2021-09-24T22:58:02,354 Created temporary directory: /tmp/pip-ephem-wheel-cache-fn58wibv
2021-09-24T22:58:02,357 Created temporary directory: /tmp/pip-req-tracker-6qtry1zn
2021-09-24T22:58:02,358 Initialized build tracking at /tmp/pip-req-tracker-6qtry1zn
2021-09-24T22:58:02,358 Created build tracker: /tmp/pip-req-tracker-6qtry1zn
2021-09-24T22:58:02,358 Entered build tracker: /tmp/pip-req-tracker-6qtry1zn
2021-09-24T22:58:02,359 Created temporary directory: /tmp/pip-wheel-bj_iwfi5
2021-09-24T22:58:02,391 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-24T22:58:02,394 2 location(s) to search for versions of gemmi:
2021-09-24T22:58:02,394 * https://pypi.org/simple/gemmi/
2021-09-24T22:58:02,394 * https://www.piwheels.org/simple/gemmi/
2021-09-24T22:58:02,394 Fetching project page and analyzing links: https://pypi.org/simple/gemmi/
2021-09-24T22:58:02,395 Getting page https://pypi.org/simple/gemmi/
2021-09-24T22:58:02,397 Found index url https://pypi.org/simple
2021-09-24T22:58:02,607   Found link https://files.pythonhosted.org/packages/3d/74/21e7705118e1f4ac86f03f99a71dc2ba33b8a73fef727be638ee054886e6/gemmi-0.1.2.tar.gz#sha256=2cf46e879e036f7d3bd656c59d04ffe7f3beee8ba41f2cb4475cc5b2c97154f3 (from https://pypi.org/simple/gemmi/), version: 0.1.2
2021-09-24T22:58:02,607   Found link https://files.pythonhosted.org/packages/13/89/4369460dd34f3e7f46c4ec44765cf9f79e392cf3faa8b3792285db77c61f/gemmi-0.1.3.tar.gz#sha256=238243f3814b9e2ef6aab1448a1080da90190e60e32b1d22a145f5d59b17369f (from https://pypi.org/simple/gemmi/), version: 0.1.3
2021-09-24T22:58:02,607   Found link https://files.pythonhosted.org/packages/fb/18/819ab7731075516bb422586a97a4e59313259fa60e49642e26859fe0ef76/gemmi-0.1.4.tar.gz#sha256=e1fcbb530fc2d17cea010410452db8dfa35d7971e58a5c993e3d3650fd49b2fb (from https://pypi.org/simple/gemmi/), version: 0.1.4
2021-09-24T22:58:02,608   Found link https://files.pythonhosted.org/packages/d4/d5/85a0fecb747b415fcc6e3fee9f48edab936e6339ec50736abe1dcfc0d460/gemmi-0.1.5.tar.gz#sha256=f13e5f7405269b24a790faa9620474b9f2a4ad6b31c012b85cfab559a2995d64 (from https://pypi.org/simple/gemmi/), version: 0.1.5
2021-09-24T22:58:02,608   Found link https://files.pythonhosted.org/packages/e5/96/664c971ddae50eb00ff9ee39ce8db4e3f481a1ca740583081a1a84146d39/gemmi-0.1.6.tar.gz#sha256=4b79dd9820663b9aaba54015feba8b7608508ead32d3110fc9d2739400c242fd (from https://pypi.org/simple/gemmi/), version: 0.1.6
2021-09-24T22:58:02,608   Found link https://files.pythonhosted.org/packages/e5/41/e51478a35846a23ef2764d9a36ced90e63eafd49c7a4c85559b0566c3884/gemmi-0.1.7.tar.gz#sha256=75da3d78d9f72d3d111b2a8175408b2320b9a00b97649fa3ccdc659a31c02458 (from https://pypi.org/simple/gemmi/), version: 0.1.7
2021-09-24T22:58:02,609   Found link https://files.pythonhosted.org/packages/20/bd/36cb4b950bbe78d5a4e3fd1c127100894fc97d059db57771fa1fd1ce9f2b/gemmi-0.2.0.tar.gz#sha256=c5de4d3f56fb36d5d61f8be110dc14af630ece92755f2913fa4f76fc8340f84a (from https://pypi.org/simple/gemmi/), version: 0.2.0
2021-09-24T22:58:02,609   Found link https://files.pythonhosted.org/packages/d1/2a/7cb4d0fbc88af06fe42971bfebbbefa670a156b396a9d59fb428809977c4/gemmi-0.2.1.tar.gz#sha256=8c5248edf619f86d7e64c6bf9ef931ac189c8928ae136efa28c4fb5365ffd7fa (from https://pypi.org/simple/gemmi/), version: 0.2.1
2021-09-24T22:58:02,609   Found link https://files.pythonhosted.org/packages/09/bd/2d15c8e32c28b11d3f781293a3c828834874bf0c17d193a65a0ab4e781df/gemmi-0.2.2.tar.gz#sha256=b520334b83c42384f26b0d72c0684c0964fdd913d71cffc39b7af71792fc82fc (from https://pypi.org/simple/gemmi/), version: 0.2.2
2021-09-24T22:58:02,609   Found link https://files.pythonhosted.org/packages/2b/d5/15ac654339e17b64f6c4c3d07cea51f6f329eeee1ba01ad58536279fd400/gemmi-0.2.3.tar.gz#sha256=f86691a7786eca8737bebad8401ccff021ae5b629fde9ec0729d3e22ee43e674 (from https://pypi.org/simple/gemmi/), version: 0.2.3
2021-09-24T22:58:02,610   Found link https://files.pythonhosted.org/packages/32/fa/781063687c6e47133a8c39b142a10573546153dde6f5558e9802690bb184/gemmi-0.2.4.tar.gz#sha256=38822f8d43891c8511fc480428511a3c5345751fcd660076cb547fd1fb5ffbc6 (from https://pypi.org/simple/gemmi/), version: 0.2.4
2021-09-24T22:58:02,610   Found link https://files.pythonhosted.org/packages/8b/d5/92f78ebb4734212283301730b193bd44f3ea74161bfd413939a88e976f67/gemmi-0.2.7.tar.gz#sha256=249751bec0559c678ec258926e1748baaad11cfd3b3e2fae569352f5516c44ba (from https://pypi.org/simple/gemmi/), version: 0.2.7
2021-09-24T22:58:02,610   Found link https://files.pythonhosted.org/packages/4b/4b/51d357ef35fcf27a5325426b9326498ab1482be37efbc06a92202f921407/gemmi-0.2.8.tar.gz#sha256=78279babad10cdd4491fde300892aa82711c6c587bbc85824df831082ae8bd3c (from https://pypi.org/simple/gemmi/), version: 0.2.8
2021-09-24T22:58:02,611   Found link https://files.pythonhosted.org/packages/e0/9c/6ea8ea2bbda7ab9eb8b548d899cc328aabd9cf04c720e1cd3287fcd00544/gemmi-0.3.0.tar.gz#sha256=da4f693270b50a5e1d1c7b76184bf00836ec9366ec6081d413460d2bd73a9e14 (from https://pypi.org/simple/gemmi/), version: 0.3.0
2021-09-24T22:58:02,611   Found link https://files.pythonhosted.org/packages/e5/ed/6a91e0fe126a30842c93bfa3865dab81d8383a12026c034edfdf5bf60f85/gemmi-0.3.1.tar.gz#sha256=2b9777962d56b3e0d32122757830e63a03eb281cb18abe822cd3429ddfcc56a9 (from https://pypi.org/simple/gemmi/), version: 0.3.1
2021-09-24T22:58:02,611   Found link https://files.pythonhosted.org/packages/5d/86/6cef13dcfd9b5f3101e826f35fd54088942496489b9307480185fe63d2ed/gemmi-0.3.2.tar.gz#sha256=b626f55807abf58f2510c90bcf383af50f132bb2a9ff1d6a8a53ac50a591a217 (from https://pypi.org/simple/gemmi/), version: 0.3.2
2021-09-24T22:58:02,611   Found link https://files.pythonhosted.org/packages/af/9d/ce0bdf384249da75e4584b624f5a144366a3c8eceff2dff19236aff08dd1/gemmi-0.3.3.tar.gz#sha256=c8de0da30464e49532af856e47b3815df9c042690169a85dfc3fac7c83066251 (from https://pypi.org/simple/gemmi/), version: 0.3.3
2021-09-24T22:58:02,612   Found link https://files.pythonhosted.org/packages/b3/b8/1f41f9a0849c5011cb890f89b6548c8dec1b52ee4bf28cb0ebe3728016e9/gemmi-0.3.4.tar.gz#sha256=94184ef130c341b67eddf0fbab41b57d47c36ab3a53088af315065b50e7c117c (from https://pypi.org/simple/gemmi/), version: 0.3.4
2021-09-24T22:58:02,612   Found link https://files.pythonhosted.org/packages/f4/f0/f4cd4d29e53707efccb2e6d4b2c185851dc1ef02f7aa041b9803fb1a8590/gemmi-0.3.5.tar.gz#sha256=f78b590b4594ec016dcf8b3be10b5eb23e54e2b19dbc73647da9bbf15ac4f824 (from https://pypi.org/simple/gemmi/), version: 0.3.5
2021-09-24T22:58:02,612   Found link https://files.pythonhosted.org/packages/39/b1/9ca0ad395150af606cf85a2e45c2dfaab02492d36ff264efdcf25f7479c1/gemmi-0.3.6.tar.gz#sha256=b290c9ebf03555ba308f9e65e9eaf31ae40acf89e7d9a4b5536e0096dea7d3e2 (from https://pypi.org/simple/gemmi/), version: 0.3.6
2021-09-24T22:58:02,612   Found link https://files.pythonhosted.org/packages/99/ff/0da30f43421b952256ba77edf0eee9bc0711715a4687489ee33037a1f132/gemmi-0.3.7.tar.gz#sha256=8461d66b7bf033cb20d9b62a5fe65474de09e59b90702651f2317ca1e578f451 (from https://pypi.org/simple/gemmi/), version: 0.3.7
2021-09-24T22:58:02,613   Found link https://files.pythonhosted.org/packages/06/4f/5e2e02aa93bcdf27b54f810ecda6e3d08b962d8ef27c9fa731f04523dc80/gemmi-0.3.8.tar.gz#sha256=95a3baada9756ab68f1061161fdddbe3532ffd7c70c2271256f51781e11d7dc2 (from https://pypi.org/simple/gemmi/), version: 0.3.8
2021-09-24T22:58:02,613   Found link https://files.pythonhosted.org/packages/c0/4d/7567aed9911e6f62021508d72deae27d7f1e5dcb41032c4d642c01158408/gemmi-0.4.0.post1.tar.gz#sha256=fe4aab685772be9002ae047c86282061a54a8472c41e71dc7f4e2426a26a7626 (from https://pypi.org/simple/gemmi/), version: 0.4.0.post1
2021-09-24T22:58:02,613   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f5/da/3fb440c7b946febcc4fdb3f4928b1e93b2627ccdf26d69962f3c05b8f077/gemmi-0.4.1-cp36-cp36m-win32.whl#sha256=7fd237c9df1a14c4fdb3ac71999e492d2c704924d99cbc3c56e2b3068e6732cf (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,613   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/88/8c/72cd48a1e89ad92f24e67d15545b9e3f478f256fb4729dbbb4985a0efe2f/gemmi-0.4.1-cp36-cp36m-win_amd64.whl#sha256=0e787ecd22313c52bfeae3408a3de06ec676e793822a245886bccfe5bd8cd79a (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,614   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cb/84/0162cc2197241200740655ebe6cfd33342ddb152feca089f98aab91f56b0/gemmi-0.4.1-cp37-cp37m-win32.whl#sha256=f818934948b41087b9e2d1fb4a14db70c822f6cf153658a649d607d098d9bfd1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,614   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/3a/c69ec458774b60d61a929ac2357d0b9c0a0b5187e55cdb75e138cefee2d3/gemmi-0.4.1-cp37-cp37m-win_amd64.whl#sha256=81d236d7ffe05be29cd3480c2821276337f661e6fcb0881c5e32c360b7be7378 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,614   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c2/a2/55410bfd6be3391475c2a005fcde251f843e0d117707dacb07bb880d2b21/gemmi-0.4.1-cp38-cp38-win32.whl#sha256=980c890ffc5034940e756a887670406939f3a95ce60493ab98cd8f2e4f2d7830 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,614   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/a4/361f66459b444340a29c1dbeb81918dccfab580f92752571a361b53c80fe/gemmi-0.4.1-cp38-cp38-win_amd64.whl#sha256=28de811e9a1c142a311cb4ed52f367788d9911de9cd17ad84566afae1ce97b15 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,615   Found link https://files.pythonhosted.org/packages/2f/d5/4ca93e1691bd8cb2d1e06ce4ff816eca300aa4e09416caf45bbb6451f013/gemmi-0.4.1.tar.gz#sha256=65f36f61e1b88913ab697bfb846553e15398ca27fac952a1d386a5d15779951b (from https://pypi.org/simple/gemmi/), version: 0.4.1
2021-09-24T22:58:02,615   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/22/03/599bf3752327fdbc408133daf5d6a7b950d72c4d81f20d8d3b2d8e95be85/gemmi-0.4.2-cp27-cp27m-manylinux2010_x86_64.whl#sha256=2c3fe451e560f0cb316f425afa8f95ad0138c5e14baf15bad8add3b16a002820 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,615   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/aa/f03b573d7333211fda34ad2c7dddbb4b7310fcf9caf7e938318208819049/gemmi-0.4.2-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=f7faad54418319bc8ff1b7e5b1cb4f4cbac4653f4edf528e911f040f5c9ce012 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,615   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/34/eb/d55b627cd8cb0f9bd3fc076afdd8b3b999316d6c4c24b6b703b97730ffab/gemmi-0.4.2-cp35-cp35m-manylinux2010_x86_64.whl#sha256=65d303507bbedb01265a59e33f9c087957fbcffe240366a802e240fa032eca1c (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,615   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/6a/fe1a65806633ea2129507b0f8b4034afdbf383e474a12152839ee50a52eb/gemmi-0.4.2-cp36-cp36m-manylinux2010_x86_64.whl#sha256=09fd610301a230cb7890f2d7f6dd7ae98ead9bc59f3fc37790f8a95dd4017eac (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,616   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/10/59/a4976acb0891bc600c161f08c341666daf419885f07a105e335e1aeeecb7/gemmi-0.4.2-cp36-cp36m-win32.whl#sha256=7143c3b674f428a420ac13d72fb0d327e3c842f014e2dac1fcf18453d3671d6f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,616   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/f9/0e3c3e3cbb2116fa23a1fe815542a971a5775cd7ada9d02ffd5d58fcde85/gemmi-0.4.2-cp36-cp36m-win_amd64.whl#sha256=326b19d2fb0b8714f6a4631b3e0e2283b11424936cb994d0a330d6a70cc56986 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,616   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/95/85635908935957b4ccc1700dafdcd0c309e00a4a3291aa7a8d6c65a5f089/gemmi-0.4.2-cp37-cp37m-manylinux2010_x86_64.whl#sha256=d61e759f705dc2fd16c94947550a258668ec6e2d4085addac6dc5d746f308149 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,616   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bf/5e/2dcb2454003be5505eb7a75b5eecde74486d2a1bea2f189fc30c749076e6/gemmi-0.4.2-cp37-cp37m-win32.whl#sha256=e9eecdc0afdf6d05b0b668462fc45f48c32dcb22a153e6138ffd590dc220b957 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,616   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3c/8d/055161b661f3dcebbd1cfa3c55ba02ab7f434d87147481b3566080a4ccac/gemmi-0.4.2-cp37-cp37m-win_amd64.whl#sha256=18a9f24cca2ad93f5feec70abe64eb75c1547509e4530898e4b5566696ad26a1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,617   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ce/82/a45cb30c350b56f4dc628986b84b91310b88e1b2ac73ae3b37c3a1ac8585/gemmi-0.4.2-cp38-cp38-manylinux2010_x86_64.whl#sha256=c922d52b726ee554dfcbe8e01af11bb32b2ddbd9d6377ceb7db836b5bf2b15b5 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,617   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9a/39/784a739b8d83175667ef1cc85a53acbe79b9437292031225b3ed552bc035/gemmi-0.4.2-cp38-cp38-win32.whl#sha256=5b586c704add91aa59ca14cf7f03142512e9785329b42a8cb9007453548511e9 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,617   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/62/8911a99982bc95e629f41a7096f0f907cf4b001ed6c0087e0a2763c943e1/gemmi-0.4.2-cp38-cp38-win_amd64.whl#sha256=06c0efb154804fab1c74c816bde974089e0653fb58c8f3c0ad9795e7c5678217 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,617   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/95/9b/d75a5882a9bb13d47e99e0552b516e330004b411e4547b37a3743c74976b/gemmi-0.4.2-cp39-cp39-manylinux2010_x86_64.whl#sha256=ffca3e4973bfb1034044815b087370de5af12143a18f1b37393a5d2f0d4e03df (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,617   Found link https://files.pythonhosted.org/packages/a4/ac/b850ac03ad0f899c0c8f699af60b5c515291c74470601e3b12803d6fca2e/gemmi-0.4.2.tar.gz#sha256=26e1402e48a54132c1a85c7ae1f6d939b3fae4b1fb8d5fa33751cbebebac52ee (from https://pypi.org/simple/gemmi/), version: 0.4.2
2021-09-24T22:58:02,618   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/23/72/c5e726b2722bdfbbb82847582ff64caaf60f70ca38adf11946561fbc75ce/gemmi-0.4.3-cp27-cp27m-manylinux2010_x86_64.whl#sha256=8a2e3b4520e40b32fc5202ae916c8e654b382ece6e6bcb2c5938d5915556c792 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,618   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b7/cf/5a9f3534db7e32658104b69e8a631c4fcf9a4bff7b8d38dca572bb6ed5d7/gemmi-0.4.3-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=27b97d8d1e5d1490d51a39c07ebc7640dd29b35b058bacb06db9b4ab21b0c118 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,618   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d4/8b/c55499a4d0d2a155c4c4ce220a2a942f0026909f4ec849609fc6688eb5a4/gemmi-0.4.3-cp35-cp35m-manylinux2010_x86_64.whl#sha256=182acd66e655a5cd5efd233e4baa0e1c153e8e15053767d2b3e6b5776f57176b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,618   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c3/c4/d3239cd44ce93e14454e2f6596a723f5245776fe822238ac0473ef6d81d4/gemmi-0.4.3-cp36-cp36m-manylinux2010_x86_64.whl#sha256=4875dd21b03ce53882a4569978d0c7f4db1f9984605721989da6836835a24ff6 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,619   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/b9/4821a0951160692524e8394629b952337ad0fbe111b5cf26dc56a9c8e59e/gemmi-0.4.3-cp36-cp36m-win32.whl#sha256=65466099cb7f64117693b55e2b6c41d834a3c7651bfbce0890bd8c9fb7b70f05 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,619   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6a/52/e2813c31a8d080649737308823e85d17324defb683a61e853beea00ed63e/gemmi-0.4.3-cp36-cp36m-win_amd64.whl#sha256=f4ff57170a1acd028b3bfd68d7228bf930855d2d3b2631a9eea4e01602ef3fb2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,619   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b1/91/659f69913777cc1fa590f25f5831d9803c9681923690e426af680d9380cd/gemmi-0.4.3-cp37-cp37m-manylinux2010_x86_64.whl#sha256=0e52c81f36d45b51055c0ab62317f72e136a86b9c4ca3ea8045eecaace7b09e5 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,619   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5a/c9/e78fbd8a8d48f13c9da4e6afc4941bbf40142e6423d487335f8fcf46e2db/gemmi-0.4.3-cp37-cp37m-win32.whl#sha256=5940874fbbc5dbf350789d03e91ba10ed902ad9d3321030a524337e437c8409c (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,619   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9e/6e/0ab2f8a07c42a54d6e6fda65549ff13a081c94601f084f795a380a8f14d2/gemmi-0.4.3-cp37-cp37m-win_amd64.whl#sha256=40b926cfc1e03963c4d19455dccce11daf9350b1ac54210608b24936e25bb833 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,620   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dd/43/aa263331953f26ee8cf573129576a87252c4667686b04280e2e2d46a1ef7/gemmi-0.4.3-cp38-cp38-manylinux2010_x86_64.whl#sha256=533c17851d4f2d9d5207cfe8b97de9e7fd42bbf95995e9ee5044c6ce59daae6d (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,620   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/37/dd827724ae053469469c4dc3f050b5b16093195fa50030a202a593fb380a/gemmi-0.4.3-cp38-cp38-win32.whl#sha256=9b13da898e62666249251a358f10087ffdac2bcf8734bb1780b54fda263babc8 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,620   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cd/15/4460162edf9aea5c568b6fbdf2b55536800b32e639064db8fb112c779edf/gemmi-0.4.3-cp38-cp38-win_amd64.whl#sha256=e70501c35e56ec6dafd8a2d64d74a3e5cf32fc87c5934d5ca68ad077bb0fe042 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,620   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4d/35/e8b97d567e27090876330931af7a5f097aed5387067718a25a9d4225ff82/gemmi-0.4.3-cp39-cp39-manylinux2010_x86_64.whl#sha256=f2b50d47148bb02c0cade07d936c27efd56aa192b871cbd05c50e815f0f5189c (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,620   Found link https://files.pythonhosted.org/packages/b7/6b/b4c5c2c12da58813f2478fdffac17d86aaf46c570b6f8b42eef9778d8180/gemmi-0.4.3.tar.gz#sha256=dd1f9d3b5ae06593f15e3093db5a41e6d4609307888ed3b25388087eae7ad9d3 (from https://pypi.org/simple/gemmi/), version: 0.4.3
2021-09-24T22:58:02,621   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7a/88/e074befd61f9abbc617edd24283bf642869882c023b2da5cf78bbbe8b967/gemmi-0.4.4-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=06ac6acad283b6d6181c337cc9cbd24ab4ad745b51da2e55ed1ef6973d0b5af9 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,621   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/74/f0/47da82d4ba10f1d15a212d74c9d712158b994bde8115f9d6d01f5c4ebe6f/gemmi-0.4.4-cp27-cp27m-manylinux2010_i686.whl#sha256=8a18033708701fa6c866fef000142a2e2ae14246a8995308d0369e3c13fe65fa (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,621   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1f/b6/28f2a87d7e189fe9604897e13fd05a881a7933d7d293fc04efdbc6ad436b/gemmi-0.4.4-cp27-cp27m-manylinux2010_x86_64.whl#sha256=c68986b7542e8bd4047437fcf378e991ad90edeb6f89079d740225c994bc51dd (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,621   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/89/06/0c6eda981f85fb5f1633d19c8ce0cbd2d8fcf5677b5d563740241737ac90/gemmi-0.4.4-cp27-cp27mu-manylinux2010_i686.whl#sha256=98dff07c2c7815462abadbfc17fbe76d772e9e245fcef055d6288d03ffdb3c9f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,621   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/66/c696b84cab12dcc9c41f4d59eb767ed681359a0eafd331d9dfe5bab42b8c/gemmi-0.4.4-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=8d8c82d510af39a126b398da03fe4ca475329a253bbf03dfe09b59d78c5e34e9 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,622   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1b/ed/d6745f20401fa9383ec0f166120c8f1d569795d5dc75601386e9811e587e/gemmi-0.4.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d43f4e79bf7b9a069ac8874c243b64840c3311e19c0fa273ad24d136c84e045b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,622   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dc/18/0b5127d8f84979f371d588a323047483a22604eadb457ce9cee709895f29/gemmi-0.4.4-cp36-cp36m-manylinux2010_i686.whl#sha256=949eaec9199f5c503c997f91bcf1dd466e2ef6f1231367bf9c2a124d994e6226 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,622   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6b/62/eea9c84d0e37df89b34c03b562522556419c080462c92eede3ccb9697625/gemmi-0.4.4-cp36-cp36m-manylinux2010_x86_64.whl#sha256=c53cba8d1391021ba4798991109659c10bedaf8ee81164fd8b13fb55a4d86a9f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,622   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/62/78cbc5c9e8f68a84547621a5d42ae22560c0215f918a6c8e007835a59e8a/gemmi-0.4.4-cp36-cp36m-win32.whl#sha256=c3deb52d2b7f72db23ae5c5cb9d01d0fde1d26b736629b68846ad5421db1a20e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,622   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a8/86/7258f7f4797308e3750c30ec16d9850dac8d0e865fc1d2fcd18e345ff82d/gemmi-0.4.4-cp36-cp36m-win_amd64.whl#sha256=c692693b0466895dc0cc172aad70e6d657435a161f9c7fc8b49dabac8a5ebb06 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,623   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/44/c8cd594bc8075226ec1d38c330eb412650e75d9899db7c160b96b788fe5f/gemmi-0.4.4-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=a4dafdb7d1068d7ae205d89409e128a0778c197a23f22472440371d8290c3592 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,623   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/68/832c4428629c200710b73ab360bbf3cbbe7bdff439618e06c136efb083a4/gemmi-0.4.4-cp37-cp37m-manylinux2010_i686.whl#sha256=0e10dfcbb8f357af4865cd9a4b7f8429ac955fc1ec13ab309fddcbafcca07b5f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,623   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/02/b1edf3ca6e2bbc04d5bf9223ca53571a6dec25156b708bc4303352f4f8b1/gemmi-0.4.4-cp37-cp37m-manylinux2010_x86_64.whl#sha256=ccb6e07f90b7e7fdf60ad6785b1c1d00f40d08e8f017a892273f550498b8f4c2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,623   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/13/2f/37bbe81cdad4ad391102f85f660dddc3b9c69a9babb79edf7a546bb00a34/gemmi-0.4.4-cp37-cp37m-win32.whl#sha256=805ceab04ae4a94fcdc6e6570eb43f62e31d8625e22178e6410ca91cd8b9154d (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,623   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e0/3b/624099e50f36dccf6adf402c5c30f8aa788a29e7a7daa0814ffc2b029438/gemmi-0.4.4-cp37-cp37m-win_amd64.whl#sha256=d248cc41378cc2222823fb361c66cb1b54f8bbffc3a86ce5e25a81a6d2747388 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,624   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/e6/54a757bb93d5e818d3c2a9a2c78c4ce2d929831e82248e2bbdfc8b83a5a4/gemmi-0.4.4-cp38-cp38-macosx_10_9_x86_64.whl#sha256=db1c7347a999d654491436314f6baade4df7e19de1a4593b10b96ec9739868ee (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,624   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/61/12/f0e468abe27ca297d48739409f91ae7c8316179eb46e7d6566ef6f8531f0/gemmi-0.4.4-cp38-cp38-manylinux2010_i686.whl#sha256=b8a49aed16792fc6449076847b207af60527bd8c5ed35941f806310b41ff09c3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,624   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e3/25/f86bf28f87680c7acfc0366eaeef544af75c17480777e9572f845b73a9ae/gemmi-0.4.4-cp38-cp38-manylinux2010_x86_64.whl#sha256=9f736fead1ba7d617f1a99ed0d034c9352df8df285e67fd29e201abd9b887da3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,624   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/0b/5ed3cfbd0bc92abf4bed4dd765ed5c3aa639ff2500abe9855c6178f4a8f5/gemmi-0.4.4-cp38-cp38-win32.whl#sha256=095e7da75761fe455e338e0e483757c7d75a49f084003987a5024a829b6d0c26 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,624   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/84/54/78bf9f5257e928db4a5c3464ac0258b2e7c8ddfb01103dd2278bfc996a1c/gemmi-0.4.4-cp38-cp38-win_amd64.whl#sha256=c5214191d65e4fe2ebd7581aabfc431b2aca113ead63040cbd9bacc7148d10f2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,625   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fe/73/b1274d1b4e946992e17c6260498e2538744eb33003b17d9d9a8ee0560b32/gemmi-0.4.4-cp39-cp39-macosx_10_9_x86_64.whl#sha256=e1d9dd1d87ae09a0cfd09f2e965c2422029651bf12d84994b5ae1559074888bf (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,625   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/39/44/e9f31da6e5d63564620ccdfa8fbd811a7056d0ea114874273a8357b14284/gemmi-0.4.4-cp39-cp39-manylinux2010_i686.whl#sha256=bf6b2762d330fb1cba8233279da8ec21402e87718e98f08f2ebb7a7a99afa36b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,625   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/3e/d823ff5a6fa3dcf98a6460ee281c82f73c384f27467d869018b674aa7636/gemmi-0.4.4-cp39-cp39-manylinux2010_x86_64.whl#sha256=c0021ee001a2efddb943b3e420421204b546b18d4c2cc828b74f278b9e7860ff (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,625   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/14/73eda6090c1a6062c6428762e3b722856dada25bfff509532ccd1b039c87/gemmi-0.4.4-cp39-cp39-win32.whl#sha256=fac3841b4db5f7b2f9aed5fd4cdf2021e01173a5e27611c1411752142c9a4c46 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,625   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/84/f7/2b4825646ab5c6afaa50858c97267cbc2b234b6e99a43d956924c6518f0e/gemmi-0.4.4-cp39-cp39-win_amd64.whl#sha256=2a87669bfc6e6c7d6286bb5c98a088d1ba16a7750499f4b8a40d61325e1ae7db (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,626   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b5/34/8bdb8d15ead8117585bec881c80a62983fbd74ebc1b08bf164f15d5f97c7/gemmi-0.4.4-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=f1fbbf7470e4ec8e8c057bcc2f16be115c9a5bd7b4480bbb5f03381076bca1b4 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,626   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/14/dd376612fc3899f68d83d60d1988f89402dd0c8f4a7010006b2f567f0d71/gemmi-0.4.4-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=be99ac15d21bfca31716f3865d8143c0d45809cf8523b40f1b4a72007a0d767f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,626   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/95/39/e1cdaf64ff7d3c7c7b7e186e3f9f32b9957dd9644263e0879555cc2aebe4/gemmi-0.4.4-pp36-pypy36_pp73-win32.whl#sha256=925bff4e17577aff037e442a29ccc6d20a8c434cccac3f8bf211206ab6166f30 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,626   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e8/37/89532fece5b13a637174902bf5719cc6546c77b19b6a26e0292fc7cf8898/gemmi-0.4.4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=6d0ff856a6bfa077b0af51f677950b4fba8c3eab5edc6fd71637ed702e11819d (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,626   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/68/be/1dbdfd3831075a2920c4c3cecb9178dba6f270d77995c773d65a8e16a701/gemmi-0.4.4-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=6435d1be8aac19664dea1383f8e7f5627eefc1a23b68bf3d6379ca540297fe36 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,627   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f8/7d/3c1fab59be120cdfb4d5f2500b58864c55467381533564babcd43f8fd012/gemmi-0.4.4-pp37-pypy37_pp73-win32.whl#sha256=fc6da7524c20947ac7c98923b039e6049d13ef3571140c829e90098bafd4279c (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,627   Found link https://files.pythonhosted.org/packages/50/93/11e3197ee0d201256c63faca3023f68eb50823f4f0d3dd15c537fce89cc9/gemmi-0.4.4.tar.gz#sha256=308032ecee13391e4638a59519cc766c18b60ee3cd606be6a32e386d6f42ad99 (from https://pypi.org/simple/gemmi/), version: 0.4.4
2021-09-24T22:58:02,627   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a3/89/62715a67fdbec732441eefb9ab39bd62f7f43334ac4015b791b977be68c5/gemmi-0.4.5-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=e1c4a7ebc11bda58fe37e3122014e6b759aa304e060a418b9d94e7fd7ad63a4b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,627   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b5/39/c38fa021a44e9343cc886722365d453cf364e2a5a67c285bb328b20ff540/gemmi-0.4.5-cp27-cp27m-manylinux2010_i686.whl#sha256=fdb7369a6239325cd006b385e39f0b03fd0ae859e3836364448279b45f309f64 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,628   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f7/18/b755993b408896b60e4852f9107331006a1b99c83926a948c9b4b27aab32/gemmi-0.4.5-cp27-cp27m-manylinux2010_x86_64.whl#sha256=920123a13367dc00b75835be38a88cb4ff58b73075f0455267b9d89e294e205f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,628   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/57/51/0c582b5adc6cb799a6b87766c498fe7144f792cba2c70b6e4ff31542e874/gemmi-0.4.5-cp27-cp27mu-manylinux2010_i686.whl#sha256=0c7121d24a39f704f2a714b5242bba2f492101ddd8aab8bb2ba6a2b7bb70a261 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,628   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/a8/12c264b0b6d417ac551fdceb2fd5ac3e0bb2e2a83f4931c8f86135b2df4d/gemmi-0.4.5-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=5b5b40c5289affee9549ce07edcdd7e2757f0852462b2c25847c5a2769f22d02 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,628   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7a/b2/660f35b80809bd4f75f2b8f5dd356f1b3b3ee6b999e6811743c68c0dc308/gemmi-0.4.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=b091810784901da3db22eb8706f4b1a6dcc6b562a1178db3fd5a62ee80055832 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,628   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/55/44/f25c57803987a15bea2c24d638da47e8e778fd53acb194e1757523778938/gemmi-0.4.5-cp36-cp36m-manylinux2010_i686.whl#sha256=6dbb7b44a65b6803eb0b47c0bd842c9437d7c1f35f2313f8d3714d4b59fd6cce (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,629   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/09/9d/58f15c2552bfc071f973eec23499c9d6a1b8dc0ce60c7997e49a7402ec91/gemmi-0.4.5-cp36-cp36m-manylinux2010_x86_64.whl#sha256=a2c2f6058ae7c4886953bf86523dc47481db3ed7e1f3e9173716a3ee839eafcf (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,629   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0d/f0/bfa6c95e9071a4061d60c1240f6d5c1dccec497bfbc4a78e9dd0d5d261fa/gemmi-0.4.5-cp36-cp36m-win32.whl#sha256=04d83f14868b96d94c28552e29a63cff5ebd2dcc3cfaf187d23f4a92dd3ff5ea (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,629   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fc/11/448e121ac8ac7217b6f7cc570a6d26bc51d27858c78bc533b6c2a7640b8e/gemmi-0.4.5-cp36-cp36m-win_amd64.whl#sha256=6e8a0fc30a5ff29275df00f05a0e2c2a835ec11281f4f596cdbf6496957dcaa7 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,629   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c0/72/77ea0f799d73d54999181ddd615206492343ada2617996f7169acab168ec/gemmi-0.4.5-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=6e31f1d82cfa6efef5f41acf9e42aa79033ceac7ce43b3506b4fdec4768058d7 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,629   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c0/0b/52ea2dd8bb3d311e441674a79cee4dd490140865595473cb222096c8cdc4/gemmi-0.4.5-cp37-cp37m-manylinux2010_i686.whl#sha256=4585db43804da417733695d772fda639c291b7c0884782ecec4d1fe9b18ca7a3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,630   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/04/0d/a91f70f43b8a0732f82739b3abac31fc6d363c229395308205b87d383045/gemmi-0.4.5-cp37-cp37m-manylinux2010_x86_64.whl#sha256=2092e41ec84a4a46aa524d6d7757c8a4a605079046fce66fb54dfb8c0e5bf7d4 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,630   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/72/1e/57b1c8dd3d6b918198328579e69ce68f7b0df2d7021fe9b7dac55d7e9cb6/gemmi-0.4.5-cp37-cp37m-win32.whl#sha256=31c587ea6e759cbab910b61fca9915cc5f43b57ffc7b8f476aacff50a4e85fe4 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,630   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/54/26/3683d8c49bae1ee13b96911f28006a90163eb65778695c2e67939c4bc37c/gemmi-0.4.5-cp37-cp37m-win_amd64.whl#sha256=a699bd63fc23a69491e07380a4dc7ffe4413c8c2d713f47e47fda375611491f1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,630   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/69/e1/b12f90c4962282c329afdc1a4c9cb7475dda068ec1e0a815209010621c83/gemmi-0.4.5-cp38-cp38-macosx_10_9_x86_64.whl#sha256=4d631c4d619a2d541fa782dc4cd80d890f9ab035f752ef3df6382c9410c8f445 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,630   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/49/90/276372a683c5687081103062ebc8e535181d9eff9ecf4eee42c9081be19f/gemmi-0.4.5-cp38-cp38-manylinux2010_i686.whl#sha256=856373e20c79a00d584663b382f94c04f4420680ebb110bc4a53c2c0eeb9e0c6 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,631   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/65/e5/da6409d8b6d9850036c3ef87e460336c6231b1e0c3bb95f34dd0aaf3836b/gemmi-0.4.5-cp38-cp38-manylinux2010_x86_64.whl#sha256=623b9c2ae4d79d5e7a884e77fc280a27548ca9e38f48b7bae2b0f34173bb1f68 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,631   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/8e/1764f1045f32c0bfb1d2901ac8b75fbe97e1e392b355ee9af815cf38ef57/gemmi-0.4.5-cp38-cp38-win32.whl#sha256=157f6912317fdf5d67f357295791f6bf09c65807a32869bfe0e727284bc292fc (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,631   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e1/2f/73a7b609eac9a9c71e7bff951c2e100e407da14c5a214dc18eda13eb4141/gemmi-0.4.5-cp38-cp38-win_amd64.whl#sha256=95d0f2513b337665e83c5c597b6e173f4652aa3a9020dd6d8dec354ef3384028 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,631   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/12/d4/4208b738e30605318d8f26090bc4380846040f98ded22271e7e4ca46d2c5/gemmi-0.4.5-cp39-cp39-macosx_10_9_x86_64.whl#sha256=22798169f42d28791944b02590495ecbe351f42355aa772f7c3f66bf2b3945bd (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,631   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/af/ce/ab46b8088defeb988d95646598ba860a8a627231198d45ce61a3605ba00b/gemmi-0.4.5-cp39-cp39-manylinux2010_i686.whl#sha256=1922f1bf704a4ec26370cac149de8134a2daff3556196f2e833c1aeeac0e792d (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,632   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/43/2c/663a099339e2bc8294891757038496434774ac16c65a2798cc431e206a55/gemmi-0.4.5-cp39-cp39-manylinux2010_x86_64.whl#sha256=801817242e73e7941c9e3f1279f55d3b6e29bfe66aa3585347287198133c1460 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,632   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/78/f1/13a68d2f9a11b3664e0e1de4d79326cd67862bca4f5c49ee4bef2514b9db/gemmi-0.4.5-cp39-cp39-win32.whl#sha256=9905d8f5f4e8f51c58c4a66d6b925e2896e9884e7cb2ef88d5b2188d3c9d163e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,632   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e5/82/f72b3028dd1a01369dab40d8943011dd96bd56d7d019b848b9545345a50b/gemmi-0.4.5-cp39-cp39-win_amd64.whl#sha256=8ea3999c416085cbbb373a30bde468e215c3db0c2506a0df71700a7a3333c50d (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,632   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ee/6c/c0b2f77136489e9aada94adf29c586fa51e982d63cb162b71f598aa52e4a/gemmi-0.4.5-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=38d0270275c0f846ebd8af070a829fde935553fc0b9234a34a424afcf514aa61 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,632   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2b/62/0b7d622c7961f0df3818fd1e56d398c7c723ddacb9eaf864d1c729fc8e22/gemmi-0.4.5-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=551e99ff2f9ee59edd78e7b28cbf13e123aeae2b698d7eac3464db0e7a2298b1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,633   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5c/b1/c48b5b6c866bc104ad5ad0667d4133d9185a982928235270332fb8a21436/gemmi-0.4.5-pp36-pypy36_pp73-win32.whl#sha256=904dc646c8452ed4db7af53ec85aa3920bf3198bc58ee7ddead55d5368c79c23 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,633   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ac/13/721e4b76e5db2f9549ba22f0c42181d25c936a9a7d17ad2640aaf91ee38e/gemmi-0.4.5-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=9faaa0bdf8c884bb4ae6d765995dd61ddd1592644aa86fdaab8d3870622db4b5 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,633   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/e5/ac1318a6fdd197e1a1b039658efb59afbd1abbb44ea9789fd0c6b9b49724/gemmi-0.4.5-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=e1a09762126bad2f4aa0e9b3f68459ab1205f244bd4d306dc9b4ea8f9290e03e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,633   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/bf/c3c250e76b72ececf8b9b4c46c5d53bf2f321a97137bda5c791061b2eb4d/gemmi-0.4.5-pp37-pypy37_pp73-win32.whl#sha256=9fd2954c6eb5b6612096bc315508a8bc79e03c84b924d4c68f8a3e82f635dbc3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,633   Found link https://files.pythonhosted.org/packages/cb/de/3009e2c600cdface74bc3cd3a61abe573a1795494884caabce654f7d9b67/gemmi-0.4.5.tar.gz#sha256=3add3d4a24237b0d80499aea92d21d361aa1603a8fed01f076815321a2a1cf58 (from https://pypi.org/simple/gemmi/), version: 0.4.5
