2021-09-14T00:53:19,202 Created temporary directory: /tmp/pip-ephem-wheel-cache-jt54t9zz
2021-09-14T00:53:19,208 Created temporary directory: /tmp/pip-req-tracker-xxdlp01_
2021-09-14T00:53:19,209 Initialized build tracking at /tmp/pip-req-tracker-xxdlp01_
2021-09-14T00:53:19,210 Created build tracker: /tmp/pip-req-tracker-xxdlp01_
2021-09-14T00:53:19,210 Entered build tracker: /tmp/pip-req-tracker-xxdlp01_
2021-09-14T00:53:19,211 Created temporary directory: /tmp/pip-wheel-vz_fxj40
2021-09-14T00:53:19,281 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-14T00:53:19,285 2 location(s) to search for versions of novartis-pisces:
2021-09-14T00:53:19,285 * https://pypi.org/simple/novartis-pisces/
2021-09-14T00:53:19,285 * https://www.piwheels.org/simple/novartis-pisces/
2021-09-14T00:53:19,286 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2021-09-14T00:53:19,288 Getting page https://pypi.org/simple/novartis-pisces/
2021-09-14T00:53:19,292 Found index url https://pypi.org/simple
2021-09-14T00:53:19,619   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2021-09-14T00:53:19,620   Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2
2021-09-14T00:53:19,621   Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3
2021-09-14T00:53:19,622   Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1
2021-09-14T00:53:19,623   Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4
2021-09-14T00:53:19,624   Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2
2021-09-14T00:53:19,625   Found link https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.3
2021-09-14T00:53:19,626 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/
2021-09-14T00:53:19,626 Getting page https://www.piwheels.org/simple/novartis-pisces/
2021-09-14T00:53:19,629 Found index url https://www.piwheels.org/simple
2021-09-14T00:53:19,804   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-14T00:53:19,805   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-14T00:53:19,805   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-14T00:53:19,806   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-14T00:53:19,807   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-14T00:53:19,807   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.2-py3-none-any.whl#sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-09-14T00:53:19,840 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2021-09-14T00:53:19,872 Collecting novartis-pisces==0.1.4.3
2021-09-14T00:53:19,875   Created temporary directory: /tmp/pip-unpack-_3wyhnv3
2021-09-14T00:53:20,638   Downloading novartis-pisces-0.1.4.3.tar.gz (18.4 MB)
2021-09-14T00:53:29,286   Added novartis-pisces==0.1.4.3 from https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 to build tracker '/tmp/pip-req-tracker-xxdlp01_'
2021-09-14T00:53:29,290     Running setup.py (path:/tmp/pip-wheel-vz_fxj40/novartis-pisces_0b299a6abf7b4073aae667255ed3cf93/setup.py) egg_info for package novartis-pisces
2021-09-14T00:53:29,291     Created temporary directory: /tmp/pip-pip-egg-info-3j8s5rd5
2021-09-14T00:53:29,292     Running command python setup.py egg_info
2021-09-14T00:53:34,665     DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-09-14T00:53:37,734     running egg_info
2021-09-14T00:53:37,742     creating /tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info
2021-09-14T00:53:37,744     writing top-level names to /tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/top_level.txt
2021-09-14T00:53:37,748     writing entry points to /tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/entry_points.txt
2021-09-14T00:53:37,750     writing dependency_links to /tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/dependency_links.txt
2021-09-14T00:53:37,752     writing requirements to /tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/requires.txt
2021-09-14T00:53:37,754     writing /tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/PKG-INFO
2021-09-14T00:53:37,760     writing manifest file '/tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/SOURCES.txt'
2021-09-14T00:53:38,166     reading manifest file '/tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/SOURCES.txt'
2021-09-14T00:53:38,171     reading manifest template 'MANIFEST.in'
2021-09-14T00:53:38,191     writing manifest file '/tmp/pip-pip-egg-info-3j8s5rd5/novartis_pisces.egg-info/SOURCES.txt'
2021-09-14T00:53:38,354   Source in /tmp/pip-wheel-vz_fxj40/novartis-pisces_0b299a6abf7b4073aae667255ed3cf93 has version 0.1.4.3, which satisfies requirement novartis-pisces==0.1.4.3 from https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618
2021-09-14T00:53:38,356   Removed novartis-pisces==0.1.4.3 from https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 from build tracker '/tmp/pip-req-tracker-xxdlp01_'
2021-09-14T00:53:38,364 Created temporary directory: /tmp/pip-unpack-b6wo0qrd
2021-09-14T00:53:38,365 Building wheels for collected packages: novartis-pisces
2021-09-14T00:53:38,374   Created temporary directory: /tmp/pip-wheel-rdt6cb26
2021-09-14T00:53:38,375   Building wheel for novartis-pisces (setup.py): started
2021-09-14T00:53:38,375   Destination directory: /tmp/pip-wheel-rdt6cb26
2021-09-14T00:53:38,376   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vz_fxj40/novartis-pisces_0b299a6abf7b4073aae667255ed3cf93/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vz_fxj40/novartis-pisces_0b299a6abf7b4073aae667255ed3cf93/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rdt6cb26
