2021-09-20T21:21:18,102 Created temporary directory: /tmp/pip-ephem-wheel-cache-u156c91u 2021-09-20T21:21:18,105 Created temporary directory: /tmp/pip-req-tracker-6orwsrlq 2021-09-20T21:21:18,105 Initialized build tracking at /tmp/pip-req-tracker-6orwsrlq 2021-09-20T21:21:18,106 Created build tracker: /tmp/pip-req-tracker-6orwsrlq 2021-09-20T21:21:18,106 Entered build tracker: /tmp/pip-req-tracker-6orwsrlq 2021-09-20T21:21:18,107 Created temporary directory: /tmp/pip-wheel-2lst_4bf 2021-09-20T21:21:18,142 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-09-20T21:21:18,145 2 location(s) to search for versions of hic-straw: 2021-09-20T21:21:18,145 * https://pypi.org/simple/hic-straw/ 2021-09-20T21:21:18,145 * https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:21:18,146 Fetching project page and analyzing links: https://pypi.org/simple/hic-straw/ 2021-09-20T21:21:18,146 Getting page https://pypi.org/simple/hic-straw/ 2021-09-20T21:21:18,148 Found index url https://pypi.org/simple 2021-09-20T21:21:18,242 Found link https://files.pythonhosted.org/packages/58/12/da9e47221a82011797d19832a2dbc8843b0a96c483874f17010b4921c993/hic-straw-0.0.6.tar.gz#sha256=bc79be50b076a3820852cd0e3b0d743df719b78d49510bf43ac63241f03ab81a (from https://pypi.org/simple/hic-straw/), version: 0.0.6 2021-09-20T21:21:18,243 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/a4/89/1fc2a4e6d9b5379ac4ea0add62658d519095d22a8fef6feb32d1f6d04341/hic_straw-0.0.6-py3-none-any.whl#sha256=fd355fddfb43bb7a152125200a96a959bbe2fa3e4f5e1d41d0af8f27ebecf69e (from https://pypi.org/simple/hic-straw/) 2021-09-20T21:21:18,243 Found link https://files.pythonhosted.org/packages/b4/b5/1784dd8b56f1c3242e4876a816515a453bfb302177900ba89315240e2d69/hic-straw-1.0.0.0.tar.gz#sha256=8fdf3405d344d1555be9b6bb399d13a4dc8ee267f861ab7d324635d873b7a244 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.0 2021-09-20T21:21:18,244 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/f4/64/b77b8acee62ce4088fde83fea0b45b61ac273f676453fc551a1e2402f1df/hic_straw-1.0.0.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=5ef82d45c47d4f761528efdb91cb478e68e179cbf2d18dfb5e4f3d596e0d6307 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,244 Found link https://files.pythonhosted.org/packages/33/d1/0cb9b1ea2021664d748177878ab9aaa3d6a87e5ab96c2579cf229477baa8/hic-straw-1.0.0.1.tar.gz#sha256=f96e1e1879f1264bb3ca040e11a3f6d8d1cc7ad231d8452dd4231613eb94ddc1 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.1 2021-09-20T21:21:18,244 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/0f/27/74d140215ca8b246971566707e35c6865dd2076d59a1dcba4b21d20aed7f/hic_straw-1.0.0.1-cp38-cp38-macosx_10_9_x86_64.whl#sha256=52282d8ca9ed91b121baf08a511bfae34548bd1f96aafb6a98c1ea4403837bf4 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,245 Fetching project page and analyzing links: https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:21:18,245 Getting page https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:21:18,246 Found index url https://www.piwheels.org/simple 2021-09-20T21:21:18,353 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-0.0.6-py3-none-any.whl#sha256=fd355fddfb43bb7a152125200a96a959bbe2fa3e4f5e1d41d0af8f27ebecf69e (from https://www.piwheels.org/simple/hic-straw/) 2021-09-20T21:21:18,353 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b24cdecc8100c133f9261ac5922e102b9a6a9604610045fbc3b7ab87e592b669 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,354 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b24cdecc8100c133f9261ac5922e102b9a6a9604610045fbc3b7ab87e592b669 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,354 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,354 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,355 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=4aa0ae3fcd730523ab35a0839eb5dcd428e0606a267b5f103709447d42289b32 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,355 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=4aa0ae3fcd730523ab35a0839eb5dcd428e0606a267b5f103709447d42289b32 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,355 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp37-cp37m-linux_armv6l.whl#sha256=dbb1fad14d61d1428f96999f9013aaf4a1dd78ca5259eb429aebaada9ff108c2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,355 