2021-09-08T17:22:40,345 Created temporary directory: /tmp/pip-ephem-wheel-cache-2sjg2p4o 2021-09-08T17:22:40,352 Created temporary directory: /tmp/pip-req-tracker-cy0tia2a 2021-09-08T17:22:40,353 Initialized build tracking at /tmp/pip-req-tracker-cy0tia2a 2021-09-08T17:22:40,353 Created build tracker: /tmp/pip-req-tracker-cy0tia2a 2021-09-08T17:22:40,353 Entered build tracker: /tmp/pip-req-tracker-cy0tia2a 2021-09-08T17:22:40,355 Created temporary directory: /tmp/pip-wheel-eybj94sb 2021-09-08T17:22:40,420 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-09-08T17:22:40,423 2 location(s) to search for versions of novartis-pisces: 2021-09-08T17:22:40,423 * https://pypi.org/simple/novartis-pisces/ 2021-09-08T17:22:40,423 * https://www.piwheels.org/simple/novartis-pisces/ 2021-09-08T17:22:40,424 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/ 2021-09-08T17:22:40,426 Getting page https://pypi.org/simple/novartis-pisces/ 2021-09-08T17:22:40,430 Found index url https://pypi.org/simple 2021-09-08T17:22:40,762 Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1 2021-09-08T17:22:40,763 Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2 2021-09-08T17:22:40,764 Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3 2021-09-08T17:22:40,765 Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1 2021-09-08T17:22:40,765 Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4 2021-09-08T17:22:40,766 Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2 2021-09-08T17:22:40,767 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/ 2021-09-08T17:22:40,768 Getting page https://www.piwheels.org/simple/novartis-pisces/ 2021-09-08T17:22:40,770 Found index url https://www.piwheels.org/simple 2021-09-08T17:22:40,926 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/) 2021-09-08T17:22:40,927 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/) 2021-09-08T17:22:40,928 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/) 2021-09-08T17:22:40,928 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/) 2021-09-08T17:22:40,929 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/) 2021-09-08T17:22:40,961 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates 2021-09-08T17:22:40,992 Collecting novartis-pisces==0.1.4.2 2021-09-08T17:22:40,996 Created temporary directory: /tmp/pip-unpack-fb6p6u1t 2021-09-08T17:22:41,779 Downloading novartis-pisces-0.1.4.2.tar.gz (18.4 MB) 2021-09-08T17:22:50,370 Added novartis-pisces==0.1.4.2 from https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 to build tracker '/tmp/pip-req-tracker-cy0tia2a' 2021-09-08T17:22:50,376 Running setup.py (path:/tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61/setup.py) egg_info for package novartis-pisces 2021-09-08T17:22:50,378 Created temporary directory: /tmp/pip-pip-egg-info-0as70noj 2021-09-08T17:22:50,379 Running command python setup.py egg_info 2021-09-08T17:22:55,233 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-09-08T17:22:58,318 running egg_info 2021-09-08T17:22:58,325 creating /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info 2021-09-08T17:22:58,327 writing dependency_links to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/dependency_links.txt 2021-09-08T17:22:58,330 writing requirements to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/requires.txt 2021-09-08T17:22:58,333 writing /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/PKG-INFO 2021-09-08T17:22:58,338 writing top-level names to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/top_level.txt 2021-09-08T17:22:58,340 writing entry points to /tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/entry_points.txt 2021-09-08T17:22:58,344 writing manifest file '/tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/SOURCES.txt' 2021-09-08T17:22:58,725 reading manifest file '/tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/SOURCES.txt' 2021-09-08T17:22:58,729 reading manifest template 'MANIFEST.in' 2021-09-08T17:22:58,756 writing manifest file '/tmp/pip-pip-egg-info-0as70noj/novartis_pisces.egg-info/SOURCES.txt' 2021-09-08T17:22:58,918 Source in /tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61 has version 0.1.4.2, which satisfies requirement novartis-pisces==0.1.4.2 from https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 2021-09-08T17:22:58,920 Removed novartis-pisces==0.1.4.2 from https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 from build tracker '/tmp/pip-req-tracker-cy0tia2a' 2021-09-08T17:22:58,928 Created temporary directory: /tmp/pip-unpack-c5xzxfs3 2021-09-08T17:22:58,929 Building wheels for collected packages: novartis-pisces 2021-09-08T17:22:58,938 Created temporary directory: /tmp/pip-wheel-120ez9gk 2021-09-08T17:22:58,939 Building wheel for novartis-pisces (setup.py): started 2021-09-08T17:22:58,940 Destination directory: /tmp/pip-wheel-120ez9gk 2021-09-08T17:22:58,940 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-eybj94sb/novartis-pisces_561a93beb09c450b8130b197e872bf61/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-120ez9gk 2021-09-08T17:23:01,646 running bdist_wheel 2021-09-08T17:23:01,653 running build 2021-09-08T17:23:01,654 running build_py 2021-09-08T17:23:01,976 creating build 2021-09-08T17:23:01,977 creating build/lib 2021-09-08T17:23:01,978 