2021-09-16T06:48:04,524 Created temporary directory: /tmp/pip-ephem-wheel-cache-wcqo3v7q
2021-09-16T06:48:04,528 Created temporary directory: /tmp/pip-req-tracker-7slp05e6
2021-09-16T06:48:04,529 Initialized build tracking at /tmp/pip-req-tracker-7slp05e6
2021-09-16T06:48:04,529 Created build tracker: /tmp/pip-req-tracker-7slp05e6
2021-09-16T06:48:04,529 Entered build tracker: /tmp/pip-req-tracker-7slp05e6
2021-09-16T06:48:04,530 Created temporary directory: /tmp/pip-wheel-wzy9gt2u
2021-09-16T06:48:04,562 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-16T06:48:04,565 2 location(s) to search for versions of stereopy:
2021-09-16T06:48:04,565 * https://pypi.org/simple/stereopy/
2021-09-16T06:48:04,565 * https://www.piwheels.org/simple/stereopy/
2021-09-16T06:48:04,565 Fetching project page and analyzing links: https://pypi.org/simple/stereopy/
2021-09-16T06:48:04,566 Getting page https://pypi.org/simple/stereopy/
2021-09-16T06:48:04,567 Found index url https://pypi.org/simple
2021-09-16T06:48:04,653   Found link https://files.pythonhosted.org/packages/ba/e8/211af80a80404175bc1fd16031e19187a8f9f30bbbf83ef798b805bcbfa8/stereopy-0.1.tar.gz#sha256=618b0c895b568f307841c4b6e95448eb73cc56ad5df3b5aff48261dc8a4eb24b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1
2021-09-16T06:48:04,654   Found link https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1.9
2021-09-16T06:48:04,654 Fetching project page and analyzing links: https://www.piwheels.org/simple/stereopy/
2021-09-16T06:48:04,655 Getting page https://www.piwheels.org/simple/stereopy/
2021-09-16T06:48:04,656 Found index url https://www.piwheels.org/simple
2021-09-16T06:48:05,100   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1-py3-none-any.whl#sha256=1436faf8dcf176e53adce94e2bc87792de7d4cdaaed317c408128bc9daa5e231 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2021-09-16T06:48:05,101 Skipping link: not a file: https://www.piwheels.org/simple/stereopy/
2021-09-16T06:48:05,102 Skipping link: not a file: https://pypi.org/simple/stereopy/
2021-09-16T06:48:05,125 Given no hashes to check 1 links for project 'stereopy': discarding no candidates
2021-09-16T06:48:05,140 Collecting stereopy==0.1.9
2021-09-16T06:48:05,141   Created temporary directory: /tmp/pip-unpack-a9foljm0
2021-09-16T06:48:05,180   Downloading stereopy-0.1.9.tar.gz (14.9 MB)
2021-09-16T06:48:08,227   Added stereopy==0.1.9 from https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154 to build tracker '/tmp/pip-req-tracker-7slp05e6'
2021-09-16T06:48:08,228     Running setup.py (path:/tmp/pip-wheel-wzy9gt2u/stereopy_ddcaa9a35ee2483a97575d985f56a525/setup.py) egg_info for package stereopy
2021-09-16T06:48:08,228     Created temporary directory: /tmp/pip-pip-egg-info-9zw0k2i_
2021-09-16T06:48:08,229     Running command python setup.py egg_info
2021-09-16T07:09:04,837     running egg_info
2021-09-16T07:09:04,840     creating /tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info
2021-09-16T07:09:04,841     writing /tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info/PKG-INFO
2021-09-16T07:09:04,843     writing dependency_links to /tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info/dependency_links.txt
2021-09-16T07:09:04,845     writing requirements to /tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info/requires.txt
2021-09-16T07:09:04,847     writing top-level names to /tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info/top_level.txt
2021-09-16T07:09:04,848     writing manifest file '/tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info/SOURCES.txt'
2021-09-16T07:09:05,069     listing git files failed - pretending there aren't any
2021-09-16T07:09:05,085     reading manifest file '/tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info/SOURCES.txt'
2021-09-16T07:09:05,087     adding license file 'LICENSE'
