2021-09-20T21:27:31,956 Created temporary directory: /tmp/pip-ephem-wheel-cache-kky5xk9k 2021-09-20T21:27:31,959 Created temporary directory: /tmp/pip-req-tracker-vnj_9m1i 2021-09-20T21:27:31,960 Initialized build tracking at /tmp/pip-req-tracker-vnj_9m1i 2021-09-20T21:27:31,960 Created build tracker: /tmp/pip-req-tracker-vnj_9m1i 2021-09-20T21:27:31,960 Entered build tracker: /tmp/pip-req-tracker-vnj_9m1i 2021-09-20T21:27:31,961 Created temporary directory: /tmp/pip-wheel-lv34dqaz 2021-09-20T21:27:31,994 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-09-20T21:27:31,997 2 location(s) to search for versions of hic-straw: 2021-09-20T21:27:31,997 * https://pypi.org/simple/hic-straw/ 2021-09-20T21:27:31,997 * https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:27:31,998 Fetching project page and analyzing links: https://pypi.org/simple/hic-straw/ 2021-09-20T21:27:31,998 Getting page https://pypi.org/simple/hic-straw/ 2021-09-20T21:27:31,999 Found index url https://pypi.org/simple 2021-09-20T21:27:32,093 Found link https://files.pythonhosted.org/packages/58/12/da9e47221a82011797d19832a2dbc8843b0a96c483874f17010b4921c993/hic-straw-0.0.6.tar.gz#sha256=bc79be50b076a3820852cd0e3b0d743df719b78d49510bf43ac63241f03ab81a (from https://pypi.org/simple/hic-straw/), version: 0.0.6 2021-09-20T21:27:32,094 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/a4/89/1fc2a4e6d9b5379ac4ea0add62658d519095d22a8fef6feb32d1f6d04341/hic_straw-0.0.6-py3-none-any.whl#sha256=fd355fddfb43bb7a152125200a96a959bbe2fa3e4f5e1d41d0af8f27ebecf69e (from https://pypi.org/simple/hic-straw/) 2021-09-20T21:27:32,094 Found link https://files.pythonhosted.org/packages/b4/b5/1784dd8b56f1c3242e4876a816515a453bfb302177900ba89315240e2d69/hic-straw-1.0.0.0.tar.gz#sha256=8fdf3405d344d1555be9b6bb399d13a4dc8ee267f861ab7d324635d873b7a244 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.0 2021-09-20T21:27:32,094 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/f4/64/b77b8acee62ce4088fde83fea0b45b61ac273f676453fc551a1e2402f1df/hic_straw-1.0.0.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=5ef82d45c47d4f761528efdb91cb478e68e179cbf2d18dfb5e4f3d596e0d6307 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,095 Found link https://files.pythonhosted.org/packages/33/d1/0cb9b1ea2021664d748177878ab9aaa3d6a87e5ab96c2579cf229477baa8/hic-straw-1.0.0.1.tar.gz#sha256=f96e1e1879f1264bb3ca040e11a3f6d8d1cc7ad231d8452dd4231613eb94ddc1 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.1 2021-09-20T21:27:32,095 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/0f/27/74d140215ca8b246971566707e35c6865dd2076d59a1dcba4b21d20aed7f/hic_straw-1.0.0.1-cp38-cp38-macosx_10_9_x86_64.whl#sha256=52282d8ca9ed91b121baf08a511bfae34548bd1f96aafb6a98c1ea4403837bf4 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,095 Fetching project page and analyzing links: https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:27:32,096 Getting page https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:27:32,097 Found index url https://www.piwheels.org/simple 2021-09-20T21:27:32,214 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-0.0.6-py3-none-any.whl#sha256=fd355fddfb43bb7a152125200a96a959bbe2fa3e4f5e1d41d0af8f27ebecf69e (from https://www.piwheels.org/simple/hic-straw/) 2021-09-20T21:27:32,214 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b24cdecc8100c133f9261ac5922e102b9a6a9604610045fbc3b7ab87e592b669 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,215 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b24cdecc8100c133f9261ac5922e102b9a6a9604610045fbc3b7ab87e592b669 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,215 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,215 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,215 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp39-cp39-linux_armv6l.whl#sha256=63b9a8b712b0ad252026eb358d561833eba65c4c0977a99570646a02ed9351be (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,216 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp39-cp39-linux_armv7l.whl#sha256=63b9a8b712b0ad252026eb358d561833eba65c4c0977a99570646a02ed9351be (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,216 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=4aa0ae3fcd730523ab35a0839eb5dcd428e0606a267b5f103709447d42289b32 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,216 