2021-09-02T07:47:34,478 Created temporary directory: /tmp/pip-ephem-wheel-cache-kojn5vuf
2021-09-02T07:47:34,484 Created temporary directory: /tmp/pip-req-tracker-ld09fmei
2021-09-02T07:47:34,485 Initialized build tracking at /tmp/pip-req-tracker-ld09fmei
2021-09-02T07:47:34,486 Created build tracker: /tmp/pip-req-tracker-ld09fmei
2021-09-02T07:47:34,486 Entered build tracker: /tmp/pip-req-tracker-ld09fmei
2021-09-02T07:47:34,488 Created temporary directory: /tmp/pip-wheel-z5myx3f9
2021-09-02T07:47:34,559 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-02T07:47:34,562 2 location(s) to search for versions of damona:
2021-09-02T07:47:34,562 * https://pypi.org/simple/damona/
2021-09-02T07:47:34,562 * https://www.piwheels.org/simple/damona/
2021-09-02T07:47:34,563 Fetching project page and analyzing links: https://pypi.org/simple/damona/
2021-09-02T07:47:34,565 Getting page https://pypi.org/simple/damona/
2021-09-02T07:47:34,569 Found index url https://pypi.org/simple
2021-09-02T07:47:34,908   Found link https://files.pythonhosted.org/packages/cd/9e/27ac1c5e27caa58f2d161dff75c5c4cdd92670440b07e7709802a9459b9c/damona-0.1.0.tar.gz#sha256=ffd1316e321796f0fa5a56b54f75dd4f5d927ecf0bc9c1a336f160f038ae6890 (from https://pypi.org/simple/damona/), version: 0.1.0
2021-09-02T07:47:34,909   Found link https://files.pythonhosted.org/packages/c9/20/7fe4d2f1c34300ed845a3b033a8cd8b3de72b82a25599330b10e2317ca48/damona-0.1.1.tar.gz#sha256=b5c70b83f51e4d32f2f3dda532abf3713a177b8e5ef7a0b26a44a801a0313236 (from https://pypi.org/simple/damona/), version: 0.1.1
2021-09-02T07:47:34,910   Found link https://files.pythonhosted.org/packages/36/9b/153b2e8849b6cf3b78ac13c3e30fbd4f1774c31b7b34cb849eb3a14bf69c/damona-0.2.0.tar.gz#sha256=6023b50d62eb18c216383a96021bf88cdf651ebc741397892b74bc49d642bdc1 (from https://pypi.org/simple/damona/), version: 0.2.0
2021-09-02T07:47:34,911   Found link https://files.pythonhosted.org/packages/5d/85/e936fbc729383625e399b7dabd3238995c915084986ec573588855c921ee/damona-0.2.1.tar.gz#sha256=69aa6cb1042ad0bf06363f68867de0fec1be4cf717d73574829d15967fadf019 (from https://pypi.org/simple/damona/), version: 0.2.1
2021-09-02T07:47:34,912   Found link https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22 (from https://pypi.org/simple/damona/), version: 0.2.2
2021-09-02T07:47:34,913   Found link https://files.pythonhosted.org/packages/2a/2f/3eca4d23aad1c0df2a1f708f49fd68de86b47fb3ff0b7270182074adbe24/damona-0.3.0.tar.gz#sha256=d87f56f4c50b9f87c6ef42a8c2ee9642e404889894524acd879dbfa301d88477 (from https://pypi.org/simple/damona/), version: 0.3.0
2021-09-02T07:47:34,913   Found link https://files.pythonhosted.org/packages/a4/85/cf3ba30aadaf7e322c200ff61874eb24a3ded6d64ad308d15760d26338f1/damona-0.3.1.tar.gz#sha256=a99d48dcfb750e079771ae08e93ade1b0223cc08744cc65bf5d9623771c74439 (from https://pypi.org/simple/damona/), version: 0.3.1
2021-09-02T07:47:34,914   Found link https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz#sha256=533275af540923fe2ff8a67b0ee49852cfa322880906e32461b79019aecf444e (from https://pypi.org/simple/damona/), version: 0.4.0
2021-09-02T07:47:34,915   Found link https://files.pythonhosted.org/packages/66/87/cc314bac96ca0afc29e95d91a07d70c56df5c37cb4209f8bfc4eb959418a/damona-0.4.1.tar.gz#sha256=cc5f816a84aca53cae91d7c851a2023bbea9f9f6bf5c8a3f4ac2a3d5f7588340 (from https://pypi.org/simple/damona/), version: 0.4.1
2021-09-02T07:47:34,916   Found link https://files.pythonhosted.org/packages/50/5a/2b91d89732ad7eabd61d2060de0ecc94c4a04c25999f199d2cb93ff943e5/damona-0.4.2.tar.gz#sha256=13f160a7c327acad47e006164bd84e766c94e36f50fe0eef3617a0031b1a2a5f (from https://pypi.org/simple/damona/), version: 0.4.2
2021-09-02T07:47:34,917   Found link https://files.pythonhosted.org/packages/e5/d8/0d4fe942e4a6dd2b5a45ac16a038f99dbea115dde61c41aec5f2815ef2a6/damona-0.4.3.tar.gz#sha256=ccd9e632ac9e87e2dd4774cad490a80de8c91391ca9f1f42ca44f27a41782edc (from https://pypi.org/simple/damona/), version: 0.4.3
