2021-09-16T14:48:57,401 Created temporary directory: /tmp/pip-ephem-wheel-cache-dvyb842n
2021-09-16T14:48:57,404 Created temporary directory: /tmp/pip-req-tracker-wpdrvn3h
2021-09-16T14:48:57,405 Initialized build tracking at /tmp/pip-req-tracker-wpdrvn3h
2021-09-16T14:48:57,405 Created build tracker: /tmp/pip-req-tracker-wpdrvn3h
2021-09-16T14:48:57,405 Entered build tracker: /tmp/pip-req-tracker-wpdrvn3h
2021-09-16T14:48:57,406 Created temporary directory: /tmp/pip-wheel-15zaji3_
2021-09-16T14:48:57,440 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-16T14:48:57,443 2 location(s) to search for versions of pyslow5:
2021-09-16T14:48:57,443 * https://pypi.org/simple/pyslow5/
2021-09-16T14:48:57,443 * https://www.piwheels.org/simple/pyslow5/
2021-09-16T14:48:57,443 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/
2021-09-16T14:48:57,444 Getting page https://pypi.org/simple/pyslow5/
2021-09-16T14:48:57,445 Found index url https://pypi.org/simple
2021-09-16T14:48:57,537   Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz#sha256=a72b744ec652ba25eee5060748f8df8a5dc49eee126f48b7682f8d11d6cb434b (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1
2021-09-16T14:48:57,538   Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz#sha256=5b9a25b33d15d6fba531f82deec6244699baedc2dee29dcd848cecc1555e4e60 (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1
2021-09-16T14:48:57,539   Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz#sha256=6f902d9ca38c290253a008a96ff023dcdfcd8d7348b7bde8a0d4ee85eed5ba2b (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0
2021-09-16T14:48:57,539 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/
2021-09-16T14:48:57,539 Getting page https://www.piwheels.org/simple/pyslow5/
2021-09-16T14:48:57,540 Found index url https://www.piwheels.org/simple
2021-09-16T14:48:57,658   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,659   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,659   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,659   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,659   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,660   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,660   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,660   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,660   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,661   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,661   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv6l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,661   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv7l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,661   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv6l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,662   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv7l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,662   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv6l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,662   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv7l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2021-09-16T14:48:57,662 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/
2021-09-16T14:48:57,662 Skipping link: not a file: https://pypi.org/simple/pyslow5/
2021-09-16T14:48:57,680 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates
2021-09-16T14:48:57,698 Collecting pyslow5==0.3.0
2021-09-16T14:48:57,700   Created temporary directory: /tmp/pip-unpack-jj75_kan
2021-09-16T14:48:57,741   Downloading pyslow5-0.3.0.tar.gz (223 kB)
2021-09-16T14:48:58,006   Added pyslow5==0.3.0 from https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz#sha256=6f902d9ca38c290253a008a96ff023dcdfcd8d7348b7bde8a0d4ee85eed5ba2b to build tracker '/tmp/pip-req-tracker-wpdrvn3h'
2021-09-16T14:48:58,007     Running setup.py (path:/tmp/pip-wheel-15zaji3_/pyslow5_fad5589da74e49c486134d063c5dcfca/setup.py) egg_info for package pyslow5
2021-09-16T14:48:58,008     Created temporary directory: /tmp/pip-pip-egg-info-e471r69x
2021-09-16T14:48:58,008     Running command python setup.py egg_info