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=4aa0ae3fcd730523ab35a0839eb5dcd428e0606a267b5f103709447d42289b32 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,216 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp37-cp37m-linux_armv6l.whl#sha256=dbb1fad14d61d1428f96999f9013aaf4a1dd78ca5259eb429aebaada9ff108c2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,216 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp37-cp37m-linux_armv7l.whl#sha256=dbb1fad14d61d1428f96999f9013aaf4a1dd78ca5259eb429aebaada9ff108c2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2021-09-20T21:27:32,217 Skipping link: not a file: https://www.piwheels.org/simple/hic-straw/ 2021-09-20T21:27:32,217 Skipping link: not a file: https://pypi.org/simple/hic-straw/ 2021-09-20T21:27:32,235 Given no hashes to check 1 links for project 'hic-straw': discarding no candidates 2021-09-20T21:27:32,253 Collecting hic-straw==1.0.0.1 2021-09-20T21:27:32,255 Created temporary directory: /tmp/pip-unpack-f61jcwsm 2021-09-20T21:27:32,304 Downloading hic-straw-1.0.0.1.tar.gz (15 kB) 2021-09-20T21:27:32,352 Added hic-straw==1.0.0.1 from https://files.pythonhosted.org/packages/33/d1/0cb9b1ea2021664d748177878ab9aaa3d6a87e5ab96c2579cf229477baa8/hic-straw-1.0.0.1.tar.gz#sha256=f96e1e1879f1264bb3ca040e11a3f6d8d1cc7ad231d8452dd4231613eb94ddc1 to build tracker '/tmp/pip-req-tracker-vnj_9m1i' 2021-09-20T21:27:32,353 Running setup.py (path:/tmp/pip-wheel-lv34dqaz/hic-straw_474222fd53e54b7ab485e0bc7a0fd4eb/setup.py) egg_info for package hic-straw 2021-09-20T21:27:32,354 Created temporary directory: /tmp/pip-pip-egg-info-s58m_aaq 2021-09-20T21:27:32,354 Running command python setup.py egg_info 2021-09-20T21:27:33,334 running egg_info 2021-09-20T21:27:33,337 creating /tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info 2021-09-20T21:27:33,338 writing /tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info/PKG-INFO 2021-09-20T21:27:33,341 writing dependency_links to /tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info/dependency_links.txt 2021-09-20T21:27:33,343 writing requirements to /tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info/requires.txt 2021-09-20T21:27:33,344 writing top-level names to /tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info/top_level.txt 2021-09-20T21:27:33,345 writing manifest file '/tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:27:33,353 reading manifest file '/tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:27:33,354 reading manifest template 'MANIFEST.in' 2021-09-20T21:27:33,359 adding license file 'LICENSE' 2021-09-20T21:27:33,361 writing manifest file '/tmp/pip-pip-egg-info-s58m_aaq/hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:27:33,430 Source in /tmp/pip-wheel-lv34dqaz/hic-straw_474222fd53e54b7ab485e0bc7a0fd4eb has version 1.0.0.1, which satisfies requirement hic-straw==1.0.0.1 from https://files.pythonhosted.org/packages/33/d1/0cb9b1ea2021664d748177878ab9aaa3d6a87e5ab96c2579cf229477baa8/hic-straw-1.0.0.1.tar.gz#sha256=f96e1e1879f1264bb3ca040e11a3f6d8d1cc7ad231d8452dd4231613eb94ddc1 2021-09-20T21:27:33,431 Removed hic-straw==1.0.0.1 from https://files.pythonhosted.org/packages/33/d1/0cb9b1ea2021664d748177878ab9aaa3d6a87e5ab96c2579cf229477baa8/hic-straw-1.0.0.1.tar.gz#sha256=f96e1e1879f1264bb3ca040e11a3f6d8d1cc7ad231d8452dd4231613eb94ddc1 from build tracker '/tmp/pip-req-tracker-vnj_9m1i' 2021-09-20T21:27:33,437 Created temporary directory: /tmp/pip-unpack-m0pvay_f 2021-09-20T21:27:33,437 Building wheels for collected packages: hic-straw 2021-09-20T21:27:33,442 Created temporary directory: /tmp/pip-wheel-f6blbhjb 2021-09-20T21:27:33,443 Building wheel for hic-straw (setup.py): started 2021-09-20T21:27:33,443 Destination directory: /tmp/pip-wheel-f6blbhjb 2021-09-20T21:27:33,443 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-lv34dqaz/hic-straw_474222fd53e54b7ab485e0bc7a0fd4eb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-lv34dqaz/hic-straw_474222fd53e54b7ab485e0bc7a0fd4eb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-f6blbhjb 2021-09-20T21:27:34,409 running bdist_wheel 2021-09-20T21:27:34,413 running build 2021-09-20T21:27:34,413 running build_ext 2021-09-20T21:27:34,420 creating tmp 2021-09-20T21:27:34,421 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmptfun7gdr.cpp -o tmp/tmptfun7gdr.o -std=c++14 2021-09-20T21:27:34,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmplfl67bb0.cpp -o tmp/tmplfl67bb0.o -fvisibility=hidden 2021-09-20T21:27:34,596 building 'straw' extension 2021-09-20T21:27:34,601 creating build 2021-09-20T21:27:34,602 creating build/temp.linux-armv7l-3.9 2021-09-20T21:27:34,602 creating build/temp.linux-armv7l-3.9/src 2021-09-20T21:27:34,603 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -Isrc -I/usr/include/python3.9 -c src/straw.cpp -o build/temp.linux-armv7l-3.9/src/straw.o -DVERSION_INFO="1.0.0.1" -std=c++14 -fvisibility=hidden 2021-09-20T21:27:38,569 src/straw.cpp: In function ‘bool readFooter(std::istream&, int64_t, int32_t, int32_t, int32_t, const string&, const string&, const string&, int32_t, int64_t&, indexEntry&, indexEntry&, std::vector&)’: 2021-09-20T21:27:38,570 src/straw.cpp:217:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2021-09-20T21:27:38,570 217 | int64_t nBytes = readInt64FromFile(fin); 2021-09-20T21:27:38,570 | ^~~~~~ 2021-09-20T21:27:38,570 src/straw.cpp:219:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2021-09-20T21:27:38,570 219 | int32_t nBytes = readInt32FromFile(fin); 2021-09-20T21:27:38,571 | ^~~~~~ 2021-09-20T21:27:38,573 src/straw.cpp:232:17: warning: unused variable ‘sizeinbytes’ [-Wunused-variable] 2021-09-20T21:27:38,573 232 | int32_t sizeinbytes = readInt32FromFile(fin); 2021-09-20T21:27:38,573 | ^~~~~~~~~~~ 2021-09-20T21:27:38,632 src/straw.cpp: In function ‘std::map readMatrixHttp(CURL*, int64_t, const string&, int32_t, float&, int32_t&, int32_t&)’: 2021-09-20T21:27:38,632 src/straw.cpp:509:13: warning: unused variable ‘c1’ [-Wunused-variable] 2021-09-20T21:27:38,633 509 | int32_t c1 = readInt32FromFile(bufin); 2021-09-20T21:27:38,633 | ^~ 2021-09-20T21:27:38,633 src/straw.cpp:510:13: warning: unused variable ‘c2’ [-Wunused-variable] 2021-09-20T21:27:38,633 510 | int32_t c2 = readInt32FromFile(bufin); 2021-09-20T21:27:38,633 | ^~ 2021-09-20T21:27:38,634 src/straw.cpp: In function ‘std::map readMatrix(std::istream&, int64_t, const string&, int32_t, float&, int32_t&, int32_t&)’: 2021-09-20T21:27:38,634 src/straw.cpp:537:13: warning: unused variable ‘c1’ [-Wunused-variable] 2021-09-20T21:27:38,635 537 | int32_t c1 = readInt32FromFile(fin); 2021-09-20T21:27:38,635 | ^~ 2021-09-20T21:27:38,635 src/straw.cpp:538:13: warning: unused variable ‘c2’ [-Wunused-variable] 2021-09-20T21:27:38,635 538 | int32_t c2 = readInt32FromFile(fin); 2021-09-20T21:27:38,635 | ^~ 2021-09-20T21:27:52,935 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:27:52,936 from src/straw.cpp:31: 2021-09-20T21:27:52,936 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-09-20T21:27:52,936 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:27:52,937 426 | vector<_Tp, _Alloc>:: 2021-09-20T21:27:52,937 | ^~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:53,129 In file included from /usr/include/c++/10/vector:67, 2021-09-20T21:27:53,129 from src/straw.cpp:31: 2021-09-20T21:27:53,129 /usr/include/c++/10/bits/stl_vector.h: In function ‘bool readFooter(std::istream&, int64_t, int32_t, int32_t, int32_t, const string&, const string&, const string&, int32_t, int64_t&, indexEntry&, indexEntry&, std::vector&)’: 2021-09-20T21:27:53,130 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:27:53,130 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:27:53,130 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:27:53,130 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:27:53,130 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:27:53,130 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:27:53,131 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:27:53,132 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:27:53,132 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:27:53,132 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:27:53,132 1198 | _M_realloc_insert(end(), __x); 2021-09-20T21:27:53,132 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-09-20T21:27:54,559 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:27:54,559 from src/straw.cpp:31: 2021-09-20T21:27:54,560 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chromosome}; _Tp = chromosome; _Alloc = std::allocator]’: 2021-09-20T21:27:54,560 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:27:54,560 426 | vector<_Tp, _Alloc>:: 2021-09-20T21:27:54,560 | ^~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:54,560 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:27:54,970 