencode.cpp:74:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:13,033      74 |         for (size_t j = 0; j < m; j++) {
2021-09-02T07:27:13,034         |                            ~~^~~
2021-09-02T07:27:13,034   pyckmeans/io/src/nucencode.cpp: In function ‘void encodeNucleotides_uint32(uint32_t*, int, int, uint8_t*)’:
2021-09-02T07:27:13,034   pyckmeans/io/src/nucencode.cpp:86:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:13,034      86 |     for (size_t i = 0; i < n; i++) {
2021-09-02T07:27:13,034         |                        ~~^~~
2021-09-02T07:27:13,034   pyckmeans/io/src/nucencode.cpp:87:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-02T07:27:13,035      87 |         for (size_t j = 0; j < m; j++) {
2021-09-02T07:27:13,035         |                            ~~^~~
2021-09-02T07:27:13,112   creating build/lib.linux-armv7l-3.9/pyckmeans/io/lib
2021-09-02T07:27:13,113   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pyckmeans/io/src/nucencode.o -o build/lib.linux-armv7l-3.9/pyckmeans/io/lib/nucencode.so
2021-09-02T07:27:13,250   installing to build/bdist.linux-armv7l/wheel
2021-09-02T07:27:13,250   running install
2021-09-02T07:27:13,251   running install_lib
2021-09-02T07:27:13,255   creating build/bdist.linux-armv7l
2021-09-02T07:27:13,255   creating build/bdist.linux-armv7l/wheel
2021-09-02T07:27:13,257   creating build/bdist.linux-armv7l/wheel/pyckmeans
2021-09-02T07:27:13,259   creating build/bdist.linux-armv7l/wheel/pyckmeans/ordination
2021-09-02T07:27:13,274   copying build/lib.linux-armv7l-3.9/pyckmeans/ordination/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/ordination
2021-09-02T07:27:13,279   creating build/bdist.linux-armv7l/wheel/pyckmeans/core
2021-09-02T07:27:13,279   copying build/lib.linux-armv7l-3.9/pyckmeans/core/ckmeans.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2021-09-02T07:27:13,284   copying build/lib.linux-armv7l-3.9/pyckmeans/core/wecr.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2021-09-02T07:27:13,289   copying build/lib.linux-armv7l-3.9/pyckmeans/core/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2021-09-02T07:27:13,291   copying build/lib.linux-armv7l-3.9/pyckmeans/core/multickmeans.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2021-09-02T07:27:13,296   creating build/bdist.linux-armv7l/wheel/pyckmeans/distance
2021-09-02T07:27:13,298   creating build/bdist.linux-armv7l/wheel/pyckmeans/distance/lib
2021-09-02T07:27:13,300   copying build/lib.linux-armv7l-3.9/pyckmeans/distance/lib/distance.so -> build/bdist.linux-armv7l/wheel/pyckmeans/distance/lib
2021-09-02T07:27:13,305   copying build/lib.linux-armv7l-3.9/pyckmeans/distance/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/distance
2021-09-02T07:27:13,308   copying build/lib.linux-armv7l-3.9/pyckmeans/distance/c_interop.py -> build/bdist.linux-armv7l/wheel/pyckmeans/distance
2021-09-02T07:27:13,311   creating build/bdist.linux-armv7l/wheel/pyckmeans/io
2021-09-02T07:27:13,312   copying build/lib.linux-armv7l-3.9/pyckmeans/io/fasta.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2021-09-02T07:27:13,314   creating build/bdist.linux-armv7l/wheel/pyckmeans/io/lib
2021-09-02T07:27:13,315   copying build/lib.linux-armv7l-3.9/pyckmeans/io/lib/nucencode.so -> build/bdist.linux-armv7l/wheel/pyckmeans/io/lib
2021-09-02T07:27:13,318   copying build/lib.linux-armv7l-3.9/pyckmeans/io/nucleotide_alignment.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2021-09-02T07:27:13,321   copying build/lib.linux-armv7l-3.9/pyckmeans/io/csv.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2021-09-02T07:27:13,323   copying build/lib.linux-armv7l-3.9/pyckmeans/io/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2021-09-02T07:27:13,325   copying build/lib.linux-armv7l-3.9/pyckmeans/io/c_interop.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2021-09-02T07:27:13,327   copying build/lib.linux-armv7l-3.9/pyckmeans/io/phylip.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2021-09-02T07:27:13,329   copying build/lib.linux-armv7l-3.9/pyckmeans/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans
2021-09-02T07:27:13,332   creating build/bdist.linux-armv7l/wheel/pyckmeans/utils