2021-09-02T07:47:34,918   Found link https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz#sha256=6742de042d81a26a288ad91fb2824fd5cede8f6f2d593238ab65ef88ddb85108 (from https://pypi.org/simple/damona/), version: 0.5.0
2021-09-02T07:47:34,919   Found link https://files.pythonhosted.org/packages/73/65/3e225ffc73fe435cc40b8658c3838e18b66bac46c2f2227c858c1751b485/damona-0.5.1.tar.gz#sha256=3d74601d8dc7e8fea702c5932b8eb699b1e0496e01cd714051e05a63de254694 (from https://pypi.org/simple/damona/), version: 0.5.1
2021-09-02T07:47:34,920   Found link https://files.pythonhosted.org/packages/09/b4/f0570169435b2629cac80df83e3140b82a480cdfd795f8f6c54c4c36d53e/damona-0.5.2.tar.gz#sha256=1e6f0abd77e643ef7f78e226078fd426d4948fe4b4d04689aacb798b985b0145 (from https://pypi.org/simple/damona/), version: 0.5.2
2021-09-02T07:47:34,921   Found link https://files.pythonhosted.org/packages/34/85/cce2fff4d9e5c90ac7dc665db03e0c134fd23930d6fe7168e3fd48a7899a/damona-0.5.3.tar.gz#sha256=74f6d29827606ee27123183a7eae6e19392d705c5637a1517abfb802ccf5e1ed (from https://pypi.org/simple/damona/), version: 0.5.3
2021-09-02T07:47:34,922 Fetching project page and analyzing links: https://www.piwheels.org/simple/damona/
2021-09-02T07:47:34,922 Getting page https://www.piwheels.org/simple/damona/
2021-09-02T07:47:34,925 Found index url https://www.piwheels.org/simple
2021-09-02T07:47:35,098   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.2.2-py3-none-any.whl#sha256=9165891e105689e76d95ddf46067837a1ee8b13d1d3af36b5af846c1b8ee4b92 (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,099   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.0-py3-none-any.whl#sha256=b9bad2b5e81d6bdca4b895a2d7dfcd19a5450509889904d9840f447a3a5a5f11 (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,100   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.1-py3-none-any.whl#sha256=934799d1cf5a920bc199416dc79952e268359cc4ad20d561571fd85e4c2d84dc (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,100   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.0-py3-none-any.whl#sha256=131eb91e5a14664d9a717ad2a12025787ed02a761336318d57de6076bbfe0695 (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,101   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.1-py3-none-any.whl#sha256=87fafcd2a349a2c12e3f28edb48015a402a3e50f89c4da8072167483d0d7a200 (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,101   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.2-py3-none-any.whl#sha256=326ee5f5e021f463128cc57ff6f3ff6129f46271dfaf4f823a5645f2e94d7aa4 (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,102   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.3-py3-none-any.whl#sha256=7b05aa70e5bb4664074b7b3d9b63873f9aa72e29217bf7a971614685c338107e (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,102   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.0-py3-none-any.whl#sha256=2b105c2097bf8572e7d57f7b842123852413d4d1266886b21d4f1e94b0d25109 (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,103   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.1-py3-none-any.whl#sha256=5a3fb6b370b13c5085238e60671c083d51b2afa8ca94314f8c382b46b4fecc0a (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,103   Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.2-py3-none-any.whl#sha256=96b9d98f2692a8ed1bd3d044f9cbd041d99762fcc2003f9e4c657e7bb885a061 (from https://www.piwheels.org/simple/damona/)
2021-09-02T07:47:35,139 Given no hashes to check 1 links for project 'damona': discarding no candidates
2021-09-02T07:47:35,171 Collecting damona==0.5.3
2021-09-02T07:47:35,175   Created temporary directory: /tmp/pip-unpack-3bkbs797
2021-09-02T07:47:35,393   Downloading damona-0.5.3.tar.gz (47 kB)
2021-09-02T07:47:35,941   Added damona==0.5.3 from https://files.pythonhosted.org/packages/34/85/cce2fff4d9e5c90ac7dc665db03e0c134fd23930d6fe7168e3fd48a7899a/damona-0.5.3.tar.gz#sha256=74f6d29827606ee27123183a7eae6e19392d705c5637a1517abfb802ccf5e1ed to build tracker '/tmp/pip-req-tracker-ld09fmei'
2021-09-02T07:47:35,943     Running setup.py (path:/tmp/pip-wheel-z5myx3f9/damona_58c80a16429f42fab5e41d4e3786c7a8/setup.py) egg_info for package damona
