2021-09-08T17:22:40,345 Created temporary directory: /tmp/pip-ephem-wheel-cache-2sjg2p4o
2021-09-08T17:22:40,352 Created temporary directory: /tmp/pip-req-tracker-cy0tia2a
2021-09-08T17:22:40,353 Initialized build tracking at /tmp/pip-req-tracker-cy0tia2a
2021-09-08T17:22:40,353 Created build tracker: /tmp/pip-req-tracker-cy0tia2a
2021-09-08T17:22:40,353 Entered build tracker: /tmp/pip-req-tracker-cy0tia2a
2021-09-08T17:22:40,355 Created temporary directory: /tmp/pip-wheel-eybj94sb
2021-09-08T17:22:40,420 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-08T17:22:40,423 2 location(s) to search for versions of novartis-pisces:
2021-09-08T17:22:40,423 * https://pypi.org/simple/novartis-pisces/
2021-09-08T17:22:40,423 * https://www.piwheels.org/simple/novartis-pisces/
2021-09-08T17:22:40,424 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2021-09-08T17:22:40,426 Getting page https://pypi.org/simple/novartis-pisces/
2021-09-08T17:22:40,430 Found index url https://pypi.org/simple
2021-09-08T17:22:40,762   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2021-09-08T17:22:40,763   Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2
2021-09-08T17:22:40,764   Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3
2021-09-08T17:22:40,765   Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1
2021-09-08T17:22:40,765   Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4
2021-09-08T17:22:40,766   Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2
2021-09-08T17:22:40,767 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/
2021-09-08T17:22:40,768 Getting page https://www.piwheels.org/simple/novartis-pisces/
2021-09-08T17:22:40,770 Found index url https://www.piwheels.org/simple
2021-09-08T17:22:40,926   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-08T17:22:40,927   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-08T17:22:40,928   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-08T17:22:40,928   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-08T17:22:40,929   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-08T17:22:40,961 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2021-09-08T17:22:40,992 Collecting novartis-pisces==0.1.4.2
2021-09-08T17:22:40,996   Created temporary directory: /tmp/pip-unpack-fb6p6u1t
2021-09-08T17:22:41,779   Downloading novartis-pisces-0.1.4.2.tar.gz (18.4 MB)
2021-09-08T17:22:50,370   Added novartis-pisces==0.1.4.2 from https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 to build tracker '/tmp/pip-req-tracker-cy0tia2a'
2021-09-08T17:22:50,376     Running setup.py (path:/tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61/setup.py) egg_info for package novartis-pisces
2021-09-08T17:22:50,378     Created temporary directory: /tmp/pip-pip-egg-info-0as70noj
2021-09-08T17:22:50,379     Running command python setup.py egg_info
2021-09-08T17:22:55,233     DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-09-08T17:22:58,318     running egg_info
2021-09-08T17:22:58,325     creating /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info
2021-09-08T17:22:58,327     writing dependency_links to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/dependency_links.txt
2021-09-08T17:22:58,330     writing requirements to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/requires.txt
2021-09-08T17:22:58,333     writing /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/PKG-INFO
2021-09-08T17:22:58,338     writing top-level names to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/top_level.txt
2021-09-08T17:22:58,340     writing entry points to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/entry_points.txt
2021-09-08T17:22:58,344     writing manifest file '/tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/SOURCES.txt'
2021-09-08T17:22:58,725     reading manifest file '/tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/SOURCES.txt'
2021-09-08T17:22:58,729     reading manifest template 'MANIFEST.in'
2021-09-08T17:22:58,756     writing manifest file '/tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/SOURCES.txt'
2021-09-08T17:22:58,918   Source in /tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61 has version 0.1.4.2, which satisfies requirement novartis-pisces==0.1.4.2 from https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938
2021-09-08T17:22:58,920   Removed novartis-pisces==0.1.4.2 from https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 from build tracker '/tmp/pip-req-tracker-cy0tia2a'
2021-09-08T17:22:58,928 Created temporary directory: /tmp/pip-unpack-c5xzxfs3
2021-09-08T17:22:58,929 Building wheels for collected packages: novartis-pisces
2021-09-08T17:22:58,938   Created temporary directory: /tmp/pip-wheel-120ez9gk
2021-09-08T17:22:58,939   Building wheel for novartis-pisces (setup.py): started
2021-09-08T17:22:58,940   Destination directory: /tmp/pip-wheel-120ez9gk
2021-09-08T17:22:58,940   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-120ez9gk
2021-09-08T17:23:01,646   running bdist_wheel
2021-09-08T17:23:01,653   running build
2021-09-08T17:23:01,654   running build_py
2021-09-08T17:23:01,976   creating build
2021-09-08T17:23:01,977   creating build/lib