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp37-cp37m-linux_armv7l.whl#sha256=dbb1fad14d61d1428f96999f9013aaf4a1dd78ca5259eb429aebaada9ff108c2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:21:18,356 Skipping link: not a file: https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:21:18,356 Skipping link: not a file: https://pypi.org/simple/hic-straw/ 2021-09-20T21:21:18,377 Given no hashes to check 1 links for project 'hic-straw': discarding no candidates 2021-09-20T21:21:18,395 Collecting hic-straw==1.0.0.0 2021-09-20T21:21:18,397 Created temporary directory: /tmp/pip-unpack-gy26b54d 2021-09-20T21:21:18,440 Downloading hic-straw-1.0.0.0.tar.gz (15 kB) 2021-09-20T21:21:18,485 Added hic-straw==1.0.0.0 from https://files.pythonhosted.org/packages/b4/b5/1784dd8b56f1c3242e4876a816515a453bfb302177900ba89315240e2d69/hic-straw-1.0.0.0.tar.gz#sha256=8fdf3405d344d1555be9b6bb399d13a4dc8ee267f861ab7d324635d873b7a244 to build tracker '/tmp/pip-req-tracker-6orwsrlq' 2021-09-20T21:21:18,486 Running setup.py (path:/tmp/pip-wheel-2lst_4bf/hic-straw_390dce7e9fa44592ad02a7741a2b954e/setup.py) egg_info for package hic-straw 2021-09-20T21:21:18,487 Created temporary directory: /tmp/pip-pip-egg-info-40gmvetm 2021-09-20T21:21:18,488 Running command python setup.py egg_info 2021-09-20T21:21:19,484 running egg_info 2021-09-20T21:21:19,487 creating /tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info 2021-09-20T21:21:19,487 writing /tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info/PKG-INFO 2021-09-20T21:21:19,490 writing dependency_links to /tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info/dependency_links.txt 2021-09-20T21:21:19,492 writing requirements to /tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info/requires.txt 2021-09-20T21:21:19,493 writing top-level names to /tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info/top_level.txt 2021-09-20T21:21:19,494 writing manifest file '/tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:21:19,501 reading manifest file '/tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:21:19,503 reading manifest template 'MANIFEST.in' 2021-09-20T21:21:19,508 adding license file 'LICENSE' 2021-09-20T21:21:19,510 writing manifest file '/tmp/pip-pip-egg-info-40gmvetm/hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:21:19,578 Source in /tmp/pip-wheel-2lst_4bf/hic-straw_390dce7e9fa44592ad02a7741a2b954e has version 1.0.0.0, which satisfies requirement hic-straw==1.0.0.0 from https://files.pythonhosted.org/packages/b4/b5/1784dd8b56f1c3242e4876a816515a453bfb302177900ba89315240e2d69/hic-straw-1.0.0.0.tar.gz#sha256=8fdf3405d344d1555be9b6bb399d13a4dc8ee267f861ab7d324635d873b7a244 2021-09-20T21:21:19,579 Removed hic-straw==1.0.0.0 from https://files.pythonhosted.org/packages/b4/b5/1784dd8b56f1c3242e4876a816515a453bfb302177900ba89315240e2d69/hic-straw-1.0.0.0.tar.gz#sha256=8fdf3405d344d1555be9b6bb399d13a4dc8ee267f861ab7d324635d873b7a244 from build tracker '/tmp/pip-req-tracker-6orwsrlq' 2021-09-20T21:21:19,585 Created temporary directory: /tmp/pip-unpack-j8so3vby 2021-09-20T21:21:19,585 Building wheels for collected packages: hic-straw 2021-09-20T21:21:19,590 Created temporary directory: /tmp/pip-wheel-_jxddnvm 2021-09-20T21:21:19,590 Building wheel for hic-straw (setup.py): started 2021-09-20T21:21:19,591 Destination directory: /tmp/pip-wheel-_jxddnvm 2021-09-20T21:21:19,591 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2lst_4bf/hic-straw_390dce7e9fa44592ad02a7741a2b954e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2lst_4bf/hic-straw_390dce7e9fa44592ad02a7741a2b954e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_jxddnvm 2021-09-20T21:21:20,559 running bdist_wheel 2021-09-20T21:21:20,564 running build 2021-09-20T21:21:20,564 running build_ext 2021-09-20T21:21:20,572 creating tmp 2021-09-20T21:21:20,572 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpieg0jxri.cpp -o tmp/tmpieg0jxri.o -std=c++14 2021-09-20T21:21:20,743 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpbb6opkwg.cpp -o tmp/tmpbb6opkwg.o -fvisibility=hidden 2021-09-20T21:21:20,826 building 'straw' extension 2021-09-20T21:21:20,850 creating build 2021-09-20T21:21:20,850 creating build/temp.linux-armv7l-3.9 