2021-09-24T22:58:02,634   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/fc/4278f6a11da18b4797458633032cb0a7e8babfd94e69285761ede60f972c/gemmi-0.4.6-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=083116a92e0fbfa4373de32be3e43e01ca1d1e6be86b7c6ef173c3ea553861b5 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,634   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3f/2b/9f4b2fa9e86ad506c5d66d1e6eb2b2e71fa2895f2675250f0a8f314ad322/gemmi-0.4.6-cp27-cp27m-manylinux2010_i686.whl#sha256=1473bcd63ddc6df187c0f86d8a6e868525b4280b1c66f6f50c1ab25d5e722393 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,634   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b6/7f/10630937c391f27987c18f19aa42c4594ddb39e0b0f5302f0dfec4aa4428/gemmi-0.4.6-cp27-cp27m-manylinux2010_x86_64.whl#sha256=a9447f119c5e0d27ab9caf0926837c973b062d5949ff885bce1adf813bb77514 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,634   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d6/fb/798923bf3741e91253a24491049b57590469a7f50cb3cc9253fcf60945d0/gemmi-0.4.6-cp27-cp27mu-manylinux2010_i686.whl#sha256=82b61383fc8481a5fde3260b026f238c625515a1ed9f302dc5a662bedd4a1551 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,634   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3d/74/b4ea05a4bf76367e0ad27b4c5bc02c2ed31c32bdd2386378d72c90175c59/gemmi-0.4.6-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=e0ef1e691b9069a30e1fe0570d4ea511e6699c759bc42281f332ac4d6629902c (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,635   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ac/10/23fa05a07b6df83608aa59cc238f74e84d8058ad2ae310bdbb47d1c81f85/gemmi-0.4.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=59e6a23c19f68f57a352bde9da0725932d37c6b6aacdb7039a173433b5f57b01 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,635   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9c/55/e8ba86967640ea9c436a8dda39164837d45e7ee5f7fe6688ec9e52ceec81/gemmi-0.4.6-cp36-cp36m-manylinux2010_i686.whl#sha256=a55404ede320c7f1ae9167a07c8f7ff8d3d94bf447a3128620f82bf26a453dd1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,635   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/74/03/7cd6b99f2d8ce8ac485e7550e476ff0d752b5743486de3a953ba162f8ae7/gemmi-0.4.6-cp36-cp36m-manylinux2010_x86_64.whl#sha256=1865ae6bbab2e2ba60dd2583e97279ab8a792218ce6c66f1d793c44580900cb5 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,635   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ed/2d/e80e5393bfaea7be595bcf6ace407e0042b28496e510b38395476c9a7836/gemmi-0.4.6-cp36-cp36m-win32.whl#sha256=bb7e17fafed5a23aeedb8d85d838bcb175353d3c5d105ec808f16599c52e6324 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,635   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fc/1c/1ebdff39cfc9cecab2445b22e1b480d458c253dac3e9017c3d76451e908f/gemmi-0.4.6-cp36-cp36m-win_amd64.whl#sha256=0fad8b9e630bf333eaa150c38ef5321f1d25f5892e2d72a6250095b41d9831c0 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,636   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/94/f0/1a405fed888d6d3aba90bfcdf11b6e12655202b728ff2a035e3f5ff11297/gemmi-0.4.6-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=a3aabd2b9ef0b9b78b257dcf42d19e5eadd139dab04738ad5809b2ff2148dce1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,636   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/51/51/71162451f2e331bd46c154b2673f38823559e90989d5e5c1196f8fd9565b/gemmi-0.4.6-cp37-cp37m-manylinux2010_i686.whl#sha256=f460efe7d9196a4c739b884589f5db3598735881070d0099a3e3980fd14da1e9 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,636   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4b/29/d5b7a27bad71957f41c644c3c19637f0d9fefabbbc4c501cf6be1eb0537c/gemmi-0.4.6-cp37-cp37m-manylinux2010_x86_64.whl#sha256=c1c06a78d7dbd6806644063ce29e8c2a5fcdfa5af8e60986a0db5e2d03ef57db (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,636   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/e8/506e69e5caaf93daf0e9429f2379a16ff07d39b76916944f492d7fe369a0/gemmi-0.4.6-cp37-cp37m-win32.whl#sha256=2bf2d9f46c4bc5cb5804ca92818b4a025f68c6d1c101e839fe3810f58c2a6ba2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,636   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/21/cd910ccb94c96cc6608e109eead1645be18715b4699382aae51604464b71/gemmi-0.4.6-cp37-cp37m-win_amd64.whl#sha256=bfcffee0607e0644fe5403b3e327ae0716479466eb04c88987c50d9ff368a8af (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,637   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/78/df/e72a1f1be72b6a3ff8f4def21ec8b31ac56c77bad1b871386fc8028115dd/gemmi-0.4.6-cp38-cp38-macosx_10_9_x86_64.whl#sha256=6dbf6ef26cf0c8d789099c8cfbad5b87d3f740b0adce638c7b5659373db1675a (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,637   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/56/cd/c2fe5e0c0673c734db137d12d45ade2a16de88a68772926ddff4ce230ac6/gemmi-0.4.6-cp38-cp38-manylinux2010_i686.whl#sha256=62a9cb3f4b44beabc38455e70531b202c0fbffe5591678d72a7e1c9b32ea3755 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,637   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/08/607d0949bb3e508feb63d71dcb16c8cc54b146d5d020e228b90db69f44c0/gemmi-0.4.6-cp38-cp38-manylinux2010_x86_64.whl#sha256=4827bae4bd2facbc7025a1eff48bbea5b43b68d2868a219ab94acd62f7083233 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,637   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0e/cd/df5f9d994a9b20ea68cc6efb0892011d870db72ec985c77df6298f3ca836/gemmi-0.4.6-cp38-cp38-win32.whl#sha256=f357a0b5e91a1b3ac519ee3ddd9f5e6a7bd5941d00cba4678102567c4558ba31 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,637   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1a/4a/6a4e5db1bdc3be1a1cb6c0c21193d981ea5fa2991058b4ceb7454a9cb520/gemmi-0.4.6-cp38-cp38-win_amd64.whl#sha256=49c6c5c4d851b2751ff69c57a87ef6928beb9c20dd69b109e6416cc91a0401cb (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,638   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/75/1b/306f7baf0785078f809c12c85652537545fc0f3320c914371ffc712f19e3/gemmi-0.4.6-cp39-cp39-macosx_10_9_x86_64.whl#sha256=60c85798ae45505c196dc905b1c742c03ace32369de821aa9066081a7c8234a2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,638   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/d8/c37aa4a871b46ee81ffc34ffa612f917fe5ec1db64245cb4d050e5d0b827/gemmi-0.4.6-cp39-cp39-manylinux2010_i686.whl#sha256=4a3002520dec779632c877de825ff566ff704973d6cf645dd7d7acf1b8db9116 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,638   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ec/94/8d880d7694f846d9a480b504e4cc4f121055b001e6d2d9070102782bde74/gemmi-0.4.6-cp39-cp39-manylinux2010_x86_64.whl#sha256=39069e5abd4b44345c17008c6241f844c7c1fcf5240193f13dbd98d42e5c0b86 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,638   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/07/ef/2b5075478d09a0c9a688507124642f7e8a99d51d46c6a8dfffc9a9d9ff8a/gemmi-0.4.6-cp39-cp39-win32.whl#sha256=dde1b7a027fc4aeba200a746322a3d9cca4e26f0770498e521c085099c198b4f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,638   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/92/fcae326c99c89b286efcba8cd0c95e125f6ba909c2550ab23ad1e8377cc0/gemmi-0.4.6-cp39-cp39-win_amd64.whl#sha256=c29e9dbb8fb7780a70fd54cc95858d3074f01edbaa3efffe6495d8cd094d4362 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,639   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/24/8b/e39db36831a95644e89dea92bdd451ec6568b4e506ff9c2194cafd38d56f/gemmi-0.4.6-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=e1eb99f57b6085a617d5cc839c88059853f6f77dce7aaab6cf5fe021be2b03d1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,639   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/0a/d8cb7a05a6e3f199e0363e61e8cfc369820ea6adc84affc94a9363dec59f/gemmi-0.4.6-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=fa3b71f7fc98ff8b00d089be5955d0f155a48dc6af6f1616af9b5554fb27e86f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,639   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/53/fa/89eabf0dbbaf91fbfc99bffcb3d603474bc6cd1ef9615e3f3213cd0cfe9d/gemmi-0.4.6-pp36-pypy36_pp73-win32.whl#sha256=3908ec8add86f3cca774bb1e98dcb77fa3c87b5ffc6bc87601dddff296a9abfc (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,639   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/85/de/a01cc76fdb904af071b74b404daedeedb9fd215609f18e2104e9ec42cabb/gemmi-0.4.6-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=29d4cce47e85736c100d7354c142f0b0d1ba0f7e95e5cf1daefee4fc21913eec (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,639   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/c0/22d5631bb9cf8af0c9a613987e4adaf670730c2af9878dcd49a8503aece8/gemmi-0.4.6-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=628366463a723a97af0506cfaeba4eaf4208609f9ad7410215844e8051471fff (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,640   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/79/86/a7bd5d5c766a719319244373bf8e455bf85993e67230341de9be0b3631d8/gemmi-0.4.6-pp37-pypy37_pp73-win32.whl#sha256=432f3d7ec36725eaeca3a7fe455e99f741f5582cb3bef29f3c7df539618b3192 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,640   Found link https://files.pythonhosted.org/packages/ce/18/3fd50934956b378006bbd12cde768c35dd55c7f5359e82c8680100da07a4/gemmi-0.4.6.tar.gz#sha256=8c804510ddb455282e540189a6acc39c99cc759d27f41a55983c0ea99b8a6c77 (from https://pypi.org/simple/gemmi/), version: 0.4.6
2021-09-24T22:58:02,640   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9b/86/cdff573b699036edc8ca9f7d83f3f40736ef17ea79726e1b2de7debcd72e/gemmi-0.4.7-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=16038c4f997850ec80ec26e1da46d79ca7ca691958a7b9d8b4af48de5d976f5c (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,640   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1c/6b/786e51debc4e0e199c67fb5a00972f02c6b0e01fdbf6ad19b726fba6a669/gemmi-0.4.7-cp27-cp27m-manylinux2010_i686.whl#sha256=bda0dc61a1352e1eb23e6109664518b4e121fb50d29cf49f96b82f9dcc446516 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,640   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0d/51/99d207e130a212b2bccdc179a4e78a8ceaade11f5ee15c2f4ae3f6d4ecf2/gemmi-0.4.7-cp27-cp27m-manylinux2010_x86_64.whl#sha256=e77c0c838e7f3e6c44bbc5a85be8f446a199a0a705ed4fc1ea0b5416292725d5 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,641   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a2/cd/2fa705d106c5c08b541db9c65bb12f237930bc504995c04e055e8f8c2a50/gemmi-0.4.7-cp27-cp27mu-manylinux2010_i686.whl#sha256=96c08fa68e0282cb4531057752e2d00d5d124797e7b7ecc995bb0732ea56d437 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,641   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6e/1d/85b0771c0235f82fef9df78050e5b22c8b92f89a587af1b4b6b5738fd94c/gemmi-0.4.7-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=ff0abceaddb65944c6331d74788287513a90791b0cb054f6ac49b2a9bfaa7ce3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,641   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/05/20ac362a07e783d571cc65efaf1b3ee539ec28e73985da6a059252b620e3/gemmi-0.4.7-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=c06e129a26b6360f9701a25d36a9f13396bc1bb85364f0e48e2fbdb7e043ae25 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,641   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/04/af/06d6cd6ce75983ccf4076846eaaf4a586964cfe121f3f767f7d7891f6bfe/gemmi-0.4.7-cp36-cp36m-manylinux2010_i686.whl#sha256=0dddbad6f0d23c466ea5ebc2d30756a9ebc85ddea9233b45403639a9b7e366d3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,641   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a5/61/c8e2ec5bd6d1b6288aa541edc603f43f9248a83f9ca470383d739d7d7adf/gemmi-0.4.7-cp36-cp36m-manylinux2010_x86_64.whl#sha256=b9a8217cba556d234d61bf63fd6acd0607c5826360cde7f45556b72f6b0339a8 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,642   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/c5/83d1c9084eab480c13849462e0f211d74d2aaefd0832e33a42099e4dc7a4/gemmi-0.4.7-cp36-cp36m-win32.whl#sha256=a6b29a96e67222d9f4980163c23b4482e239f8470f03508ce16efe9df892a42b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,642   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/b9/f336e9522b8375f5e3ca8f02da39a1b3e5a62aa062ca63136c267a69f2ba/gemmi-0.4.7-cp36-cp36m-win_amd64.whl#sha256=c52da00dff031b357be636a128b84d26bcf071ee4735a58d577f445306963e8e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,642   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b3/54/4c0dd5642138b078b208fcd9600fc32e2d412b8945bc5b82fc74cbef20fe/gemmi-0.4.7-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=b7f0d0a584c8bc893aee3a421692ead518fb647246067032869e154e1f60432e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,642   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/25/91/ba6367b2cdd3e7ae0400acecb3a8b9ec714a03850eec8023aa41f6124ff7/gemmi-0.4.7-cp37-cp37m-manylinux2010_i686.whl#sha256=56b2315724960c586e1c94af31f614fb656e123432e3d157166dfe5bd6ed9ea6 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,642   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/62/5e843d8e0706d9a1afadad6d8154e837f885aeea77ce72b55a7d88fe5cb3/gemmi-0.4.7-cp37-cp37m-manylinux2010_x86_64.whl#sha256=839e221500da009a66190c21a431b29737be8097e669d3984c3b9c2c4546f5bc (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,643   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b0/ed/c10ad32ec19e1a81c3cf7a7d5b8e511253ed8afc6c304e03ac5fb2fe7457/gemmi-0.4.7-cp37-cp37m-win32.whl#sha256=b1e8067b68223d94fe400a22737a235ba56b3f897383c3e24da5f5756c271cc3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,643   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1a/79/1156866fe02ba91633024c90fceb20daae7cacdd1f13a089d52dae1b9d75/gemmi-0.4.7-cp37-cp37m-win_amd64.whl#sha256=3df4ec6a53767fe9fac92dc80cbdb19eae8eb5beb2c2a280628760783d0c3e06 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,643   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/10/86/8d3c3302d1bfc07187fb2c049ff130c9e512c3039a806ed2dbd5e2975efa/gemmi-0.4.7-cp38-cp38-macosx_10_9_x86_64.whl#sha256=862fd1975e2a1a0013bb5801c8f563645e4ce7b27785e2c5e893080705251965 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,643   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4a/1f/df29f693708477accb02e7aa314f31838b2706ce7c8ddb42c95273760a88/gemmi-0.4.7-cp38-cp38-manylinux2010_i686.whl#sha256=3f1d3c9814c1ae40595f515214c27a454dfa207c58b6094e16eeb314b4fb42b9 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,643   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/50/5d/45b02fecc8de9ea01860f3619954b8f97d702a25d21b59c782b2d0a081c0/gemmi-0.4.7-cp38-cp38-manylinux2010_x86_64.whl#sha256=d8dc0b2580d9a8afe10ac895e8494aedf42231ea4b8d7f1b2e7a194c0cfb01e1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,644   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/65/5a/d7ef0e8daa496d1e7297fade11e9ef751b525e5e6a26aeaa53fc23acf98f/gemmi-0.4.7-cp38-cp38-win32.whl#sha256=7b23b20c1ff83b88f8d4f61ff3477716a8b5ff495c8e4166e03fb0e9ac769109 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,644   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/84/862810ac717e018ac4cb77860a565b40a6a072afae12e54c0c1fee2d846c/gemmi-0.4.7-cp38-cp38-win_amd64.whl#sha256=dfd4df4a87c20510c955688ba410130d631c8fe7301fa93c59ba5252027897c0 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,644   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d0/27/60f1014c10675300a44b83b9d9b6da47cbed148c9420cd407b89aca042db/gemmi-0.4.7-cp39-cp39-macosx_10_9_x86_64.whl#sha256=fe79f317d9b6e425326d64c310a22942ad7946ff6f422b62b363d12b188fb48e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,644   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/67/e3/3544831741bf92df12d53c16c10257fea7d8a5752c9212e1d6acf1359e0d/gemmi-0.4.7-cp39-cp39-manylinux2010_i686.whl#sha256=aea435633c2af30b3075594deacd256df55fec879d3cae484ea1dd715424509d (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,644   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d9/22/01d397b6c9298ceeabf12c25291afba0a04841a8ee847048136afed56f49/gemmi-0.4.7-cp39-cp39-manylinux2010_x86_64.whl#sha256=75df0a37120f34c4e8c7a9787e5aec4dd951491d870ed1167e45039a28b7e030 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,645   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/94/f2/59a58c53ea47f850008b60b059eb3a181cc05fd3d6a0abafbdbe8ad0b093/gemmi-0.4.7-cp39-cp39-win32.whl#sha256=867a7d5849c87f8e7e20e7806bc50abc372895548ecdbd29d15c0715d9459eab (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,645   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/32/48/f29a0b98b00d7f3a3cf6b7b194f77eab3cbb83a630be8cbc4fdb2d23ff04/gemmi-0.4.7-cp39-cp39-win_amd64.whl#sha256=bf08a3c86fd9a1753416ce59198bb92dfbc74448fd4068e58ac460fd49f2a7bf (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,645   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9b/9c/f6426743545f32e53190ca22d524819dff6b24ca98fc5c164da1db23f6db/gemmi-0.4.7-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=e9c86f832f8f7def7941551e93b4a8b7fbd22ac6bdd5d42cd713941dc4270c4a (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,645   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ab/07/ea64580e7ed5ce8f2d1db56bf901e9d169d58d4dc52061d5453f6947b8ef/gemmi-0.4.7-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=b57ac1e854b3ff654c13463b6dc9204b489f274b7bc1b6cca80ccd3d7b90925e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,645   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e4/7d/fc555f63e4842fe2411b7b5add1abb0dd0991f9c8b12a7adf98135531aa3/gemmi-0.4.7-pp36-pypy36_pp73-win32.whl#sha256=c5ae05194dfb35c8665a271aa954be0046b65697e399b1ab35ba0c8239b48269 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,646   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/b3/351231310fb90d16a1a443001a66be62ac3cc357f61c3c33e55ab55552e3/gemmi-0.4.7-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=2c6ec713141da611bf36a84248660d9c1ab49b451359649926f59aee459c9a25 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,646   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/59/87/54699b9751a3d1df8f0495ebf3d94de0c2c43a4890a4f00872e1217eb466/gemmi-0.4.7-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=567d1b48e10bfe4f056f9c74aa07fd355954bfa7308eac7dc10c9e3e8101a910 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,646   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/df/ea/e01a008a71fdb8fe566ec35e322fc2b85067f5158156b54e676f33386b69/gemmi-0.4.7-pp37-pypy37_pp73-win32.whl#sha256=d33a9bf473c446c71b9781fed07efc50fc80305dca26c933971c1ad0d7227768 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,646   Found link https://files.pythonhosted.org/packages/1a/6a/57ab433972758026e23b70317c45e6dd3d8d5e3b613395222cfc1c66f8e0/gemmi-0.4.7.tar.gz#sha256=22b94c35e5cd807fcdadd3e548f0ddf11dc1b4c5550e3a1359cffdb3e1fc9d14 (from https://pypi.org/simple/gemmi/), version: 0.4.7
2021-09-24T22:58:02,646   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e3/09/d16e2f83de54713c5be0b634de276a7c7f6e2edc4b68acdd8f55973d1fbc/gemmi-0.4.8-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=6058c248a438854d148091aa9c9b9535be9d93c03c382177a5569c037c2e145b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,647   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bc/7b/a0f6d52641d618fca00d462d3ea38164a3d2abe6ced000f01b804975b31d/gemmi-0.4.8-cp27-cp27m-manylinux2010_i686.whl#sha256=728e98a3d36d1447d26b480294fbd7cb9214cd6e5fbaf9f691b397bec43ef5c9 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,647   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/09/bf/081a34019f66d66d4821f790ed3ce0f13f19ab1a1bad9c9867011848465f/gemmi-0.4.8-cp27-cp27m-manylinux2010_x86_64.whl#sha256=86e7e394b724108d72e793c45dd27f26d4ef7f0bf349befca84afd7a09a5fdba (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,647   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e4/f5/3dc5d9b61ebbc6f491aadfdfd0bce5266173a6961cfaa8c222c39fa54474/gemmi-0.4.8-cp27-cp27mu-manylinux2010_i686.whl#sha256=87f4130d3a271f521668b00112f53f935307ef40e3e41fceb5bccee9a74f4fde (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,647   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7b/14/6a75536f7309e2b90fbebd8f71236725f69de274a2ab14be1aa087c7ef42/gemmi-0.4.8-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=0927aa97bf949215abdedc7de3e76fa774cd303f19941432906a5af796e7ff55 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,648   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/49/44/ea1a52fee634b16022f8f9111d2906f5e34debc4c2ee42aa85d0e5699fe3/gemmi-0.4.8-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=0e5c48417cb67b831e256e24fd252387bdbac7550fa4378d8170a5eadc971a12 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,648   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7f/3e/0bf25e2a04b65efa4a2201b28a20d7db1a8bb553651d29b8b4bfdc808bd7/gemmi-0.4.8-cp36-cp36m-manylinux2010_i686.whl#sha256=82e6274126469d45a08df64c05dab175e40c95e0b6c88e5b9bfe3d393de1befa (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,648   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f8/94/4b6a2f54607f925bee432c31bca7148912f73a76065349100b30f4e1b7a6/gemmi-0.4.8-cp36-cp36m-manylinux2010_x86_64.whl#sha256=e02e3b87a1867c267ac8119b0ee8b5cf7a0adbf8d325abe2dac522f9def36cee (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,648   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b9/e6/4dae5ab0096e2e7e2e1d6deda674752991a59bd0b40bac7d15750f201fae/gemmi-0.4.8-cp36-cp36m-win32.whl#sha256=832554e3cca16dd58a98424c887eaadc4ec1e0bffbc89ced207c30b836d70da1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,648   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/5d/b904133fddc14b69650969f26adf4475c61dd6afddde5915e8f9a1a908a4/gemmi-0.4.8-cp36-cp36m-win_amd64.whl#sha256=c228c05e4ff00d30c1f291b12111ff6756bb2c68bc83003e13f4433489518927 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,648   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c6/66/c5d99fd508028ac16185206845a30e077d6a50e696d70f4907763bf8604a/gemmi-0.4.8-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=bbfa71690459c15a93bf3f4272a85b7f97bafef40321a17a9b6badfb7b5c411b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,649   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/15/9d/2625a39a3b865592dd6625e6ffb15a8f8db73b4b6e6fb4579a01180ac7a6/gemmi-0.4.8-cp37-cp37m-manylinux2010_i686.whl#sha256=3cb3f1e0f661fc3ce55f9b142bc46a8f26d546e7e0d68791e49697105bd4eef9 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,649   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/38/67/04678d6d5c1e221db2d2c454ebd191f1e64426925ac78c74b776923cb17b/gemmi-0.4.8-cp37-cp37m-manylinux2010_x86_64.whl#sha256=8b0e5a2b0d59018f1187bd8b1cb4e2e0d935132eb746c68220d57d4f7e868f5a (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,649   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/85/2d/550fc0225d8ee08fd7bdfb0c9afb2d813aed43f7c425bba49f74a91f1432/gemmi-0.4.8-cp37-cp37m-win32.whl#sha256=608bb7f5bf87c0f27901094ec782b2059a9e49e478b3f0406ff4908a99515798 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,649   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/52/a8/1b28d920aadbde1846187d57f9c5ba330407251ebe3d7c309e1fdabcf406/gemmi-0.4.8-cp37-cp37m-win_amd64.whl#sha256=78b00552292b32123c79a9d6838cd406493fa5695b9c447c982ff1cb65a02c96 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,650   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b4/bd/ba247f570a39e762d764c0331543b3043cf64f5f0ca36bced858487987db/gemmi-0.4.8-cp38-cp38-macosx_10_9_x86_64.whl#sha256=ced13f3e9cb3dfafb5d2221bf64025d12254316773060947ab9177e6e3f6cda0 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,650   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/0b/7967a09be146cdebee17333fc3a4dfd9f0e43f6f6ab41c84fa710d8ed96b/gemmi-0.4.8-cp38-cp38-manylinux2010_i686.whl#sha256=1215975f2bab33fc558fc14e52153c14d54ac540cedb9ef1dc34406918f9d0bb (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,650   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cf/bc/5f1924a4857563dcf10cea63b40033966f333866d5243d1c30fec71a18f0/gemmi-0.4.8-cp38-cp38-manylinux2010_x86_64.whl#sha256=4409b9cdc9157774f7dcc2e966c2ece2a4e44acd1991b7c61c47969452080c76 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,650   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/41/e4/a26be690bb45b77fee54288dd81f34e10bf30efe81ae6a516dbd15d6a4de/gemmi-0.4.8-cp38-cp38-win32.whl#sha256=2459c52357e0de52f8862dec059a5bdbf6852f2deefdedd049b502f4c988314b (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,650   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/b2/25bea6fa2c21d0c27a397eb40f4818d34693be00926af93e5bbdc605660d/gemmi-0.4.8-cp38-cp38-win_amd64.whl#sha256=827ebba1d859e90a2a51863d15bb4b07fb75171c6865ae4847c48fae419e785e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,650   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/8b/69/ee81c98ac6998e29cf1931b341320a4d65f694c6a095adbff7821c085a11/gemmi-0.4.8-cp39-cp39-macosx_10_9_x86_64.whl#sha256=fcfe3ecc1c871a342074c64a6f79434992ef445034a518670e3768f38796dffb (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,651   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e1/c5/eccf26a655b44740191e448ab62723e73d9d8101fb7cb61e9ae612f50772/gemmi-0.4.8-cp39-cp39-manylinux2010_i686.whl#sha256=a523f77369bec850d564286e9f25eb5009f03445c0894480cd1c136b28004b34 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,651   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/91/fb/02cddcbd54aaf2bf654984d03228e3ee2fbe3aedd632bc9d8627ef27cbcd/gemmi-0.4.8-cp39-cp39-manylinux2010_x86_64.whl#sha256=3d993939e42442a338071b1da3d475b85f8a08a55e13b793ceee0c8467f2b766 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,651   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7d/68/d6aea40eabf9be195acb7d626ba502c74ee2dee946630e72239a9cad1a81/gemmi-0.4.8-cp39-cp39-win32.whl#sha256=16e6ce323de4f3c22ca2e5f56bd0734797345c55536fdf3e910cc15cfa5910a4 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,651   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ff/15/2b20579d523b79117297458866daa67deed9bb3ad93ef94dce78d57c83ad/gemmi-0.4.8-cp39-cp39-win_amd64.whl#sha256=eed56c263ac8d515117eee14cba84c190495c4ee3057d6c9c87ec0d514cf62f7 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,651   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/97/34/5c0e1a3c55b929a6f001cc57407cefa673bda7202b449aab8b0d94de96a8/gemmi-0.4.8-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=5f785b1e8ddfb63efb3a5e9296fb411b2713aad4685046591b38808b653f7188 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,652   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d6/34/367588c79586d6d659f1783bb7db682f15bfe2c4dfe14a418a763f972719/gemmi-0.4.8-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=f77da3ec100a3652d4826814ada6695353f2210f0c1fec084031e64e61013bf0 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,652   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f4/3a/d3278fc9583de3e8cfb6db2692ee91fe9551046274e4c561ae9ee82af8ca/gemmi-0.4.8-pp36-pypy36_pp73-win32.whl#sha256=5ef0a067ea52ef7f89c7d7ff0814dcbbcb2416c978a45e2d54b238ac4bbbc71e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,652   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/30/53/9123f651bede3b9b5c3c926aef95e4f628f7b460f709230453bc16557df7/gemmi-0.4.8-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=8f5c911c5ca993d439fb60ddaf5bca6b50a447ecda34a2fc5574f0195b4f73cc (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,652   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0a/8d/211a30f8c8f27b313e2d51e0374a642bda020689f5bbcfe3003d13601b76/gemmi-0.4.8-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=fd47dc19874ff4f5a797a8a0cbd71548f00e6bf6f23310bbbd555be44f967f97 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,652   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/11/c7/de6f582a7878895741ede91da2d7e4f104c72404cbc5d7bf56b1ae8be6e8/gemmi-0.4.8-pp37-pypy37_pp73-win32.whl#sha256=dad667a715e1199e728455f49cace41010632af00ef93af2eed854b99e61489a (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,653   Found link https://files.pythonhosted.org/packages/be/6f/e45033469acdf0b06ae8451488de7619952e889cc4a7deed73e3c6df3cec/gemmi-0.4.8.tar.gz#sha256=016450570841015b4be7239f43553e85a5812ab42e4cce30e3b88feec360297b (from https://pypi.org/simple/gemmi/), version: 0.4.8
2021-09-24T22:58:02,653   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/eb/d2/1c0f1fe6ae5eaca6f63b963e407f54424635e5e6d42874daedab3d65b59a/gemmi-0.4.9-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=d5a35e37cf254bfe4921c753dc30f712b9051788ec450dbbbc603a0e095e3bd7 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,653   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/6a/373e356e0f7e3929762e59684cec83a6ff4fa3ce5e15869ab8c1f80a0a58/gemmi-0.4.9-cp27-cp27m-manylinux2010_i686.whl#sha256=ee25a8c95f63c451cada6eb69f3c8f79865a47c2f926728f53b5472d2af16c62 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,653   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0a/76/57de4029f8531bfb9bbf05aa861cb3350d68d7aa1a53ed24bffc475dff36/gemmi-0.4.9-cp27-cp27m-manylinux2010_x86_64.whl#sha256=aaafb4e64c18f850b3bb0ea7e30c9c9634fd17c700a4fdaac29701e6b3c469a1 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,654   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/f9/0e9d896fb871481d49c7f2d68e8b21cc6c5175fa158eda919ba85fc00d7a/gemmi-0.4.9-cp27-cp27mu-manylinux2010_i686.whl#sha256=4847de447156041cb12353c2ee720b323f9aa997a235e339fb796105c99df394 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,654   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/91/c1/e3a3dda52195d2256e18deaeba42d1ff8870cc2c856f912e3d92d5286419/gemmi-0.4.9-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=8514d2d67d49953e646fd1e145ce869402e8125128de95194d6ed6bf4fbb86f2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,654   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/91/86/7497f5f70a47af921e946978c282d41f6d6e48aa7cba7d9e48a91665674f/gemmi-0.4.9-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=11c1a8a1f8948a84773639f8a3956316016ac608cbc3d78acb3aa5be66b60a43 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,654   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d8/4b/12cda0c8a94cf6f5424ecb640e97e53bf3c9ed9bc714ecf6f5da73acf356/gemmi-0.4.9-cp36-cp36m-manylinux2010_i686.whl#sha256=401c14e0d45b78b568212346ca2136e47741de71dec8b035e2b5033abead8ae0 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,654   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/83/04/718cb69a3fac9baf5f2d3d7ecf9f5bfd0ce241b0fa26af9299109ed8c410/gemmi-0.4.9-cp36-cp36m-manylinux2010_x86_64.whl#sha256=697e50daedd05995e352dc3200c13802105648eae296c126bafa1f33d67d4e92 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,655   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d7/4e/c75b74e6e14d378611a40c04bc33f14a64d54cfe238abac87c519f6da989/gemmi-0.4.9-cp36-cp36m-win32.whl#sha256=cf9a024794b0143e3243e2bc71eb7b3a679c63630659191ac23a199a034c0369 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,655   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4e/cc/9dcb68b95ba7e63f98b26caf95511a798cb2b9cf5baabf9588137ecb5d17/gemmi-0.4.9-cp36-cp36m-win_amd64.whl#sha256=1366575429f2368d33398750bd9c5fb5be41d51c592c66665c795eec9c92dddf (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,655   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/69/dc/68794b8fd14366467c60faba4e10624eb1715c43aff5082938dd7b88ea79/gemmi-0.4.9-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=2e0a360c542857888fc366f62046b329261636cde80edbc19b6d5f0ad2d83863 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,655   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f4/70/52c43c2a25e9394b8e21681b1914e2d31c2f5cb5b8c072dff1aaa9448b28/gemmi-0.4.9-cp37-cp37m-manylinux2010_i686.whl#sha256=dd7a9942185154571f91b4f2bc706757601722ef7d60447f3ffaf46e81cd5dc5 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,655   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/dc/59a7a0c5c4f854f6e1adfce5699f1ebcfe6393632c218238a5a31fa0599f/gemmi-0.4.9-cp37-cp37m-manylinux2010_x86_64.whl#sha256=09f292a9409b29db9564fc9a43ea44b474ad5b3713285fbb10aa4620cb98efdd (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,656   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a2/cf/b3ac2fe6712a13eb3faa131256a79ac2d58a46add4912f09a029102fda67/gemmi-0.4.9-cp37-cp37m-win32.whl#sha256=f291c4bb2da17785b8387ff7001e8cf47ee9fcc4cc280cf477423e0dac508aef (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,656   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/79/a9f847512b292ba6a2718a87ac54090d9af14b7bf54ac874ff100122dd8f/gemmi-0.4.9-cp37-cp37m-win_amd64.whl#sha256=b71cf5041619f9b58571c451f4d3b48a0612cd4bd43b5b135f9c2a9ec0638bc8 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,656   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3a/23/46a9343185dd2760a81553627971daea3d2af7e5762585b2234f111cefd6/gemmi-0.4.9-cp38-cp38-macosx_10_9_x86_64.whl#sha256=b9e6335aa3191164ab0225ff29fa57a73019a8b6c1cf3f93a614526da957bdc2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,656   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e1/e1/d92de9990dd38683f20dba5974b7abff16748fe7dafe93693c9579ab64a3/gemmi-0.4.9-cp38-cp38-manylinux2010_i686.whl#sha256=0cc67ddbdf4d2f8db4a08c682f5bd180cf1d9d2af95fc460178d44cfd1f56f74 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,656   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4b/e7/f29a3313d0f0ebb7cb7f30157f5e72360811dfe3967e54d908156155086a/gemmi-0.4.9-cp38-cp38-manylinux2010_x86_64.whl#sha256=d7bf780c00febd2a94070676dd9768e6dfbc04beecb1c4b974fe7f815ab5cb95 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,657   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/50/c8/52ad765f76e715a19ecd1b05d6b2f61e3022037343fdd21ac596f8b61ef0/gemmi-0.4.9-cp38-cp38-win32.whl#sha256=975416e0a64dee3374b85def84025e197b4a3aeb07995644085a1b8c63488f25 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,657   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4d/2e/8a73d84362328ea3326470970f038a015a4dfd239c7416f66bcd09e945b6/gemmi-0.4.9-cp38-cp38-win_amd64.whl#sha256=156ffccc92cfb4e91162fec04233ea34f8805743ca30cdb02f03385904f8c230 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,657   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fd/40/38935fe474a830829060f76364b181cb3530cc4e55f70eb5e703c2f35792/gemmi-0.4.9-cp39-cp39-macosx_10_9_x86_64.whl#sha256=91222254241a6f4902060de83af18187f9b9b5e2d2f0018fb0b71d34ea7fc977 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,657   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c1/60/bf7c8d55f0e01150736289648b9317afc8aaaaa341d2df736b88250aac1f/gemmi-0.4.9-cp39-cp39-manylinux2010_i686.whl#sha256=abdba8c7c038324d151b5cf0396486361a3be40cf175eec1fa480f7b3828664f (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,657   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fd/bd/bccc8fc52bcb02fed07fc82e1fc76470397705048a3c6464f769d20964d1/gemmi-0.4.9-cp39-cp39-manylinux2010_x86_64.whl#sha256=dc9adc300f31cf721e11ba2b84840b9829edb702fc2960839c53009537b7458e (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,657   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d8/f4/8b77aaff5a83c69d45aa84dbe95df55a1f881b67792c63ada24a1cc3b787/gemmi-0.4.9-cp39-cp39-win32.whl#sha256=819ded41b98463ed6dfac06826cf07fa5063691610507bbbf428e720b1e23ff2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,658   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/82/c8/81912349292efd57f8b418615c5f3d5989939a700fc1824ee0381c55cad7/gemmi-0.4.9-cp39-cp39-win_amd64.whl#sha256=c684fed655fd3d1a5d3a783da7307f47453c696314814824a5eda722c74d8ac3 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,658   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5f/09/b14a04e144961d07aa8d7794c2a74ca0a98ec3eef934cf5af385e7ea577f/gemmi-0.4.9-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=7fd801ce676f02587c5758915f40dbc8f3b325f93f0f79c5d26017b3716c1f22 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,658   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/72/78/3d88e30416ea7e5281a388c548786e42cc34d0a3dbc5b6c3ae99c4e9584c/gemmi-0.4.9-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=a4372a76f01e5cff060c16722b1065488170554c19207011093c9d706b81ad88 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,658   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/54/70/24d2179a9a315ee7697b89434fe4704fa976bc5f8f35bd36ada7d3146554/gemmi-0.4.9-pp36-pypy36_pp73-win32.whl#sha256=0b696745d4cc855bcf8b7b416c844de428278257394e227f052084a8f487d2e2 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,658   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6c/57/ae1e113330952b2dd3e16054607347065c39635d5b0eef42f82706c4573e/gemmi-0.4.9-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=7eb54586c8b44806d20049b5d4a89432cd4b069f85e9d701d0c9beca0288d689 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,659   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/e8/5f9736f5c9eb35d4e7e46863ae1178edc03ff57969c4ec2b410442bf588d/gemmi-0.4.9-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=f33eb94a59135f8c8aa52ab61b7fcd2e12302cc7aea98a0b52f26287935e7cb8 (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,659   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2d/a2/8fa1006b4b71ffb6127c284aa6a3ab434aeee124724333f338d6b8b63019/gemmi-0.4.9-pp37-pypy37_pp73-win32.whl#sha256=822158ddf54bdb96d7af781821acf8260c3d6577994ccab899ba085482a4db9d (from https://pypi.org/simple/gemmi/)
2021-09-24T22:58:02,659   Found link https://files.pythonhosted.org/packages/a3/07/40e5d0b8eeed379c2f0494b24d5777df3ad1df473e49f694688fe55d606c/gemmi-0.4.9.tar.gz#sha256=0a4a836227525dbcbe10743d9a5af8fd057c86fe3c7061e7e76eb1cf6ef2bdd1 (from https://pypi.org/simple/gemmi/), version: 0.4.9
2021-09-24T22:58:02,659 Fetching project page and analyzing links: https://www.piwheels.org/simple/gemmi/
2021-09-24T22:58:02,660 Getting page https://www.piwheels.org/simple/gemmi/
2021-09-24T22:58:02,661 Found index url https://www.piwheels.org/simple