2021-09-16T07:09:05,093     writing manifest file '/tmp/pip-pip-egg-info-9zw0k2i_/stereopy.egg-info/SOURCES.txt'
2021-09-16T07:09:05,177   Source in /tmp/pip-wheel-wzy9gt2u/stereopy_ddcaa9a35ee2483a97575d985f56a525 has version 0.1.9, which satisfies requirement stereopy==0.1.9 from https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154
2021-09-16T07:09:05,178   Removed stereopy==0.1.9 from https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154 from build tracker '/tmp/pip-req-tracker-7slp05e6'
2021-09-16T07:09:05,183 Created temporary directory: /tmp/pip-unpack-ok51zb_1
2021-09-16T07:09:05,184 Building wheels for collected packages: stereopy
2021-09-16T07:09:05,190   Created temporary directory: /tmp/pip-wheel-kfr7r96a
2021-09-16T07:09:05,190   Building wheel for stereopy (setup.py): started
2021-09-16T07:09:05,191   Destination directory: /tmp/pip-wheel-kfr7r96a
2021-09-16T07:09:05,191   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wzy9gt2u/stereopy_ddcaa9a35ee2483a97575d985f56a525/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wzy9gt2u/stereopy_ddcaa9a35ee2483a97575d985f56a525/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-kfr7r96a
2021-09-16T07:09:12,398   running bdist_wheel
2021-09-16T07:09:12,403   running build
2021-09-16T07:09:12,403   running build_py
2021-09-16T07:09:12,539   creating build
2021-09-16T07:09:12,539   creating build/lib
2021-09-16T07:09:12,540   creating build/lib/stereo
2021-09-16T07:09:12,541   copying stereo/__init__.py -> build/lib/stereo
2021-09-16T07:09:12,543   copying stereo/log_manager.py -> build/lib/stereo
2021-09-16T07:09:12,545   copying stereo/config.py -> build/lib/stereo
2021-09-16T07:09:12,549   creating build/lib/stereo/preprocess
2021-09-16T07:09:12,550   copying stereo/preprocess/normalize.py -> build/lib/stereo/preprocess
2021-09-16T07:09:12,552   copying stereo/preprocess/filter.py -> build/lib/stereo/preprocess
2021-09-16T07:09:12,555   copying stereo/preprocess/__init__.py -> build/lib/stereo/preprocess
2021-09-16T07:09:12,557   copying stereo/preprocess/sc_transform.py -> build/lib/stereo/preprocess
2021-09-16T07:09:12,560   copying stereo/preprocess/qc.py -> build/lib/stereo/preprocess
2021-09-16T07:09:12,563   creating build/lib/stereo/image
2021-09-16T07:09:12,564   copying stereo/image/__init__.py -> build/lib/stereo/image
2021-09-16T07:09:12,566   copying stereo/image/pyramid.py -> build/lib/stereo/image
2021-09-16T07:09:12,570   creating build/lib/stereo/algorithm
2021-09-16T07:09:12,572   copying stereo/algorithm/neighbors.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,575   copying stereo/algorithm/__init__.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,577   copying stereo/algorithm/_louvain.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,580   copying stereo/algorithm/leiden.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,583   copying stereo/algorithm/normalization.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,585   copying stereo/algorithm/highly_variable_genes.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,588   copying stereo/algorithm/statistics.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,591   copying stereo/algorithm/phenograph.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,593   copying stereo/algorithm/dim_reduce.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,596   copying stereo/algorithm/spatial_pattern_score.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,598   copying stereo/algorithm/umap.py -> build/lib/stereo/algorithm
2021-09-16T07:09:12,602   creating build/lib/stereo/utils
2021-09-16T07:09:12,603   copying stereo/utils/__init__.py -> build/lib/stereo/utils
2021-09-16T07:09:12,606   copying stereo/utils/data_helper.py -> build/lib/stereo/utils
2021-09-16T07:09:12,608   copying stereo/utils/hvg_utils.py -> build/lib/stereo/utils