2021-09-08T17:23:01,978   creating build/lib/pisces
2021-09-08T17:23:01,981   copying pisces/cli.py -> build/lib/pisces
2021-09-08T17:23:01,986   copying pisces/index.py -> build/lib/pisces
2021-09-08T17:23:01,992   copying pisces/fastq.py -> build/lib/pisces
2021-09-08T17:23:01,997   copying pisces/__init__.py -> build/lib/pisces
2021-09-08T17:23:02,002   copying pisces/run.py -> build/lib/pisces
2021-09-08T17:23:02,009   copying pisces/qc.py -> build/lib/pisces
2021-09-08T17:23:02,015   copying pisces/submit.py -> build/lib/pisces
2021-09-08T17:23:02,021   running egg_info
2021-09-08T17:23:02,033   writing novartis_pisces.egg-info/PKG-INFO
2021-09-08T17:23:02,038   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2021-09-08T17:23:02,041   writing requirements to novartis_pisces.egg-info/requires.txt
2021-09-08T17:23:02,044   writing top-level names to novartis_pisces.egg-info/top_level.txt
2021-09-08T17:23:02,048   writing entry points to novartis_pisces.egg-info/entry_points.txt
2021-09-08T17:23:02,086   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-09-08T17:23:02,116   reading manifest template 'MANIFEST.in'
2021-09-08T17:23:02,144   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-09-08T17:23:02,154   copying pisces/config.json -> build/lib/pisces
2021-09-08T17:23:02,159   creating build/lib/pisces/R
2021-09-08T17:23:02,160   copying pisces/R/.Rprofile -> build/lib/pisces/R
2021-09-08T17:23:02,165   copying pisces/R/.gitignore -> build/lib/pisces/R
2021-09-08T17:23:02,169   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2021-09-08T17:23:02,178   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2021-09-08T17:23:02,184   creating build/lib/pisces/R/renv
2021-09-08T17:23:02,186   copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv
2021-09-08T17:23:02,194   creating build/lib/pisces/data
2021-09-08T17:23:02,196   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2021-09-08T17:23:02,207   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2021-09-08T17:23:02,216   creating build/lib/pisces/scripts
2021-09-08T17:23:02,218   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2021-09-08T17:23:02,227   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2021-09-08T17:23:02,235   creating build/lib/pisces/tests
2021-09-08T17:23:02,237   copying pisces/tests/test_cli.py -> build/lib/pisces/tests
2021-09-08T17:23:02,253   installing to build/bdist.linux-armv7l/wheel
2021-09-08T17:23:02,254   running install
2021-09-08T17:23:02,256   running install_lib
2021-09-08T17:23:02,263   creating build/bdist.linux-armv7l
2021-09-08T17:23:02,264   creating build/bdist.linux-armv7l/wheel
2021-09-08T17:23:02,268   creating build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,271   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-08T17:23:02,273   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-08T17:23:02,279   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-08T17:23:02,285   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,291   creating build/bdist.linux-armv7l/wheel/pisces/tests
2021-09-08T17:23:02,293   copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests
2021-09-08T17:23:02,299   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,307   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,312   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,319   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,326   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,334   creating build/bdist.linux-armv7l/wheel/pisces/R
2021-09-08T17:23:02,338   creating build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-09-08T17:23:02,340   copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-09-08T17:23:02,348   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-08T17:23:02,353   copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-08T17:23:02,358   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-08T17:23:02,367   copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-08T17:23:02,372   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,378   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-08T17:23:02,386   creating build/bdist.linux-armv7l/wheel/pisces/data
2021-09-08T17:23:02,389   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-09-08T17:23:02,397   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-09-08T17:23:02,406   running install_egg_info
2021-09-08T17:23:02,417   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.2-py3.5.egg-info
2021-09-08T17:23:02,445   running install_scripts
2021-09-08T17:23:02,546   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.2.dist-info/WHEEL
2021-09-08T17:23:02,876   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2021-09-08T17:23:02,880   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.4.2-py3-none-any.whl size=57397 sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1
2021-09-08T17:23:02,881   Stored in directory: /tmp/pip-ephem-wheel-cache-2sjg2p4o/wheels/5e/5b/55/6065c9b3ff764728321e10893babb069872ac81afd92b952b6
2021-09-08T17:23:02,899 Successfully built novartis-pisces
2021-09-08T17:23:02,914 Removed build tracker: '/tmp/pip-req-tracker-cy0tia2a'