2021-09-20T21:21:20,851 creating build/temp.linux-armv7l-3.9/src 2021-09-20T21:21:20,852 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -Isrc -I/usr/include/python3.9 -c src/straw.cpp -o build/temp.linux-armv7l-3.9/src/straw.o -DVERSION_INFO="1.0.0.0" -std=c++14 -fvisibility=hidden 2021-09-20T21:21:24,963 src/straw.cpp: In function ‘bool readFooter(std::istream&, int64_t, int32_t, int32_t, int32_t, const string&, const string&, const string&, int32_t, int64_t&, indexEntry&, indexEntry&, std::vector&)’: 2021-09-20T21:21:24,964 src/straw.cpp:217:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2021-09-20T21:21:24,964 217 | int64_t nBytes = readInt64FromFile(fin); 2021-09-20T21:21:24,964 | ^~~~~~ 2021-09-20T21:21:24,964 src/straw.cpp:219:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2021-09-20T21:21:24,965 219 | int32_t nBytes = readInt32FromFile(fin); 2021-09-20T21:21:24,965 | ^~~~~~ 2021-09-20T21:21:24,968 src/straw.cpp:232:17: warning: unused variable ‘sizeinbytes’ [-Wunused-variable] 2021-09-20T21:21:24,969 232 | int32_t sizeinbytes = readInt32FromFile(fin); 2021-09-20T21:21:24,969 | ^~~~~~~~~~~ 2021-09-20T21:21:25,028 src/straw.cpp: In function ‘std::map readMatrixHttp(CURL*, int64_t, const string&, int32_t, float&, int32_t&, int32_t&)’: 2021-09-20T21:21:25,028 src/straw.cpp:509:13: warning: unused variable ‘c1’ [-Wunused-variable] 2021-09-20T21:21:25,028 509 | int32_t c1 = readInt32FromFile(bufin); 2021-09-20T21:21:25,028 | ^~ 2021-09-20T21:21:25,029 src/straw.cpp:510:13: warning: unused variable ‘c2’ [-Wunused-variable] 2021-09-20T21:21:25,029 510 | int32_t c2 = readInt32FromFile(bufin); 2021-09-20T21:21:25,029 | ^~ 2021-09-20T21:21:25,031 src/straw.cpp: In function ‘std::map readMatrix(std::istream&, int64_t, const string&, int32_t, float&, int32_t&, int32_t&)’: 2021-09-20T21:21:25,031 src/straw.cpp:537:13: warning: unused variable ‘c1’ [-Wunused-variable] 2021-09-20T21:21:25,031 537 | int32_t c1 = readInt32FromFile(fin); 2021-09-20T21:21:25,032 | ^~ 2021-09-20T21:21:25,032 src/straw.cpp:538:13: warning: unused variable ‘c2’ [-Wunused-variable] 2021-09-20T21:21:25,032 538 | int32_t c2 = readInt32FromFile(fin); 2021-09-20T21:21:25,032 | ^~ 2021-09-20T21:21:39,274 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:21:39,275 from src/straw.cpp:31: 2021-09-20T21:21:39,275 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-09-20T21:21:39,275 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:21:39,275 426 | vector<_Tp, _Alloc>:: 2021-09-20T21:21:39,275 | ^~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:39,469 In file included from /usr/include/c++/10/vector:67, 2021-09-20T21:21:39,469 from src/straw.cpp:31: 2021-09-20T21:21:39,469 /usr/include/c++/10/bits/stl_vector.h: In function ‘bool readFooter(std::istream&, int64_t, int32_t, int32_t, int32_t, const string&, const string&, const string&, int32_t, int64_t&, indexEntry&, indexEntry&, std::vector&)’: 2021-09-20T21:21:39,469 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:21:39,469 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:21:39,469 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:21:39,470 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:21:39,470 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:21:39,470 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:21:39,473 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:21:39,473 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:21:39,473 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:21:39,474 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:21:39,474 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:21:39,474 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:21:40,934 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:21:40,934 from src/straw.cpp:31: 2021-09-20T21:21:40,935 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chromosome}; _Tp = chromosome; _Alloc = std::allocator]’: 2021-09-20T21:21:40,935 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:21:40,935 426 | vector<_Tp, _Alloc>:: 2021-09-20T21:21:40,935 | ^~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:40,935 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:21:41,347 In file included from /usr/include/c++/10/map:60, 2021-09-20T21:21:41,347 