creating build/lib/pisces 2021-09-08T17:23:01,981 copying pisces/cli.py -> build/lib/pisces 2021-09-08T17:23:01,986 copying pisces/index.py -> build/lib/pisces 2021-09-08T17:23:01,992 copying pisces/fastq.py -> build/lib/pisces 2021-09-08T17:23:01,997 copying pisces/__init__.py -> build/lib/pisces 2021-09-08T17:23:02,002 copying pisces/run.py -> build/lib/pisces 2021-09-08T17:23:02,009 copying pisces/qc.py -> build/lib/pisces 2021-09-08T17:23:02,015 copying pisces/submit.py -> build/lib/pisces 2021-09-08T17:23:02,021 running egg_info 2021-09-08T17:23:02,033 writing novartis_pisces.egg-info/PKG-INFO 2021-09-08T17:23:02,038 writing dependency_links to novartis_pisces.egg-info/dependency_links.txt 2021-09-08T17:23:02,041 writing requirements to novartis_pisces.egg-info/requires.txt 2021-09-08T17:23:02,044 writing top-level names to novartis_pisces.egg-info/top_level.txt 2021-09-08T17:23:02,048 writing entry points to novartis_pisces.egg-info/entry_points.txt 2021-09-08T17:23:02,086 reading manifest file 'novartis_pisces.egg-info/SOURCES.txt' 2021-09-08T17:23:02,116 reading manifest template 'MANIFEST.in' 2021-09-08T17:23:02,144 writing manifest file 'novartis_pisces.egg-info/SOURCES.txt' 2021-09-08T17:23:02,154 copying pisces/config.json -> build/lib/pisces 2021-09-08T17:23:02,159 creating build/lib/pisces/R 2021-09-08T17:23:02,160 copying pisces/R/.Rprofile -> build/lib/pisces/R 2021-09-08T17:23:02,165 copying pisces/R/.gitignore -> build/lib/pisces/R 2021-09-08T17:23:02,169 copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R 2021-09-08T17:23:02,178 copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R 2021-09-08T17:23:02,184 creating build/lib/pisces/R/renv 2021-09-08T17:23:02,186 copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv 2021-09-08T17:23:02,194 creating build/lib/pisces/data 2021-09-08T17:23:02,196 copying pisces/data/fp_kmers.txt -> build/lib/pisces/data 2021-09-08T17:23:02,207 copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data 2021-09-08T17:23:02,216 creating build/lib/pisces/scripts 2021-09-08T17:23:02,218 copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts 2021-09-08T17:23:02,227 copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts 2021-09-08T17:23:02,235 creating build/lib/pisces/tests 2021-09-08T17:23:02,237 copying pisces/tests/test_cli.py -> build/lib/pisces/tests 2021-09-08T17:23:02,253 installing to build/bdist.linux-armv7l/wheel 2021-09-08T17:23:02,254 running install 2021-09-08T17:23:02,256 running install_lib 2021-09-08T17:23:02,263 creating build/bdist.linux-armv7l 2021-09-08T17:23:02,264 creating build/bdist.linux-armv7l/wheel 2021-09-08T17:23:02,268 creating build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,271 creating build/bdist.linux-armv7l/wheel/pisces/scripts 2021-09-08T17:23:02,273 copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts 2021-09-08T17:23:02,279 copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts 2021-09-08T17:23:02,285 copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,291 creating build/bdist.linux-armv7l/wheel/pisces/tests 2021-09-08T17:23:02,293 copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests 2021-09-08T17:23:02,299 copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,307 copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,312 copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,319 copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,326 copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,334 creating build/bdist.linux-armv7l/wheel/pisces/R 2021-09-08T17:23:02,338 creating build/bdist.linux-armv7l/wheel/pisces/R/renv 2021-09-08T17:23:02,340 copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv 2021-09-08T17:23:02,348 copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R 2021-09-08T17:23:02,353 copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R 2021-09-08T17:23:02,358 copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R 2021-09-08T17:23:02,367 copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R 2021-09-08T17:23:02,372 copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,378 copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces 2021-09-08T17:23:02,386 creating build/bdist.linux-armv7l/wheel/pisces/data 2021-09-08T17:23:02,389 copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data 2021-09-08T17:23:02,397 copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data 2021-09-08T17:23:02,406 running install_egg_info 2021-09-08T17:23:02,417 Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.2-py3.5.egg-info 2021-09-08T17:23:02,445 running install_scripts 2021-09-08T17:23:02,546 creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.2.dist-info/WHEEL 2021-09-08T17:23:02,876 Building wheel for novartis-pisces (setup.py): finished with status 'done' 2021-09-08T17:23:02,880 Created wheel for novartis-pisces: filename=novartis_pisces-0.1.4.2-py3-none-any.whl size=57397 sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1 2021-09-08T17:23:02,881 Stored in directory: /tmp/pip-ephem-wheel-cache-2sjg2p4o/wheels/5e/5b/55/6065c9b3ff764728321e10893babb069872ac81afd92b952b6 2021-09-08T17:23:02,899 Successfully built novartis-pisces 2021-09-08T17:23:02,914 Removed build tracker: '/tmp/pip-req-tracker-cy0tia2a'