2021-09-18T20:16:30,533 Created temporary directory: /tmp/pip-ephem-wheel-cache-9tsqfwea
2021-09-18T20:16:30,536 Created temporary directory: /tmp/pip-req-tracker-3zk4o74f
2021-09-18T20:16:30,536 Initialized build tracking at /tmp/pip-req-tracker-3zk4o74f
2021-09-18T20:16:30,536 Created build tracker: /tmp/pip-req-tracker-3zk4o74f
2021-09-18T20:16:30,537 Entered build tracker: /tmp/pip-req-tracker-3zk4o74f
2021-09-18T20:16:30,537 Created temporary directory: /tmp/pip-wheel-lx_6q0kg
2021-09-18T20:16:30,570 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-18T20:16:30,573 2 location(s) to search for versions of cloudhummingbird:
2021-09-18T20:16:30,573 * https://pypi.org/simple/cloudhummingbird/
2021-09-18T20:16:30,573 * https://www.piwheels.org/simple/cloudhummingbird/
2021-09-18T20:16:30,574 Fetching project page and analyzing links: https://pypi.org/simple/cloudhummingbird/
2021-09-18T20:16:30,574 Getting page https://pypi.org/simple/cloudhummingbird/
2021-09-18T20:16:30,576 Found index url https://pypi.org/simple
2021-09-18T20:16:30,670   Skipping link: No binaries permitted for cloudhummingbird: https://files.pythonhosted.org/packages/f1/1a/e18a18e5699519626d93def6c92a4fb753c3e1e622e54d9b1f9c3bf0eb99/CloudHummingbird-1.0.1-py2.py3-none-any.whl#sha256=86e5edfd235373e82afed23fa96ef58df7c6239fae0f4531be995b6eede064ea (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4)
2021-09-18T20:16:30,671   Found link https://files.pythonhosted.org/packages/3b/15/c287e583601678c2720d04d146478b9b87e11455b8d337ece3a3462acd5c/CloudHummingbird-1.0.1.tar.gz#sha256=ee59708a5f94e1e9f2ece9e38a6e73abf046767f59fc0766b1d7bd5c57712bc6 (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4), version: 1.0.1
2021-09-18T20:16:30,672   Skipping link: No binaries permitted for cloudhummingbird: https://files.pythonhosted.org/packages/a2/38/465017ee058b904be3f3502f7e45cc913547cac09996afea5130bd52b897/CloudHummingbird-1.0.2-py2.py3-none-any.whl#sha256=db94aed86516098e30078525c5fb36d575f2f236c7be71cabc3c98762a6e80c2 (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4)
2021-09-18T20:16:30,672   Found link https://files.pythonhosted.org/packages/5e/a6/eba46b595e4e3d3cf9321806dc42515be5883b43e968780137df8b9529f5/CloudHummingbird-1.0.2.tar.gz#sha256=1929076b410225dd049d48fc9acd8da975d3479bf44c2e3a0af05dc3e021efea (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4), version: 1.0.2
2021-09-18T20:16:30,673   Skipping link: No binaries permitted for cloudhummingbird: https://files.pythonhosted.org/packages/68/a5/36167f86325a7e800b35efc81522f94d4d0b656eb69a8d3321f1d3866290/CloudHummingbird-1.0.3-py2.py3-none-any.whl#sha256=716912bdb32fa2cbdff7e7559aedf5a0b6cce1b1d7396326e2efaff904a70903 (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4)
2021-09-18T20:16:30,673   Found link https://files.pythonhosted.org/packages/04/b2/b8080bd9ec107b1c017f2295eb757d91af5b0d0e0af759a7fb30bdb40893/CloudHummingbird-1.0.3.tar.gz#sha256=012e80a3458a403ddefd4c2b7449126dcd6f69fe363fd1934e606d17aa4ccf39 (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4), version: 1.0.3
2021-09-18T20:16:30,674   Skipping link: No binaries permitted for cloudhummingbird: https://files.pythonhosted.org/packages/78/5c/9c30856691372100b81d74adf9b406202afc4c4fefbe368ed924ebc02e51/CloudHummingbird-1.1.0-py3-none-any.whl#sha256=4ad20e69a7d6d4f4845385bca0b5273c0893cf7e78e593b7be6c5ff4aa9cfc93 (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=3.6, <4)
2021-09-18T20:16:30,674   Found link https://files.pythonhosted.org/packages/11/80/e34b38b1e64af57417bf1dddfe839bfa929f0986c1830e036836e0ee00a2/CloudHummingbird-1.1.0.tar.gz#sha256=ee58730de897469f7f3ee42a39e6fa36e43a406d90fcaeaf547d8b7b88ad254d (from https://pypi.org/simple/cloudhummingbird/) (requires-python:>=3.6, <4), version: 1.1.0
