2021-09-20T14:50:20,520 Created temporary directory: /tmp/pip-ephem-wheel-cache-34fvoh76 2021-09-20T14:50:20,527 Created temporary directory: /tmp/pip-req-tracker-9h6_6uqo 2021-09-20T14:50:20,528 Initialized build tracking at /tmp/pip-req-tracker-9h6_6uqo 2021-09-20T14:50:20,528 Created build tracker: /tmp/pip-req-tracker-9h6_6uqo 2021-09-20T14:50:20,529 Entered build tracker: /tmp/pip-req-tracker-9h6_6uqo 2021-09-20T14:50:20,530 Created temporary directory: /tmp/pip-wheel-rgg_rvj7 2021-09-20T14:50:20,591 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-09-20T14:50:20,594 2 location(s) to search for versions of ultra-bioinformatics: 2021-09-20T14:50:20,594 * https://pypi.org/simple/ultra-bioinformatics/ 2021-09-20T14:50:20,594 * https://www.piwheels.org/simple/ultra-bioinformatics/ 2021-09-20T14:50:20,595 Fetching project page and analyzing links: https://pypi.org/simple/ultra-bioinformatics/ 2021-09-20T14:50:20,597 Getting page https://pypi.org/simple/ultra-bioinformatics/ 2021-09-20T14:50:20,601 Found index url https://pypi.org/simple 2021-09-20T14:50:20,936 Found link https://files.pythonhosted.org/packages/65/29/65df1f02482f26455e91116a925a37bc462f3661f2974c1876d0b33d8c08/ultra_bioinformatics-0.0.1.tar.gz#sha256=a4e61a998acdde447ba08aa6e43845ac44e27466e38032739c016a6f29972b2a (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.1 2021-09-20T14:50:20,939 Found link https://files.pythonhosted.org/packages/5f/43/f6a6c124ffb15a523e4a9b3feb91d28c60cb49478e4a8d308baea169a489/ultra_bioinformatics-0.0.2.tar.gz#sha256=fa4c15927e73e25d98ce7884765ce5af26986cd646a1162d840d9e019cbd66e3 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2 2021-09-20T14:50:20,942 Found link https://files.pythonhosted.org/packages/6a/58/a30039878dcb4bb59cdbeba01097be3820098a63a1310549f222810f085d/ultra_bioinformatics-0.0.2.1.tar.gz#sha256=4efc237f9759fe47808c22c1ee564412edf39c3dc21b0aa6b2af74009d2d64a7 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.1 2021-09-20T14:50:20,946 Found link https://files.pythonhosted.org/packages/63/eb/35e910e857d69319193e83b7597015c0db24697a23d5c54908b01faaf0db/ultra_bioinformatics-0.0.2.2.tar.gz#sha256=7557c1f0137b290c24bbf5a3255f028c5c26ab03aa14264d0cf7aa0a20499818 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.2 2021-09-20T14:50:20,949 Found link https://files.pythonhosted.org/packages/24/c0/bf7ee45736b40edc7ef301675d1399fe7dfa4caa2232851353b163e8669e/ultra_bioinformatics-0.0.2.3.tar.gz#sha256=a9686a3fafee9539aff6728667008e892f4a5acdf9558edfb48b7f2fdf8fc2b4 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.3 2021-09-20T14:50:20,952 Found link https://files.pythonhosted.org/packages/d3/e3/75cb2bea730add7403f940e5e869099dbdaa458f246aa66f056d127e2661/ultra_bioinformatics-0.0.2.4.tar.gz#sha256=953e1dcad9bcec9c461e9b6492cfb2b76d907859a313c38764d20a9e6dca49b9 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.4 2021-09-20T14:50:20,955 Found link https://files.pythonhosted.org/packages/4a/ac/418045e8389f9b16204a79b7a984397a29e838873de5bce16e43e03f3f45/ultra_bioinformatics-0.0.3.tar.gz#sha256=7589ed76616a5ff9c8a37acc472d909e971fd94d32abf8bab84c4b7a369b935f (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.3 2021-09-20T14:50:20,958 Found link https://files.pythonhosted.org/packages/0e/cb/691d689d951455c649df951dc5af784023a72e0e16911bb0014b015417d4/ultra_bioinformatics-0.0.3.1.tar.gz#sha256=589cc94b3b3e7aced842232bb7781734892ef7887fdfe6d1209f2f17a4e5016d (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.3.1 2021-09-20T14:50:20,962 Found link https://files.pythonhosted.org/packages/3a/41/76487c452ba6bd13a8cf6c12f2ac6979da175d59b8613f0ddd61f98c72bb/ultra_bioinformatics-0.0.3.2.tar.gz#sha256=33b22d9edbc46914c8eef360dbdc1db647a7b49f3ebc221342adee0da0d4a4d4 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.3.2 