2021-09-16T07:09:12,611   copying stereo/utils/correlation.py -> build/lib/stereo/utils
2021-09-16T07:09:12,613   copying stereo/utils/spmatrix_helper.py -> build/lib/stereo/utils
2021-09-16T07:09:12,616   creating build/lib/stereo/core
2021-09-16T07:09:12,617   copying stereo/core/__init__.py -> build/lib/stereo/core
2021-09-16T07:09:12,620   copying stereo/core/cell.py -> build/lib/stereo/core
2021-09-16T07:09:12,622   copying stereo/core/data.py -> build/lib/stereo/core
2021-09-16T07:09:12,624   copying stereo/core/stereo_exp_data.py -> build/lib/stereo/core
2021-09-16T07:09:12,627   copying stereo/core/st_pipeline.py -> build/lib/stereo/core
2021-09-16T07:09:12,630   copying stereo/core/gene.py -> build/lib/stereo/core
2021-09-16T07:09:12,633   copying stereo/core/tool_base.py -> build/lib/stereo/core
2021-09-16T07:09:12,636   copying stereo/core/stereo_result.py -> build/lib/stereo/core
2021-09-16T07:09:12,639   creating build/lib/stereo/io
2021-09-16T07:09:12,640   copying stereo/io/reader.py -> build/lib/stereo/io
2021-09-16T07:09:12,643   copying stereo/io/__init__.py -> build/lib/stereo/io
2021-09-16T07:09:12,645   copying stereo/io/gef.py -> build/lib/stereo/io
2021-09-16T07:09:12,648   copying stereo/io/writer.py -> build/lib/stereo/io
2021-09-16T07:09:12,651   copying stereo/io/h5ad.py -> build/lib/stereo/io
2021-09-16T07:09:12,655   creating build/lib/stereo/tools
2021-09-16T07:09:12,657   copying stereo/tools/cluster_new.py -> build/lib/stereo/tools
2021-09-16T07:09:12,660   copying stereo/tools/find_markers.py -> build/lib/stereo/tools
2021-09-16T07:09:12,663   copying stereo/tools/clustering.py -> build/lib/stereo/tools
2021-09-16T07:09:12,665   copying stereo/tools/__init__.py -> build/lib/stereo/tools
2021-09-16T07:09:12,668   copying stereo/tools/spatial_lag.py -> build/lib/stereo/tools
2021-09-16T07:09:12,671   copying stereo/tools/cluster.py -> build/lib/stereo/tools
2021-09-16T07:09:12,673   copying stereo/tools/highly_variable_genes.py -> build/lib/stereo/tools
2021-09-16T07:09:12,676   copying stereo/tools/cell_type_anno.py -> build/lib/stereo/tools
2021-09-16T07:09:12,680   copying stereo/tools/dim_reduce.py -> build/lib/stereo/tools
2021-09-16T07:09:12,682   copying stereo/tools/spatial_pattern_score.py -> build/lib/stereo/tools
2021-09-16T07:09:12,686   creating build/lib/stereo/plots
2021-09-16T07:09:12,687   copying stereo/plots/__init__.py -> build/lib/stereo/plots
2021-09-16T07:09:12,690   copying stereo/plots/marker_genes.py -> build/lib/stereo/plots
2021-09-16T07:09:12,693   copying stereo/plots/plot_collection.py -> build/lib/stereo/plots
2021-09-16T07:09:12,696   copying stereo/plots/qc.py -> build/lib/stereo/plots
2021-09-16T07:09:12,699   copying stereo/plots/scatter.py -> build/lib/stereo/plots
2021-09-16T07:09:12,702   creating build/lib/stereo/image/segmentation
2021-09-16T07:09:12,703   copying stereo/image/segmentation/__init__.py -> build/lib/stereo/image/segmentation
2021-09-16T07:09:12,706   copying stereo/image/segmentation/segment.py -> build/lib/stereo/image/segmentation
2021-09-16T07:09:12,709   creating build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,710   copying stereo/image/segmentation/seg_utils/image.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,713   copying stereo/image/segmentation/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,715   copying stereo/image/segmentation/seg_utils/__init__.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,717   copying stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,720   copying stereo/image/segmentation/seg_utils/grade.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,723   copying stereo/image/segmentation/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,726   copying stereo/image/segmentation/seg_utils/tissue_seg.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,728   copying stereo/image/segmentation/seg_utils/utils.