2021-09-18T20:16:30,675 Fetching project page and analyzing links: https://www.piwheels.org/simple/cloudhummingbird/
2021-09-18T20:16:30,675 Getting page https://www.piwheels.org/simple/cloudhummingbird/
2021-09-18T20:16:30,676 Found index url https://www.piwheels.org/simple
2021-09-18T20:16:30,792   Skipping link: No binaries permitted for cloudhummingbird: https://www.piwheels.org/simple/cloudhummingbird/CloudHummingbird-1.0.1-py2.py3-none-any.whl#sha256=86e5edfd235373e82afed23fa96ef58df7c6239fae0f4531be995b6eede064ea (from https://www.piwheels.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4)
2021-09-18T20:16:30,793   Skipping link: No binaries permitted for cloudhummingbird: https://www.piwheels.org/simple/cloudhummingbird/CloudHummingbird-1.0.2-py2.py3-none-any.whl#sha256=db94aed86516098e30078525c5fb36d575f2f236c7be71cabc3c98762a6e80c2 (from https://www.piwheels.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4)
2021-09-18T20:16:30,793   Skipping link: No binaries permitted for cloudhummingbird: https://www.piwheels.org/simple/cloudhummingbird/CloudHummingbird-1.0.3-py2.py3-none-any.whl#sha256=716912bdb32fa2cbdff7e7559aedf5a0b6cce1b1d7396326e2efaff904a70903 (from https://www.piwheels.org/simple/cloudhummingbird/) (requires-python:>=2.7, <4)
2021-09-18T20:16:30,793 Skipping link: not a file: https://www.piwheels.org/simple/cloudhummingbird/
2021-09-18T20:16:30,794 Skipping link: not a file: https://pypi.org/simple/cloudhummingbird/
2021-09-18T20:16:30,809 Given no hashes to check 1 links for project 'cloudhummingbird': discarding no candidates
2021-09-18T20:16:30,825 Collecting cloudhummingbird==1.1.0
2021-09-18T20:16:30,827   Created temporary directory: /tmp/pip-unpack-dxx3fdy9
2021-09-18T20:16:30,999   Downloading CloudHummingbird-1.1.0.tar.gz (46 kB)
2021-09-18T20:16:31,164   Added cloudhummingbird==1.1.0 from https://files.pythonhosted.org/packages/11/80/e34b38b1e64af57417bf1dddfe839bfa929f0986c1830e036836e0ee00a2/CloudHummingbird-1.1.0.tar.gz#sha256=ee58730de897469f7f3ee42a39e6fa36e43a406d90fcaeaf547d8b7b88ad254d to build tracker '/tmp/pip-req-tracker-3zk4o74f'
2021-09-18T20:16:31,165     Running setup.py (path:/tmp/pip-wheel-lx_6q0kg/cloudhummingbird_215644cd72264cd68eadd951402b279c/setup.py) egg_info for package cloudhummingbird
2021-09-18T20:16:31,166     Created temporary directory: /tmp/pip-pip-egg-info-lx7826s0
2021-09-18T20:16:31,166     Running command python setup.py egg_info
2021-09-18T20:16:32,077     running egg_info
2021-09-18T20:16:32,079     creating /tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info
2021-09-18T20:16:32,080     writing /tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/PKG-INFO
2021-09-18T20:16:32,082     writing dependency_links to /tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/dependency_links.txt
2021-09-18T20:16:32,083     writing entry points to /tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/entry_points.txt
2021-09-18T20:16:32,085     writing requirements to /tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/requires.txt
2021-09-18T20:16:32,086     writing top-level names to /tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/top_level.txt
2021-09-18T20:16:32,087     writing manifest file '/tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/SOURCES.txt'
2021-09-18T20:16:32,228     reading manifest file '/tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/SOURCES.txt'
2021-09-18T20:16:32,229     reading manifest template 'MANIFEST.in'
2021-09-18T20:16:32,230     warning: no files found matching 'pyproject.toml'
2021-09-18T20:16:32,234     warning: no files found matching 'Hummingbird/*.md'
2021-09-18T20:16:32,236     adding license file 'LICENSE.txt'