2021-09-20T14:50:20,965 Found link https://files.pythonhosted.org/packages/05/48/770b1b8065752e56cdebea3749371f31c7645963137073f030fbae7d0e15/ultra_bioinformatics-0.0.3.3.tar.gz#sha256=55bb09883955f2619e9e7f1653901409c71091e5e068100c549913be43bbd043 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.3.3 2021-09-20T14:50:20,968 Found link https://files.pythonhosted.org/packages/db/78/e6872cf882fec0b174ca40465871b82e03d961d9cf0e9eee5c65b69b065e/ultra_bioinformatics-0.0.4.tar.gz#sha256=aa098f808330d42d55bc44f73fc2f1f3b0b44487c04062f82df6c2b42d996598 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.4 2021-09-20T14:50:20,969 Fetching project page and analyzing links: https://www.piwheels.org/simple/ultra-bioinformatics/ 2021-09-20T14:50:20,970 Getting page https://www.piwheels.org/simple/ultra-bioinformatics/ 2021-09-20T14:50:20,972 Found index url https://www.piwheels.org/simple 2021-09-20T14:50:21,164 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.1-py3-none-any.whl#sha256=c2fee34353038cbb8c000fe634d3477196d3a6277c36457d512025083085f769 (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,165 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.2-py3-none-any.whl#sha256=e7d0f58835dafa61c014f4d441510e4a7c7b3276bf20f4be5fce982fcfe3999b (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,166 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.2.1-py3-none-any.whl#sha256=bc2bdf68869624bf5f7d9c8e40ac1468b0cc77170bcee4b4db7b1c64356e5ad7 (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,166 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.2.2-py3-none-any.whl#sha256=16d8a733cfafd30faec3aec067ae69e38c6b94680cb812a3e3c5be2437a91b55 (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,167 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.2.3-py3-none-any.whl#sha256=236c0338e618c39d4e9955ab76964fa9645c99beb20648661ac6910545d7f25a (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,168 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.2.4-py3-none-any.whl#sha256=a70f5c717f458d00193f464904654e4bfad17d5c69dba1d2a4daccfe5c0c9260 (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,168 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.3-py3-none-any.whl#sha256=b142e88ee97092e89d4f5b794daf4c58dbd88f50ce3ba390719c1ee7b298bceb (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,169 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.3.1-py3-none-any.whl#sha256=2886df995afe1823804d8b1c2ff91940a043c350de8967638ab39bf9c1a7d863 (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,170 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.3.2-py3-none-any.whl#sha256=bffc889eb3e35056846f860dac7c766bc67e9b7e135fb371c8857b32aaf63d56 (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,170 Skipping link: No binaries permitted for ultra-bioinformatics: https://www.piwheels.org/simple/ultra-bioinformatics/ultra_bioinformatics-0.0.3.3-py3-none-any.whl#sha256=4ecaa454008af92ca0694aa31a9d930e7b36b2ec34d6ad0baaeef42485e1c8a3 (from https://www.piwheels.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4) 2021-09-20T14:50:21,204 Given no hashes to check 1 links for project 'ultra-bioinformatics': discarding no candidates 2021-09-20T14:50:21,236 Collecting ultra-bioinformatics==0.0.4 2021-09-20T14:50:21,240 Created temporary directory: /tmp/pip-unpack-0kibxjo_ 2021-09-20T14:50:21,454 Downloading ultra_bioinformatics-0.0.4.tar.gz (58 kB) 2021-09-20T14:50:21,654 Added ultra-bioinformatics==0.0.4 from https://files.pythonhosted.org/packages/db/78/e6872cf882fec0b174ca40465871b82e03d961d9cf0e9eee5c65b69b065e/ultra_bioinformatics-0.0.4.tar.gz#sha256=aa098f808330d42d55bc44f73fc2f1f3b0b44487c04062f82df6c2b42d996598 to build tracker '/tmp/pip-req-tracker-9h6_6uqo' 2021-09-20T14:50:21,656 