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,731   copying stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,735   creating build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,736   copying stereo/algorithm/pysctransform/fit_glmgp.py -> build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,739   copying stereo/algorithm/pysctransform/plotting.py -> build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,742   copying stereo/algorithm/pysctransform/__init__.py -> build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,744   copying stereo/algorithm/pysctransform/jax_bfgs.py -> build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,746   copying stereo/algorithm/pysctransform/r_bw.py -> build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,748   copying stereo/algorithm/pysctransform/fit.py -> build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,751   copying stereo/algorithm/pysctransform/pysctransform.py -> build/lib/stereo/algorithm/pysctransform
2021-09-16T07:09:12,755   creating build/lib/stereo/plots/interact_plot
2021-09-16T07:09:12,756   copying stereo/plots/interact_plot/__init__.py -> build/lib/stereo/plots/interact_plot
2021-09-16T07:09:12,759   copying stereo/plots/interact_plot/spatial_cluster.py -> build/lib/stereo/plots/interact_plot
2021-09-16T07:09:12,761   copying stereo/plots/interact_plot/interactive_scatter.py -> build/lib/stereo/plots/interact_plot
2021-09-16T07:09:12,765   creating build/lib/stereo/plots/_plot_basic
2021-09-16T07:09:12,766   copying stereo/plots/_plot_basic/__init__.py -> build/lib/stereo/plots/_plot_basic
2021-09-16T07:09:12,768   copying stereo/plots/_plot_basic/scatter_plt.py -> build/lib/stereo/plots/_plot_basic
2021-09-16T07:09:12,770   copying stereo/plots/_plot_basic/heatmap_plt.py -> build/lib/stereo/plots/_plot_basic
2021-09-16T07:09:12,773   copying stereo/plots/_plot_basic/get_stereo_data.py -> build/lib/stereo/plots/_plot_basic
2021-09-16T07:09:12,775   running egg_info
2021-09-16T07:09:12,779   writing stereopy.egg-info/PKG-INFO
2021-09-16T07:09:12,781   writing dependency_links to stereopy.egg-info/dependency_links.txt
2021-09-16T07:09:12,783   writing requirements to stereopy.egg-info/requires.txt
2021-09-16T07:09:12,784   writing top-level names to stereopy.egg-info/top_level.txt
2021-09-16T07:09:12,823   listing git files failed - pretending there aren't any
2021-09-16T07:09:12,836   reading manifest file 'stereopy.egg-info/SOURCES.txt'
2021-09-16T07:09:12,851   adding license file 'LICENSE'
2021-09-16T07:09:12,861   writing manifest file 'stereopy.egg-info/SOURCES.txt'
2021-09-16T07:09:12,882   installing to build/bdist.linux-armv7l/wheel
2021-09-16T07:09:12,883   running install
2021-09-16T07:09:12,884   running install_lib
2021-09-16T07:09:12,888   creating build/bdist.linux-armv7l
2021-09-16T07:09:12,888   creating build/bdist.linux-armv7l/wheel
2021-09-16T07:09:12,890   creating build/bdist.linux-armv7l/wheel/stereo
2021-09-16T07:09:12,891   creating build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-09-16T07:09:12,892   copying build/lib/stereo/preprocess/normalize.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-09-16T07:09:12,895   copying build/lib/stereo/preprocess/filter.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-09-16T07:09:12,897   copying build/lib/stereo/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-09-16T07:09:12,899   copying build/lib/stereo/preprocess/sc_transform.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-09-16T07:09:12,901   copying build/lib/stereo/preprocess/qc.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-09-16T07:09:12,903   copying build/lib/stereo/__init__.py -> build/bdist.linux-armv7l/wheel/stereo
2021-09-16T07:09:12,905   creating build/bdist.linux-armv7l/wheel/stereo/image