2021-09-18T20:16:32,239     writing manifest file '/tmp/pip-pip-egg-info-lx7826s0/CloudHummingbird.egg-info/SOURCES.txt'
2021-09-18T20:16:32,305   Source in /tmp/pip-wheel-lx_6q0kg/cloudhummingbird_215644cd72264cd68eadd951402b279c has version 1.1.0, which satisfies requirement cloudhummingbird==1.1.0 from https://files.pythonhosted.org/packages/11/80/e34b38b1e64af57417bf1dddfe839bfa929f0986c1830e036836e0ee00a2/CloudHummingbird-1.1.0.tar.gz#sha256=ee58730de897469f7f3ee42a39e6fa36e43a406d90fcaeaf547d8b7b88ad254d
2021-09-18T20:16:32,306   Removed cloudhummingbird==1.1.0 from https://files.pythonhosted.org/packages/11/80/e34b38b1e64af57417bf1dddfe839bfa929f0986c1830e036836e0ee00a2/CloudHummingbird-1.1.0.tar.gz#sha256=ee58730de897469f7f3ee42a39e6fa36e43a406d90fcaeaf547d8b7b88ad254d from build tracker '/tmp/pip-req-tracker-3zk4o74f'
2021-09-18T20:16:32,313 Created temporary directory: /tmp/pip-unpack-_295hyt2
2021-09-18T20:16:32,313 Building wheels for collected packages: cloudhummingbird
2021-09-18T20:16:32,319   Created temporary directory: /tmp/pip-wheel-k0yu6kzr
2021-09-18T20:16:32,319   Building wheel for cloudhummingbird (setup.py): started
2021-09-18T20:16:32,320   Destination directory: /tmp/pip-wheel-k0yu6kzr
2021-09-18T20:16:32,320   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-lx_6q0kg/cloudhummingbird_215644cd72264cd68eadd951402b279c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-lx_6q0kg/cloudhummingbird_215644cd72264cd68eadd951402b279c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-k0yu6kzr
2021-09-18T20:16:33,238   running bdist_wheel
2021-09-18T20:16:33,243   running build
2021-09-18T20:16:33,243   running build_py
2021-09-18T20:16:33,372   creating build
2021-09-18T20:16:33,372   creating build/lib
2021-09-18T20:16:33,373   creating build/lib/Hummingbird
2021-09-18T20:16:33,374   copying Hummingbird/hummingbird.py -> build/lib/Hummingbird
2021-09-18T20:16:33,376   copying Hummingbird/scheduler.py -> build/lib/Hummingbird
2021-09-18T20:16:33,379   copying Hummingbird/profiler.py -> build/lib/Hummingbird
2021-09-18T20:16:33,382   copying Hummingbird/errors.py -> build/lib/Hummingbird
2021-09-18T20:16:33,384   copying Hummingbird/downsample.py -> build/lib/Hummingbird
2021-09-18T20:16:33,387   copying Hummingbird/instance.py -> build/lib/Hummingbird
2021-09-18T20:16:33,389   copying Hummingbird/hummingbird_utils.py -> build/lib/Hummingbird
2021-09-18T20:16:33,392   copying Hummingbird/__init__.py -> build/lib/Hummingbird
2021-09-18T20:16:33,393   copying Hummingbird/validator.py -> build/lib/Hummingbird
2021-09-18T20:16:33,396   creating build/lib/Hummingbird/test
2021-09-18T20:16:33,397   copying Hummingbird/test/test_scheduler.py -> build/lib/Hummingbird/test
2021-09-18T20:16:33,399   copying Hummingbird/test/__init__.py -> build/lib/Hummingbird/test
2021-09-18T20:16:33,401   copying Hummingbird/test/test_instance.py -> build/lib/Hummingbird/test
2021-09-18T20:16:33,403   creating build/lib/Hummingbird/plot
2021-09-18T20:16:33,404   copying Hummingbird/plot/plot.py -> build/lib/Hummingbird/plot
2021-09-18T20:16:33,407   copying Hummingbird/plot/__init__.py -> build/lib/Hummingbird/plot
2021-09-18T20:16:33,409   running egg_info
2021-09-18T20:16:33,424   writing CloudHummingbird.egg-info/PKG-INFO
2021-09-18T20:16:33,426   writing dependency_links to CloudHummingbird.egg-info/dependency_links.txt
2021-09-18T20:16:33,428   writing entry points to CloudHummingbird.egg-info/entry_points.txt
2021-09-18T20:16:33,430   writing requirements to CloudHummingbird.egg-info/requires.txt
2021-09-18T20:16:33,431   writing top-level names to CloudHummingbird.egg-info/top_level.txt
2021-09-18T20:16:33,437   reading manifest file 'CloudHummingbird.egg-info/SOURCES.txt'