2021-09-02T07:47:35,944     Created temporary directory: /tmp/pip-pip-egg-info-hc9ci0zj
2021-09-02T07:47:35,945     Running command python setup.py egg_info
2021-09-02T07:47:38,326     running egg_info
2021-09-02T07:47:38,332     creating /tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info
2021-09-02T07:47:38,335     writing requirements to /tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/requires.txt
2021-09-02T07:47:38,338     writing top-level names to /tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/top_level.txt
2021-09-02T07:47:38,340     writing /tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/PKG-INFO
2021-09-02T07:47:38,348     writing entry points to /tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/entry_points.txt
2021-09-02T07:47:38,351     writing dependency_links to /tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/dependency_links.txt
2021-09-02T07:47:38,355     writing manifest file '/tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/SOURCES.txt'
2021-09-02T07:47:38,764     reading manifest file '/tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/SOURCES.txt'
2021-09-02T07:47:38,768     reading manifest template 'MANIFEST.in'
2021-09-02T07:47:38,771     warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-02T07:47:38,773     warning: no previously-included files matching '*pyc' found under directory '*'
2021-09-02T07:47:38,789     writing manifest file '/tmp/pip-pip-egg-info-hc9ci0zj/damona.egg-info/SOURCES.txt'
2021-09-02T07:47:38,950   Source in /tmp/pip-wheel-z5myx3f9/damona_58c80a16429f42fab5e41d4e3786c7a8 has version 0.5.3, which satisfies requirement damona==0.5.3 from https://files.pythonhosted.org/packages/34/85/cce2fff4d9e5c90ac7dc665db03e0c134fd23930d6fe7168e3fd48a7899a/damona-0.5.3.tar.gz#sha256=74f6d29827606ee27123183a7eae6e19392d705c5637a1517abfb802ccf5e1ed
2021-09-02T07:47:38,952   Removed damona==0.5.3 from https://files.pythonhosted.org/packages/34/85/cce2fff4d9e5c90ac7dc665db03e0c134fd23930d6fe7168e3fd48a7899a/damona-0.5.3.tar.gz#sha256=74f6d29827606ee27123183a7eae6e19392d705c5637a1517abfb802ccf5e1ed from build tracker '/tmp/pip-req-tracker-ld09fmei'
2021-09-02T07:47:38,966 Created temporary directory: /tmp/pip-unpack-qzrgf_qw
2021-09-02T07:47:38,967 Building wheels for collected packages: damona
2021-09-02T07:47:38,976   Created temporary directory: /tmp/pip-wheel-os_q8z0n
2021-09-02T07:47:38,977   Building wheel for damona (setup.py): started
2021-09-02T07:47:38,977   Destination directory: /tmp/pip-wheel-os_q8z0n
2021-09-02T07:47:38,978   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-z5myx3f9/damona_58c80a16429f42fab5e41d4e3786c7a8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-z5myx3f9/damona_58c80a16429f42fab5e41d4e3786c7a8/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-os_q8z0n
2021-09-02T07:47:41,302   running bdist_wheel
2021-09-02T07:47:41,309   running build
2021-09-02T07:47:41,309   running build_py
2021-09-02T07:47:41,627   creating build
2021-09-02T07:47:41,628   creating build/lib
2021-09-02T07:47:41,629   creating build/lib/damona
2021-09-02T07:47:41,632   copying damona/common.py -> build/lib/damona
2021-09-02T07:47:41,639   copying damona/builders.py -> build/lib/damona
2021-09-02T07:47:41,645   copying damona/registry.py -> build/lib/damona
2021-09-02T07:47:41,651   copying damona/config.py -> build/lib/damona
2021-09-02T07:47:41,655   copying damona/colors.py -> build/lib/damona
2021-09-02T07:47:41,660   copying damona/script.py -> build/lib/damona
2021-09-02T07:47:41,668   copying damona/__init__.py -> build/lib/damona
2021-09-02T07:47:41,674   copying damona/install.py -> build/lib/damona
2021-09-02T07:47:41,681   copying damona/environ.py -> build/lib/damona
2021-09-02T07:47:41,691   creating build/lib/damona/shell
2021-09-02T07:47:41,693   copying damona/shell/__init__.py -> build/lib/damona/shell
2021-09-02T07:47:41,700   creating build/lib/damona/recipes
2021-09-02T07:47:41,702   copying damona/recipes/__init__.py -> build/lib/damona/recipes
2021-09-02T07:47:41,768   creating build/lib/damona/recipes/quast