2021-09-16T07:09:12,906   copying build/lib/stereo/image/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image
2021-09-16T07:09:12,908   copying build/lib/stereo/image/pyramid.py -> build/bdist.linux-armv7l/wheel/stereo/image
2021-09-16T07:09:12,911   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2021-09-16T07:09:12,912   copying build/lib/stereo/image/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2021-09-16T07:09:12,915   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,916   copying build/lib/stereo/image/segmentation/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,919   copying build/lib/stereo/image/segmentation/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,922   copying build/lib/stereo/image/segmentation/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,923   copying build/lib/stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,926   copying build/lib/stereo/image/segmentation/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,929   copying build/lib/stereo/image/segmentation/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,932   copying build/lib/stereo/image/segmentation/seg_utils/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,934   copying build/lib/stereo/image/segmentation/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,937   copying build/lib/stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-09-16T07:09:12,939   copying build/lib/stereo/image/segmentation/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2021-09-16T07:09:12,942   creating build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,943   copying build/lib/stereo/algorithm/neighbors.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,946   copying build/lib/stereo/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,948   copying build/lib/stereo/algorithm/_louvain.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,951   copying build/lib/stereo/algorithm/leiden.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,953   copying build/lib/stereo/algorithm/normalization.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,955   copying build/lib/stereo/algorithm/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,958   copying build/lib/stereo/algorithm/statistics.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,960   copying build/lib/stereo/algorithm/phenograph.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,963   creating build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,964   copying build/lib/stereo/algorithm/pysctransform/fit_glmgp.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,966   copying build/lib/stereo/algorithm/pysctransform/plotting.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,969   copying build/lib/stereo/algorithm/pysctransform/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,971   copying build/lib/stereo/algorithm/pysctransform/jax_bfgs.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,973   copying build/lib/stereo/algorithm/pysctransform/r_bw.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,975   copying build/lib/stereo/algorithm/pysctransform/fit.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,978   copying build/lib/stereo/algorithm/pysctransform/pysctransform.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-09-16T07:09:12,981   copying build/lib/stereo/algorithm/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,983   copying build/lib/stereo/algorithm/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,986   copying build/lib/stereo/algorithm/umap.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-09-16T07:09:12,989   creating build/bdist.linux-armv7l/wheel/stereo/utils