2021-09-18T20:16:33,440   reading manifest template 'MANIFEST.in'
2021-09-18T20:16:33,440   warning: no files found matching 'pyproject.toml'
2021-09-18T20:16:33,443   warning: no files found matching 'Hummingbird/*.md'
2021-09-18T20:16:33,445   adding license file 'LICENSE.txt'
2021-09-18T20:16:33,450   writing manifest file 'CloudHummingbird.egg-info/SOURCES.txt'
2021-09-18T20:16:33,456   copying Hummingbird/backend.conf -> build/lib/Hummingbird
2021-09-18T20:16:33,459   creating build/lib/Hummingbird/AWS
2021-09-18T20:16:33,459   copying Hummingbird/AWS/README.md -> build/lib/Hummingbird/AWS
2021-09-18T20:16:33,462   copying Hummingbird/AWS/compute_environment.json -> build/lib/Hummingbird/AWS
2021-09-18T20:16:33,464   copying Hummingbird/AWS/hummingbird-cloudformation.template -> build/lib/Hummingbird/AWS
2021-09-18T20:16:33,466   copying Hummingbird/AWS/job-definition.json -> build/lib/Hummingbird/AWS
2021-09-18T20:16:33,469   copying Hummingbird/AWS/launch-template-data.json -> build/lib/Hummingbird/AWS
2021-09-18T20:16:33,471   creating build/lib/Hummingbird/Azure
2021-09-18T20:16:33,471   copying Hummingbird/Azure/README.md -> build/lib/Hummingbird/Azure
2021-09-18T20:16:33,474   copying Hummingbird/Azure/task.json -> build/lib/Hummingbird/Azure
2021-09-18T20:16:33,476   creating build/lib/Hummingbird/conf
2021-09-18T20:16:33,476   creating build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,477   copying Hummingbird/conf/examples/atac.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,480   copying Hummingbird/conf/examples/atac.task.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,482   copying Hummingbird/conf/examples/atac.task.pct.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,485   copying Hummingbird/conf/examples/atac.task.whole.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,488   copying Hummingbird/conf/examples/bowtie.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,491   copying Hummingbird/conf/examples/bqsr-ApplyBQSR.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,493   copying Hummingbird/conf/examples/bqsr-BaseRecalibrator.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,496   copying Hummingbird/conf/examples/bwa.aws.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,498   copying Hummingbird/conf/examples/bwa.azure.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,500   copying Hummingbird/conf/examples/bwa.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,503   copying Hummingbird/conf/examples/fastqtoubam.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,505   copying Hummingbird/conf/examples/gatk.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,507   copying Hummingbird/conf/examples/gatk_whole.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,510   copying Hummingbird/conf/examples/haplotypecaller.cmd.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,512   copying Hummingbird/conf/examples/haplotypecaller.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,515   copying Hummingbird/conf/examples/mutect2.cmd.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,517   copying Hummingbird/conf/examples/mutect2.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,519   copying Hummingbird/conf/examples/mutect2.gatk4.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,522   copying Hummingbird/conf/examples/picard-markdup.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,524   copying Hummingbird/conf/examples/picard-sortsam.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,527   copying Hummingbird/conf/examples/reheader.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,529   copying Hummingbird/conf/examples/sample.conf.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,532   copying Hummingbird/conf/examples/trimming.json -> build/lib/Hummingbird/conf/examples