2021-09-24T22:58:02,792   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d8bd66cc25d6b9604268b1b1602fd3e3128f5bd756f797d117b79de41bbaa3 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,792   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d8bd66cc25d6b9604268b1b1602fd3e3128f5bd756f797d117b79de41bbaa3 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,792   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.3-cp35-cp35m-linux_armv6l.whl#sha256=43cdde23b2327d4232b8dc272394d07e1ef9244fa065cd3a5098a832b7de5ec6 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,793   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.3-cp35-cp35m-linux_armv7l.whl#sha256=43cdde23b2327d4232b8dc272394d07e1ef9244fa065cd3a5098a832b7de5ec6 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,793   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.4-cp39-cp39-linux_armv6l.whl#sha256=f7084d7d7c2387e74a7745b09eb5311a55cd2d8effa42e3234b63173cac6ed4d (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,793   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.4-cp39-cp39-linux_armv7l.whl#sha256=f7084d7d7c2387e74a7745b09eb5311a55cd2d8effa42e3234b63173cac6ed4d (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,793   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp35-cp35m-linux_armv6l.whl#sha256=22b6cb0c5699f26be92623b5d8bd5e48c4252e647379c9259837689a13f069b8 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,793   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp35-cp35m-linux_armv7l.whl#sha256=22b6cb0c5699f26be92623b5d8bd5e48c4252e647379c9259837689a13f069b8 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,794   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp39-cp39-linux_armv6l.whl#sha256=c8b98718817bb2bce5cae6905eec804b07e480eb6a77265fa85c5fe8e3a759dc (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,794   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp39-cp39-linux_armv7l.whl#sha256=c8b98718817bb2bce5cae6905eec804b07e480eb6a77265fa85c5fe8e3a759dc (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,794   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp35-cp35m-linux_armv6l.whl#sha256=77f0f92c7f827784be41462b3969ebc0ad0b49796c999503f2633c2f476a18de (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,794   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp35-cp35m-linux_armv7l.whl#sha256=77f0f92c7f827784be41462b3969ebc0ad0b49796c999503f2633c2f476a18de (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,794   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp39-cp39-linux_armv6l.whl#sha256=23b75d17c30e0c453b94a79caab48a631c94404b92d2416a8acdf91ecb68c329 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,795   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp39-cp39-linux_armv7l.whl#sha256=23b75d17c30e0c453b94a79caab48a631c94404b92d2416a8acdf91ecb68c329 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,795   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=0fa0e00dda8349e934da9b378af10d708d0f1474244d39b834fb6b5424ce357f (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,795   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=0fa0e00dda8349e934da9b378af10d708d0f1474244d39b834fb6b5424ce357f (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,795   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.1-cp39-cp39-linux_armv6l.whl#sha256=8645b322266bef190cd2cc053a0943d9bb5b400f493ae0a4fb479dbcc4180950 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,795   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.1-cp39-cp39-linux_armv7l.whl#sha256=8645b322266bef190cd2cc053a0943d9bb5b400f493ae0a4fb479dbcc4180950 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,796   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.2-cp39-cp39-linux_armv6l.whl#sha256=39a8c7fb3ec3f9763f6805693416f2c075f33692d8523980a858d067fe9c69e9 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,796   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.2-cp39-cp39-linux_armv7l.whl#sha256=39a8c7fb3ec3f9763f6805693416f2c075f33692d8523980a858d067fe9c69e9 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,796   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.4-cp39-cp39-linux_armv6l.whl#sha256=46bbb0f09c704cd8ab8011fad111e08a607fd5f064fa0041f56ec1c62b8e74c6 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,796   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.4-cp39-cp39-linux_armv7l.whl#sha256=46bbb0f09c704cd8ab8011fad111e08a607fd5f064fa0041f56ec1c62b8e74c6 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,796   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.7-cp39-cp39-linux_armv6l.whl#sha256=d18908fbee345739936f350997077c40e37e833fe6d7d1321687b24a37f65eda (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,797   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.7-cp39-cp39-linux_armv7l.whl#sha256=d18908fbee345739936f350997077c40e37e833fe6d7d1321687b24a37f65eda (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,797   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp35-cp35m-linux_armv6l.whl#sha256=b2677502c3949c461c4e6b1f2dca53fc07af03da210f8aaa0b1cb868cefbf662 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,797   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp35-cp35m-linux_armv7l.whl#sha256=b2677502c3949c461c4e6b1f2dca53fc07af03da210f8aaa0b1cb868cefbf662 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,797   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp37-cp37m-linux_armv6l.whl#sha256=7f334e1ca8c5bca7889987ae1c54c4cfaf43efeb04c4283e5b7344efe680c5e0 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,797   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp37-cp37m-linux_armv7l.whl#sha256=7f334e1ca8c5bca7889987ae1c54c4cfaf43efeb04c4283e5b7344efe680c5e0 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,798   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp39-cp39-linux_armv6l.whl#sha256=6d883f4bfcb7f363631a83f8067c8e0bd98d076ff2b69b0cb1792f543139c256 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,798   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp39-cp39-linux_armv7l.whl#sha256=6d883f4bfcb7f363631a83f8067c8e0bd98d076ff2b69b0cb1792f543139c256 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,798   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp35-cp35m-linux_armv6l.whl#sha256=d74009113ee2e6167359cfc898acf95ba4a712e96633181a090ff7c93925f5ce (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,798   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp35-cp35m-linux_armv7l.whl#sha256=d74009113ee2e6167359cfc898acf95ba4a712e96633181a090ff7c93925f5ce (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,798   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp37-cp37m-linux_armv6l.whl#sha256=f902d886318bef1f63084c8abf048708dcfc1bdf639d67c16f070410c29e12db (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,799   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp37-cp37m-linux_armv7l.whl#sha256=f902d886318bef1f63084c8abf048708dcfc1bdf639d67c16f070410c29e12db (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,799   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp39-cp39-linux_armv6l.whl#sha256=ecb1d58813e479b6b68b682e7ad8914e31dd13b3b301dd7204a52e89ff165e0b (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,799   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp39-cp39-linux_armv7l.whl#sha256=ecb1d58813e479b6b68b682e7ad8914e31dd13b3b301dd7204a52e89ff165e0b (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,799   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp35-cp35m-linux_armv6l.whl#sha256=6442245c6774979b47c4e06491b89130ca4a49e4ccbe21dab88a9c62b66c774f (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,799   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp35-cp35m-linux_armv7l.whl#sha256=6442245c6774979b47c4e06491b89130ca4a49e4ccbe21dab88a9c62b66c774f (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,800   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp37-cp37m-linux_armv6l.whl#sha256=d38028f376b07cd6b0230bb58a4c19d5ba837b899cd8ab6640341ddbe00eaf1a (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,800   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp37-cp37m-linux_armv7l.whl#sha256=d38028f376b07cd6b0230bb58a4c19d5ba837b899cd8ab6640341ddbe00eaf1a (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,800   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp39-cp39-linux_armv6l.whl#sha256=7a71f294832617a72c2b09f4eb56f68efa939808bb13d315d255d45d4fe72b16 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,800   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp39-cp39-linux_armv7l.whl#sha256=7a71f294832617a72c2b09f4eb56f68efa939808bb13d315d255d45d4fe72b16 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,800   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp35-cp35m-linux_armv6l.whl#sha256=cd4a41dc4421d9c0691772d8f2168bb365e517ac7217cb052d6713bbccc5305e (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,801   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp35-cp35m-linux_armv7l.whl#sha256=cd4a41dc4421d9c0691772d8f2168bb365e517ac7217cb052d6713bbccc5305e (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,801   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp37-cp37m-linux_armv6l.whl#sha256=df534bcd0117e11f2e4a2f83c4a05ff2fa9d29d35f7525550808ebacd7f443bb (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,801   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp37-cp37m-linux_armv7l.whl#sha256=df534bcd0117e11f2e4a2f83c4a05ff2fa9d29d35f7525550808ebacd7f443bb (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,801   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp39-cp39-linux_armv6l.whl#sha256=7d46a4fdcea047d9b8637a04813935beb5e5da741bceb0a1d690a7839080a40a (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,801   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp39-cp39-linux_armv7l.whl#sha256=7d46a4fdcea047d9b8637a04813935beb5e5da741bceb0a1d690a7839080a40a (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,802   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp35-cp35m-linux_armv6l.whl#sha256=b53875d6708aaf3f3b6315fbe1e72ef76c4215760d09635673e9b6e5f54df3e5 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,802   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp35-cp35m-linux_armv7l.whl#sha256=b53875d6708aaf3f3b6315fbe1e72ef76c4215760d09635673e9b6e5f54df3e5 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,802   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp37-cp37m-linux_armv6l.whl#sha256=581b43842fd2da1beebaa4df1a87066041fb5902883a519626d81ddc6fa2469a (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,802   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp37-cp37m-linux_armv7l.whl#sha256=581b43842fd2da1beebaa4df1a87066041fb5902883a519626d81ddc6fa2469a (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,802   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp39-cp39-linux_armv6l.whl#sha256=1d714c066088eb5213521e5096864257db64599979fc1064ebfbe7302199a2c6 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,803   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp39-cp39-linux_armv7l.whl#sha256=1d714c066088eb5213521e5096864257db64599979fc1064ebfbe7302199a2c6 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,803   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp35-cp35m-linux_armv6l.whl#sha256=e03cf06fbb6e76ee02b7aeadf4a35df8c381ea4fb93721c5ae76e655fc371dee (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,803   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp35-cp35m-linux_armv7l.whl#sha256=e03cf06fbb6e76ee02b7aeadf4a35df8c381ea4fb93721c5ae76e655fc371dee (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,803   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp37-cp37m-linux_armv6l.whl#sha256=969c981d811b123de397da46d72c3343995b102a311ac19bd74ef621148b4307 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,803   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp37-cp37m-linux_armv7l.whl#sha256=969c981d811b123de397da46d72c3343995b102a311ac19bd74ef621148b4307 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,803   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp39-cp39-linux_armv6l.whl#sha256=8cfb068becef1e8ce10a4cc8438544d203310a3a03519be5e1e89bde640015c1 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,804   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp39-cp39-linux_armv7l.whl#sha256=8cfb068becef1e8ce10a4cc8438544d203310a3a03519be5e1e89bde640015c1 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,804   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.9-cp35-cp35m-linux_armv6l.whl#sha256=535bae04fca6e24ea40c8521192837473e2acf105694933be7fd6d487858632c (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,804   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.9-cp35-cp35m-linux_armv7l.whl#sha256=535bae04fca6e24ea40c8521192837473e2acf105694933be7fd6d487858632c (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,804   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.9-cp37-cp37m-linux_armv6l.whl#sha256=d6f54f50c0058ae0f9233cd372b87396d3782f0aaddbab217635d0672aa4b262 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,804   Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.9-cp37-cp37m-linux_armv7l.whl#sha256=d6f54f50c0058ae0f9233cd372b87396d3782f0aaddbab217635d0672aa4b262 (from https://www.piwheels.org/simple/gemmi/)
2021-09-24T22:58:02,805 Skipping link: not a file: https://www.piwheels.org/simple/gemmi/
2021-09-24T22:58:02,805 Skipping link: not a file: https://pypi.org/simple/gemmi/
2021-09-24T22:58:02,827 Given no hashes to check 1 links for project 'gemmi': discarding no candidates
2021-09-24T22:58:02,845 Collecting gemmi==0.4.9
2021-09-24T22:58:02,847   Created temporary directory: /tmp/pip-unpack-i0_exjq2
2021-09-24T22:58:02,888   Downloading gemmi-0.4.9.tar.gz (668 kB)
2021-09-24T22:58:03,799   Added gemmi==0.4.9 from https://files.pythonhosted.org/packages/a3/07/40e5d0b8eeed379c2f0494b24d5777df3ad1df473e49f694688fe55d606c/gemmi-0.4.9.tar.gz#sha256=0a4a836227525dbcbe10743d9a5af8fd057c86fe3c7061e7e76eb1cf6ef2bdd1 to build tracker '/tmp/pip-req-tracker-6qtry1zn'
2021-09-24T22:58:03,800     Running setup.py (path:/tmp/pip-wheel-bj_iwfi5/gemmi_07cf0dc31f5e49f5ba0964b9bb42a948/setup.py) egg_info for package gemmi
2021-09-24T22:58:03,801     Created temporary directory: /tmp/pip-pip-egg-info-1p59g1bk
2021-09-24T22:58:03,801     Running command python setup.py egg_info
2021-09-24T22:58:04,824     running egg_info
2021-09-24T22:58:04,826     creating /tmp/pip-pip-egg-info-1p59g1bk/gemmi.egg-info
2021-09-24T22:58:04,829     writing /tmp/pip-pip-egg-info-1p59g1bk/gemmi.egg-info/PKG-INFO
2021-09-24T22:58:04,832     writing dependency_links to /tmp/pip-pip-egg-info-1p59g1bk/gemmi.egg-info/dependency_links.txt
2021-09-24T22:58:04,834     writing top-level names to /tmp/pip-pip-egg-info-1p59g1bk/gemmi.egg-info/top_level.txt
2021-09-24T22:58:04,836     writing manifest file '/tmp/pip-pip-egg-info-1p59g1bk/gemmi.egg-info/SOURCES.txt'
2021-09-24T22:58:05,002     reading manifest file '/tmp/pip-pip-egg-info-1p59g1bk/gemmi.egg-info/SOURCES.txt'
2021-09-24T22:58:05,004     reading manifest template 'MANIFEST.in'
2021-09-24T22:58:05,151     adding license file 'LICENSE.txt'
2021-09-24T22:58:05,166     writing manifest file '/tmp/pip-pip-egg-info-1p59g1bk/gemmi.egg-info/SOURCES.txt'
2021-09-24T22:58:05,239   Source in /tmp/pip-wheel-bj_iwfi5/gemmi_07cf0dc31f5e49f5ba0964b9bb42a948 has version 0.4.9, which satisfies requirement gemmi==0.4.9 from https://files.pythonhosted.org/packages/a3/07/40e5d0b8eeed379c2f0494b24d5777df3ad1df473e49f694688fe55d606c/gemmi-0.4.9.tar.gz#sha256=0a4a836227525dbcbe10743d9a5af8fd057c86fe3c7061e7e76eb1cf6ef2bdd1
2021-09-24T22:58:05,240   Removed gemmi==0.4.9 from https://files.pythonhosted.org/packages/a3/07/40e5d0b8eeed379c2f0494b24d5777df3ad1df473e49f694688fe55d606c/gemmi-0.4.9.tar.gz#sha256=0a4a836227525dbcbe10743d9a5af8fd057c86fe3c7061e7e76eb1cf6ef2bdd1 from build tracker '/tmp/pip-req-tracker-6qtry1zn'
2021-09-24T22:58:05,244 Created temporary directory: /tmp/pip-unpack-jb006e5w
2021-09-24T22:58:05,245 Building wheels for collected packages: gemmi
2021-09-24T22:58:05,250   Created temporary directory: /tmp/pip-wheel-qz__8tts
2021-09-24T22:58:05,250   Building wheel for gemmi (setup.py): started
2021-09-24T22:58:05,251   Destination directory: /tmp/pip-wheel-qz__8tts
2021-09-24T22:58:05,251   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bj_iwfi5/gemmi_07cf0dc31f5e49f5ba0964b9bb42a948/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bj_iwfi5/gemmi_07cf0dc31f5e49f5ba0964b9bb42a948/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qz__8tts
2021-09-24T22:58:06,273   running bdist_wheel
2021-09-24T22:58:06,278   running build
2021-09-24T22:58:06,278   running build_py
2021-09-24T22:58:06,421   creating build
2021-09-24T22:58:06,421   creating build/lib.linux-armv7l-3.9
2021-09-24T22:58:06,422   creating build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,423   copying examples/matthews.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,426   copying examples/aafreq.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,427   copying examples/rama_plot.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,429   copying examples/hello.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,430   copying examples/patterson_slice.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,432   copying examples/maskdiff.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,434   copying examples/__main__.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,435   copying examples/weight.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,437   copying examples/ccd_subgraph.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,439   copying examples/cif_i_sigi.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,441   copying examples/simple_search.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,443   copying examples/multiproc.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,445   copying examples/ccd_gi.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,447   copying examples/__init__.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,448   copying examples/from_json.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,450   copying examples/maskcheck.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,452   copying examples/merge_mtz_mmcif.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,454   copying examples/rama_gather.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,456   copying examples/map2mtz.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,458   copying examples/long_geom.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,460   copying examples/mtrix_iso.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,461   copying examples/sub_ccd.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,463   copying examples/monomers.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,466   copying examples/mtz_i_sigi.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,468   copying examples/col_order.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-09-24T22:58:06,471   running build_clib
2021-09-24T22:58:06,479   building 'gemmi_zlib' library
2021-09-24T22:58:06,481   creating build/temp.linux-armv7l-3.9
2021-09-24T22:58:06,481   creating build/temp.linux-armv7l-3.9/third_party
2021-09-24T22:58:06,482   creating build/temp.linux-armv7l-3.9/third_party/zlib
2021-09-24T22:58:06,482   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/adler32.c -o build/temp.linux-armv7l-3.9/third_party/zlib/adler32.o
2021-09-24T22:58:06,841   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/crc32.c -o build/temp.linux-armv7l-3.9/third_party/zlib/crc32.o
2021-09-24T22:58:07,262   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzlib.c -o build/temp.linux-armv7l-3.9/third_party/zlib/gzlib.o
2021-09-24T22:58:07,738   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzread.c -o build/temp.linux-armv7l-3.9/third_party/zlib/gzread.o
2021-09-24T22:58:08,333   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inflate.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inflate.o
2021-09-24T22:58:10,194   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inftrees.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inftrees.o
2021-09-24T22:58:10,548   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inffast.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inffast.o
2021-09-24T22:58:10,936   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/zutil.c -o build/temp.linux-armv7l-3.9/third_party/zlib/zutil.o
2021-09-24T22:58:11,141   arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-3.9/libgemmi_zlib.a build/temp.linux-armv7l-3.9/third_party/zlib/adler32.o build/temp.linux-armv7l-3.9/third_party/zlib/crc32.o build/temp.linux-armv7l-3.9/third_party/zlib/gzlib.o build/temp.linux-armv7l-3.9/third_party/zlib/gzread.o build/temp.linux-armv7l-3.9/third_party/zlib/inflate.o build/temp.linux-armv7l-3.9/third_party/zlib/inftrees.o build/temp.linux-armv7l-3.9/third_party/zlib/inffast.o build/temp.linux-armv7l-3.9/third_party/zlib/zutil.o
2021-09-24T22:58:11,198   running build_ext
2021-09-24T22:58:11,207   creating tmp
2021-09-24T22:58:11,207   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpvqhqio2b.cpp -o tmp/tmpvqhqio2b.o -std=c++17
2021-09-24T22:58:11,309   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmptkjjubap.cpp -o tmp/tmptkjjubap.o -fvisibility=hidden
2021-09-24T22:58:11,403   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpife3owtt.cpp -o tmp/tmpife3owtt.o -g0
2021-09-24T22:58:11,498   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmp6d0nnhxn.cpp -o tmp/tmp6d0nnhxn.o -Wl,-s
2021-09-24T22:58:11,595   building 'gemmi' extension
2021-09-24T22:58:11,623   creating build/temp.linux-armv7l-3.9/python
2021-09-24T22:58:11,625   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/align.cpp -o build/temp.linux-armv7l-3.9/python/align.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T22:58:39,094   In file included from /usr/include/c++/10/vector:72,
2021-09-24T22:58:39,095                    from /usr/include/c++/10/functional:62,
2021-09-24T22:58:39,095                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:58:39,095                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:58:39,095                    from include/gemmi/model.hpp:8,
2021-09-24T22:58:39,096                    from include/gemmi/align.hpp:8,
2021-09-24T22:58:39,096                    from python/align.cpp:3:
2021-09-24T22:58:39,096   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Position&}; _Tp = gemmi::Position; _Alloc = std::allocator<gemmi::Position>]’:
2021-09-24T22:58:39,096   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Position>::iterator’ changed in GCC 7.1
2021-09-24T22:58:39,096     426 |       vector<_Tp, _Alloc>::
2021-09-24T22:58:39,096         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T22:58:42,808   In file included from /usr/include/c++/10/vector:67,
2021-09-24T22:58:42,808                    from /usr/include/c++/10/functional:62,
2021-09-24T22:58:42,808                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:58:42,808                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:58:42,809                    from include/gemmi/model.hpp:8,
2021-09-24T22:58:42,809                    from include/gemmi/align.hpp:8,
2021-09-24T22:58:42,809                    from python/align.cpp:3:
2021-09-24T22:58:42,809   /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::SupResult gemmi::calculate_superposition(gemmi::ConstResidueSpan, gemmi::ConstResidueSpan, gemmi::PolymerType, gemmi::SupSelect, char, bool)’:
2021-09-24T22:58:42,809   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-09-24T22:58:42,809    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T22:58:42,809         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T22:58:42,810   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-09-24T22:58:42,810    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T22:58:42,810         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T22:58:42,810   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-09-24T22:58:42,810    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T22:58:42,810         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T22:58:42,811   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-09-24T22:58:42,811    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T22:58:42,811         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T22:58:42,995   In file included from /usr/include/c++/10/vector:72,
2021-09-24T22:58:42,995                    from /usr/include/c++/10/functional:62,
2021-09-24T22:58:42,995                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:58:42,995                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:58:42,995                    from include/gemmi/model.hpp:8,
2021-09-24T22:58:42,995                    from include/gemmi/align.hpp:8,
2021-09-24T22:58:42,996                    from python/align.cpp:3:
2021-09-24T22:58:42,996   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T22:58:42,996   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T22:58:42,996     184 |     vector<_Tp, _Alloc>::
2021-09-24T22:58:42,996         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T22:58:42,996   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T22:58:42,996   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T22:58:43,164   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Selection::AtomInequality}; _Tp = gemmi::Selection::AtomInequality; _Alloc = std::allocator<gemmi::Selection::AtomInequality>]’:
2021-09-24T22:58:43,164   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Selection::AtomInequality>::iterator’ changed in GCC 7.1
2021-09-24T22:58:43,164     426 |       vector<_Tp, _Alloc>::
2021-09-24T22:58:43,164         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T22:58:44,745   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::impl::parse_cid(const string&, gemmi::Selection&)’:
2021-09-24T22:58:44,745   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Selection::AtomInequality*, std::vector<gemmi::Selection::AtomInequality> >’ changed in GCC 7.1
2021-09-24T22:58:44,745     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T22:58:44,745         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:58:45,546   In file included from /usr/include/c++/10/vector:67,
2021-09-24T22:58:45,546                    from /usr/include/c++/10/functional:62,
2021-09-24T22:58:45,546                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:58:45,546                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:58:45,546                    from include/gemmi/model.hpp:8,
2021-09-24T22:58:45,547                    from include/gemmi/align.hpp:8,
2021-09-24T22:58:45,547                    from python/align.cpp:3:
2021-09-24T22:58:45,547   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Selection::remove_selected(T&) const [with T = gemmi::Model]’:
2021-09-24T22:58:45,547   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:58:45,547    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T22:58:45,547         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:58:46,331   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Selection::remove_not_selected(T&) const [with T = gemmi::Model]’:
2021-09-24T22:58:46,331   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:58:46,331    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T22:58:46,331         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:58:47,791   In file included from /usr/include/c++/10/vector:66,
2021-09-24T22:58:47,791                    from /usr/include/c++/10/functional:62,
2021-09-24T22:58:47,791                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:58:47,791                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:58:47,791                    from include/gemmi/model.hpp:8,
2021-09-24T22:58:47,792                    from include/gemmi/align.hpp:8,
2021-09-24T22:58:47,792                    from python/align.cpp:3:
2021-09-24T22:58:47,792   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’:
2021-09-24T22:58:47,792   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T22:58:47,792      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T22:58:47,792         |         ^~~~~~~~~~~~~
2021-09-24T22:58:47,792   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T22:58:55,412   In file included from python/common.h:3,
2021-09-24T22:58:55,412                    from python/align.cpp:7:
2021-09-24T22:58:55,412   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >; Sentinel = gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’:
2021-09-24T22:58:55,413   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:58:55,413    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T22:58:55,413         |          ^~~~~~~~~~~~~
2021-09-24T22:58:55,413   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:58:55,413   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:58:55,495   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Type&, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Type = gemmi::FilterProxy<gemmi::Selection, gemmi::Atom>; Extra = {}]’:
2021-09-24T22:58:55,495   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1989:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:58:55,495    1989 |     return make_iterator<Policy>(std::begin(value), std::end(value), extra...);
2021-09-24T22:58:55,495         |                                                                              ^
2021-09-24T22:58:55,496   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1989:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:58:59,894   In file included from /usr/include/c++/10/vector:67,
2021-09-24T22:58:59,894                    from /usr/include/c++/10/functional:62,
2021-09-24T22:58:59,894                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:58:59,894                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:58:59,894                    from include/gemmi/model.hpp:8,
2021-09-24T22:58:59,895                    from include/gemmi/align.hpp:8,
2021-09-24T22:58:59,895                    from python/align.cpp:3:
2021-09-24T22:58:59,895   /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster<Type, Value>::load(pybind11::handle, bool) [with Type = std::vector<gemmi::Position>; Value = gemmi::Position]’:
2021-09-24T22:58:59,895   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-09-24T22:58:59,895    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T22:58:59,895         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T22:59:00,004   In file included from /usr/include/c++/10/vector:66,
2021-09-24T22:59:00,004                    from /usr/include/c++/10/functional:62,
2021-09-24T22:59:00,004                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:59:00,005                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:59:00,005                    from include/gemmi/model.hpp:8,
2021-09-24T22:59:00,005                    from include/gemmi/align.hpp:8,
2021-09-24T22:59:00,005                    from python/align.cpp:3:
2021-09-24T22:59:00,005   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T22:59:00,005   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T22:59:00,005      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T22:59:00,005         |         ^~~~~~~~~~~~~
2021-09-24T22:59:00,006   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T22:59:00,114   In file included from /usr/include/c++/10/vector:72,
2021-09-24T22:59:00,114                    from /usr/include/c++/10/functional:62,
2021-09-24T22:59:00,115                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:59:00,115                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:59:00,115                    from include/gemmi/model.hpp:8,
2021-09-24T22:59:00,115                    from include/gemmi/align.hpp:8,
2021-09-24T22:59:00,115                    from python/align.cpp:3:
2021-09-24T22:59:00,115   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T22:59:00,115   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T22:59:00,115     426 |       vector<_Tp, _Alloc>::
2021-09-24T22:59:00,116         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:00,285   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Selection::add_matching_children(const T&, T&) const [with T = gemmi::Model]’:
2021-09-24T22:59:00,286   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T22:59:00,286     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T22:59:00,286         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:01,433   In file included from /usr/include/c++/10/vector:66,
2021-09-24T22:59:01,433                    from /usr/include/c++/10/functional:62,
2021-09-24T22:59:01,433                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:59:01,433                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:59:01,433                    from include/gemmi/model.hpp:8,
2021-09-24T22:59:01,433                    from include/gemmi/align.hpp:8,
2021-09-24T22:59:01,434                    from python/align.cpp:3:
2021-09-24T22:59:01,434   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’:
2021-09-24T22:59:01,434   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T22:59:01,434      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T22:59:01,434         |         ^~~~~~~~~~~~~
2021-09-24T22:59:01,434   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T22:59:01,747   In file included from /usr/include/c++/10/vector:72,
2021-09-24T22:59:01,748                    from /usr/include/c++/10/functional:62,
2021-09-24T22:59:01,748                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:59:01,748                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:59:01,748                    from include/gemmi/model.hpp:8,
2021-09-24T22:59:01,748                    from include/gemmi/align.hpp:8,
2021-09-24T22:59:01,748                    from python/align.cpp:3:
2021-09-24T22:59:01,748   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-09-24T22:59:01,749   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-09-24T22:59:01,749     426 |       vector<_Tp, _Alloc>::
2021-09-24T22:59:01,749         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:01,796   /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster<Type, Value>::load(pybind11::handle, bool) [with Type = std::vector<double>; Value = double]’:
2021-09-24T22:59:01,797   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T22:59:01,797     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T22:59:01,797         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,353   In file included from /usr/include/c++/10/vector:66,
2021-09-24T22:59:02,353                    from /usr/include/c++/10/functional:62,
2021-09-24T22:59:02,353                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T22:59:02,353                    from /usr/include/c++/10/algorithm:74,
2021-09-24T22:59:02,354                    from include/gemmi/model.hpp:8,
2021-09-24T22:59:02,354                    from include/gemmi/align.hpp:8,
2021-09-24T22:59:02,354                    from python/align.cpp:3:
2021-09-24T22:59:02,354   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T22:59:02,354   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T22:59:02,354      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T22:59:02,354         |         ^~~~~~~~~~~~~
2021-09-24T22:59:02,355   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T22:59:02,530   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
2021-09-24T22:59:02,531   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T22:59:02,531     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:02,531         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,531     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:02,531         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,531     149 |            && __assignable>::
2021-09-24T22:59:02,531         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,531     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:02,532         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,766   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’:
2021-09-24T22:59:02,766   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T22:59:02,766      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T22:59:02,767         |         ^~~~~~~~~~~~~
2021-09-24T22:59:02,767   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T22:59:02,864   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::RefinementInfo::RefinementInfo(const gemmi::RefinementInfo&)’:
2021-09-24T22:59:02,864   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T22:59:02,864     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:02,864         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,864     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:02,864         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,865     149 |            && __assignable>::
2021-09-24T22:59:02,865         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,865     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:02,865         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,963   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’:
2021-09-24T22:59:02,963   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T22:59:02,963     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:02,963         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,963     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:02,963         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,963     149 |            && __assignable>::
2021-09-24T22:59:02,964         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,964     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:02,964         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,964   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T22:59:02,964     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:02,964         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,964     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:02,965         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,965     149 |            && __assignable>::
2021-09-24T22:59:02,965         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:02,965     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:02,965         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,098   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’:
2021-09-24T22:59:03,098   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T22:59:03,098     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:03,098         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,098     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:03,098         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,098     149 |            && __assignable>::