2021-09-02T07:47:41,770   copying damona/recipes/quast/Singularity.quast_5.0.2 -> build/lib/damona/recipes/quast
2021-09-02T07:47:41,775   creating build/lib/damona/recipes/minimap2
2021-09-02T07:47:41,776   copying damona/recipes/minimap2/Singularity.minimap2_2.17.0 -> build/lib/damona/recipes/minimap2
2021-09-02T07:47:41,781   creating build/lib/damona/recipes/rtools
2021-09-02T07:47:41,783   copying damona/recipes/rtools/Singularity.Rtools_1.1.0 -> build/lib/damona/recipes/rtools
2021-09-02T07:47:41,788   copying damona/recipes/rtools/Singularity.Rtools_1.0.0 -> build/lib/damona/recipes/rtools
2021-09-02T07:47:41,795   creating build/lib/damona/recipes/R
2021-09-02T07:47:41,798   copying damona/recipes/R/Singularity.R_3.6.3 -> build/lib/damona/recipes/R
2021-09-02T07:47:41,805   copying damona/recipes/R/Singularity.R_4.0.2 -> build/lib/damona/recipes/R
2021-09-02T07:47:41,811   creating build/lib/damona/recipes/rnadiff
2021-09-02T07:47:41,814   copying damona/recipes/rnadiff/Singularity.rnadiff_1.7.1 -> build/lib/damona/recipes/rnadiff
2021-09-02T07:47:41,820   creating build/lib/damona/recipes/art
2021-09-02T07:47:41,823   copying damona/recipes/art/Singularity.art_3.11.14 -> build/lib/damona/recipes/art
2021-09-02T07:47:41,829   creating build/lib/damona/recipes/canu
2021-09-02T07:47:41,831   copying damona/recipes/canu/Singularity.canu_1.6.0 -> build/lib/damona/recipes/canu
2021-09-02T07:47:41,838   copying damona/recipes/canu/Singularity.canu_1.8.0 -> build/lib/damona/recipes/canu
2021-09-02T07:47:41,844   creating build/lib/damona/recipes/ucsc
2021-09-02T07:47:41,846   copying damona/recipes/ucsc/Singularity.ucsc_0.1.0 -> build/lib/damona/recipes/ucsc
2021-09-02T07:47:41,852   creating build/lib/damona/recipes/kraken
2021-09-02T07:47:41,854   copying damona/recipes/kraken/Singularity.kraken_1.1 -> build/lib/damona/recipes/kraken
2021-09-02T07:47:41,859   copying damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/lib/damona/recipes/kraken
2021-09-02T07:47:41,863   creating build/lib/damona/recipes/sequana_perl_tools
2021-09-02T07:47:41,865   copying damona/recipes/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/lib/damona/recipes/sequana_perl_tools
2021-09-02T07:47:41,871   creating build/lib/damona/recipes/damona
2021-09-02T07:47:41,874   copying damona/recipes/damona/Singularity.damona_0.3.0 -> build/lib/damona/recipes/damona
2021-09-02T07:47:41,881   copying damona/recipes/damona/Singularity.damona_0.4.2 -> build/lib/damona/recipes/damona
2021-09-02T07:47:41,887   creating build/lib/damona/recipes/conda
2021-09-02T07:47:41,889   copying damona/recipes/conda/Singularity.conda_4.7.12 -> build/lib/damona/recipes/conda
2021-09-02T07:47:41,895   copying damona/recipes/conda/Singularity.conda_4.9.2 -> build/lib/damona/recipes/conda
2021-09-02T07:47:41,899   creating build/lib/damona/recipes/rnaseqc
2021-09-02T07:47:41,901   copying damona/recipes/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/lib/damona/recipes/rnaseqc
2021-09-02T07:47:41,906   creating build/lib/damona/recipes/sequana_tools
2021-09-02T07:47:41,907   copying damona/recipes/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/lib/damona/recipes/sequana_tools
2021-09-02T07:47:41,914   copying damona/recipes/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/lib/damona/recipes/sequana_tools
2021-09-02T07:47:41,920   copying damona/recipes/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/lib/damona/recipes/sequana_tools
2021-09-02T07:47:41,926   creating build/lib/damona/recipes/trf
2021-09-02T07:47:41,929   copying damona/recipes/trf/Singularity.trf_4.10.0 -> build/lib/damona/recipes/trf
2021-09-02T07:47:41,935   copying damona/recipes/trf/Singularity.trf_4.09 -> build/lib/damona/recipes/trf
2021-09-02T07:47:41,942   creating build/lib/damona/recipes/fastqc
2021-09-02T07:47:41,944   copying damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/lib/damona/recipes/fastqc
2021-09-02T07:47:41,952   copying damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/lib/damona/recipes/fastqc