2021-09-18T20:16:33,543   installing to build/bdist.linux-armv7l/wheel
2021-09-18T20:16:33,543   running install
2021-09-18T20:16:33,544   running install_lib
2021-09-18T20:16:33,548   creating build/bdist.linux-armv7l
2021-09-18T20:16:33,549   creating build/bdist.linux-armv7l/wheel
2021-09-18T20:16:33,551   creating build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,552   copying build/lib/Hummingbird/hummingbird.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,555   creating build/bdist.linux-armv7l/wheel/Hummingbird/conf
2021-09-18T20:16:33,557   creating build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,558   copying build/lib/Hummingbird/conf/examples/bqsr-BaseRecalibrator.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,561   copying build/lib/Hummingbird/conf/examples/reheader.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,563   copying build/lib/Hummingbird/conf/examples/atac.task.whole.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,565   copying build/lib/Hummingbird/conf/examples/bowtie.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,567   copying build/lib/Hummingbird/conf/examples/gatk_whole.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,569   copying build/lib/Hummingbird/conf/examples/atac.task.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,572   copying build/lib/Hummingbird/conf/examples/mutect2.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,574   copying build/lib/Hummingbird/conf/examples/picard-sortsam.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,576   copying build/lib/Hummingbird/conf/examples/bqsr-ApplyBQSR.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,578   copying build/lib/Hummingbird/conf/examples/fastqtoubam.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,580   copying build/lib/Hummingbird/conf/examples/bwa.azure.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,582   copying build/lib/Hummingbird/conf/examples/atac.task.pct.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,584   copying build/lib/Hummingbird/conf/examples/gatk.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,587   copying build/lib/Hummingbird/conf/examples/picard-markdup.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,589   copying build/lib/Hummingbird/conf/examples/bwa.aws.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,591   copying build/lib/Hummingbird/conf/examples/atac.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,593   copying build/lib/Hummingbird/conf/examples/mutect2.cmd.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,595   copying build/lib/Hummingbird/conf/examples/trimming.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,597   copying build/lib/Hummingbird/conf/examples/bwa.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,599   copying build/lib/Hummingbird/conf/examples/haplotypecaller.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,601   copying build/lib/Hummingbird/conf/examples/haplotypecaller.cmd.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,604   copying build/lib/Hummingbird/conf/examples/sample.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,606   copying build/lib/Hummingbird/conf/examples/mutect2.gatk4.conf.json -> build/bdist.linux-armv7l/wheel/Hummingbird/conf/examples
2021-09-18T20:16:33,608   copying build/lib/Hummingbird/scheduler.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,612   creating build/bdist.linux-armv7l/wheel/Hummingbird/AWS
2021-09-18T20:16:33,613   copying build/lib/Hummingbird/AWS/job-definition.json -> build/bdist.linux-armv7l/wheel/Hummingbird/AWS