2021-09-16T07:09:12,990   copying build/lib/stereo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-09-16T07:09:12,992   copying build/lib/stereo/utils/data_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-09-16T07:09:12,994   copying build/lib/stereo/utils/hvg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-09-16T07:09:12,997   copying build/lib/stereo/utils/correlation.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-09-16T07:09:12,999   copying build/lib/stereo/utils/spmatrix_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-09-16T07:09:13,002   creating build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,003   copying build/lib/stereo/core/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,006   copying build/lib/stereo/core/cell.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,008   copying build/lib/stereo/core/data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,010   copying build/lib/stereo/core/stereo_exp_data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,013   copying build/lib/stereo/core/st_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,017   copying build/lib/stereo/core/gene.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,019   copying build/lib/stereo/core/tool_base.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,022   copying build/lib/stereo/core/stereo_result.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-09-16T07:09:13,025   creating build/bdist.linux-armv7l/wheel/stereo/io
2021-09-16T07:09:13,026   copying build/lib/stereo/io/reader.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-09-16T07:09:13,029   copying build/lib/stereo/io/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-09-16T07:09:13,031   copying build/lib/stereo/io/gef.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-09-16T07:09:13,034   copying build/lib/stereo/io/writer.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-09-16T07:09:13,037   copying build/lib/stereo/io/h5ad.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-09-16T07:09:13,041   creating build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,042   copying build/lib/stereo/tools/cluster_new.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,045   copying build/lib/stereo/tools/find_markers.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,048   copying build/lib/stereo/tools/clustering.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,051   copying build/lib/stereo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,054   copying build/lib/stereo/tools/spatial_lag.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,057   copying build/lib/stereo/tools/cluster.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,059   copying build/lib/stereo/tools/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,062   copying build/lib/stereo/tools/cell_type_anno.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,065   copying build/lib/stereo/tools/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,068   copying build/lib/stereo/tools/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-09-16T07:09:13,070   copying build/lib/stereo/log_manager.py -> build/bdist.linux-armv7l/wheel/stereo
2021-09-16T07:09:13,073   creating build/bdist.linux-armv7l/wheel/stereo/plots
2021-09-16T07:09:13,074   copying build/lib/stereo/plots/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-09-16T07:09:13,076   copying build/lib/stereo/plots/marker_genes.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-09-16T07:09:13,079   copying build/lib/stereo/plots/plot_collection.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-09-16T07:09:13,082   creating build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-09-16T07:09:13,083   copying build/lib/stereo/plots/interact_plot/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-09-16T07:09:13,086   copying build/lib/stereo/plots/interact_plot/spatial_cluster.