2021-09-02T07:27:13,333   copying build/lib.linux-armv7l-3.9/pyckmeans/utils/plotting.py -> build/bdist.linux-armv7l/wheel/pyckmeans/utils
2021-09-02T07:27:13,336   copying build/lib.linux-armv7l-3.9/pyckmeans/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/pyckmeans/utils
2021-09-02T07:27:13,338   copying build/lib.linux-armv7l-3.9/pyckmeans/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/utils
2021-09-02T07:27:13,341   creating build/bdist.linux-armv7l/wheel/pyckmeans/ordering
2021-09-02T07:27:13,342   copying build/lib.linux-armv7l-3.9/pyckmeans/ordering/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/ordering
2021-09-02T07:27:13,346   creating build/bdist.linux-armv7l/wheel/pyckmeans/knee
2021-09-02T07:27:13,347   copying build/lib.linux-armv7l-3.9/pyckmeans/knee/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/knee
2021-09-02T07:27:13,350   running install_egg_info
2021-09-02T07:27:13,375   running egg_info
2021-09-02T07:27:13,376   writing pyckmeans.egg-info/PKG-INFO
2021-09-02T07:27:13,378   writing dependency_links to pyckmeans.egg-info/dependency_links.txt
2021-09-02T07:27:13,380   writing requirements to pyckmeans.egg-info/requires.txt
2021-09-02T07:27:13,381   writing top-level names to pyckmeans.egg-info/top_level.txt
2021-09-02T07:27:13,408   reading manifest file 'pyckmeans.egg-info/SOURCES.txt'
2021-09-02T07:27:13,416   adding license file 'LICENSE'
2021-09-02T07:27:13,422   writing manifest file 'pyckmeans.egg-info/SOURCES.txt'
2021-09-02T07:27:13,423   Copying pyckmeans.egg-info to build/bdist.linux-armv7l/wheel/pyckmeans-0.6.0-py3.9.egg-info
2021-09-02T07:27:13,435   running install_scripts
2021-09-02T07:27:13,519   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-09-02T07:27:13,523   creating build/bdist.linux-armv7l/wheel/pyckmeans-0.6.0.dist-info/WHEEL
2021-09-02T07:27:13,526   creating '/tmp/pip-wheel-fmntfzof/pyckmeans-0.6.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-09-02T07:27:13,528   adding 'pyckmeans/__init__.py'
2021-09-02T07:27:13,530   adding 'pyckmeans/core/__init__.py'
2021-09-02T07:27:13,533   adding 'pyckmeans/core/ckmeans.py'
2021-09-02T07:27:13,536   adding 'pyckmeans/core/multickmeans.py'
2021-09-02T07:27:13,540   adding 'pyckmeans/core/wecr.py'
2021-09-02T07:27:13,543   adding 'pyckmeans/distance/__init__.py'
2021-09-02T07:27:13,544   adding 'pyckmeans/distance/c_interop.py'
2021-09-02T07:27:13,562   adding 'pyckmeans/distance/lib/distance.so'
2021-09-02T07:27:13,564   adding 'pyckmeans/io/__init__.py'
2021-09-02T07:27:13,566   adding 'pyckmeans/io/c_interop.py'
2021-09-02T07:27:13,567   adding 'pyckmeans/io/csv.py'
2021-09-02T07:27:13,568   adding 'pyckmeans/io/fasta.py'
2021-09-02T07:27:13,570   adding 'pyckmeans/io/nucleotide_alignment.py'
2021-09-02T07:27:13,572   adding 'pyckmeans/io/phylip.py'
2021-09-02T07:27:13,575   adding 'pyckmeans/io/lib/nucencode.so'
2021-09-02T07:27:13,578   adding 'pyckmeans/knee/__init__.py'
2021-09-02T07:27:13,580   adding 'pyckmeans/ordering/__init__.py'
2021-09-02T07:27:13,583   adding 'pyckmeans/ordination/__init__.py'
2021-09-02T07:27:13,585   adding 'pyckmeans/utils/__init__.py'
2021-09-02T07:27:13,586   adding 'pyckmeans/utils/plotting.py'
2021-09-02T07:27:13,587   adding 'pyckmeans/utils/progressbar.py'
2021-09-02T07:27:13,590   adding 'pyckmeans-0.6.0.dist-info/LICENSE'
2021-09-02T07:27:13,591   adding 'pyckmeans-0.6.0.dist-info/METADATA'
2021-09-02T07:27:13,592   adding 'pyckmeans-0.6.0.dist-info/WHEEL'
2021-09-02T07:27:13,592   adding 'pyckmeans-0.6.0.dist-info/top_level.txt'
2021-09-02T07:27:13,593   adding 'pyckmeans-0.6.0.dist-info/RECORD'
2021-09-02T07:27:13,596   removing build/bdist.linux-armv7l/wheel
2021-09-02T07:27:13,686   Building wheel for pyckmeans (setup.py): finished with status 'done'
2021-09-02T07:27:13,689   Created wheel for pyckmeans: filename=pyckmeans-0.6.0-cp39-cp39-linux_armv7l.whl size=80902 sha256=b5dbf779d640ed3c25f34add52312bed08c9467dea3f92c45ae685d79d81373e
2021-09-02T07:27:13,690   Stored in directory: /tmp/pip-ephem-wheel-cache-8ma7lkkw/wheels/ec/53/7d/38b55fbfc60c3e8268de27ce409456f0d4632cc813fbef5048
2021-09-02T07:27:13,700 Successfully built pyckmeans
2021-09-02T07:27:13,707 Removed build tracker: '/tmp/pip-req-tracker-5rdsmf1s'