2021-09-18T20:16:33,615   copying build/lib/Hummingbird/AWS/README.md -> build/bdist.linux-armv7l/wheel/Hummingbird/AWS
2021-09-18T20:16:33,617   copying build/lib/Hummingbird/AWS/compute_environment.json -> build/bdist.linux-armv7l/wheel/Hummingbird/AWS
2021-09-18T20:16:33,619   copying build/lib/Hummingbird/AWS/hummingbird-cloudformation.template -> build/bdist.linux-armv7l/wheel/Hummingbird/AWS
2021-09-18T20:16:33,622   copying build/lib/Hummingbird/AWS/launch-template-data.json -> build/bdist.linux-armv7l/wheel/Hummingbird/AWS
2021-09-18T20:16:33,624   copying build/lib/Hummingbird/profiler.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,627   copying build/lib/Hummingbird/errors.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,629   copying build/lib/Hummingbird/backend.conf -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,632   creating build/bdist.linux-armv7l/wheel/Hummingbird/test
2021-09-18T20:16:33,633   copying build/lib/Hummingbird/test/test_scheduler.py -> build/bdist.linux-armv7l/wheel/Hummingbird/test
2021-09-18T20:16:33,636   copying build/lib/Hummingbird/test/__init__.py -> build/bdist.linux-armv7l/wheel/Hummingbird/test
2021-09-18T20:16:33,637   copying build/lib/Hummingbird/test/test_instance.py -> build/bdist.linux-armv7l/wheel/Hummingbird/test
2021-09-18T20:16:33,640   creating build/bdist.linux-armv7l/wheel/Hummingbird/Azure
2021-09-18T20:16:33,641   copying build/lib/Hummingbird/Azure/task.json -> build/bdist.linux-armv7l/wheel/Hummingbird/Azure
2021-09-18T20:16:33,643   copying build/lib/Hummingbird/Azure/README.md -> build/bdist.linux-armv7l/wheel/Hummingbird/Azure
2021-09-18T20:16:33,646   copying build/lib/Hummingbird/downsample.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,648   copying build/lib/Hummingbird/instance.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,652   copying build/lib/Hummingbird/hummingbird_utils.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,654   copying build/lib/Hummingbird/__init__.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,656   copying build/lib/Hummingbird/validator.py -> build/bdist.linux-armv7l/wheel/Hummingbird
2021-09-18T20:16:33,658   creating build/bdist.linux-armv7l/wheel/Hummingbird/plot
2021-09-18T20:16:33,659   copying build/lib/Hummingbird/plot/plot.py -> build/bdist.linux-armv7l/wheel/Hummingbird/plot
2021-09-18T20:16:33,662   copying build/lib/Hummingbird/plot/__init__.py -> build/bdist.linux-armv7l/wheel/Hummingbird/plot
2021-09-18T20:16:33,664   running install_egg_info
2021-09-18T20:16:33,673   Copying CloudHummingbird.egg-info to build/bdist.linux-armv7l/wheel/CloudHummingbird-1.1.0-py3.7.egg-info
2021-09-18T20:16:33,687   running install_scripts
2021-09-18T20:16:33,784   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2021-09-18T20:16:33,788   creating build/bdist.linux-armv7l/wheel/CloudHummingbird-1.1.0.dist-info/WHEEL
2021-09-18T20:16:33,791   creating '/tmp/pip-wheel-k0yu6kzr/CloudHummingbird-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-09-18T20:16:33,796   adding 'Hummingbird/__init__.py'
2021-09-18T20:16:33,797   adding 'Hummingbird/backend.conf'
2021-09-18T20:16:33,799   adding 'Hummingbird/downsample.py'
2021-09-18T20:16:33,801   adding 'Hummingbird/errors.py'
2021-09-18T20:16:33,803   adding 'Hummingbird/hummingbird.py'
2021-09-18T20:16:33,805   adding 'Hummingbird/hummingbird_utils.py'
2021-09-18T20:16:33,807   adding 'Hummingbird/instance.py'
2021-09-18T20:16:33,811   adding 'Hummingbird/profiler.py'
2021-09-18T20:16:33,815   adding 'Hummingbird/scheduler.py'
2021-09-18T20:16:33,817   adding 'Hummingbird/validator.py'
2021-09-18T20:16:33,819   adding 'Hummingbird/AWS/README.md'