2021-09-24T22:59:03,099         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,099     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:03,099         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,099   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T22:59:03,099     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:03,099         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,099     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:03,100         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,100     149 |            && __assignable>::
2021-09-24T22:59:03,100         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,100     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:03,100         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,319   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’:
2021-09-24T22:59:03,319   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T22:59:03,319     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:03,319         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,320     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:03,320         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,320     149 |            && __assignable>::
2021-09-24T22:59:03,320         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:03,320     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:03,320         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,161   /usr/include/c++/10/bits/stl_uninitialized.h: In member function ‘gemmi::Structure gemmi::Structure::empty_copy() const’:
2021-09-24T22:59:04,161   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T22:59:04,162     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:04,162         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,162     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:04,162         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,162     149 |            && __assignable>::
2021-09-24T22:59:04,162         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,162     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:04,162         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,176   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T22:59:04,176     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:04,176         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,176     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:04,177         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,177     149 |            && __assignable>::
2021-09-24T22:59:04,177         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,177     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:04,177         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,177   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T22:59:04,178     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T22:59:04,178         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,178     148 |            && __is_trivial(_ValueType2)
2021-09-24T22:59:04,178         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,178     149 |            && __assignable>::
2021-09-24T22:59:04,179         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:04,179     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T22:59:04,179         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T22:59:05,885   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/ccp4.cpp -o build/temp.linux-armv7l-3.9/python/ccp4.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T22:59:38,284   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/cif.cpp -o build/temp.linux-armv7l-3.9/python/cif.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:00:29,654   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/custom.cpp -o build/temp.linux-armv7l-3.9/python/custom.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:00:34,961   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/elem.cpp -o build/temp.linux-armv7l-3.9/python/elem.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:01:04,000   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/gemmi.cpp -o build/temp.linux-armv7l-3.9/python/gemmi.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:01:27,261   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:01:27,262                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:01:27,262                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:01:27,262                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:01:27,262                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:01:27,262                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:01:27,262                    from python/common.h:3,
2021-09-24T23:01:27,262                    from python/gemmi.cpp:3:
2021-09-24T23:01:27,263   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:01:27,263   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:01:27,263     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:01:27,263         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:01:28,217   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’:
2021-09-24T23:01:28,217   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:01:28,217     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:01:28,217         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:01:28,391   In file included from /usr/include/c++/10/functional:65,
2021-09-24T23:01:28,391                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:20,
2021-09-24T23:01:28,391                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:01:28,391                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:01:28,391                    from python/common.h:3,
2021-09-24T23:01:28,391                    from python/gemmi.cpp:3:
2021-09-24T23:01:28,391   /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::SmallStructure::remove_hydrogens()::<lambda(const gemmi::SmallStructure::Site&)> >]’:
2021-09-24T23:01:28,392   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:28,392     833 |     __remove_if(_ForwardIterator __first, _ForwardIterator __last,
2021-09-24T23:01:28,392         |     ^~~~~~~~~~~
2021-09-24T23:01:28,392   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:28,392   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:28,453   /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gemmi::SmallStructure::remove_hydrogens()’:
2021-09-24T23:01:28,453   /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:28,453     914 |       return std::__remove_if(__first, __last,
2021-09-24T23:01:28,453         |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-09-24T23:01:28,453     915 |          __gnu_cxx::__ops::__pred_iter(__pred));
2021-09-24T23:01:28,454         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:01:28,552   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:01:28,552                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:01:28,552                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:01:28,553                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:01:28,553                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:01:28,553                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:01:28,553                    from python/common.h:3,
2021-09-24T23:01:28,553                    from python/gemmi.cpp:3:
2021-09-24T23:01:28,553   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::SmallStructure::Site}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator<gemmi::SmallStructure::Site>]’:
2021-09-24T23:01:28,553   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::Site>::iterator’ changed in GCC 7.1
2021-09-24T23:01:28,553     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:01:28,554         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:01:28,710   /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::SmallStructure gemmi::mx_to_sx_structure(const gemmi::Structure&, int)’:
2021-09-24T23:01:28,710   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:28,710     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:01:28,710         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:01:28,997   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator<gemmi::SmallStructure::Site>]’:
2021-09-24T23:01:28,997   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::Site>::iterator’ changed in GCC 7.1
2021-09-24T23:01:28,997     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:01:28,997         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:01:29,130   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:01:29,130                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:01:29,130                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:01:29,130                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:01:29,131                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:01:29,131                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:01:29,131                    from python/common.h:3,
2021-09-24T23:01:29,131                    from python/gemmi.cpp:3:
2021-09-24T23:01:29,131   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<gemmi::SmallStructure::Site> gemmi::SmallStructure::get_all_unit_cell_sites() const’:
2021-09-24T23:01:29,131   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:29,131    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:01:29,132         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:01:29,132   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:29,132    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:01:29,132         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:01:33,880   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_misc(pybind11::module&)::<lambda(gemmi::SmallStructure&, const gemmi::SmallStructure::Site&)>, void, {gemmi::SmallStructure&, const gemmi::SmallStructure::Site&}, {pybind11::name, pybind11::is_method, pybind11::sibling}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:01:33,880   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:01:33,880    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:01:33,881         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:01:39,535   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/grid.cpp -o build/temp.linux-armv7l-3.9/python/grid.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:02:13,680   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:02:13,680                    from /usr/include/c++/10/functional:62,
2021-09-24T23:02:13,681                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:02:13,681                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:02:13,681                    from include/gemmi/grid.hpp:11,
2021-09-24T23:02:13,681                    from python/grid.cpp:13:
2021-09-24T23:02:13,681   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Blob&}; _Tp = gemmi::Blob; _Alloc = std::allocator<gemmi::Blob>]’:
2021-09-24T23:02:13,681   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Blob>::iterator’ changed in GCC 7.1
2021-09-24T23:02:13,681     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:02:13,681         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:02:18,255   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:02:18,255                    from /usr/include/c++/10/functional:62,
2021-09-24T23:02:18,255                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:02:18,256                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:02:18,256                    from include/gemmi/grid.hpp:11,
2021-09-24T23:02:18,256                    from python/grid.cpp:13:
2021-09-24T23:02:18,256   /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<gemmi::Blob> gemmi::find_blobs_by_flood_fill(const gemmi::Grid<float>&, const gemmi::BlobCriteria&)’:
2021-09-24T23:02:18,256   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Blob*, std::vector<gemmi::Blob> >’ changed in GCC 7.1
2021-09-24T23:02:18,256    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:02:18,256         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:02:41,396   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:02:41,396                    from /usr/include/c++/10/functional:62,
2021-09-24T23:02:41,397                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:02:41,397                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:02:41,397                    from include/gemmi/grid.hpp:11,
2021-09-24T23:02:41,397                    from python/grid.cpp:13:
2021-09-24T23:02:41,397   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Fractional&}; _Tp = gemmi::Fractional; _Alloc = std::allocator<gemmi::Fractional>]’:
2021-09-24T23:02:41,397   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Fractional>::iterator’ changed in GCC 7.1
2021-09-24T23:02:41,397     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:02:41,398         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:02:41,455   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:02:41,456                    from /usr/include/c++/10/functional:62,
2021-09-24T23:02:41,456                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:02:41,456                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:02:41,456                    from include/gemmi/grid.hpp:11,
2021-09-24T23:02:41,456                    from python/grid.cpp:13:
2021-09-24T23:02:41,456   /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster<Type, Value>::load(pybind11::handle, bool) [with Type = std::vector<gemmi::Fractional>; Value = gemmi::Fractional]’:
2021-09-24T23:02:41,456   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Fractional*, std::vector<gemmi::Fractional> >’ changed in GCC 7.1
2021-09-24T23:02:41,457    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:02:41,457         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:02:42,392   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/hkl.cpp -o build/temp.linux-armv7l-3.9/python/hkl.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:02:49,319   python/hkl.cpp: In lambda function:
2021-09-24T23:02:49,319   python/hkl.cpp:141:18: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
2021-09-24T23:02:49,319     141 |           return r;
2021-09-24T23:02:49,319         |                  ^
2021-09-24T23:03:13,768   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:03:13,769                    from include/gemmi/unitcell.hpp:10,
2021-09-24T23:03:13,769                    from python/hkl.cpp:3:
2021-09-24T23:03:13,769   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:03:13,769   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:03:13,769     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:03:13,769         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:03:16,669   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’:
2021-09-24T23:03:16,669   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:03:16,670     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:03:16,670         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:03:17,216   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:03:17,216   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:03:17,216     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:03:17,216         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:03:17,379   /usr/include/c++/10/bits/vector.tcc: In member function ‘gemmi::Mtz::Dataset& gemmi::Mtz::add_dataset(const string&)’:
2021-09-24T23:03:17,380   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:03:17,380     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:03:17,380         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:03:21,274   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::cif::Block}; _Tp = gemmi::ReflnBlock; _Alloc = std::allocator<gemmi::ReflnBlock>]’:
2021-09-24T23:03:21,274   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::ReflnBlock>::iterator’ changed in GCC 7.1
2021-09-24T23:03:21,274     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:03:21,274         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:03:21,274   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::ReflnBlock>::iterator’ changed in GCC 7.1
2021-09-24T23:03:28,958   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_hkl(pybind11::module&)::<lambda(gemmi::cif::Document&)>, std::vector<gemmi::ReflnBlock>, {gemmi::cif::Document&}, {pybind11::name, pybind11::scope, pybind11::sibling}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:03:28,958   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-09-24T23:03:28,959     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:03:28,959         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:03:31,301   In file included from python/common.h:3,
2021-09-24T23:03:31,301                    from python/hkl.cpp:11:
2021-09-24T23:03:31,301   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >; ValueType = gemmi::ReflnBlock&; Extra = {}]’:
2021-09-24T23:03:31,301   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-09-24T23:03:31,301    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:03:31,302         |          ^~~~~~~~~~~~~
2021-09-24T23:03:31,302   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-09-24T23:03:31,302   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-09-24T23:03:31,390   In file included from python/hkl.cpp:14:
2021-09-24T23:03:31,390   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::ReflnBlock>, pybind11::class_<std::vector<gemmi::ReflnBlock>, std::unique_ptr<std::vector<gemmi::ReflnBlock, std::allocator<gemmi::ReflnBlock> >, std::default_delete<std::vector<gemmi::ReflnBlock, std::allocator<gemmi::ReflnBlock> > > > > >::<lambda(std::vector<gemmi::ReflnBlock>&)>, pybind11::iterator, {std::vector<gemmi::ReflnBlock, std::allocator<gemmi::ReflnBlock> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:03:31,390   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-09-24T23:03:31,390     318 |                    v.begin(), v.end());
2021-09-24T23:03:31,390         |                                      ^
2021-09-24T23:03:43,111   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/meta.cpp -o build/temp.linux-armv7l-3.9/python/meta.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:04:21,954   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:21,954                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:21,955                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:21,955                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:21,955                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:21,955                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:21,955                    from python/common.h:3,
2021-09-24T23:04:21,955                    from python/meta.cpp:3:
2021-09-24T23:04:21,955   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::NcsOp&}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-09-24T23:04:21,955   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-09-24T23:04:21,956     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:21,956         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,012   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-09-24T23:04:22,012   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:22,012     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,012         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,013   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:22,013     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:04:22,013         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,065   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-09-24T23:04:22,065   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,065     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,066         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,066   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,103   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-09-24T23:04:22,104   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,104     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,104         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,435   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:04:22,435   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,436     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:22,436         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,565   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:04:22,565   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:22,565     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,565         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,566   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:22,567     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:04:22,567         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,679   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:04:22,679   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,679     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,679         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,679   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,779   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:04:22,780   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,780     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,780         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,855   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:04:22,855   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,855     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,855         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:22,855   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,916   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:04:22,916   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-09-24T23:04:22,916     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:22,916         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:23,204   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-09-24T23:04:23,204   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-09-24T23:04:23,204     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:23,205         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:23,205   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-09-24T23:04:23,295   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-09-24T23:04:23,296   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-09-24T23:04:23,296     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:23,296         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:29,054   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:29,054                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:29,054                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:29,055                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:29,055                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:29,055                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:29,055                    from python/common.h:3,
2021-09-24T23:04:29,055                    from python/meta.cpp:3:
2021-09-24T23:04:29,055   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, const T&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:29,055   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:29,055    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:29,056         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:29,089   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, pybind11::slice)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:29,089   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:29,089    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:29,089         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:29,427   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, const T&)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:29,428   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:29,428    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:29,428         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:29,556   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, pybind11::slice)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:29,557   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:29,557    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:29,557         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:29,745   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, pybind11::slice)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:29,745   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:29,746    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:29,746         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:29,961   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, pybind11::slice)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:29,962   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:29,962    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:29,962         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:31,800   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(const std::vector<gemmi::NcsOp>&, pybind11::slice)>, std::vector<gemmi::NcsOp>*, {const std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:31,800   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:31,800    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:31,800         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:32,006   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(const std::vector<gemmi::Connection>&, pybind11::slice)>, std::vector<gemmi::Connection>*, {const std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:32,007   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:32,007    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:32,007         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:35,065   In file included from python/common.h:3,
2021-09-24T23:04:35,065                    from python/meta.cpp:3:
2021-09-24T23:04:35,065   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >; ValueType = gemmi::Assembly&; Extra = {}]’:
2021-09-24T23:04:35,066   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:35,066    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:04:35,066         |          ^~~~~~~~~~~~~
2021-09-24T23:04:35,066   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:35,066   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:35,120   In file included from python/meta.cpp:5:
2021-09-24T23:04:35,121   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&)>, pybind11::iterator, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:35,121   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:35,121     318 |                    v.begin(), v.end());
2021-09-24T23:04:35,121         |                                      ^
2021-09-24T23:04:35,234   In file included from python/common.h:3,
2021-09-24T23:04:35,234                    from python/meta.cpp:3:
2021-09-24T23:04:35,234   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >; ValueType = gemmi::Assembly::Operator&; Extra = {}]’:
2021-09-24T23:04:35,234   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:35,235    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:04:35,235         |          ^~~~~~~~~~~~~
2021-09-24T23:04:35,235   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:35,289   In file included from python/meta.cpp:5:
2021-09-24T23:04:35,289   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&)>, pybind11::iterator, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:35,290   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:35,290     318 |                    v.begin(), v.end());
2021-09-24T23:04:35,290         |                                      ^
2021-09-24T23:04:35,318   In file included from python/common.h:3,
2021-09-24T23:04:35,318                    from python/meta.cpp:3:
2021-09-24T23:04:35,318   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >; ValueType = gemmi::Connection&; Extra = {}]’:
2021-09-24T23:04:35,319   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:35,319    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:04:35,319         |          ^~~~~~~~~~~~~
2021-09-24T23:04:35,319   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:35,374   In file included from python/meta.cpp:5:
2021-09-24T23:04:35,374   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&)>, pybind11::iterator, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:35,374   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:35,374     318 |                    v.begin(), v.end());
2021-09-24T23:04:35,374         |                                      ^
2021-09-24T23:04:35,486   In file included from python/common.h:3,
2021-09-24T23:04:35,486                    from python/meta.cpp:3:
2021-09-24T23:04:35,486   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >; ValueType = gemmi::NcsOp&; Extra = {}]’:
2021-09-24T23:04:35,486   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:35,486    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:04:35,486         |          ^~~~~~~~~~~~~
2021-09-24T23:04:35,487   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:35,540   In file included from python/meta.cpp:5:
2021-09-24T23:04:35,541   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&)>, pybind11::iterator, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:35,541   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:35,541     318 |                    v.begin(), v.end());
2021-09-24T23:04:35,541         |                                      ^
2021-09-24T23:04:43,814   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:43,814                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:43,814                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:43,814                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:43,814                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:43,815                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:43,815                    from python/common.h:3,
2021-09-24T23:04:43,815                    from python/meta.cpp:3:
2021-09-24T23:04:43,815   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-09-24T23:04:43,815   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-09-24T23:04:43,815     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:43,815         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:43,872   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:43,873   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:43,873     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:43,873         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:43,978   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, const pybind11::iterable&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:43,978   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:43,978     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:43,978         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:43,979   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:43,979                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:43,979                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:43,979                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:43,979                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:43,979                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:43,979                    from python/common.h:3,
2021-09-24T23:04:43,980                    from python/meta.cpp:3:
2021-09-24T23:04:43,980   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:43,980    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:04:43,980         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,148   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:45,149                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:45,149                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:45,149                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:45,149                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:45,149                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:45,149                    from python/common.h:3,
2021-09-24T23:04:45,149                    from python/meta.cpp:3:
2021-09-24T23:04:45,150   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:04:45,150   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-09-24T23:04:45,150     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:45,150         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,343   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, const pybind11::iterable&)>’:
2021-09-24T23:04:45,343   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:45,344     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:45,344         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,344   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:45,344                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:45,344                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:45,345                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:45,345                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:45,345                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:45,345                    from python/common.h:3,
2021-09-24T23:04:45,345                    from python/meta.cpp:3:
2021-09-24T23:04:45,345   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:45,345    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:04:45,345         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,536   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:45,536                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:45,536                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:45,536                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:45,536                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:45,536                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:45,536                    from python/common.h:3,
2021-09-24T23:04:45,537                    from python/meta.cpp:3:
2021-09-24T23:04:45,537   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(const pybind11::iterable&)>’:
2021-09-24T23:04:45,537   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:45,537     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:45,537         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,669   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly::Operator}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:04:45,669   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-09-24T23:04:45,669     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:45,669         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,748   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:45,748   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:45,749     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:45,749         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,877   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:45,877   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:45,877     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:45,877         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:45,878   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:45,878                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:45,878                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:45,878                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:45,878                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:45,878                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:45,878                    from python/common.h:3,
2021-09-24T23:04:45,878                    from python/meta.cpp:3:
2021-09-24T23:04:45,878   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:45,879    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:04:45,879         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,146   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:46,146                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:46,146                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:46,147                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:46,147                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:46,147                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:46,147                    from python/common.h:3,
2021-09-24T23:04:46,147                    from python/meta.cpp:3:
2021-09-24T23:04:46,147   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-09-24T23:04:46,147   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-09-24T23:04:46,148     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:46,148         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,267   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:46,268                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:46,268                    from python/common.h:3,
2021-09-24T23:04:46,268                    from python/meta.cpp:3:
2021-09-24T23:04:46,268   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, DiffType)>, gemmi::Assembly, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,268   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:46,268    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,268         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,364   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, DiffType)>, gemmi::Assembly::Operator, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,364   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:46,365    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,365         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,411   /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, DiffType)>, gemmi::Connection, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>’:
2021-09-24T23:04:46,411   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:46,411    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,411         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,455   In file included from python/meta.cpp:5:
2021-09-24T23:04:46,455   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, DiffType, const T&)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, int, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,455   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:46,455     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:04:46,455         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,572   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:46,572                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:46,572                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:46,572                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:46,572                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:46,572                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:46,573                    from python/common.h:3,
2021-09-24T23:04:46,573                    from python/meta.cpp:3:
2021-09-24T23:04:46,573   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, DiffType)>, gemmi::NcsOp, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,573   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:46,573    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,573         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,615   In file included from python/meta.cpp:5:
2021-09-24T23:04:46,615   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, DiffType, const T&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, int, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,615   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:46,615     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:04:46,615         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,781   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:46,781                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:46,781                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:46,782                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:46,782                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:46,782                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:46,782                    from python/common.h:3,
2021-09-24T23:04:46,782                    from python/meta.cpp:3:
2021-09-24T23:04:46,782   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, DiffType)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,782   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:46,782    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,783         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,846   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, DiffType)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,846   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:46,847    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,847         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,879   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, DiffType)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,880   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:46,880    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,880         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:46,941   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, DiffType)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:46,942   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:04:46,942    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:04:46,942         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:47,682   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:47,682                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:47,682                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:47,683                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:47,683                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:47,683                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:47,683                    from python/common.h:3,
2021-09-24T23:04:47,683                    from python/meta.cpp:3:
2021-09-24T23:04:47,683   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:04:47,683   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-09-24T23:04:47,684     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:47,684         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:47,746   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:47,746                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:47,747                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:47,747                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:47,747                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:47,747                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:47,747                    from python/common.h:3,
2021-09-24T23:04:47,747                    from python/meta.cpp:3:
2021-09-24T23:04:47,747   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, const T&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:47,747   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:47,748    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:47,748         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:47,842   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:47,842                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:47,842                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:47,843                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:47,843                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:47,843                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:47,843                    from python/common.h:3,
2021-09-24T23:04:47,843                    from python/meta.cpp:3:
2021-09-24T23:04:47,843   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:04:47,843   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:47,843     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:47,843         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:47,845   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:47,846     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:04:47,846         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:47,904   In file included from python/meta.cpp:5:
2021-09-24T23:04:47,905   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, DiffType, const T&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, int, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:47,905   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:47,905     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:04:47,905         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:04:47,968   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:47,969                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:47,969                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:47,969                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:47,969                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:47,969                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:47,969                    from python/common.h:3,
2021-09-24T23:04:47,969                    from python/meta.cpp:3:
2021-09-24T23:04:47,969   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(const std::vector<gemmi::Assembly::Operator>&, pybind11::slice)>, std::vector<gemmi::Assembly::Operator>*, {const std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:47,969   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:47,970    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:47,970         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:49,348   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:04:49,349                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:49,349                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:49,349                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:49,349                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:49,349                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:49,349                    from python/common.h:3,
2021-09-24T23:04:49,349                    from python/meta.cpp:3:
2021-09-24T23:04:49,349   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >; _ForwardIterator = gemmi::Assembly::Operator*; bool _TrivialValueTypes = false]’:
2021-09-24T23:04:49,350   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:49,350      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:04:49,350         |         ^~~~~~~~~~~~~
2021-09-24T23:04:49,350   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:49,420   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, const std::vector<gemmi::Assembly::Operator>&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, const std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:49,420   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:49,420     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:04:49,420         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,420     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:04:49,421         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,421     149 |            && __assignable>::
2021-09-24T23:04:49,421         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,421     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:04:49,421         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,422   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:49,422     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:04:49,422         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,422     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:04:49,422         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,422     149 |            && __assignable>::
2021-09-24T23:04:49,423         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,423     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:04:49,423         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,509   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:04:49,510   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:04:49,510     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:04:49,510         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,510     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:04:49,510         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,510     149 |            && __assignable>::
2021-09-24T23:04:49,510         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:49,511     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:04:49,511         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:50,236   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:50,236                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:50,237                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:50,237                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:50,237                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:50,237                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:50,237                    from python/common.h:3,
2021-09-24T23:04:50,237                    from python/meta.cpp:3:
2021-09-24T23:04:50,237   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly&}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-09-24T23:04:50,237   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-09-24T23:04:50,237     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:04:50,238         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:50,309   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:50,310                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:50,310                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:50,310                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:50,310                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:50,310                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:50,310                    from python/common.h:3,
2021-09-24T23:04:50,310                    from python/meta.cpp:3:
2021-09-24T23:04:50,310   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, const T&)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:50,310   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:50,311    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:50,311         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:50,400   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:50,400                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:50,400                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:50,400                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:50,401                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:50,401                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:50,401                    from python/common.h:3,
2021-09-24T23:04:50,401                    from python/meta.cpp:3:
2021-09-24T23:04:50,401   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-09-24T23:04:50,401   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:50,401     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:04:50,401         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:50,403   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:50,404     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:04:50,404         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:50,490   In file included from python/meta.cpp:5:
2021-09-24T23:04:50,490   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, DiffType, const T&)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, int, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:50,490   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::const_iterator’ changed in GCC 7.1
2021-09-24T23:04:50,490     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:04:50,490         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:04:50,546   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:50,547                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:50,547                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:50,547                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:50,547                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:50,547                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:50,547                    from python/common.h:3,
2021-09-24T23:04:50,547                    from python/meta.cpp:3:
2021-09-24T23:04:50,548   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:50,548   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:50,548     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:50,548         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:50,836   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:50,836                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:50,836                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:50,836                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:50,837                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:50,837                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:50,837                    from python/common.h:3,
2021-09-24T23:04:50,837                    from python/meta.cpp:3:
2021-09-24T23:04:50,837   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(const std::vector<gemmi::Assembly>&, pybind11::slice)>, std::vector<gemmi::Assembly>*, {const std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:50,837   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:50,837    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:04:50,837         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:04:51,012   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:04:51,013                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:51,013                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:51,013                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:51,013                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:51,013                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:51,013                    from python/common.h:3,
2021-09-24T23:04:51,013                    from python/meta.cpp:3:
2021-09-24T23:04:51,014   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:51,014   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:51,014     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:04:51,014         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,015   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:04:51,015                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:51,015                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:51,015                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:51,015                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:51,015                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:51,015                    from python/common.h:3,
2021-09-24T23:04:51,015                    from python/meta.cpp:3:
2021-09-24T23:04:51,016   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:51,016    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:04:51,016         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,212   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:04:51,212                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:04:51,212                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:04:51,212                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:04:51,212                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:04:51,212                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:04:51,212                    from python/common.h:3,
2021-09-24T23:04:51,213                    from python/meta.cpp:3:
2021-09-24T23:04:51,213   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >; _ForwardIterator = gemmi::NcsOp*; bool _TrivialValueTypes = false]’:
2021-09-24T23:04:51,213   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:51,213      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:04:51,213         |         ^~~~~~~~~~~~~
2021-09-24T23:04:51,213   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:51,272   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, const std::vector<gemmi::NcsOp>&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, const std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:51,272   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:51,272     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:04:51,272         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,273     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:04:51,273         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,273     149 |            && __assignable>::
2021-09-24T23:04:51,273         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,273     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:04:51,273         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,273   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:04:51,273     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:04:51,274         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,274     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:04:51,274         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,274     149 |            && __assignable>::
2021-09-24T23:04:51,274         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,274     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:04:51,274         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,351   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’:
2021-09-24T23:04:51,352   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:51,352      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:04:51,352         |         ^~~~~~~~~~~~~
2021-09-24T23:04:51,352   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:51,444   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, const std::vector<gemmi::Assembly>&)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, const std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:04:51,444   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:51,444     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:04:51,445         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,445     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:04:51,445         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,445     149 |            && __assignable>::
2021-09-24T23:04:51,445         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,445     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:04:51,445         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,445   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:04:51,446     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:04:51,446         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,446     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:04:51,446         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,446     149 |            && __assignable>::
2021-09-24T23:04:51,446         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:51,446     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:04:51,446         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:04:52,549   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mol.cpp -o build/temp.linux-armv7l-3.9/python/mol.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:05:40,316   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:05:40,316                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:40,317                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:40,317                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:40,317                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:40,317                    from python/mol.cpp:3:
2021-09-24T23:05:40,317   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:05:40,317   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:05:40,317     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:05:40,317         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:40,360   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:05:40,360   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:05:40,401   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:05:40,401   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:05:40,440   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)’:
2021-09-24T23:05:40,441   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:05:40,441     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:05:40,441         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:40,441   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:05:40,442     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:05:40,442         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:41,073   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T23:05:41,073   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T23:05:41,073     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:05:41,073         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:41,105   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:05:41,106                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:41,106                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:41,106                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:41,106                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:41,106                    from python/mol.cpp:3:
2021-09-24T23:05:41,106   /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_child(P&, int) [with P = gemmi::Residue]’:
2021-09-24T23:05:41,106   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:41,107    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:05:41,107         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:41,175   /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::remove_alternative_conformations(T&) [with T = gemmi::Chain]’:
2021-09-24T23:05:41,176   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:41,176    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:05:41,176         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:43,851   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:05:43,852                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:43,852                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:43,852                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:43,852                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:43,852                    from python/mol.cpp:3:
2021-09-24T23:05:43,852   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’:
2021-09-24T23:05:43,852   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:05:43,853     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:05:43,853         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,332   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:05:44,332                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:44,333                    from python/mol.cpp:3:
2021-09-24T23:05:44,333   /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::remove_hydrogens<gemmi::Residue>::<lambda(const gemmi::Atom&)> >]’:
2021-09-24T23:05:44,333   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,333     833 |     __remove_if(_ForwardIterator __first, _ForwardIterator __last,
2021-09-24T23:05:44,333         |     ^~~~~~~~~~~
2021-09-24T23:05:44,333   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,333   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,401   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:05:44,401                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:44,401                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:44,401                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:44,401                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:44,401                    from python/mol.cpp:3:
2021-09-24T23:05:44,401   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T23:05:44,402   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T23:05:44,402     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:05:44,402         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,402   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T23:05:44,442   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:05:44,442                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:44,442                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:44,443                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:44,443                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:44,443                    from python/mol.cpp:3:
2021-09-24T23:05:44,443   /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_children(P&, pybind11::slice) [with P = gemmi::Residue]’:
2021-09-24T23:05:44,443   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,443    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:05:44,443         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,443   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,444    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:05:44,444         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,511   /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::vector_remove_if(std::vector<T>&, F&&) [with T = gemmi::Atom; F = gemmi::trim_to_alanine(gemmi::Residue&)::<lambda(const gemmi::Atom&)>]’:
2021-09-24T23:05:44,511   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,511    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:05:44,511         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,661   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:05:44,661                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:44,662                    from python/mol.cpp:3:
2021-09-24T23:05:44,662   /usr/include/c++/10/bits/stl_algo.h: In function ‘void gemmi::remove_hydrogens(T&) [with T = gemmi::Residue]’:
2021-09-24T23:05:44,662   /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,662     914 |       return std::__remove_if(__first, __last,
2021-09-24T23:05:44,662         |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,662     915 |          __gnu_cxx::__ops::__pred_iter(__pred));
2021-09-24T23:05:44,662         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,662   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:05:44,663                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:44,663                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:44,663                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:44,663                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:44,663                    from python/mol.cpp:3:
2021-09-24T23:05:44,663   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,663    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:05:44,663         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,677   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:05:44,677                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:44,677                    from python/mol.cpp:3:
2021-09-24T23:05:44,677   /usr/include/c++/10/bits/stl_algo.h: In function ‘void gemmi::remove_hydrogens(T&) [with T = gemmi::Structure]’:
2021-09-24T23:05:44,677   /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,677     914 |       return std::__remove_if(__first, __last,
2021-09-24T23:05:44,678         |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,678     915 |          __gnu_cxx::__ops::__pred_iter(__pred));
2021-09-24T23:05:44,678         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:44,678   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:05:44,678                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:44,678                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:44,678                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:44,678                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:44,678                    from python/mol.cpp:3:
2021-09-24T23:05:44,679   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:05:44,679    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:05:44,679         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:45,683   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:05:45,684                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:45,684                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:45,684                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:45,684                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:45,684                    from python/mol.cpp:3:
2021-09-24T23:05:45,684   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:05:45,684   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-09-24T23:05:45,684     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:05:45,684         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:05:49,182   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:05:49,182                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:49,183                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:49,183                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:49,183                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:49,183                    from python/mol.cpp:3:
2021-09-24T23:05:49,183   /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::expand_ncs(gemmi::Structure&, gemmi::HowToNameCopiedChain)’:
2021-09-24T23:05:49,183   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:05:49,183    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:05:49,183         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:05:51,558   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:05:51,558                    from /usr/include/c++/10/functional:62,
2021-09-24T23:05:51,558                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:05:51,558                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:05:51,558                    from include/gemmi/model.hpp:8,
2021-09-24T23:05:51,559                    from python/mol.cpp:3:
2021-09-24T23:05:51,559   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’:
2021-09-24T23:05:51,559   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:05:51,559      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:05:51,559         |         ^~~~~~~~~~~~~
2021-09-24T23:05:51,559   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:05:53,034   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T23:05:53,034   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T23:05:53,034   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T23:06:00,165   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::class_<type_, options>::def_readwrite<gemmi::Structure, std::vector<gemmi::Connection>, {}>::<lambda(pybind11::class_<gemmi::Structure>::type&, const std::vector<gemmi::Connection>&)>, void, {gemmi::Structure&, const std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&}, {pybind11::is_method}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:06:00,165   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:06:00,166     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:00,166         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:00,166     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:00,166         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:00,166     149 |            && __assignable>::
2021-09-24T23:06:00,166         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:00,166     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:00,166         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:10,262   In file included from python/common.h:3,
2021-09-24T23:06:10,263                    from python/mol.cpp:9:
2021-09-24T23:06:10,263   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >; Sentinel = __gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >; ValueType = const gemmi::Atom&; Extra = {}]’:
2021-09-24T23:06:10,263   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,263    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:06:10,263         |          ^~~~~~~~~~~~~
2021-09-24T23:06:10,263   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,264   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,320   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_mol(pybind11::module&)::<lambda(const gemmi::Residue&)>, pybind11::iterator, {const gemmi::Residue&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:06:10,320   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1989:78: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,320    1989 |     return make_iterator<Policy>(std::begin(value), std::end(value), extra...);
2021-09-24T23:06:10,320         |                                                                              ^
2021-09-24T23:06:10,828   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >; Sentinel = gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’:
2021-09-24T23:06:10,829   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,829    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:06:10,829         |          ^~~~~~~~~~~~~
2021-09-24T23:06:10,829   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,829   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,829   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,890   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_mol(pybind11::module&)::<lambda(gemmi::UniqProxy<gemmi::Atom>&)>, pybind11::iterator, {gemmi::UniqProxy<gemmi::Atom, std::vector<gemmi::Atom, std::allocator<gemmi::Atom> > >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:06:10,890   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1989:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,890    1989 |     return make_iterator<Policy>(std::begin(value), std::end(value), extra...);
2021-09-24T23:06:10,890         |                                                                              ^
2021-09-24T23:06:10,890   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1989:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:10,891   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1989:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:17,771   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:06:17,771                    from /usr/include/c++/10/functional:62,
2021-09-24T23:06:17,771                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:06:17,772                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:06:17,772                    from include/gemmi/model.hpp:8,