2021-09-16T14:48:59,366     running egg_info
2021-09-16T14:48:59,368     creating /tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info
2021-09-16T14:48:59,369     writing /tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info/PKG-INFO
2021-09-16T14:48:59,372     writing dependency_links to /tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info/dependency_links.txt
2021-09-16T14:48:59,374     writing requirements to /tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info/requires.txt
2021-09-16T14:48:59,375     writing top-level names to /tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info/top_level.txt
2021-09-16T14:48:59,377     writing manifest file '/tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info/SOURCES.txt'
2021-09-16T14:48:59,385     reading manifest file '/tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info/SOURCES.txt'
2021-09-16T14:48:59,386     reading manifest template 'MANIFEST.in'
2021-09-16T14:48:59,401     adding license file 'LICENSE'
2021-09-16T14:48:59,405     writing manifest file '/tmp/pip-pip-egg-info-e471r69x/pyslow5.egg-info/SOURCES.txt'
2021-09-16T14:48:59,505   Source in /tmp/pip-wheel-15zaji3_/pyslow5_fad5589da74e49c486134d063c5dcfca has version 0.3.0, which satisfies requirement pyslow5==0.3.0 from https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz#sha256=6f902d9ca38c290253a008a96ff023dcdfcd8d7348b7bde8a0d4ee85eed5ba2b
2021-09-16T14:48:59,506   Removed pyslow5==0.3.0 from https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz#sha256=6f902d9ca38c290253a008a96ff023dcdfcd8d7348b7bde8a0d4ee85eed5ba2b from build tracker '/tmp/pip-req-tracker-wpdrvn3h'
2021-09-16T14:48:59,514 Created temporary directory: /tmp/pip-unpack-dl2u6ibg
2021-09-16T14:48:59,515 Building wheels for collected packages: pyslow5
2021-09-16T14:48:59,520   Created temporary directory: /tmp/pip-wheel-expzlqjp
2021-09-16T14:48:59,521   Building wheel for pyslow5 (setup.py): started
2021-09-16T14:48:59,521   Destination directory: /tmp/pip-wheel-expzlqjp
2021-09-16T14:48:59,521   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-15zaji3_/pyslow5_fad5589da74e49c486134d063c5dcfca/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-15zaji3_/pyslow5_fad5589da74e49c486134d063c5dcfca/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-expzlqjp
2021-09-16T14:49:00,832   running bdist_wheel
2021-09-16T14:49:00,836   running build
2021-09-16T14:49:00,836   running build_ext
2021-09-16T14:49:00,842   cythoning python/pyslow5.pyx to python/pyslow5.c
2021-09-16T14:49:01,470   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-15zaji3_/pyslow5_fad5589da74e49c486134d063c5dcfca/python/pyslow5.pxd
2021-09-16T14:49:01,470     tree = Parsing.p_module(s, pxd, full_module_name)
2021-09-16T14:49:05,340   building 'pyslow5' extension
2021-09-16T14:49:05,340   creating build
2021-09-16T14:49:05,340   creating build/temp.linux-armv7l-3.9
2021-09-16T14:49:05,341   creating build/temp.linux-armv7l-3.9/python
2021-09-16T14:49:05,342   creating build/temp.linux-armv7l-3.9/src
2021-09-16T14:49:05,343   creating build/temp.linux-armv7l-3.9/thirdparty
2021-09-16T14:49:05,343   creating build/temp.linux-armv7l-3.9/thirdparty/streamvbyte
2021-09-16T14:49:05,344   creating build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src
2021-09-16T14:49:05,345   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/pyslow5.c -o build/temp.linux-armv7l-3.9/python/pyslow5.o -g -Wall -O2 -std=c99
2021-09-16T14:49:05,831   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-09-16T14:49:05,832                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-09-16T14:49:05,832                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-09-16T14:49:05,832                    from python/pyslow5.c:623:
2021-09-16T14:49:05,832   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-09-16T14:49:05,832      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-09-16T14:49:05,832         |  ^~~~~~~
2021-09-16T14:49:33,944   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5.c -o build/temp.linux-armv7l-3.9/src/slow5.o -g -Wall -O2 -std=c99