2021-09-18T20:16:33,820   adding 'Hummingbird/AWS/compute_environment.json'
2021-09-18T20:16:33,822   adding 'Hummingbird/AWS/hummingbird-cloudformation.template'
2021-09-18T20:16:33,823   adding 'Hummingbird/AWS/job-definition.json'
2021-09-18T20:16:33,824   adding 'Hummingbird/AWS/launch-template-data.json'
2021-09-18T20:16:33,826   adding 'Hummingbird/Azure/README.md'
2021-09-18T20:16:33,827   adding 'Hummingbird/Azure/task.json'
2021-09-18T20:16:33,830   adding 'Hummingbird/conf/examples/atac.conf.json'
2021-09-18T20:16:33,832   adding 'Hummingbird/conf/examples/atac.task.conf.json'
2021-09-18T20:16:33,834   adding 'Hummingbird/conf/examples/atac.task.pct.conf.json'
2021-09-18T20:16:33,835   adding 'Hummingbird/conf/examples/atac.task.whole.conf.json'
2021-09-18T20:16:33,837   adding 'Hummingbird/conf/examples/bowtie.conf.json'
2021-09-18T20:16:33,838   adding 'Hummingbird/conf/examples/bqsr-ApplyBQSR.conf.json'
2021-09-18T20:16:33,839   adding 'Hummingbird/conf/examples/bqsr-BaseRecalibrator.conf.json'
2021-09-18T20:16:33,841   adding 'Hummingbird/conf/examples/bwa.aws.conf.json'
2021-09-18T20:16:33,842   adding 'Hummingbird/conf/examples/bwa.azure.conf.json'
2021-09-18T20:16:33,843   adding 'Hummingbird/conf/examples/bwa.conf.json'
2021-09-18T20:16:33,844   adding 'Hummingbird/conf/examples/fastqtoubam.json'
2021-09-18T20:16:33,846   adding 'Hummingbird/conf/examples/gatk.conf.json'
2021-09-18T20:16:33,847   adding 'Hummingbird/conf/examples/gatk_whole.conf.json'
2021-09-18T20:16:33,848   adding 'Hummingbird/conf/examples/haplotypecaller.cmd.conf.json'
2021-09-18T20:16:33,849   adding 'Hummingbird/conf/examples/haplotypecaller.conf.json'
2021-09-18T20:16:33,851   adding 'Hummingbird/conf/examples/mutect2.cmd.conf.json'
2021-09-18T20:16:33,852   adding 'Hummingbird/conf/examples/mutect2.conf.json'
2021-09-18T20:16:33,853   adding 'Hummingbird/conf/examples/mutect2.gatk4.conf.json'
2021-09-18T20:16:33,855   adding 'Hummingbird/conf/examples/picard-markdup.conf.json'
2021-09-18T20:16:33,856   adding 'Hummingbird/conf/examples/picard-sortsam.conf.json'
2021-09-18T20:16:33,857   adding 'Hummingbird/conf/examples/reheader.conf.json'
2021-09-18T20:16:33,858   adding 'Hummingbird/conf/examples/sample.conf.json'
2021-09-18T20:16:33,860   adding 'Hummingbird/conf/examples/trimming.json'
2021-09-18T20:16:33,861   adding 'Hummingbird/plot/__init__.py'
2021-09-18T20:16:33,863   adding 'Hummingbird/plot/plot.py'
2021-09-18T20:16:33,865   adding 'Hummingbird/test/__init__.py'
2021-09-18T20:16:33,866   adding 'Hummingbird/test/test_instance.py'
2021-09-18T20:16:33,868   adding 'Hummingbird/test/test_scheduler.py'
2021-09-18T20:16:33,870   adding 'CloudHummingbird-1.1.0.dist-info/LICENSE.txt'
2021-09-18T20:16:33,872   adding 'CloudHummingbird-1.1.0.dist-info/METADATA'
2021-09-18T20:16:33,873   adding 'CloudHummingbird-1.1.0.dist-info/WHEEL'
2021-09-18T20:16:33,874   adding 'CloudHummingbird-1.1.0.dist-info/entry_points.txt'
2021-09-18T20:16:33,875   adding 'CloudHummingbird-1.1.0.dist-info/top_level.txt'
2021-09-18T20:16:33,876   adding 'CloudHummingbird-1.1.0.dist-info/RECORD'
2021-09-18T20:16:33,878   removing build/bdist.linux-armv7l/wheel
2021-09-18T20:16:33,971   Building wheel for cloudhummingbird (setup.py): finished with status 'done'
2021-09-18T20:16:33,974   Created wheel for cloudhummingbird: filename=CloudHummingbird-1.1.0-py3-none-any.whl size=64400 sha256=fcdac31c320097cfe10c26278462150497c06f93dd2069b1412b07cd628436e5
2021-09-18T20:16:33,975   Stored in directory: /tmp/pip-ephem-wheel-cache-9tsqfwea/wheels/92/80/e0/bd0fb7bbb110fadcdead63fa7adccb1ad795f47e29f382cc37
2021-09-18T20:16:33,986 Successfully built cloudhummingbird
2021-09-18T20:16:33,992 Removed build tracker: '/tmp/pip-req-tracker-3zk4o74f'