2021-09-24T23:06:17,772                    from python/mol.cpp:3:
2021-09-24T23:06:17,772   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T23:06:17,772   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T23:06:17,772     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:06:17,772         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:17,773   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T23:06:17,861   /usr/include/c++/10/bits/vector.tcc: In function ‘C& add_child(P&, C, int) [with P = gemmi::Residue; C = gemmi::Atom]’:
2021-09-24T23:06:17,861   /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:17,861     356 |  _M_realloc_insert(begin() + __n, std::move(__v));
2021-09-24T23:06:17,861         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,234   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:06:19,234                    from /usr/include/c++/10/functional:62,
2021-09-24T23:06:19,234                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:06:19,235                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:06:19,235                    from include/gemmi/model.hpp:8,
2021-09-24T23:06:19,235                    from python/mol.cpp:3:
2021-09-24T23:06:19,235   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_mol(pybind11::module&)::<lambda(gemmi::Residue&, const string&, char, gemmi::Element)>, void, {gemmi::Residue&, const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, char, gemmi::Element}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, pybind11::arg_v}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:06:19,235   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:06:19,235    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:06:19,235         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,694   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:06:19,694                    from /usr/include/c++/10/functional:62,
2021-09-24T23:06:19,694                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:06:19,694                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:06:19,694                    from include/gemmi/model.hpp:8,
2021-09-24T23:06:19,695                    from python/mol.cpp:3:
2021-09-24T23:06:19,695   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’:
2021-09-24T23:06:19,695   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:06:19,695      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:06:19,695         |         ^~~~~~~~~~~~~
2021-09-24T23:06:19,695   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:06:19,754   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static void* pybind11::detail::type_caster_base<type>::make_copy_constructor<std::vector<gemmi::Assembly>, void>::<lambda(const void*)>::_FUN(const void*)’:
2021-09-24T23:06:19,754   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:06:19,754     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:19,754         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,754     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:19,754         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,755     149 |            && __assignable>::
2021-09-24T23:06:19,755         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,755     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:19,755         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,800   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’:
2021-09-24T23:06:19,801   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T23:06:19,801      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:06:19,801         |         ^~~~~~~~~~~~~
2021-09-24T23:06:19,801   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T23:06:19,929   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _ForwardIterator = gemmi::RefinementInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T23:06:19,929   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:06:19,930   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:06:19,931   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T23:06:19,931     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:19,931         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,932     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:19,932         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,932     149 |            && __assignable>::
2021-09-24T23:06:19,932         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:19,932     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:19,932         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:20,710   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::class_<type_, options>::def_readwrite<gemmi::Structure, std::vector<gemmi::Assembly>, {}>::<lambda(pybind11::class_<gemmi::Structure>::type&, const std::vector<gemmi::Assembly>&)>, void, {gemmi::Structure&, const std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&}, {pybind11::is_method}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:06:20,710   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:06:20,710     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:20,710         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:20,710     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:20,711         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:20,711     149 |            && __assignable>::
2021-09-24T23:06:20,711         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:20,711     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:20,711         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:20,916   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T23:06:20,916   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T23:06:20,916      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:06:20,916         |         ^~~~~~~~~~~~~
2021-09-24T23:06:20,917   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T23:06:21,010   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’:
2021-09-24T23:06:21,010   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T23:06:21,010     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:21,010         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,010     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:21,010         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,010     149 |            && __assignable>::
2021-09-24T23:06:21,011         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,011     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:21,011         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,011   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T23:06:21,012     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:21,012         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,012     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:21,012         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,012     149 |            && __assignable>::
2021-09-24T23:06:21,012         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,012     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:21,012         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,013   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:06:21,013     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:21,013         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,013     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:21,013         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,014     149 |            && __assignable>::
2021-09-24T23:06:21,014         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,014     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:21,014         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,139   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’:
2021-09-24T23:06:21,139   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:06:21,139     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:06:21,139         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,140     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:06:21,140         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,140     149 |            && __assignable>::
2021-09-24T23:06:21,140         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:21,140     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:06:21,140         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:06:22,330   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/monlib.cpp -o build/temp.linux-armv7l-3.9/python/monlib.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:07:10,578   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:07:10,578                    from /usr/include/c++/10/string:40,
2021-09-24T23:07:10,578                    from include/gemmi/chemcomp.hpp:9,
2021-09-24T23:07:10,579                    from python/monlib.cpp:3:
2021-09-24T23:07:10,579   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Restraints::get_plane(const string&)::<lambda(const gemmi::Restraints::Plane&)> >]’:
2021-09-24T23:07:10,579   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:10,579    1921 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
2021-09-24T23:07:10,579         |     ^~~~~~~~~
2021-09-24T23:07:10,579   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:12,100   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Restraints::find_bond<gemmi::Restraints::AtomId>::<lambda(const gemmi::Restraints::Bond&)> >]’:
2021-09-24T23:07:12,101   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:12,101   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:12,262   /usr/include/c++/10/bits/stl_algobase.h: In member function ‘const gemmi::Restraints::Bond& gemmi::Restraints::get_bond(const gemmi::Restraints::AtomId&, const gemmi::Restraints::AtomId&) const’:
2021-09-24T23:07:12,262   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:12,262    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:12,262         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:12,262    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:12,262         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,865   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Restraints::find_angle<gemmi::Restraints::AtomId>::<lambda(const gemmi::Restraints::Angle&)> >]’:
2021-09-24T23:07:14,865   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:14,865    1921 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
2021-09-24T23:07:14,865         |     ^~~~~~~~~
2021-09-24T23:07:14,866   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:14,924   /usr/include/c++/10/bits/stl_algobase.h: In member function ‘double gemmi::Restraints::chiral_abs_volume(const gemmi::Restraints::Chirality&) const’:
2021-09-24T23:07:14,924   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:14,924    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:14,924         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,924    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:14,924         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,925   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:14,925    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:14,925         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,925    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:14,925         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,925   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:14,926    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:14,926         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,926    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:14,926         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,926   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:14,926    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:14,926         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,926    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:14,927         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,927   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:14,927    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:14,927         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,927    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:14,927         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,927   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:14,927    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:14,928         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:14,928    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:14,928         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:16,096   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:16,096                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:16,096                    from python/monlib.cpp:3:
2021-09-24T23:07:16,096   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:07:16,096   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:07:16,096     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:16,097         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:16,173   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:07:16,174   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:07:16,272   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:07:16,272   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,083   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:07:19,083   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,083     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:19,083         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:19,129   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:07:19,130   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:19,130     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:19,130         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:19,167   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:07:19,167   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,167     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:19,168         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:19,168   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,223   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:07:19,223   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,223   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,289   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:07:19,289   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,289   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-09-24T23:07:19,578   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:19,579                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:19,579                    from python/monlib.cpp:3:
2021-09-24T23:07:19,579   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::ChemComp::remove_nonmatching_restraints()’:
2021-09-24T23:07:19,579   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:19,579    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:07:19,579         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:19,580   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:19,580    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:07:19,581         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:19,581   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:19,581    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:07:19,581         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:20,045   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:20,046                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:20,046                    from python/monlib.cpp:3:
2021-09-24T23:07:20,046   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:07:20,046   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:07:20,046     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:20,046         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:20,105   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:07:20,105   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:20,105     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:20,105         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:20,171   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:07:20,171   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:07:20,171     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:20,171         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:20,239   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:07:20,239   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:20,239     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:20,239         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:20,312   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Torsion}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:07:20,312   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-09-24T23:07:20,312     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:20,312         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:22,429   /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::Restraints gemmi::read_restraint_modifications(const gemmi::cif::Block&)’:
2021-09-24T23:07:22,429   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:22,429     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:22,429         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:22,431   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:07:22,431                    from /usr/include/c++/10/string:40,
2021-09-24T23:07:22,431                    from include/gemmi/chemcomp.hpp:9,
2021-09-24T23:07:22,431                    from python/monlib.cpp:3:
2021-09-24T23:07:22,431   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:22,431    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:22,432         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:22,432    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:22,432         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:22,827   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:22,828                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:22,828                    from python/monlib.cpp:3:
2021-09-24T23:07:22,828   /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::Restraints gemmi::read_link_restraints(const gemmi::cif::Block&)’:
2021-09-24T23:07:22,828   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:22,828     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:22,828         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:22,829   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:07:22,829                    from /usr/include/c++/10/string:40,
2021-09-24T23:07:22,830                    from include/gemmi/chemcomp.hpp:9,
2021-09-24T23:07:22,830                    from python/monlib.cpp:3:
2021-09-24T23:07:22,830   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:22,830    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:22,830         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:22,830    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:22,830         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:23,256   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:23,256                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:23,256                    from python/monlib.cpp:3:
2021-09-24T23:07:23,256   /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::ChemComp gemmi::make_chemcomp_from_block(const gemmi::cif::Block&)’:
2021-09-24T23:07:23,256   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:23,256     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:23,257         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:23,257   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:07:23,257                    from /usr/include/c++/10/string:40,
2021-09-24T23:07:23,257                    from include/gemmi/chemcomp.hpp:9,
2021-09-24T23:07:23,258                    from python/monlib.cpp:3:
2021-09-24T23:07:23,258   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:23,258    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:07:23,258         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:23,258    1975 |          std::__iterator_category(__first));
2021-09-24T23:07:23,258         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:23,914   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:23,914                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:23,914                    from python/monlib.cpp:3:
2021-09-24T23:07:23,915   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Bond&}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:07:23,915   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:07:23,915     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:23,915         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,197   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:07:24,197   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:24,197     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:24,198         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,199   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:24,199     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:07:24,199         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,310   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Angle&}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:07:24,310   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:07:24,311     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:24,311         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,418   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:07:24,418   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:24,419     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:24,419         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,420   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:24,420     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:07:24,420         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,531   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Torsion&}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:07:24,532   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-09-24T23:07:24,532     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:24,532         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,630   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:07:24,630   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:24,630     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:24,631         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:24,631   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:24,632     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:07:24,632         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:25,409   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Plane&}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:07:25,409   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::iterator’ changed in GCC 7.1
2021-09-24T23:07:25,409     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:07:25,409         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:25,483   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:07:25,483   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:25,484     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:25,484         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:25,485   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:25,485     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:07:25,486         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:25,564   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:07:25,564   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::iterator’ changed in GCC 7.1
2021-09-24T23:07:25,564     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:25,564         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:25,564   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::iterator’ changed in GCC 7.1
2021-09-24T23:07:25,626   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:07:25,627   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::iterator’ changed in GCC 7.1
2021-09-24T23:07:25,627     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:07:25,627         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:32,278   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:32,278                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:32,278                    from python/monlib.cpp:3:
2021-09-24T23:07:32,278   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, pybind11::slice)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:32,279   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:32,279    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:32,279         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:32,392   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, const T&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:32,392   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:32,392    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:32,392         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:32,426   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&, pybind11::slice)>, void, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:32,426   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:32,426    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:32,426         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:32,536   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&, const T&)>, void, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, const gemmi::Restraints::Angle&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:32,536   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:32,536    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:32,536         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:32,574   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&, pybind11::slice)>, void, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:32,574   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:32,575    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:32,575         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:32,690   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&, const T&)>, void, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, const gemmi::Restraints::Torsion&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:32,690   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:32,690    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:32,690         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:32,900   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&, pybind11::slice)>, void, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:32,900   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:32,900    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:32,900         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:33,008   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&, const T&)>, void, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, const gemmi::Restraints::Plane&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:33,009   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:33,009    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:33,009         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:33,989   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:33,990                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:33,990                    from python/monlib.cpp:3:
2021-09-24T23:07:33,990   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:33,990   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:33,990     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:33,990         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:33,991   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:33,991                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:33,991                    from python/monlib.cpp:3:
2021-09-24T23:07:33,991   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:33,992    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:07:33,992         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:34,168   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:34,168                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:34,168                    from python/monlib.cpp:3:
2021-09-24T23:07:34,168   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:34,168   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:34,168     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:34,169         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:34,169   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:34,170                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:34,170                    from python/monlib.cpp:3:
2021-09-24T23:07:34,170   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:34,170    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:07:34,170         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:34,363   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:34,363                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:34,363                    from python/monlib.cpp:3:
2021-09-24T23:07:34,363   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:34,363   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:34,363     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:34,363         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:34,364   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:34,365                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:34,365                    from python/monlib.cpp:3:
2021-09-24T23:07:34,365   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:34,365    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:07:34,365         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:34,786   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:34,787                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:34,787                    from python/monlib.cpp:3:
2021-09-24T23:07:34,787   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:34,787   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:34,787     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:34,787         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:34,788   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:34,788                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:34,789                    from python/monlib.cpp:3:
2021-09-24T23:07:34,789   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:34,789    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:07:34,789         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:36,857   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:07:36,858                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:36,858                    from python/monlib.cpp:3:
2021-09-24T23:07:36,858   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:36,858   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:36,858     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:36,858         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:37,038   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:37,038   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:37,038     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:37,039         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:37,134   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:37,135   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:37,135     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:37,135         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:37,328   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:37,328   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:37,328     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:07:37,329         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:37,777   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:37,777                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:37,777                    from python/monlib.cpp:3:
2021-09-24T23:07:37,777   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(const std::vector<gemmi::Restraints::Bond>&, pybind11::slice)>, std::vector<gemmi::Restraints::Bond>*, {const std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:37,777   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:37,778    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:37,778         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:37,889   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(const std::vector<gemmi::Restraints::Angle>&, pybind11::slice)>, std::vector<gemmi::Restraints::Angle>*, {const std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:37,890   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:37,890    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:37,890         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:37,996   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(const std::vector<gemmi::Restraints::Torsion>&, pybind11::slice)>, std::vector<gemmi::Restraints::Torsion>*, {const std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:37,996   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:37,997    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:37,997         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:38,212   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(const std::vector<gemmi::Restraints::Plane>&, pybind11::slice)>, std::vector<gemmi::Restraints::Plane>*, {const std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:38,212   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:38,212    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:07:38,212         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:07:43,378   In file included from python/common.h:3,
2021-09-24T23:07:43,378                    from python/monlib.cpp:8:
2021-09-24T23:07:43,378   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; ValueType = gemmi::Restraints::Plane&; Extra = {}]’:
2021-09-24T23:07:43,378   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:43,378    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:07:43,378         |          ^~~~~~~~~~~~~
2021-09-24T23:07:43,379   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:43,434   In file included from python/monlib.cpp:10:
2021-09-24T23:07:43,434   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&)>, pybind11::iterator, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:43,435   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:43,435     318 |                    v.begin(), v.end());
2021-09-24T23:07:43,435         |                                      ^
2021-09-24T23:07:43,547   In file included from python/common.h:3,
2021-09-24T23:07:43,547                    from python/monlib.cpp:8:
2021-09-24T23:07:43,547   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >; ValueType = gemmi::Restraints::Torsion&; Extra = {}]’:
2021-09-24T23:07:43,547   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:43,548    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:07:43,548         |          ^~~~~~~~~~~~~
2021-09-24T23:07:43,548   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:43,603   In file included from python/monlib.cpp:10:
2021-09-24T23:07:43,604   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&)>, pybind11::iterator, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:43,604   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:43,604     318 |                    v.begin(), v.end());
2021-09-24T23:07:43,604         |                                      ^
2021-09-24T23:07:43,633   In file included from python/common.h:3,
2021-09-24T23:07:43,633                    from python/monlib.cpp:8:
2021-09-24T23:07:43,633   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >; ValueType = gemmi::Restraints::Angle&; Extra = {}]’:
2021-09-24T23:07:43,634   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:43,634    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:07:43,634         |          ^~~~~~~~~~~~~
2021-09-24T23:07:43,634   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:43,689   In file included from python/monlib.cpp:10:
2021-09-24T23:07:43,690   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&)>, pybind11::iterator, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:43,690   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:43,690     318 |                    v.begin(), v.end());
2021-09-24T23:07:43,690         |                                      ^
2021-09-24T23:07:43,719   In file included from python/common.h:3,
2021-09-24T23:07:43,719                    from python/monlib.cpp:8:
2021-09-24T23:07:43,720   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; ValueType = gemmi::Restraints::Bond&; Extra = {}]’:
2021-09-24T23:07:43,720   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:43,720    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:07:43,720         |          ^~~~~~~~~~~~~
2021-09-24T23:07:43,720   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:43,776   In file included from python/monlib.cpp:10:
2021-09-24T23:07:43,776   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&)>, pybind11::iterator, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:43,777   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:43,777     318 |                    v.begin(), v.end());