In file included from /usr/include/c++/10/map:60, 2021-09-20T21:27:54,970 from src/straw.cpp:28: 2021-09-20T21:27:54,970 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, chromosome>; _KeyOfValue = std::_Select1st, chromosome> >; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2021-09-20T21:27:54,970 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:54,970 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-09-20T21:27:54,971 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,038 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, chromosome>; _KeyOfValue = std::_Select1st, chromosome> >; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2021-09-20T21:27:55,039 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:55,039 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-09-20T21:27:55,039 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,039 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:55,109 In file included from /usr/include/c++/10/map:61, 2021-09-20T21:27:55,109 from src/straw.cpp:28: 2021-09-20T21:27:55,109 /usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = chromosome; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2021-09-20T21:27:55,109 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:55,109 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:27:55,110 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,110 502 | std::tuple(__k), 2021-09-20T21:27:55,110 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,110 503 | std::tuple<>()); 2021-09-20T21:27:55,110 | ~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,172 /usr/include/c++/10/bits/stl_map.h: In function ‘std::map, chromosome> readHeader(std::istream&, int64_t&, std::string&, int32_t&, int32_t&, int64_t&, int64_t&)’: 2021-09-20T21:27:55,172 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:55,172 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:27:55,172 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,173 502 | std::tuple(__k), 2021-09-20T21:27:55,173 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,173 503 | std::tuple<>()); 2021-09-20T21:27:55,173 | ~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,491 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:27:55,491 from src/straw.cpp:31: 2021-09-20T21:27:55,491 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector getChromosomes(std::string)’: 2021-09-20T21:27:55,492 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:27:55,492 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-09-20T21:27:55,492 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,628 In file included from /usr/include/c++/10/map:61, 2021-09-20T21:27:55,628 from src/straw.cpp:28: 2021-09-20T21:27:55,628 /usr/include/c++/10/bits/stl_map.h: In function ‘MatrixZoomData* getMatrixZoomData(HiCFile*, const string&, const string&, std::string, std::string, std::string, int32_t)’: 2021-09-20T21:27:55,629 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:55,629 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:27:55,629 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,629 502 | std::tuple(__k), 2021-09-20T21:27:55,629 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,629 503 | std::tuple<>()); 2021-09-20T21:27:55,629 | ~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,630 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:55,630 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:27:55,630 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,630 502 | std::tuple(__k), 2021-09-20T21:27:55,630 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,630 503 | std::tuple<>()); 2021-09-20T21:27:55,630 | ~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,918 /usr/include/c++/10/bits/stl_map.h: In function ‘void parsePositions(const string&, std::string&, int64_t&, int64_t&, std::map, chromosome>)’: 2021-09-20T21:27:55,918 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:55,918 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:27:55,919 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,919 502 | std::tuple(__k), 2021-09-20T21:27:55,919 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:55,919 503 | std::tuple<>()); 2021-09-20T21:27:55,919 | ~~~~~~~~~~~~~~~ 2021-09-20T21:27:56,999 /usr/include/c++/10/bits/stl_map.h: In function ‘std::vector straw(std::string, std::string, std::string, std::string, std::string, const