2021-09-02T07:47:41,959   creating build/lib/damona/recipes/prokka
2021-09-02T07:47:41,961   copying damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/lib/damona/recipes/prokka
2021-09-02T07:47:41,968   creating build/lib/damona/recipes/falco
2021-09-02T07:47:41,970   copying damona/recipes/falco/Singularity.falco_0.2.1 -> build/lib/damona/recipes/falco
2021-09-02T07:47:41,975   creating build/lib/damona/recipes/bcl2fastq
2021-09-02T07:47:41,977   copying damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/lib/damona/recipes/bcl2fastq
2021-09-02T07:47:41,982   creating build/lib/damona/recipes/phantompeakqualtools
2021-09-02T07:47:41,983   copying damona/recipes/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/lib/damona/recipes/phantompeakqualtools
2021-09-02T07:47:41,988   creating build/lib/damona/recipes/graphviz
2021-09-02T07:47:41,990   copying damona/recipes/graphviz/Singularity.graphviz_2.43.0 -> build/lib/damona/recipes/graphviz
2021-09-02T07:47:41,996   creating build/lib/damona/recipes/gffread
2021-09-02T07:47:41,999   copying damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/lib/damona/recipes/gffread
2021-09-02T07:47:42,005   creating build/lib/damona/recipes/salmon
2021-09-02T07:47:42,007   copying damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/lib/damona/recipes/salmon
2021-09-02T07:47:42,014   copying damona/recipes/quast/registry.yaml -> build/lib/damona/recipes/quast
2021-09-02T07:47:42,020   copying damona/recipes/minimap2/registry.yaml -> build/lib/damona/recipes/minimap2
2021-09-02T07:47:42,026   copying damona/recipes/rtools/registry.yaml -> build/lib/damona/recipes/rtools
2021-09-02T07:47:42,032   copying damona/recipes/R/registry.yaml -> build/lib/damona/recipes/R
2021-09-02T07:47:42,036   copying damona/recipes/rnadiff/registry.yaml -> build/lib/damona/recipes/rnadiff
2021-09-02T07:47:42,041   copying damona/recipes/art/registry.yaml -> build/lib/damona/recipes/art
2021-09-02T07:47:42,045   copying damona/recipes/canu/registry.yaml -> build/lib/damona/recipes/canu
2021-09-02T07:47:42,049   copying damona/recipes/ucsc/registry.yaml -> build/lib/damona/recipes/ucsc
2021-09-02T07:47:42,055   copying damona/recipes/kraken/registry.yaml -> build/lib/damona/recipes/kraken
2021-09-02T07:47:42,061   copying damona/recipes/sequana_perl_tools/registry.yaml -> build/lib/damona/recipes/sequana_perl_tools
2021-09-02T07:47:42,067   creating build/lib/damona/recipes/hisat2
2021-09-02T07:47:42,069   copying damona/recipes/hisat2/registry.yaml -> build/lib/damona/recipes/hisat2
2021-09-02T07:47:42,076   copying damona/recipes/damona/registry.yaml -> build/lib/damona/recipes/damona
2021-09-02T07:47:42,082   copying damona/recipes/conda/registry.yaml -> build/lib/damona/recipes/conda
2021-09-02T07:47:42,088   copying damona/recipes/rnaseqc/registry.yaml -> build/lib/damona/recipes/rnaseqc
2021-09-02T07:47:42,095   copying damona/recipes/sequana_tools/registry.yaml -> build/lib/damona/recipes/sequana_tools
2021-09-02T07:47:42,101   copying damona/recipes/trf/registry.yaml -> build/lib/damona/recipes/trf
2021-09-02T07:47:42,107   copying damona/recipes/fastqc/registry.yaml -> build/lib/damona/recipes/fastqc
2021-09-02T07:47:42,113   copying damona/recipes/prokka/registry.yaml -> build/lib/damona/recipes/prokka
2021-09-02T07:47:42,118   copying damona/recipes/falco/registry.yaml -> build/lib/damona/recipes/falco
2021-09-02T07:47:42,122   copying damona/recipes/bcl2fastq/registry.yaml -> build/lib/damona/recipes/bcl2fastq
2021-09-02T07:47:42,126   copying damona/recipes/phantompeakqualtools/registry.yaml -> build/lib/damona/recipes/phantompeakqualtools
2021-09-02T07:47:42,131   copying damona/recipes/graphviz/registry.yaml -> build/lib/damona/recipes/graphviz
2021-09-02T07:47:42,136   copying damona/recipes/gffread/registry.yaml -> build/lib/damona/recipes/gffread
2021-09-02T07:47:42,142   copying damona/recipes/salmon/registry.yaml -> build/lib/damona/recipes/salmon
2021-09-02T07:47:42,157   installing to build/bdist.linux-armv7l/wheel
2021-09-02T07:47:42,158   running install
2021-09-02T07:47:42,160   running install_lib