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-09-16T07:09:13,088   copying build/lib/stereo/plots/interact_plot/interactive_scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-09-16T07:09:13,091   creating build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-09-16T07:09:13,092   copying build/lib/stereo/plots/_plot_basic/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-09-16T07:09:13,094   copying build/lib/stereo/plots/_plot_basic/scatter_plt.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-09-16T07:09:13,096   copying build/lib/stereo/plots/_plot_basic/heatmap_plt.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-09-16T07:09:13,099   copying build/lib/stereo/plots/_plot_basic/get_stereo_data.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-09-16T07:09:13,101   copying build/lib/stereo/plots/qc.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-09-16T07:09:13,104   copying build/lib/stereo/plots/scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-09-16T07:09:13,107   copying build/lib/stereo/config.py -> build/bdist.linux-armv7l/wheel/stereo
2021-09-16T07:09:13,109   running install_egg_info
2021-09-16T07:09:13,114   Copying stereopy.egg-info to build/bdist.linux-armv7l/wheel/stereopy-0.1.9-py3.7.egg-info
2021-09-16T07:09:13,126   running install_scripts
2021-09-16T07:09:13,258   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-09-16T07:09:13,263   creating build/bdist.linux-armv7l/wheel/stereopy-0.1.9.dist-info/WHEEL
2021-09-16T07:09:13,265   creating '/tmp/pip-wheel-kfr7r96a/stereopy-0.1.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-09-16T07:09:13,268   adding 'stereo/__init__.py'
2021-09-16T07:09:13,269   adding 'stereo/config.py'
2021-09-16T07:09:13,271   adding 'stereo/log_manager.py'
2021-09-16T07:09:13,273   adding 'stereo/algorithm/__init__.py'
2021-09-16T07:09:13,275   adding 'stereo/algorithm/_louvain.py'
2021-09-16T07:09:13,276   adding 'stereo/algorithm/dim_reduce.py'
2021-09-16T07:09:13,278   adding 'stereo/algorithm/highly_variable_genes.py'
2021-09-16T07:09:13,280   adding 'stereo/algorithm/leiden.py'
2021-09-16T07:09:13,283   adding 'stereo/algorithm/neighbors.py'
2021-09-16T07:09:13,285   adding 'stereo/algorithm/normalization.py'
2021-09-16T07:09:13,286   adding 'stereo/algorithm/phenograph.py'
2021-09-16T07:09:13,289   adding 'stereo/algorithm/spatial_pattern_score.py'
2021-09-16T07:09:13,290   adding 'stereo/algorithm/statistics.py'
2021-09-16T07:09:13,292   adding 'stereo/algorithm/umap.py'
2021-09-16T07:09:13,294   adding 'stereo/algorithm/pysctransform/__init__.py'
2021-09-16T07:09:13,296   adding 'stereo/algorithm/pysctransform/fit.py'
2021-09-16T07:09:13,297   adding 'stereo/algorithm/pysctransform/fit_glmgp.py'
2021-09-16T07:09:13,299   adding 'stereo/algorithm/pysctransform/jax_bfgs.py'
2021-09-16T07:09:13,300   adding 'stereo/algorithm/pysctransform/plotting.py'
2021-09-16T07:09:13,305   adding 'stereo/algorithm/pysctransform/pysctransform.py'
2021-09-16T07:09:13,307   adding 'stereo/algorithm/pysctransform/r_bw.py'
2021-09-16T07:09:13,309   adding 'stereo/core/__init__.py'
2021-09-16T07:09:13,310   adding 'stereo/core/cell.py'
2021-09-16T07:09:13,311   adding 'stereo/core/data.py'
2021-09-16T07:09:13,313   adding 'stereo/core/gene.py'
2021-09-16T07:09:13,317   adding 'stereo/core/st_pipeline.py'
2021-09-16T07:09:13,319   adding 'stereo/core/stereo_exp_data.py'
2021-09-16T07:09:13,321   adding 'stereo/core/stereo_result.py'
2021-09-16T07:09:13,322   adding 'stereo/core/tool_base.py'
2021-09-16T07:09:13,324   adding 'stereo/image/__init__.py'
2021-09-16T07:09:13,325   adding 'stereo/image/pyramid.py'
2021-09-16T07:09:13,327   adding 'stereo/image/segmentation/__init__.py'
2021-09-16T07:09:13,328   adding 'stereo/image/segmentation/segment.py'
2021-09-16T07:09:13,330   adding 'stereo/image/segmentation/seg_utils/__init__.py'
2021-09-16T07:09:13,332   adding 'stereo/image/segmentation/seg_utils/cell_infer.py'
2021-09-16T07:09:13,334   adding 'stereo/image/segmentation/seg_utils/cell_seg_pipeline.py'