string&, int32_t)’: 2021-09-20T21:27:56,999 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2021-09-20T21:27:56,999 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-09-20T21:27:57,000 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:57,000 502 | std::tuple(__k), 2021-09-20T21:27:57,000 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:27:57,000 503 | std::tuple<>()); 2021-09-20T21:27:57,000 | ~~~~~~~~~~~~~~~ 2021-09-20T21:28:07,914 In file included from /usr/include/c++/10/vector:72, 2021-09-20T21:28:07,914 from src/straw.cpp:31: 2021-09-20T21:28:07,914 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-09-20T21:28:07,914 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-09-20T21:28:07,914 426 | vector<_Tp, _Alloc>:: 2021-09-20T21:28:07,915 | ^~~~~~~~~~~~~~~~~~~ 2021-09-20T21:28:07,988 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’: 2021-09-20T21:28:07,989 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-09-20T21:28:07,989 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-09-20T21:28:07,989 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-09-20T21:28:13,868 creating build/lib.linux-armv7l-3.9 2021-09-20T21:28:13,868 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/straw.o -o build/lib.linux-armv7l-3.9/straw.cpython-39-arm-linux-gnueabihf.so -lcurl -lz 2021-09-20T21:28:14,498 installing to build/bdist.linux-armv7l/wheel 2021-09-20T21:28:14,498 running install 2021-09-20T21:28:14,499 running install_lib 2021-09-20T21:28:14,504 creating build/bdist.linux-armv7l 2021-09-20T21:28:14,504 creating build/bdist.linux-armv7l/wheel 2021-09-20T21:28:14,505 copying build/lib.linux-armv7l-3.9/straw.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-09-20T21:28:14,604 running install_headers 2021-09-20T21:28:14,606 creating build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.1.data 2021-09-20T21:28:14,606 creating build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.1.data/headers 2021-09-20T21:28:14,608 copying src/straw.h -> build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.1.data/headers 2021-09-20T21:28:14,609 running install_egg_info 2021-09-20T21:28:14,633 running egg_info 2021-09-20T21:28:14,634 writing hic_straw.egg-info/PKG-INFO 2021-09-20T21:28:14,636 writing dependency_links to hic_straw.egg-info/dependency_links.txt 2021-09-20T21:28:14,638 writing requirements to hic_straw.egg-info/requires.txt 2021-09-20T21:28:14,639 writing top-level names to hic_straw.egg-info/top_level.txt 2021-09-20T21:28:14,643 reading manifest file 'hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:28:14,645 reading manifest template 'MANIFEST.in' 2021-09-20T21:28:14,650 adding license file 'LICENSE' 2021-09-20T21:28:14,652 writing manifest file 'hic_straw.egg-info/SOURCES.txt' 2021-09-20T21:28:14,654 Copying hic_straw.egg-info to build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.1-py3.9.egg-info 2021-09-20T21:28:14,667 running install_scripts 2021-09-20T21:28:14,751 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-09-20T21:28:14,756 creating build/bdist.linux-armv7l/wheel/hic_straw-1.0.0.1.dist-info/WHEEL 2021-09-20T21:28:14,759 creating '/tmp/pip-wheel-f6blbhjb/hic_straw-1.0.0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-09-20T21:28:15,431 adding 'straw.cpython-39-arm-linux-gnueabihf.so' 2021-09-20T21:28:15,472 adding 'hic_straw-1.0.0.1.data/headers/straw.h' 2021-09-20T21:28:15,475 adding 'hic_straw-1.0.0.1.dist-info/LICENSE' 2021-09-20T21:28:15,476 adding 'hic_straw-1.0.0.1.dist-info/METADATA' 2021-09-20T21:28:15,476 adding 'hic_straw-1.0.0.1.dist-info/WHEEL' 2021-09-20T21:28:15,477 adding 'hic_straw-1.0.0.1.dist-info/top_level.txt' 2021-09-20T21:28:15,478 adding 'hic_straw-1.0.0.1.dist-info/RECORD' 2021-09-20T21:28:15,495 removing build/bdist.linux-armv7l/wheel 2021-09-20T21:28:15,585 Building wheel for hic-straw (setup.py): finished with status 'done' 2021-09-20T21:28:15,606 Created wheel for hic-straw: filename=hic_straw-1.0.0.1-cp39-cp39-linux_armv7l.whl size=1392735 sha256=d7d53b7818cd2a1951de14440a79520320d9cb53dcc2d58b35c105769c3393b2 2021-09-20T21:28:15,606 Stored in directory: /tmp/pip-ephem-wheel-cache-kky5xk9k/wheels/a5/91/da/9f483f081ecec1ec717fdd88b9c6012b95625454498d4d55f3 2021-09-20T21:28:15,618 Successfully built hic-straw 2021-09-20T21:28:15,669 Removed build tracker: '/tmp/pip-req-tracker-vnj_9m1i'