from src/straw.cpp:28: 2021-09-20T21:21:41,347 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, chromosome>; _KeyOfValue = std::_Select1st, chromosome> >; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2021-09-20T21:21:41,348 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:41,348 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-09-20T21:21:41,348 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,417 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, chromosome>; _KeyOfValue = std::_Select1st, chromosome> >; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2021-09-20T21:21:41,417 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:41,417 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-09-20T21:21:41,417 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,417 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:41,488 In file included from /usr/include/c++/10/map:61, 2021-09-20T21:21:41,488 from src/straw.cpp:28: 2021-09-20T21:21:41,488 /usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2021-09-20T21:21:41,488 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:41,489 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:21:41,489 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,489 502 | std::tuple(__k), 2021-09-20T21:21:41,489 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,489 503 | std::tuple<>()); 2021-09-20T21:21:41,489 | ~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,552 /usr/include/c++/10/bits/stl_map.h: In function ‘std::map, chromosome> readHeader(std::istream&, int64_t&, std::string&, int32_t&, int32_t&, int64_t&, int64_t&)’: 2021-09-20T21:21:41,553 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:41,553 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:21:41,553 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,553 502 | std::tuple(__k), 2021-09-20T21:21:41,553 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,553 503 | std::tuple<>()); 2021-09-20T21:21:41,553 | ~~~~~~~~~~~~~~~ 2021-09-20T21:21:41,872 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:21:41,873 from src/straw.cpp:31: 2021-09-20T21:21:41,873 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector getChromosomes(std::string)’: 2021-09-20T21:21:41,873 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:21:41,873 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-09-20T21:21:41,873 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,010 In file included from /usr/include/c++/10/map:61, 2021-09-20T21:21:42,010 from src/straw.cpp:28: 2021-09-20T21:21:42,010 /usr/include/c++/10/bits/stl_map.h: In function ‘MatrixZoomData* getMatrixZoomData(HiCFile*, const string&, const string&, std::string, std::string, std::string, int32_t)’: 2021-09-20T21:21:42,011 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:42,011 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:21:42,011 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,011 502 | std::tuple(__k), 2021-09-20T21:21:42,011 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,011 503 | std::tuple<>()); 2021-09-20T21:21:42,011 | ~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,012 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:42,013 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:21:42,013 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,013 502 | std::tuple(__k), 2021-09-20T21:21:42,013 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,013 503 | std::tuple<>()); 2021-09-20T21:21:42,013 | ~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,301 /usr/include/c++/10/bits/stl_map.h: In function ‘void parsePositions(const string&, std::string&, int64_t&, int64_t&, std::map, chromosome>)’: 2021-09-20T21:21:42,301 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:42,302 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:21:42,302 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,302 502 | std::tuple(__k), 2021-09-20T21:21:42,302 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:42,302 503 | std::tuple<>()); 2021-09-20T21:21:42,302 | ~~~~~~~~~~~~~~~ 2021-09-20T21:21:43,382 /usr/include/c++/10/bits/stl_map.h: In function ‘std::vector straw(std::string, std::string, std::string, std::string, std::string, const string&, int32_t)’: 2021-09-20T21:21:43,382 