Running setup.py (path:/tmp/pip-wheel-rgg_rvj7/ultra-bioinformatics_7ac3add0195b4510bb02d1c412638bc1/setup.py) egg_info for package ultra-bioinformatics 2021-09-20T14:50:21,658 Created temporary directory: /tmp/pip-pip-egg-info-8pwncnfi 2021-09-20T14:50:21,658 Running command python setup.py egg_info 2021-09-20T14:50:23,749 running egg_info 2021-09-20T14:50:23,759 creating /tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info 2021-09-20T14:50:23,762 writing top-level names to /tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info/top_level.txt 2021-09-20T14:50:23,764 writing /tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info/PKG-INFO 2021-09-20T14:50:23,770 writing requirements to /tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info/requires.txt 2021-09-20T14:50:23,772 writing dependency_links to /tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info/dependency_links.txt 2021-09-20T14:50:23,777 writing manifest file '/tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info/SOURCES.txt' 2021-09-20T14:50:24,145 reading manifest file '/tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info/SOURCES.txt' 2021-09-20T14:50:24,153 writing manifest file '/tmp/pip-pip-egg-info-8pwncnfi/ultra_bioinformatics.egg-info/SOURCES.txt' 2021-09-20T14:50:24,290 Source in /tmp/pip-wheel-rgg_rvj7/ultra-bioinformatics_7ac3add0195b4510bb02d1c412638bc1 has version 0.0.4, which satisfies requirement ultra-bioinformatics==0.0.4 from https://files.pythonhosted.org/packages/db/78/e6872cf882fec0b174ca40465871b82e03d961d9cf0e9eee5c65b69b065e/ultra_bioinformatics-0.0.4.tar.gz#sha256=aa098f808330d42d55bc44f73fc2f1f3b0b44487c04062f82df6c2b42d996598 2021-09-20T14:50:24,292 Removed ultra-bioinformatics==0.0.4 from https://files.pythonhosted.org/packages/db/78/e6872cf882fec0b174ca40465871b82e03d961d9cf0e9eee5c65b69b065e/ultra_bioinformatics-0.0.4.tar.gz#sha256=aa098f808330d42d55bc44f73fc2f1f3b0b44487c04062f82df6c2b42d996598 from build tracker '/tmp/pip-req-tracker-9h6_6uqo' 2021-09-20T14:50:24,314 Created temporary directory: /tmp/pip-unpack-sb4iy4zh 2021-09-20T14:50:24,315 Building wheels for collected packages: ultra-bioinformatics 2021-09-20T14:50:24,323 Created temporary directory: /tmp/pip-wheel-h0o_uo9y 2021-09-20T14:50:24,325 Building wheel for ultra-bioinformatics (setup.py): started 2021-09-20T14:50:24,325 Destination directory: /tmp/pip-wheel-h0o_uo9y 2021-09-20T14:50:24,326 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rgg_rvj7/ultra-bioinformatics_7ac3add0195b4510bb02d1c412638bc1/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rgg_rvj7/ultra-bioinformatics_7ac3add0195b4510bb02d1c412638bc1/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-h0o_uo9y 2021-09-20T14:50:26,459 running bdist_wheel 2021-09-20T14:50:26,474 running build 2021-09-20T14:50:26,475 running build_py 2021-09-20T14:50:26,810 creating build 2021-09-20T14:50:26,810 creating build/lib 2021-09-20T14:50:26,812 creating build/lib/modules 2021-09-20T14:50:26,815 copying modules/classify_alignment2.py -> build/lib/modules 2021-09-20T14:50:26,820 copying modules/range_query_max_search_tree.py -> build/lib/modules 2021-09-20T14:50:26,826 copying modules/create_augmented_gene.py -> build/lib/modules 2021-09-20T14:50:26,835 copying modules/classify_read_with_mams.py -> build/lib/modules 2021-09-20T14:50:26,845 copying modules/help_functions.py -> build/lib/modules 2021-09-20T14:50:26,851 copying modules/mem_wrapper.py -> build/lib/modules 2021-09-20T14:50:26,856 copying modules/sam_output.py -> build/lib/modules 2021-09-20T14:50:26,861 copying modules/__init__.py -> build/lib/modules 2021-09-20T14:50:26,865 copying modules/prefilter_genomic_reads.py -> build/lib/modules 2021-09-20T14:50:26,871 copying modules/colinear_solver.py -> build/lib/modules 