2021-09-16T07:09:13,336   adding 'stereo/image/segmentation/seg_utils/find_maxima.py'
2021-09-16T07:09:13,338   adding 'stereo/image/segmentation/seg_utils/grade.py'
2021-09-16T07:09:13,339   adding 'stereo/image/segmentation/seg_utils/image.py'
2021-09-16T07:09:13,340   adding 'stereo/image/segmentation/seg_utils/tissue_seg.py'
2021-09-16T07:09:13,342   adding 'stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py'
2021-09-16T07:09:13,345   adding 'stereo/image/segmentation/seg_utils/utils.py'
2021-09-16T07:09:13,347   adding 'stereo/io/__init__.py'
2021-09-16T07:09:13,348   adding 'stereo/io/gef.py'
2021-09-16T07:09:13,350   adding 'stereo/io/h5ad.py'
2021-09-16T07:09:13,352   adding 'stereo/io/reader.py'
2021-09-16T07:09:13,354   adding 'stereo/io/writer.py'
2021-09-16T07:09:13,355   adding 'stereo/plots/__init__.py'
2021-09-16T07:09:13,357   adding 'stereo/plots/marker_genes.py'
2021-09-16T07:09:13,359   adding 'stereo/plots/plot_collection.py'
2021-09-16T07:09:13,361   adding 'stereo/plots/qc.py'
2021-09-16T07:09:13,363   adding 'stereo/plots/scatter.py'
2021-09-16T07:09:13,365   adding 'stereo/plots/_plot_basic/__init__.py'
2021-09-16T07:09:13,366   adding 'stereo/plots/_plot_basic/get_stereo_data.py'
2021-09-16T07:09:13,368   adding 'stereo/plots/_plot_basic/heatmap_plt.py'
2021-09-16T07:09:13,369   adding 'stereo/plots/_plot_basic/scatter_plt.py'
2021-09-16T07:09:13,371   adding 'stereo/plots/interact_plot/__init__.py'
2021-09-16T07:09:13,373   adding 'stereo/plots/interact_plot/interactive_scatter.py'
2021-09-16T07:09:13,374   adding 'stereo/plots/interact_plot/spatial_cluster.py'
2021-09-16T07:09:13,376   adding 'stereo/preprocess/__init__.py'
2021-09-16T07:09:13,377   adding 'stereo/preprocess/filter.py'
2021-09-16T07:09:13,379   adding 'stereo/preprocess/normalize.py'
2021-09-16T07:09:13,380   adding 'stereo/preprocess/qc.py'
2021-09-16T07:09:13,381   adding 'stereo/preprocess/sc_transform.py'
2021-09-16T07:09:13,383   adding 'stereo/tools/__init__.py'
2021-09-16T07:09:13,386   adding 'stereo/tools/cell_type_anno.py'
2021-09-16T07:09:13,387   adding 'stereo/tools/cluster.py'
2021-09-16T07:09:13,389   adding 'stereo/tools/cluster_new.py'
2021-09-16T07:09:13,391   adding 'stereo/tools/clustering.py'
2021-09-16T07:09:13,393   adding 'stereo/tools/dim_reduce.py'
2021-09-16T07:09:13,395   adding 'stereo/tools/find_markers.py'
2021-09-16T07:09:13,396   adding 'stereo/tools/highly_variable_genes.py'
2021-09-16T07:09:13,398   adding 'stereo/tools/spatial_lag.py'
2021-09-16T07:09:13,399   adding 'stereo/tools/spatial_pattern_score.py'
2021-09-16T07:09:13,401   adding 'stereo/utils/__init__.py'
2021-09-16T07:09:13,402   adding 'stereo/utils/correlation.py'
2021-09-16T07:09:13,404   adding 'stereo/utils/data_helper.py'
2021-09-16T07:09:13,406   adding 'stereo/utils/hvg_utils.py'
2021-09-16T07:09:13,407   adding 'stereo/utils/spmatrix_helper.py'
2021-09-16T07:09:13,409   adding 'stereopy-0.1.9.dist-info/LICENSE'
2021-09-16T07:09:13,410   adding 'stereopy-0.1.9.dist-info/METADATA'
2021-09-16T07:09:13,411   adding 'stereopy-0.1.9.dist-info/WHEEL'
2021-09-16T07:09:13,412   adding 'stereopy-0.1.9.dist-info/top_level.txt'
2021-09-16T07:09:13,413   adding 'stereopy-0.1.9.dist-info/RECORD'
2021-09-16T07:09:13,417   removing build/bdist.linux-armv7l/wheel
2021-09-16T07:09:13,534   Building wheel for stereopy (setup.py): finished with status 'done'
2021-09-16T07:09:13,537   Created wheel for stereopy: filename=stereopy-0.1.9-py3-none-any.whl size=141462 sha256=9786a21d45274a8ed729134a2a5fa7379701020aa314d693fc95f4cca2a91e75
2021-09-16T07:09:13,538   Stored in directory: /tmp/pip-ephem-wheel-cache-wcqo3v7q/wheels/c6/d5/b8/059285a7c3b2d9a69f1aa72b068bcab6ac08db3a88fabd82d9
2021-09-16T07:09:13,549 Successfully built stereopy
2021-09-16T07:09:13,559 Removed build tracker: '/tmp/pip-req-tracker-7slp05e6'