2021-09-02T07:47:42,168   creating build/bdist.linux-armv7l
2021-09-02T07:47:42,168   creating build/bdist.linux-armv7l/wheel
2021-09-02T07:47:42,172   creating build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,174   copying build/lib/damona/common.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,180   copying build/lib/damona/builders.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,184   copying build/lib/damona/registry.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,189   copying build/lib/damona/config.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,194   copying build/lib/damona/colors.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,197   copying build/lib/damona/script.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,205   copying build/lib/damona/__init__.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,212   creating build/bdist.linux-armv7l/wheel/damona/shell
2021-09-02T07:47:42,214   copying build/lib/damona/shell/__init__.py -> build/bdist.linux-armv7l/wheel/damona/shell
2021-09-02T07:47:42,219   copying build/lib/damona/install.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,226   copying build/lib/damona/environ.py -> build/bdist.linux-armv7l/wheel/damona
2021-09-02T07:47:42,236   creating build/bdist.linux-armv7l/wheel/damona/recipes
2021-09-02T07:47:42,240   creating build/bdist.linux-armv7l/wheel/damona/recipes/quast
2021-09-02T07:47:42,242   copying build/lib/damona/recipes/quast/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/quast
2021-09-02T07:47:42,248   copying build/lib/damona/recipes/quast/Singularity.quast_5.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/quast
2021-09-02T07:47:42,255   creating build/bdist.linux-armv7l/wheel/damona/recipes/minimap2
2021-09-02T07:47:42,257   copying build/lib/damona/recipes/minimap2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/minimap2
2021-09-02T07:47:42,263   copying build/lib/damona/recipes/minimap2/Singularity.minimap2_2.17.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/minimap2
2021-09-02T07:47:42,269   creating build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-02T07:47:42,272   copying build/lib/damona/recipes/rtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-02T07:47:42,277   copying build/lib/damona/recipes/rtools/Singularity.Rtools_1.1.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-02T07:47:42,283   copying build/lib/damona/recipes/rtools/Singularity.Rtools_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rtools
2021-09-02T07:47:42,289   creating build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-02T07:47:42,292   copying build/lib/damona/recipes/R/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-02T07:47:42,297   copying build/lib/damona/recipes/R/Singularity.R_3.6.3 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-02T07:47:42,303   copying build/lib/damona/recipes/R/Singularity.R_4.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2021-09-02T07:47:42,309   creating build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2021-09-02T07:47:42,312   copying build/lib/damona/recipes/rnadiff/Singularity.rnadiff_1.7.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2021-09-02T07:47:42,317   copying build/lib/damona/recipes/rnadiff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2021-09-02T07:47:42,324   creating build/bdist.linux-armv7l/wheel/damona/recipes/art
2021-09-02T07:47:42,326   copying build/lib/damona/recipes/art/Singularity.art_3.11.14 -> build/bdist.linux-armv7l/wheel/damona/recipes/art
2021-09-02T07:47:42,332   copying build/lib/damona/recipes/art/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/art
2021-09-02T07:47:42,339   creating build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-02T07:47:42,341   copying build/lib/damona/recipes/canu/Singularity.canu_1.6.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-02T07:47:42,345   copying build/lib/damona/recipes/canu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-02T07:47:42,349   copying build/lib/damona/recipes/canu/Singularity.canu_1.8.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/canu