2021-09-20T14:50:26,879 copying modules/align.py -> build/lib/modules 2021-09-20T14:50:26,892 running build_scripts 2021-09-20T14:50:26,893 creating build/scripts-3.5 2021-09-20T14:50:26,897 copying and adjusting uLTRA -> build/scripts-3.5 2021-09-20T14:50:26,908 changing mode of build/scripts-3.5/uLTRA from 644 to 755 2021-09-20T14:50:26,916 installing to build/bdist.linux-armv7l/wheel 2021-09-20T14:50:26,917 running install 2021-09-20T14:50:26,918 running install_lib 2021-09-20T14:50:26,926 creating build/bdist.linux-armv7l 2021-09-20T14:50:26,927 creating build/bdist.linux-armv7l/wheel 2021-09-20T14:50:26,934 creating build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,936 copying build/lib/modules/classify_alignment2.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,940 copying build/lib/modules/range_query_max_search_tree.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,946 copying build/lib/modules/create_augmented_gene.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,956 copying build/lib/modules/classify_read_with_mams.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,965 copying build/lib/modules/help_functions.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,972 copying build/lib/modules/mem_wrapper.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,978 copying build/lib/modules/sam_output.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,985 copying build/lib/modules/__init__.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,990 copying build/lib/modules/prefilter_genomic_reads.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:26,996 copying build/lib/modules/colinear_solver.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:27,004 copying build/lib/modules/align.py -> build/bdist.linux-armv7l/wheel/modules 2021-09-20T14:50:27,013 running install_egg_info 2021-09-20T14:50:27,063 running egg_info 2021-09-20T14:50:27,065 writing requirements to ultra_bioinformatics.egg-info/requires.txt 2021-09-20T14:50:27,067 writing ultra_bioinformatics.egg-info/PKG-INFO 2021-09-20T14:50:27,073 writing top-level names to ultra_bioinformatics.egg-info/top_level.txt 2021-09-20T14:50:27,076 writing dependency_links to ultra_bioinformatics.egg-info/dependency_links.txt 2021-09-20T14:50:27,086 reading manifest file 'ultra_bioinformatics.egg-info/SOURCES.txt' 2021-09-20T14:50:27,096 writing manifest file 'ultra_bioinformatics.egg-info/SOURCES.txt' 2021-09-20T14:50:27,099 Copying ultra_bioinformatics.egg-info to build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.4-py3.5.egg-info 2021-09-20T14:50:27,123 running install_scripts 2021-09-20T14:50:27,257 creating build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.4.data 2021-09-20T14:50:27,258 creating build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.4.data/scripts 2021-09-20T14:50:27,260 copying build/scripts-3.5/uLTRA -> build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.4.data/scripts 2021-09-20T14:50:27,269 changing mode of build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.4.data/scripts/uLTRA to 755 2021-09-20T14:50:27,348 creating build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.4.dist-info/WHEEL 2021-09-20T14:50:27,632 Building wheel for ultra-bioinformatics (setup.py): finished with status 'done' 2021-09-20T14:50:27,637 Created wheel for ultra-bioinformatics: filename=ultra_bioinformatics-0.0.4-py3-none-any.whl size=61588 sha256=1f7c324e7dcbaf9c33562668f11ca12327244091cf3ab446d49780cf9f97c012 2021-09-20T14:50:27,638 Stored in directory: /tmp/pip-ephem-wheel-cache-34fvoh76/wheels/b7/d1/6f/2083c0904f10aed208c24f7ebef1f20ef56f7c7913136c669c 2021-09-20T14:50:27,668 Successfully built ultra-bioinformatics 2021-09-20T14:50:27,684 Removed build tracker: '/tmp/pip-req-tracker-9h6_6uqo'