2021-09-16T14:49:34,204   src/slow5.c: In function ‘slow5_init’:
2021-09-16T14:49:34,206   src/slow5.c:158:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2021-09-16T14:49:34,207     158 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
2021-09-16T14:49:34,207         |                                                   ^~
2021-09-16T14:49:34,256   src/slow5.c: In function ‘slow5_get_mem’:
2021-09-16T14:49:34,257   src/slow5.c:2156:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-09-16T14:49:34,257    2156 |     if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
2021-09-16T14:49:34,257         |                                                 ^~
2021-09-16T14:49:34,259   In file included from include/slow5/slow5.h:55,
2021-09-16T14:49:34,259                    from src/slow5.c:40:
2021-09-16T14:49:34,259   include/slow5/slow5_error.h:79:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=]
2021-09-16T14:49:34,260      79 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2021-09-16T14:49:34,260         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2021-09-16T14:49:34,260   include/slow5/slow5_error.h:116:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2021-09-16T14:49:34,260     116 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2021-09-16T14:49:34,260         |                         ^~~~~~~~~~~~~~~~~~
2021-09-16T14:49:34,260   src/slow5.c:2157:9: note: in expansion of macro ‘SLOW5_ERROR’
2021-09-16T14:49:34,260    2157 |         SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.",
2021-09-16T14:49:34,261         |         ^~~~~~~~~~~
2021-09-16T14:49:34,274   src/slow5.c: In function ‘slow5_rec_aux_parse’:
2021-09-16T14:49:34,276   include/slow5/slow5_error.h:79:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2021-09-16T14:49:34,276      79 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2021-09-16T14:49:34,276         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2021-09-16T14:49:34,276   include/slow5/slow5_error.h:116:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2021-09-16T14:49:34,276     116 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2021-09-16T14:49:34,277         |                         ^~~~~~~~~~~~~~~~~~
2021-09-16T14:49:34,277   src/slow5.c:2747:17: note: in expansion of macro ‘SLOW5_ERROR’
2021-09-16T14:49:34,277    2747 |                 SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size);
2021-09-16T14:49:34,277         |                 ^~~~~~~~~~~
2021-09-16T14:49:43,651   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_idx.c -o build/temp.linux-armv7l-3.9/src/slow5_idx.o -g -Wall -O2 -std=c99
2021-09-16T14:49:44,662   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_misc.c -o build/temp.linux-armv7l-3.9/src/slow5_misc.o -g -Wall -O2 -std=c99
2021-09-16T14:49:45,182   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_press.c -o build/temp.linux-armv7l-3.9/src/slow5_press.o -g -Wall -O2 -std=c99
2021-09-16T14:49:45,386   src/slow5_press.c: In function ‘slow5_fwrite_compress’:
2021-09-16T14:49:45,387   src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-09-16T14:49:45,387     558 |                 if (bytes != size * nmemb || ferror(fp)) {
2021-09-16T14:49:45,388         |                           ^~
2021-09-16T14:49:45,388   src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-09-16T14:49:45,388     559 |                     if (bytes != size * nmemb) {
2021-09-16T14:49:45,388         |                               ^~
2021-09-16T14:49:45,390   src/slow5_press.c: In function ‘slow5_pread_depress_solo’:
2021-09-16T14:49:45,390   src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-09-16T14:49:45,390     686 |     if ((ret = pread(fd, raw, count, offset)) != count) {
2021-09-16T14:49:45,391         |                                               ^~
2021-09-16T14:49:46,416   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99
2021-09-16T14:49:46,512   In file included from thirdparty/streamvbyte/src/streamvbyte_decode.c:25:
2021-09-16T14:49:46,513   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:22:16: warning: ‘shuffleTable’ defined but not used [-Wunused-variable]
2021-09-16T14:49:46,513      22 | static uint8_t shuffleTable[256][16] = {
2021-09-16T14:49:46,513         |                ^~~~~~~~~~~~
2021-09-16T14:49:46,513   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:2:16: warning: ‘lengthTable’ defined but not used [-Wunused-variable]
2021-09-16T14:49:46,513       2 | static uint8_t lengthTable[256] ={
2021-09-16T14:49:46,514         |                ^~~~~~~~~~~
2021-09-16T14:49:46,596   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99
2021-09-16T14:49:46,689   In file included from thirdparty/streamvbyte/src/streamvbyte_encode.c:25:
2021-09-16T14:49:46,689   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_encode.h:93:16: warning: ‘encodingShuffleTable’ defined but not used [-Wunused-variable]
2021-09-16T14:49:46,689      93 | static uint8_t encodingShuffleTable[256][16] = {
2021-09-16T14:49:46,689         |                ^~~~~~~~~~~~~~~~~~~~
2021-09-16T14:49:46,776   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99
2021-09-16T14:49:46,942   creating build/lib.linux-armv7l-3.9
2021-09-16T14:49:46,943   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/python/pyslow5.o build/temp.linux-armv7l-3.9/src/slow5.o build/temp.linux-armv7l-3.9/src/slow5_idx.o build/temp.linux-armv7l-3.9/src/slow5_misc.o build/temp.linux-armv7l-3.9/src/slow5_press.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -lm -lz -o build/lib.linux-armv7l-3.9/pyslow5.cpython-39-arm-linux-gnueabihf.so
2021-09-16T14:49:47,209   installing to build/bdist.linux-armv7l/wheel
2021-09-16T14:49:47,210   running install
2021-09-16T14:49:47,211   running install_lib
2021-09-16T14:49:47,215   creating build/bdist.linux-armv7l
2021-09-16T14:49:47,215   creating build/bdist.linux-armv7l/wheel
2021-09-16T14:49:47,216   copying build/lib.linux-armv7l-3.9/pyslow5.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-09-16T14:49:47,270   running install_egg_info
2021-09-16T14:49:47,293   running egg_info
2021-09-16T14:49:47,293   writing pyslow5.egg-info/PKG-INFO
2021-09-16T14:49:47,296   writing dependency_links to pyslow5.egg-info/dependency_links.txt
2021-09-16T14:49:47,298   writing requirements to pyslow5.egg-info/requires.txt
2021-09-16T14:49:47,299   writing top-level names to pyslow5.egg-info/top_level.txt
2021-09-16T14:49:47,303   reading manifest file 'pyslow5.egg-info/SOURCES.txt'
2021-09-16T14:49:47,312   reading manifest template 'MANIFEST.in'
2021-09-16T14:49:47,321   adding license file 'LICENSE'
2021-09-16T14:49:47,326   writing manifest file 'pyslow5.egg-info/SOURCES.txt'
2021-09-16T14:49:47,328   Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/pyslow5-0.3.0-py3.9.egg-info
2021-09-16T14:49:47,339   running install_scripts
2021-09-16T14:49:47,379   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-09-16T14:49:47,384   creating build/bdist.linux-armv7l/wheel/pyslow5-0.3.0.dist-info/WHEEL
2021-09-16T14:49:47,386   creating '/tmp/pip-wheel-expzlqjp/pyslow5-0.3.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-09-16T14:49:47,802   adding 'pyslow5.cpython-39-arm-linux-gnueabihf.so'
2021-09-16T14:49:47,821   adding 'pyslow5-0.3.0.dist-info/LICENSE'
2021-09-16T14:49:47,823   adding 'pyslow5-0.3.0.dist-info/METADATA'
2021-09-16T14:49:47,824   adding 'pyslow5-0.3.0.dist-info/WHEEL'
2021-09-16T14:49:47,825   adding 'pyslow5-0.3.0.dist-info/top_level.txt'
2021-09-16T14:49:47,825   adding 'pyslow5-0.3.0.dist-info/RECORD'
2021-09-16T14:49:47,838   removing build/bdist.linux-armv7l/wheel
2021-09-16T14:49:48,077   Building wheel for pyslow5 (setup.py): finished with status 'done'
2021-09-16T14:49:48,089   Created wheel for pyslow5: filename=pyslow5-0.3.0-cp39-cp39-linux_armv7l.whl size=741403 sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de
2021-09-16T14:49:48,089   Stored in directory: /tmp/pip-ephem-wheel-cache-dvyb842n/wheels/86/ae/ad/a4a554edfbacf33ecb4952148e8f029a0ade7866ceb926cfa2
2021-09-16T14:49:48,100 Successfully built pyslow5
2021-09-16T14:49:48,132 Removed build tracker: '/tmp/pip-req-tracker-wpdrvn3h'