2021-09-02T07:47:42,354   creating build/bdist.linux-armv7l/wheel/damona/recipes/ucsc
2021-09-02T07:47:42,355   copying build/lib/damona/recipes/ucsc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/ucsc
2021-09-02T07:47:42,360   copying build/lib/damona/recipes/ucsc/Singularity.ucsc_0.1.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/ucsc
2021-09-02T07:47:42,366   creating build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-02T07:47:42,369   copying build/lib/damona/recipes/kraken/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-02T07:47:42,374   copying build/lib/damona/recipes/kraken/Singularity.kraken_1.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-02T07:47:42,380   copying build/lib/damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2021-09-02T07:47:42,385   copying build/lib/damona/recipes/__init__.py -> build/bdist.linux-armv7l/wheel/damona/recipes
2021-09-02T07:47:42,391   creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_perl_tools
2021-09-02T07:47:42,393   copying build/lib/damona/recipes/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_perl_tools
2021-09-02T07:47:42,399   copying build/lib/damona/recipes/sequana_perl_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_perl_tools
2021-09-02T07:47:42,405   creating build/bdist.linux-armv7l/wheel/damona/recipes/hisat2
2021-09-02T07:47:42,406   copying build/lib/damona/recipes/hisat2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/hisat2
2021-09-02T07:47:42,412   creating build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-02T07:47:42,413   copying build/lib/damona/recipes/damona/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-02T07:47:42,418   copying build/lib/damona/recipes/damona/Singularity.damona_0.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-02T07:47:42,422   copying build/lib/damona/recipes/damona/Singularity.damona_0.4.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2021-09-02T07:47:42,429   creating build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-02T07:47:42,431   copying build/lib/damona/recipes/conda/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-02T07:47:42,437   copying build/lib/damona/recipes/conda/Singularity.conda_4.7.12 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-02T07:47:42,442   copying build/lib/damona/recipes/conda/Singularity.conda_4.9.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2021-09-02T07:47:42,449   creating build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc
2021-09-02T07:47:42,452   copying build/lib/damona/recipes/rnaseqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc
2021-09-02T07:47:42,458   copying build/lib/damona/recipes/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc
2021-09-02T07:47:42,465   creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-02T07:47:42,467   copying build/lib/damona/recipes/sequana_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-02T07:47:42,473   copying build/lib/damona/recipes/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-02T07:47:42,479   copying build/lib/damona/recipes/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-02T07:47:42,484   copying build/lib/damona/recipes/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools
2021-09-02T07:47:42,492   creating build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-02T07:47:42,494   copying build/lib/damona/recipes/trf/Singularity.trf_4.10.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-02T07:47:42,500   copying build/lib/damona/recipes/trf/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-02T07:47:42,505   copying build/lib/damona/recipes/trf/Singularity.trf_4.09 -> build/bdist.linux-armv7l/wheel/damona/recipes/trf