2021-09-24T23:07:43,777         |                                      ^
2021-09-24T23:07:57,064   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:57,064                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:57,064                    from python/monlib.cpp:3:
2021-09-24T23:07:57,064   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&, DiffType)>, gemmi::Restraints::Plane, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,064   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:57,064    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,064         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,121   In file included from python/monlib.cpp:10:
2021-09-24T23:07:57,121   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&, DiffType, const T&)>, void, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, int, const gemmi::Restraints::Plane&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,122   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:57,122     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:07:57,122         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,248   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:57,248                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:57,248                    from python/monlib.cpp:3:
2021-09-24T23:07:57,248   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&, DiffType)>, gemmi::Restraints::Torsion, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,248   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:57,248    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,249         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,291   In file included from python/monlib.cpp:10:
2021-09-24T23:07:57,292   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&, DiffType, const T&)>, void, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, int, const gemmi::Restraints::Torsion&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,292   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:57,292     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:07:57,292         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,334   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:57,335                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:57,335                    from python/monlib.cpp:3:
2021-09-24T23:07:57,335   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&, DiffType)>, gemmi::Restraints::Angle, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,335   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:57,335    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,335         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,376   In file included from python/monlib.cpp:10:
2021-09-24T23:07:57,377   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&, DiffType, const T&)>, void, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, int, const gemmi::Restraints::Angle&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,377   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:57,377     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:07:57,377         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,417   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:57,417                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:57,417                    from python/monlib.cpp:3:
2021-09-24T23:07:57,417   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, DiffType)>, gemmi::Restraints::Bond, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,418   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:57,418    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,418         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,463   In file included from python/monlib.cpp:10:
2021-09-24T23:07:57,463   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, DiffType, const T&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, int, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,463   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::const_iterator’ changed in GCC 7.1
2021-09-24T23:07:57,463     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:07:57,463         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,639   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:07:57,640                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:57,640                    from python/monlib.cpp:3:
2021-09-24T23:07:57,640   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, DiffType)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,640   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:57,640    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,640         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,674   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&, DiffType)>, void, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,674   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:57,674    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,674         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,707   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&, DiffType)>, void, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,707   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:57,707    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,707         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:57,741   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&, DiffType)>, void, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:57,741   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:57,741    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:07:57,742         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,740   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:07:58,740                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:07:58,740                    from python/monlib.cpp:3:
2021-09-24T23:07:58,740   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; _ForwardIterator = gemmi::Restraints::Bond*; bool _TrivialValueTypes = false]’:
2021-09-24T23:07:58,740   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:58,740      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:07:58,740         |         ^~~~~~~~~~~~~
2021-09-24T23:07:58,741   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:58,809   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, const std::vector<gemmi::Restraints::Bond>&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, const std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:58,809   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:58,809     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:58,809         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,810     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:58,810         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,810     149 |            && __assignable>::
2021-09-24T23:07:58,810         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,810     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:58,810         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,811   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:58,811     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:58,811         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,811     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:58,811         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,812     149 |            && __assignable>::
2021-09-24T23:07:58,812         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,812     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:58,812         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,906   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:07:58,907   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:07:58,907     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:58,907         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,907     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:58,907         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,907     149 |            && __assignable>::
2021-09-24T23:07:58,907         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:58,908     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:58,908         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,012   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >; _ForwardIterator = gemmi::Restraints::Angle*; bool _TrivialValueTypes = false]’:
2021-09-24T23:07:59,012   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:59,013      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:07:59,013         |         ^~~~~~~~~~~~~
2021-09-24T23:07:59,013   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:59,095   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Angle>, pybind11::class_<std::vector<gemmi::Restraints::Angle>, std::unique_ptr<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >, std::default_delete<std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> > > > > >::<lambda(std::vector<gemmi::Restraints::Angle>&, const std::vector<gemmi::Restraints::Angle>&)>, void, {std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&, const std::vector<gemmi::Restraints::Angle, std::allocator<gemmi::Restraints::Angle> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:59,095   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:59,095     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,095         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,096     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,096         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,096     149 |            && __assignable>::
2021-09-24T23:07:59,096         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,096     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,096         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,096   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:59,097     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,097         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,097     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,097         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,097     149 |            && __assignable>::
2021-09-24T23:07:59,097         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,097     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,098         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,198   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:07:59,199   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:07:59,199     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,199         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,199     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,199         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,199     149 |            && __assignable>::
2021-09-24T23:07:59,200         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,200     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,200         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,312   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >; _ForwardIterator = gemmi::Restraints::Torsion*; bool _TrivialValueTypes = false]’:
2021-09-24T23:07:59,313   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:59,313      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:07:59,313         |         ^~~~~~~~~~~~~
2021-09-24T23:07:59,313   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:59,403   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Torsion>, pybind11::class_<std::vector<gemmi::Restraints::Torsion>, std::unique_ptr<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >, std::default_delete<std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> > > > > >::<lambda(std::vector<gemmi::Restraints::Torsion>&, const std::vector<gemmi::Restraints::Torsion>&)>, void, {std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&, const std::vector<gemmi::Restraints::Torsion, std::allocator<gemmi::Restraints::Torsion> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:59,403   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:59,404     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,404         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,404     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,404         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,404     149 |            && __assignable>::
2021-09-24T23:07:59,404         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,404     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,405         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,405   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:59,405     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,405         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,405     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,405         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,405     149 |            && __assignable>::
2021-09-24T23:07:59,405         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,406     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,406         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,490   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:07:59,490   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:07:59,490     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,490         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,491     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,491         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,491     149 |            && __assignable>::
2021-09-24T23:07:59,491         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,491     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,491         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,855   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’:
2021-09-24T23:07:59,856   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:59,856      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:07:59,856         |         ^~~~~~~~~~~~~
2021-09-24T23:07:59,856   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:59,946   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Plane>, pybind11::class_<std::vector<gemmi::Restraints::Plane>, std::unique_ptr<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >, std::default_delete<std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> > > > > >::<lambda(std::vector<gemmi::Restraints::Plane>&, const std::vector<gemmi::Restraints::Plane>&)>, void, {std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&, const std::vector<gemmi::Restraints::Plane, std::allocator<gemmi::Restraints::Plane> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:07:59,947   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:59,947     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,947         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,947     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,947         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,947     149 |            && __assignable>::
2021-09-24T23:07:59,948         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,948     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,948         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,948   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:07:59,948     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:07:59,948         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,948     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:07:59,948         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,949     149 |            && __assignable>::
2021-09-24T23:07:59,949         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:07:59,949     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:07:59,949         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:00,061   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:08:00,061   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:08:00,061     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:08:00,061         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:00,062     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:08:00,062         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:00,062     149 |            && __assignable>::
2021-09-24T23:08:00,062         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:00,062     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:08:00,062         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:02,886   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mtz.cpp -o build/temp.linux-armv7l-3.9/python/mtz.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:08:46,162   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:08:46,162                    from /usr/include/c++/10/functional:62,
2021-09-24T23:08:46,162                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:08:46,162                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:08:46,162                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:08:46,162                    from python/mtz.cpp:3:
2021-09-24T23:08:46,163   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:08:46,163   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:08:46,163     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:08:46,163         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:49,397   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’:
2021-09-24T23:08:49,397   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:08:49,397     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:08:49,398         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:49,794   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:08:49,794   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:08:49,794     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:08:49,794         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:49,863   /usr/include/c++/10/bits/vector.tcc: In member function ‘gemmi::UnitCell gemmi::UnitCell::changed_basis_backward(const gemmi::Op&, bool)’:
2021-09-24T23:08:49,863   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:08:49,863     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:08:49,863         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:50,019   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:50,020   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:08:50,020     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:08:50,020         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:50,112   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:50,112   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:08:50,112     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:08:50,112         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:52,702   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Mtz::Dataset&}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:52,702   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:08:52,702     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:08:52,702         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:52,849   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:52,849   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::const_iterator’ changed in GCC 7.1
2021-09-24T23:08:52,849     130 |     vector<_Tp, _Alloc>::
2021-09-24T23:08:52,849         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:52,851   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:08:52,852     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-09-24T23:08:52,852         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:52,971   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:52,971   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:08:52,971     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:08:52,971         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:52,971   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:08:53,083   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:53,083   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:08:53,083     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:08:53,083         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:54,311   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:54,311   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:08:54,311     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:08:54,311         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:54,311   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-09-24T23:08:54,398   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-09-24T23:08:54,398   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:08:54,399     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:08:54,399         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:08:59,985   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:08:59,985                    from /usr/include/c++/10/functional:62,
2021-09-24T23:08:59,985                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:08:59,985                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:08:59,985                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:08:59,985                    from python/mtz.cpp:3:
2021-09-24T23:08:59,985   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, pybind11::slice)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:08:59,986   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:08:59,986    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:08:59,986         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:00,119   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, const T&)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:00,119   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:00,119    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:09:00,119         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:09:01,439   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:09:01,440                    from /usr/include/c++/10/functional:62,
2021-09-24T23:09:01,440                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:09:01,440                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:09:01,440                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:09:01,440                    from python/mtz.cpp:3:
2021-09-24T23:09:01,440   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, const pybind11::iterable&)>’:
2021-09-24T23:09:01,440   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:01,440     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:09:01,441         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:01,441   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:09:01,442                    from /usr/include/c++/10/functional:62,
2021-09-24T23:09:01,442                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:09:01,442                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:09:01,442                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:09:01,442                    from python/mtz.cpp:3:
2021-09-24T23:09:01,442   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:01,442    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:09:01,442         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:03,306   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:09:03,306                    from /usr/include/c++/10/functional:62,
2021-09-24T23:09:03,306                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:09:03,306                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:09:03,306                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:09:03,307                    from python/mtz.cpp:3:
2021-09-24T23:09:03,307   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(const pybind11::iterable&)>’:
2021-09-24T23:09:03,307   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:03,307     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:09:03,307         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:03,882   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:09:03,882                    from /usr/include/c++/10/functional:62,
2021-09-24T23:09:03,882                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:09:03,883                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:09:03,883                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:09:03,883                    from python/mtz.cpp:3:
2021-09-24T23:09:03,883   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(const std::vector<gemmi::Mtz::Dataset>&, pybind11::slice)>, std::vector<gemmi::Mtz::Dataset>*, {const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:03,883   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:03,883    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:09:03,883         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:09:07,891   In file included from python/common.h:3,
2021-09-24T23:09:07,892                    from python/mtz.cpp:9:
2021-09-24T23:09:07,892   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >; ValueType = gemmi::Mtz::Dataset&; Extra = {}]’:
2021-09-24T23:09:07,892   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:07,892    1932 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-09-24T23:09:07,892         |          ^~~~~~~~~~~~~
2021-09-24T23:09:07,892   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1932:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:07,973   In file included from python/mtz.cpp:11:
2021-09-24T23:09:07,973   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&)>, pybind11::iterator, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:07,973   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:07,973     318 |                    v.begin(), v.end());
2021-09-24T23:09:07,974         |                                      ^
2021-09-24T23:09:15,932   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:09:15,932                    from /usr/include/c++/10/functional:62,
2021-09-24T23:09:15,932                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:09:15,932                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:09:15,932                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:09:15,932                    from python/mtz.cpp:3:
2021-09-24T23:09:15,933   /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, DiffType)>, gemmi::Mtz::Dataset, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>’:
2021-09-24T23:09:15,933   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:15,933    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:09:15,933         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:15,977   In file included from python/mtz.cpp:11:
2021-09-24T23:09:15,978   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, DiffType, const T&)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, int, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:15,978   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::const_iterator’ changed in GCC 7.1
2021-09-24T23:09:15,978     184 |             v.insert(v.begin() + i, x);
2021-09-24T23:09:15,978         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-09-24T23:09:16,313   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:09:16,313                    from /usr/include/c++/10/functional:62,
2021-09-24T23:09:16,314                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:09:16,314                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:09:16,314                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:09:16,314                    from python/mtz.cpp:3:
2021-09-24T23:09:16,314   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, DiffType)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:16,314   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:16,314    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:09:16,314         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,518   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:09:18,518                    from /usr/include/c++/10/functional:62,
2021-09-24T23:09:18,518                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:09:18,518                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:09:18,519                    from include/gemmi/mtz.hpp:13,
2021-09-24T23:09:18,519                    from python/mtz.cpp:3:
2021-09-24T23:09:18,519   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >; _ForwardIterator = gemmi::Mtz::Dataset*; bool _TrivialValueTypes = false]’:
2021-09-24T23:09:18,519   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:18,519      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:09:18,519         |         ^~~~~~~~~~~~~
2021-09-24T23:09:18,519   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:18,597   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::constructor<Args>::execute<pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > >, {char [17]}, 0>::<lambda(pybind11::detail::value_and_holder&, const std::vector<gemmi::Mtz::Dataset>&)>, void, {pybind11::detail::value_and_holder&, const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor, char [17]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:18,597   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:18,597     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:09:18,598         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,598     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:09:18,598         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,598     149 |            && __assignable>::
2021-09-24T23:09:18,598         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,598     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:09:18,598         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,654   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, const std::vector<gemmi::Mtz::Dataset>&)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:18,654   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:18,655     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:09:18,655         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,655     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:09:18,655         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,655     149 |            && __assignable>::
2021-09-24T23:09:18,655         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,655     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:09:18,655         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,656   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:18,657     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:09:18,657         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,657     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:09:18,657         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,657     149 |            && __assignable>::
2021-09-24T23:09:18,657         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,657     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:09:18,657         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,762   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::class_<type_, options>::def_readwrite<gemmi::Mtz, std::vector<gemmi::Mtz::Dataset>, {}>::<lambda(pybind11::class_<gemmi::Mtz>::type&, const std::vector<gemmi::Mtz::Dataset>&)>, void, {gemmi::Mtz&, const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::is_method}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:09:18,762   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-09-24T23:09:18,762     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:09:18,762         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,763     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:09:18,763         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,763     149 |            && __assignable>::
2021-09-24T23:09:18,763         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:18,763     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:09:18,763         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:09:31,258   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/read.cpp -o build/temp.linux-armv7l-3.9/python/read.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:10:04,410   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:10:04,410                    from include/gemmi/iterator.hpp:9,
2021-09-24T23:10:04,410                    from include/gemmi/cifdoc.hpp:8,
2021-09-24T23:10:04,410                    from python/read.cpp:4:
2021-09-24T23:10:04,411   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:10:04,411   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:10:04,411     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:04,411         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:04,453   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:10:04,453   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:10:04,493   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:10:04,493   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:10:04,531   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)’:
2021-09-24T23:10:04,532   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:10:04,532     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:04,532         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:04,532   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:10:04,532     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:04,532         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:04,583   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::AtomType&}; _Tp = gemmi::SmallStructure::AtomType; _Alloc = std::allocator<gemmi::SmallStructure::AtomType>]’:
2021-09-24T23:10:04,583   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::AtomType>::iterator’ changed in GCC 7.1
2021-09-24T23:10:04,584     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:04,584         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:05,214   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’:
2021-09-24T23:10:05,214   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::TlsGroup>::iterator’ changed in GCC 7.1
2021-09-24T23:10:05,214   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::TlsGroup>::iterator’ changed in GCC 7.1
2021-09-24T23:10:05,480   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’:
2021-09-24T23:10:05,480   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo>::iterator’ changed in GCC 7.1
2021-09-24T23:10:05,631   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’:
2021-09-24T23:10:05,631   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:10:05,631     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:05,631         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:05,661   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator<gemmi::BasicRefinementInfo>]’:
2021-09-24T23:10:05,661   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::BasicRefinementInfo>::iterator’ changed in GCC 7.1
2021-09-24T23:10:05,661     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:05,661         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:05,750   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
2021-09-24T23:10:05,751   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::CrystalInfo>::iterator’ changed in GCC 7.1
2021-09-24T23:10:05,816   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
2021-09-24T23:10:05,816   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T23:10:05,816     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:05,816         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:05,984   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’:
2021-09-24T23:10:05,985   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::DiffractionInfo>::iterator’ changed in GCC 7.1
2021-09-24T23:10:05,985     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:05,985         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:06,182   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’:
2021-09-24T23:10:06,183   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::DiffractionInfo*, std::vector<gemmi::DiffractionInfo> >’ changed in GCC 7.1
2021-09-24T23:10:06,183     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:06,183         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:06,233   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’:
2021-09-24T23:10:06,233   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::ExperimentInfo>::iterator’ changed in GCC 7.1
2021-09-24T23:10:06,233     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:06,233         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:06,296   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’:
2021-09-24T23:10:06,296   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T23:10:06,296     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:06,297         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:06,318   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator<gemmi::ReflectionsInfo>]’:
2021-09-24T23:10:06,319   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::ReflectionsInfo>::iterator’ changed in GCC 7.1