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:21:43,382 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:21:43,383 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:43,383 502 | std::tuple(__k), 2021-09-20T21:21:43,383 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:43,383 503 | std::tuple<>()); 2021-09-20T21:21:43,383 | ~~~~~~~~~~~~~~~ 2021-09-20T21:21:54,247 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:21:54,248 from src/straw.cpp:31: 2021-09-20T21:21:54,248 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-09-20T21:21:54,248 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:21:54,248 426 | vector<_Tp, _Alloc>:: 2021-09-20T21:21:54,248 | ^~~~~~~~~~~~~~~~~~~ 2021-09-20T21:21:54,327 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’: 2021-09-20T21:21:54,328 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:21:54,328 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-09-20T21:21:54,328 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:22:00,290 creating build/lib.linux-armv7l-3.9 2021-09-20T21:22:00,291 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/straw.o -o build/lib.linux-armv7l-3.9/straw.cpython-39-arm-linux-gnueabihf.so -lcurl -lz 2021-09-20T21:22:00,978 installing to build/bdist.linux-armv7l/wheel 2021-09-20T21:22:00,978 running install 2021-09-20T21:22:00,979 running install_lib 2021-09-20T21:22:00,983 creating build/bdist.linux-armv7l 2021-09-20T21:22:00,984 creating build/bdist.linux-armv7l/wheel 2021-09-20T21:22:00,985 copying build/lib.linux-armv7l-3.9/straw.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-09-20T21:22:01,087 running install_headers 2021-09-20T21:22:01,089 creating build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.0.data 2021-09-20T21:22:01,089 creating build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.0.data/headers 2021-09-20T21:22:01,090 copying src/straw.h -> build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.0.data/headers 2021-09-20T21:22:01,092 running install_egg_info 2021-09-20T21:22:01,116 running egg_info 2021-09-20T21:22:01,117 writing hic_straw.egg-info/PKG-INFO 2021-09-20T21:22:01,119 writing dependency_links to hic_straw.egg-info/dependency_links.txt 2021-09-20T21:22:01,120 writing requirements to hic_straw.egg-info/requires.txt 2021-09-20T21:22:01,121 writing top-level names to hic_straw.egg-info/top_level.txt 2021-09-20T21:22:01,125 reading manifest file 'hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:22:01,127 reading manifest template 'MANIFEST.in' 2021-09-20T21:22:01,131 adding license file 'LICENSE' 2021-09-20T21:22:01,133 writing manifest file 'hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:22:01,134 Copying hic_straw.egg-info to build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.0-py3.9.egg-info 2021-09-20T21:22:01,146 running install_scripts 2021-09-20T21:22:01,237 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-09-20T21:22:01,242 creating build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.0.dist-info/WHEEL 2021-09-20T21:22:01,245 creating '/tmp/pip-wheel-_jxddnvm/hic_straw-1.0.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-09-20T21:22:01,931 adding 'straw.cpython-39-arm-linux-gnueabihf.so' 2021-09-20T21:22:01,972 adding 'hic_straw-1.0.0.0.data/headers/straw.h' 2021-09-20T21:22:01,974 adding 'hic_straw-1.0.0.0.dist-info/LICENSE' 2021-09-20T21:22:01,976 adding 'hic_straw-1.0.0.0.dist-info/METADATA' 2021-09-20T21:22:01,977 adding 'hic_straw-1.0.0.0.dist-info/WHEEL' 2021-09-20T21:22:01,978 adding 'hic_straw-1.0.0.0.dist-info/top_level.txt' 2021-09-20T21:22:01,978 adding 'hic_straw-1.0.0.0.dist-info/RECORD' 2021-09-20T21:22:02,002 removing build/bdist.linux-armv7l/wheel 2021-09-20T21:22:02,090 Building wheel for hic-straw (setup.py): finished with status 'done' 2021-09-20T21:22:02,111 Created wheel for hic-straw: filename=hic_straw-1.0.0.0-cp39-cp39-linux_armv7l.whl size=1392692 sha256=63b9a8b712b0ad252026eb358d561833eba65c4c0977a99570646a02ed9351be 2021-09-20T21:22:02,112 Stored in directory: /tmp/pip-ephem-wheel-cache-u156c91u/wheels/1d/ad/3f/3b4ff03bd431cf1037dce6631ec20b04d59f89ca5c8f074b54 2021-09-20T21:22:02,124 Successfully built hic-straw 2021-09-20T21:22:02,178 Removed build tracker: '/tmp/pip-req-tracker-6orwsrlq'