2021-09-02T07:47:42,512   creating build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-02T07:47:42,514   copying build/lib/damona/recipes/fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-02T07:47:42,520   copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-02T07:47:42,525   copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2021-09-02T07:47:42,532   creating build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2021-09-02T07:47:42,534   copying build/lib/damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2021-09-02T07:47:42,540   copying build/lib/damona/recipes/prokka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2021-09-02T07:47:42,547   creating build/bdist.linux-armv7l/wheel/damona/recipes/falco
2021-09-02T07:47:42,550   copying build/lib/damona/recipes/falco/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/falco
2021-09-02T07:47:42,555   copying build/lib/damona/recipes/falco/Singularity.falco_0.2.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/falco
2021-09-02T07:47:42,562   creating build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2021-09-02T07:47:42,565   copying build/lib/damona/recipes/bcl2fastq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2021-09-02T07:47:42,571   copying build/lib/damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2021-09-02T07:47:42,577   creating build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools
2021-09-02T07:47:42,580   copying build/lib/damona/recipes/phantompeakqualtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools
2021-09-02T07:47:42,586   copying build/lib/damona/recipes/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools
2021-09-02T07:47:42,593   creating build/bdist.linux-armv7l/wheel/damona/recipes/graphviz
2021-09-02T07:47:42,595   copying build/lib/damona/recipes/graphviz/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/graphviz
2021-09-02T07:47:42,601   copying build/lib/damona/recipes/graphviz/Singularity.graphviz_2.43.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/graphviz
2021-09-02T07:47:42,608   creating build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2021-09-02T07:47:42,611   copying build/lib/damona/recipes/gffread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2021-09-02T07:47:42,616   copying build/lib/damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2021-09-02T07:47:42,623   creating build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2021-09-02T07:47:42,626   copying build/lib/damona/recipes/salmon/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2021-09-02T07:47:42,631   copying build/lib/damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2021-09-02T07:47:42,636   running install_egg_info
2021-09-02T07:47:42,650   running egg_info
2021-09-02T07:47:42,652   writing top-level names to damona.egg-info/top_level.txt
2021-09-02T07:47:42,655   writing entry points to damona.egg-info/entry_points.txt
2021-09-02T07:47:42,657   writing requirements to damona.egg-info/requires.txt
2021-09-02T07:47:42,659   writing dependency_links to damona.egg-info/dependency_links.txt
2021-09-02T07:47:42,662   writing damona.egg-info/PKG-INFO
2021-09-02T07:47:42,685   reading manifest file 'damona.egg-info/SOURCES.txt'
2021-09-02T07:47:42,694   reading manifest template 'MANIFEST.in'
2021-09-02T07:47:42,697   warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-02T07:47:42,700   warning: no previously-included files matching '*pyc' found under directory '*'
2021-09-02T07:47:42,719   writing manifest file 'damona.egg-info/SOURCES.txt'
2021-09-02T07:47:42,723   Copying damona.egg-info to build/bdist.linux-armv7l/wheel/damona-0.5.3-py3.5.egg-info
2021-09-02T07:47:42,759   running install_scripts
2021-09-02T07:47:42,898   creating build/bdist.linux-armv7l/wheel/damona-0.5.3.dist-info/WHEEL
2021-09-02T07:47:43,443   Building wheel for damona (setup.py): finished with status 'done'
2021-09-02T07:47:43,448   Created wheel for damona: filename=damona-0.5.3-py3-none-any.whl size=68812 sha256=c4e616966557b5bdf1adb7658f29a695e17d0f74b00c292ec912da0a37907ba8
2021-09-02T07:47:43,449   Stored in directory: /tmp/pip-ephem-wheel-cache-kojn5vuf/wheels/95/04/5c/1c049785d9bea32231d153b32ed11ac9f4c9e0a6e091e6644a
2021-09-02T07:47:43,475 Successfully built damona
2021-09-02T07:47:43,490 Removed build tracker: '/tmp/pip-req-tracker-ld09fmei'