2021-09-14T00:53:41,333   running bdist_wheel
2021-09-14T00:53:41,340   running build
2021-09-14T00:53:41,341   running build_py
2021-09-14T00:53:41,657   creating build
2021-09-14T00:53:41,657   creating build/lib
2021-09-14T00:53:41,659   creating build/lib/pisces
2021-09-14T00:53:41,662   copying pisces/cli.py -> build/lib/pisces
2021-09-14T00:53:41,667   copying pisces/__init__.py -> build/lib/pisces
2021-09-14T00:53:41,672   copying pisces/index.py -> build/lib/pisces
2021-09-14T00:53:41,679   copying pisces/run.py -> build/lib/pisces
2021-09-14T00:53:41,685   copying pisces/qc.py -> build/lib/pisces
2021-09-14T00:53:41,691   copying pisces/submit.py -> build/lib/pisces
2021-09-14T00:53:41,698   copying pisces/fastq.py -> build/lib/pisces
2021-09-14T00:53:41,704   running egg_info
2021-09-14T00:53:41,718   writing requirements to novartis_pisces.egg-info/requires.txt
2021-09-14T00:53:41,721   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2021-09-14T00:53:41,724   writing top-level names to novartis_pisces.egg-info/top_level.txt
2021-09-14T00:53:41,726   writing novartis_pisces.egg-info/PKG-INFO
2021-09-14T00:53:41,731   writing entry points to novartis_pisces.egg-info/entry_points.txt
2021-09-14T00:53:41,769   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-09-14T00:53:41,802   reading manifest template 'MANIFEST.in'
2021-09-14T00:53:41,830   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-09-14T00:53:41,840   copying pisces/config.json -> build/lib/pisces
2021-09-14T00:53:41,845   creating build/lib/pisces/R
2021-09-14T00:53:41,846   copying pisces/R/.Rprofile -> build/lib/pisces/R
2021-09-14T00:53:41,851   copying pisces/R/.gitignore -> build/lib/pisces/R
2021-09-14T00:53:41,855   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2021-09-14T00:53:41,863   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2021-09-14T00:53:41,867   creating build/lib/pisces/R/renv
2021-09-14T00:53:41,869   copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv
2021-09-14T00:53:41,877   creating build/lib/pisces/data
2021-09-14T00:53:41,879   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2021-09-14T00:53:41,890   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2021-09-14T00:53:41,899   creating build/lib/pisces/scripts
2021-09-14T00:53:41,901   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2021-09-14T00:53:41,910   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2021-09-14T00:53:41,918   creating build/lib/pisces/tests
2021-09-14T00:53:41,921   copying pisces/tests/test_cli.py -> build/lib/pisces/tests
2021-09-14T00:53:41,935   installing to build/bdist.linux-armv7l/wheel
2021-09-14T00:53:41,936   running install
2021-09-14T00:53:41,938   running install_lib
2021-09-14T00:53:41,946   creating build/bdist.linux-armv7l
2021-09-14T00:53:41,947   creating build/bdist.linux-armv7l/wheel
2021-09-14T00:53:41,951   creating build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:41,954   creating build/bdist.linux-armv7l/wheel/pisces/R
2021-09-14T00:53:41,957   creating build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-09-14T00:53:41,959   copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-09-14T00:53:41,965   copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-14T00:53:41,969   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-14T00:53:41,973   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-14T00:53:41,982   copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R
2021-09-14T00:53:41,988   creating build/bdist.linux-armv7l/wheel/pisces/tests
2021-09-14T00:53:41,991   copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests
2021-09-14T00:53:41,996   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,003   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,008   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,017   creating build/bdist.linux-armv7l/wheel/pisces/data
2021-09-14T00:53:42,019   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-09-14T00:53:42,029   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-09-14T00:53:42,037   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,045   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,051   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,059   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-14T00:53:42,061   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-14T00:53:42,070   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-09-14T00:53:42,077   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,083   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2021-09-14T00:53:42,087   running install_egg_info
2021-09-14T00:53:42,095   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.3-py3.5.egg-info
2021-09-14T00:53:42,124   running install_scripts
2021-09-14T00:53:42,211   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.3.dist-info/WHEEL
2021-09-14T00:53:42,532   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2021-09-14T00:53:42,537   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.4.3-py3-none-any.whl size=57401 sha256=0df67ceec82649982fda766535f4204513e9793b6cbf2249d232a8b3356a6612
2021-09-14T00:53:42,537   Stored in directory: /tmp/pip-ephem-wheel-cache-jt54t9zz/wheels/92/6f/63/cafc17af13a1818cc8c5b1a09cfcbf1951c9023cf12366414c
2021-09-14T00:53:42,556 Successfully built novartis-pisces
2021-09-14T00:53:42,571 Removed build tracker: '/tmp/pip-req-tracker-xxdlp01_'