2021-09-24T23:10:06,319     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:06,319         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:07,046   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:10:07,046   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-09-24T23:10:07,097   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:10:07,097   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:10:07,097     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:07,097         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:07,355   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T23:10:07,356   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T23:10:07,356     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:07,356         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:07,430   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T23:10:07,430   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:10:07,431     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:07,431         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:09,128   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’:
2021-09-24T23:10:09,128   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:10:09,129     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:09,129         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:10,676   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:10:10,677   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-09-24T23:10:10,677     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:10,677         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:10,843   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-09-24T23:10:10,843   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:10:10,844     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:10,844         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:11,347   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-09-24T23:10:11,347   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-09-24T23:10:11,347     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:11,347         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:11,418   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-09-24T23:10:11,418   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:10:11,418     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:11,418         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:11,546   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-09-24T23:10:11,546   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-09-24T23:10:11,546     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:11,546         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:11,585   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-09-24T23:10:11,585   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-09-24T23:10:11,585     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:11,586         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:13,208   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::impl::read_connectivity(gemmi::cif::Block&, gemmi::Structure&)’:
2021-09-24T23:10:13,208   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-09-24T23:10:13,208     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:13,209         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:13,956   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’:
2021-09-24T23:10:13,957   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflectionsInfo*, std::vector<gemmi::ReflectionsInfo> >’ changed in GCC 7.1
2021-09-24T23:10:13,957     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:13,957         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:14,951   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator<gemmi::SmallStructure::Site>]’:
2021-09-24T23:10:14,951   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::Site>::iterator’ changed in GCC 7.1
2021-09-24T23:10:14,951     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:14,951         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:15,215   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:10:15,215                    from include/gemmi/iterator.hpp:9,
2021-09-24T23:10:15,215                    from include/gemmi/cifdoc.hpp:8,
2021-09-24T23:10:15,215                    from python/read.cpp:4:
2021-09-24T23:10:15,215   /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::SmallStructure gemmi::make_small_structure_from_block(const gemmi::cif::Block&)’:
2021-09-24T23:10:15,216   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-09-24T23:10:15,216    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:10:15,216         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:10:15,219   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::AtomType*, std::vector<gemmi::SmallStructure::AtomType> >’ changed in GCC 7.1
2021-09-24T23:10:15,219    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:10:15,220         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:10:18,661   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:10:18,661                    from include/gemmi/iterator.hpp:9,
2021-09-24T23:10:18,662                    from include/gemmi/cifdoc.hpp:8,
2021-09-24T23:10:18,662                    from python/read.cpp:4:
2021-09-24T23:10:18,662   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-09-24T23:10:18,662   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-09-24T23:10:18,662     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:18,662         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:18,871   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:10:18,871                    from include/gemmi/iterator.hpp:9,
2021-09-24T23:10:18,871                    from include/gemmi/cifdoc.hpp:8,
2021-09-24T23:10:18,871                    from python/read.cpp:4:
2021-09-24T23:10:18,871   /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<gemmi::Assembly> gemmi::impl::read_assemblies(gemmi::cif::Block&)’:
2021-09-24T23:10:18,871   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-09-24T23:10:18,872    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:10:18,872         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:10:20,540   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:10:20,540                    from include/gemmi/iterator.hpp:9,
2021-09-24T23:10:20,540                    from include/gemmi/cifdoc.hpp:8,
2021-09-24T23:10:20,540                    from python/read.cpp:4:
2021-09-24T23:10:20,540   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T23:10:20,541   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T23:10:20,541      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:10:20,541         |         ^~~~~~~~~~~~~
2021-09-24T23:10:20,541   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T23:10:20,668   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:10:20,668                    from include/gemmi/iterator.hpp:9,
2021-09-24T23:10:20,668                    from include/gemmi/cifdoc.hpp:8,
2021-09-24T23:10:20,668                    from python/read.cpp:4:
2021-09-24T23:10:20,668   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
2021-09-24T23:10:20,668   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
2021-09-24T23:10:20,669     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:20,669         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:20,745   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::add_restraint_count_weight(gemmi::RefinementInfo&, const char*, const char*)’:
2021-09-24T23:10:20,745   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
2021-09-24T23:10:20,745     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:20,745         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:20,812   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
2021-09-24T23:10:20,813   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
2021-09-24T23:10:20,813     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:10:20,813         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:20,892   /usr/include/c++/10/bits/vector.tcc: In function ‘T& gemmi::impl::find_or_add(std::vector<Value>&, const string&) [with T = gemmi::RefinementInfo::Restr]’:
2021-09-24T23:10:20,892   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
2021-09-24T23:10:20,892     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:20,893         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:21,035   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’:
2021-09-24T23:10:21,035   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T23:10:21,036     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:21,036         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:21,039   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::BasicRefinementInfo*, std::vector<gemmi::BasicRefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:10:21,039     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:10:21,039         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:32,615   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:10:32,615                    from include/gemmi/iterator.hpp:9,
2021-09-24T23:10:32,615                    from include/gemmi/cifdoc.hpp:8,
2021-09-24T23:10:32,615                    from python/read.cpp:4:
2021-09-24T23:10:32,615   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’:
2021-09-24T23:10:32,615   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:10:32,616      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:10:32,616         |         ^~~~~~~~~~~~~
2021-09-24T23:10:32,616   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:10:32,668   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’:
2021-09-24T23:10:32,669   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T23:10:32,669   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T23:10:32,761   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _ForwardIterator = gemmi::RefinementInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T23:10:32,761   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:10:32,761   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:10:32,762   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-09-24T23:10:32,762     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:10:32,763         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:32,763     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:10:32,763         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:32,763     149 |            && __assignable>::
2021-09-24T23:10:32,763         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:32,763     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:10:32,763         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:32,946   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’:
2021-09-24T23:10:32,946   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T23:10:32,947      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:10:32,947         |         ^~~~~~~~~~~~~
2021-09-24T23:10:32,947   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T23:10:33,019   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’:
2021-09-24T23:10:33,020   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-09-24T23:10:33,020     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:10:33,020         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,020     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:10:33,020         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,020     149 |            && __assignable>::
2021-09-24T23:10:33,020         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,021     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:10:33,021         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,021   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-09-24T23:10:33,021     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:10:33,021         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,021     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:10:33,021         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,021     149 |            && __assignable>::
2021-09-24T23:10:33,022         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,022     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:10:33,022         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,022   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:10:33,022     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:10:33,022         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,022     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:10:33,022         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,023     149 |            && __assignable>::
2021-09-24T23:10:33,023         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,023     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:10:33,023         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,198   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’:
2021-09-24T23:10:33,198   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-09-24T23:10:33,198     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:10:33,198         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,199     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:10:33,199         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,199     149 |            && __assignable>::
2021-09-24T23:10:33,199         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:33,199     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:10:33,199         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:10:38,645   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/recgrid.cpp -o build/temp.linux-armv7l-3.9/python/recgrid.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:11:15,239   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:11:15,239                    from /usr/include/c++/10/functional:62,
2021-09-24T23:11:15,240                    from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13,
2021-09-24T23:11:15,240                    from /usr/include/c++/10/algorithm:74,
2021-09-24T23:11:15,240                    from include/gemmi/asudata.hpp:10,
2021-09-24T23:11:15,240                    from include/gemmi/recgrid.hpp:8,
2021-09-24T23:11:15,240                    from python/recgrid.cpp:3:
2021-09-24T23:11:15,240   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:11:15,240   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:11:15,240     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:11:15,241         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:11:17,874   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’:
2021-09-24T23:11:17,874   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:11:17,875     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:11:17,875         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:11:48,764   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/scaling.cpp -o build/temp.linux-armv7l-3.9/python/scaling.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:12:00,565   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:12:00,565                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:12:00,565                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:12:00,566                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:12:00,566                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:12:00,566                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:12:00,566                    from python/common.h:3,
2021-09-24T23:12:00,566                    from python/scaling.cpp:3:
2021-09-24T23:12:00,566   /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]’:
2021-09-24T23:12:00,567   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-09-24T23:12:00,567     721 |       vector<_Tp, _Alloc>::
2021-09-24T23:12:00,567         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:03,277   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Scaling<float>::Point}; _Tp = gemmi::Scaling<float>::Point; _Alloc = std::allocator<gemmi::Scaling<float>::Point>]’:
2021-09-24T23:12:03,277   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Scaling<float>::Point, std::allocator<gemmi::Scaling<float>::Point> >::iterator’ changed in GCC 7.1
2021-09-24T23:12:03,278     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:12:03,278         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:03,347   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Scaling<Real>::prepare_points(const gemmi::AsuData<std::complex<_Tp> >&, const gemmi::AsuData<gemmi::ValueSigma<Real> >&, const gemmi::AsuData<std::complex<_Tp> >&) [with Real = float]’:
2021-09-24T23:12:03,347   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Scaling<float>::Point*, std::vector<gemmi::Scaling<float>::Point, std::allocator<gemmi::Scaling<float>::Point> > >’ changed in GCC 7.1
2021-09-24T23:12:03,348     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:12:03,348         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,738   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-09-24T23:12:09,738   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-09-24T23:12:09,738     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:12:09,739         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,739   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-09-24T23:12:09,772   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:12:09,772                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:12:09,772                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:12:09,773                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:12:09,773                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:12:09,773                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:12:09,773                    from python/common.h:3,
2021-09-24T23:12:09,773                    from python/scaling.cpp:3:
2021-09-24T23:12:09,773   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<double> gemmi::Scaling<Real>::get_parameters() const [with Real = float]’:
2021-09-24T23:12:09,773   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,774    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:12:09,774         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:12:09,774   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,774    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:12:09,774         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:12:09,774   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,774    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:12:09,775         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:12:09,775   /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,775    1313 |  _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
2021-09-24T23:12:09,775         |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,775    1314 |    std::random_access_iterator_tag());
2021-09-24T23:12:09,775         |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,775   /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,776    1313 |  _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
2021-09-24T23:12:09,776         |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,776    1314 |    std::random_access_iterator_tag());
2021-09-24T23:12:09,776         |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,776   /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,776    1313 |  _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
2021-09-24T23:12:09,776         |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,776    1314 |    std::random_access_iterator_tag());
2021-09-24T23:12:09,777         |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,777   /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,777    1313 |  _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
2021-09-24T23:12:09,777         |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,777    1314 |    std::random_access_iterator_tag());
2021-09-24T23:12:09,777         |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,777   /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,777    1313 |  _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
2021-09-24T23:12:09,777         |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,778    1314 |    std::random_access_iterator_tag());
2021-09-24T23:12:09,778         |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,778   /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,778    1313 |  _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
2021-09-24T23:12:09,778         |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,778    1314 |    std::random_access_iterator_tag());
2021-09-24T23:12:09,778         |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,778   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,779    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:12:09,779         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:12:09,912   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:12:09,913                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:12:09,913                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:12:09,913                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:12:09,913                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:12:09,913                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:12:09,913                    from python/common.h:3,
2021-09-24T23:12:09,913                    from python/scaling.cpp:3:
2021-09-24T23:12:09,914   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-09-24T23:12:09,914   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-09-24T23:12:09,914     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:12:09,914         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:09,946   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<double> gemmi::Scaling<Real>::compute_values() const [with Real = float]’:
2021-09-24T23:12:09,947   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:12:09,947     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:12:09,947         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:10,622   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/search.cpp -o build/temp.linux-armv7l-3.9/python/search.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:12:41,996   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:12:41,996                    from include/gemmi/neighbor.hpp:9,
2021-09-24T23:12:41,997                    from python/search.cpp:3:
2021-09-24T23:12:41,997   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Transform&}; _Tp = gemmi::Transform; _Alloc = std::allocator<gemmi::Transform>]’:
2021-09-24T23:12:41,997   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Transform>::iterator’ changed in GCC 7.1
2021-09-24T23:12:41,997     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:12:41,997         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:42,075   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Fractional&}; _Tp = gemmi::Fractional; _Alloc = std::allocator<gemmi::Fractional>]’:
2021-09-24T23:12:42,075   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Fractional>::iterator’ changed in GCC 7.1
2021-09-24T23:12:42,180   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:12:42,180                    from include/gemmi/neighbor.hpp:9,
2021-09-24T23:12:42,181                    from python/search.cpp:3:
2021-09-24T23:12:42,181   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::add_site(const gemmi::SmallStructure::Site&, int)’:
2021-09-24T23:12:42,181   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Fractional*, std::vector<gemmi::Fractional> >’ changed in GCC 7.1
2021-09-24T23:12:42,181    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:12:42,181         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:12:45,361   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:12:45,362                    from include/gemmi/neighbor.hpp:9,
2021-09-24T23:12:45,362                    from python/search.cpp:3:
2021-09-24T23:12:45,362   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:12:45,362   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:12:45,362     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:12:45,362         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:12:45,362   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:12:46,623   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:12:46,624                    from include/gemmi/neighbor.hpp:9,
2021-09-24T23:12:46,624                    from python/search.cpp:3:
2021-09-24T23:12:46,624   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::initialize(gemmi::Model&, const gemmi::UnitCell&, double)’:
2021-09-24T23:12:46,624   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Transform*, std::vector<gemmi::Transform> >’ changed in GCC 7.1
2021-09-24T23:12:46,624    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:12:46,624         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:12:46,625   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:12:46,625                    from include/gemmi/neighbor.hpp:9,
2021-09-24T23:12:46,626                    from python/search.cpp:3:
2021-09-24T23:12:46,626   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:12:46,626     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:12:46,626         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:01,566   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:13:01,567                    from include/gemmi/neighbor.hpp:9,
2021-09-24T23:13:01,567                    from python/search.cpp:3:
2021-09-24T23:13:01,567   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’:
2021-09-24T23:13:01,567   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:13:01,567      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:13:01,567         |         ^~~~~~~~~~~~~
2021-09-24T23:13:01,568   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:13:01,789   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’:
2021-09-24T23:13:01,789   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:13:01,790     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:13:01,790         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:01,790     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:13:01,790         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:01,790     149 |            && __assignable>::
2021-09-24T23:13:01,790         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:01,791     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:13:01,791         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:02,716   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sf.cpp -o build/temp.linux-armv7l-3.9/python/sf.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:13:12,783   In file included from include/gemmi/it92.hpp:16,
2021-09-24T23:13:12,784                    from python/sf.cpp:6:
2021-09-24T23:13:12,784   include/gemmi/formfact.hpp: In instantiation of ‘std::pair<_ForwardIterator, _ForwardIterator> gemmi::ExpSum<N, Real>::calculate_with_derivative(Real) const [with int N = 5; Real = double]’:
2021-09-24T23:13:12,784   include/gemmi/dencalc.hpp:19:54:   required from ‘double gemmi::determine_cutoff_radius(double, const PrecalExpSum&, double) [with PrecalExpSum = gemmi::ExpSum<5, double>]’
2021-09-24T23:13:12,784   include/gemmi/dencalc.hpp:121:35:   required from ‘double gemmi::DensityCalculator<Table, Real>::estimate_radius(const gemmi::ExpSum<N, typename Table::Coef::coef_type>&, double) const [with int N = 5; Table = gemmi::IT92<double>; Real = float; typename Table::Coef::coef_type = double]’
2021-09-24T23:13:12,784   python/sf.cpp:62:36:   required from ‘void add_dencalc(pybind11::module&, const char*) [with Table = gemmi::IT92<double>; pybind11::module = pybind11::module_]’
2021-09-24T23:13:12,784   python/sf.cpp:83:44:   required from here
2021-09-24T23:13:12,785   include/gemmi/formfact.hpp:27:24: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
2021-09-24T23:13:12,785      27 |   std::pair<Real,Real> calculate_with_derivative(Real r) const {
2021-09-24T23:13:12,785         |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:35,474   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:13:35,474                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:13:35,475                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:13:35,475                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:13:35,475                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:13:35,475                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:13:35,475                    from python/common.h:3,
2021-09-24T23:13:35,475                    from python/sf.cpp:3:
2021-09-24T23:13:35,476   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2021-09-24T23:13:35,476   /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-09-24T23:13:35,476     509 |     vector<_Tp, _Alloc>::
2021-09-24T23:13:35,476         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:35,542   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:13:35,542                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:183,
2021-09-24T23:13:35,542                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-09-24T23:13:35,542                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-09-24T23:13:35,543                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-09-24T23:13:35,543                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:23,
2021-09-24T23:13:35,543                    from python/common.h:3,
2021-09-24T23:13:35,543                    from python/sf.cpp:3:
2021-09-24T23:13:35,543   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex<double> gemmi::StructureFactorCalculator<Table>::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::C4322<double>]’:
2021-09-24T23:13:35,543   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:13:35,543     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2021-09-24T23:13:35,544         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:35,629   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex<double> gemmi::StructureFactorCalculator<Table>::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::IT92<double>]’:
2021-09-24T23:13:35,629   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:13:35,629     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2021-09-24T23:13:35,630         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:35,703   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex<double> gemmi::StructureFactorCalculator<Table>::calculate_sf_from_small_structure(const gemmi::SmallStructure&, const Miller&) [with Table = gemmi::IT92<double>]’:
2021-09-24T23:13:35,703   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:13:35,703     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2021-09-24T23:13:35,704         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:35,759   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex<double> gemmi::StructureFactorCalculator<Table>::calculate_sf_from_small_structure(const gemmi::SmallStructure&, const Miller&) [with Table = gemmi::C4322<double>]’:
2021-09-24T23:13:35,759   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-09-24T23:13:35,759     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2021-09-24T23:13:35,759         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:13:38,148   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sym.cpp -o build/temp.linux-armv7l-3.9/python/sym.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:14:20,371   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/topo.cpp -o build/temp.linux-armv7l-3.9/python/topo.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:15:07,025   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:15:07,025                    from /usr/include/c++/10/string:40,
2021-09-24T23:15:07,025                    from include/gemmi/chemcomp.hpp:9,
2021-09-24T23:15:07,025                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:07,026                    from python/topo.cpp:3:
2021-09-24T23:15:07,026   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Restraints::get_plane(const string&)::<lambda(const gemmi::Restraints::Plane&)> >]’:
2021-09-24T23:15:07,026   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:07,026    1921 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
2021-09-24T23:15:07,026         |     ^~~~~~~~~
2021-09-24T23:15:07,026   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:07,872   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:15:07,872                    from include/gemmi/util.hpp:8,
2021-09-24T23:15:07,873                    from include/gemmi/cifdoc.hpp:11,
2021-09-24T23:15:07,873                    from include/gemmi/chemcomp.hpp:11,
2021-09-24T23:15:07,873                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:07,873                    from python/topo.cpp:3:
2021-09-24T23:15:07,873   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, bool)::<lambda(const gemmi::Atom&, const gemmi::Atom&)> >]’:
2021-09-24T23:15:07,873   /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:07,873    1819 |     __unguarded_linear_insert(_RandomAccessIterator __last,
2021-09-24T23:15:07,874         |     ^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:07,964   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, bool)::<lambda(const gemmi::Atom&, const gemmi::Atom&)> >]’:
2021-09-24T23:15:07,964   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:07,964    1839 |     __insertion_sort(_RandomAccessIterator __first,
2021-09-24T23:15:07,965         |     ^~~~~~~~~~~~~~~~
2021-09-24T23:15:07,965   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:09,120   In file included from /usr/include/c++/10/bits/stl_algo.h:61,
2021-09-24T23:15:09,121                    from /usr/include/c++/10/algorithm:62,
2021-09-24T23:15:09,121                    from include/gemmi/util.hpp:8,
2021-09-24T23:15:09,121                    from include/gemmi/cifdoc.hpp:11,
2021-09-24T23:15:09,121                    from include/gemmi/chemcomp.hpp:11,
2021-09-24T23:15:09,121                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:09,121                    from python/topo.cpp:3:
2021-09-24T23:15:09,122   /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >; _Distance = int; _Tp = gemmi::Atom; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, bool)::<lambda(const gemmi::Atom&, const gemmi::Atom&)> >]’:
2021-09-24T23:15:09,122   /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:09,122     223 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
2021-09-24T23:15:09,122         |     ^~~~~~~~~~~~~
2021-09-24T23:15:11,442   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:15:11,442                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:11,442                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:11,443                    from python/topo.cpp:3:
2021-09-24T23:15:11,443   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:15:11,443   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:15:11,443     171 |     vector<_Tp, _Alloc>::
2021-09-24T23:15:11,443         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:11,529   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:15:11,529   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-09-24T23:15:12,367   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-09-24T23:15:12,367   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-09-24T23:15:12,368     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:15:12,368         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:12,470   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:15:12,470                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:12,470                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:12,470                    from python/topo.cpp:3:
2021-09-24T23:15:12,470   /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::add_hydrogens_without_positions(const gemmi::ChemComp&, gemmi::Residue&)’:
2021-09-24T23:15:12,470   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:12,471    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:15:12,471         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:15:15,023   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:15:15,024                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:15,024                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:15,024                    from python/topo.cpp:3:
2021-09-24T23:15:15,024   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:15:15,024   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::iterator’ changed in GCC 7.1
2021-09-24T23:15:15,024     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:15:15,025         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:15,100   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:15:15,100   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:15:15,100     184 |     vector<_Tp, _Alloc>::
2021-09-24T23:15:15,100         |     ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:15,100   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:15:15,163   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:15:15,163   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:15:15,164   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:15:15,378   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:15:15,378                    from include/gemmi/util.hpp:8,
2021-09-24T23:15:15,378                    from include/gemmi/cifdoc.hpp:11,
2021-09-24T23:15:15,378                    from include/gemmi/chemcomp.hpp:11,
2021-09-24T23:15:15,378                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:15,378                    from python/topo.cpp:3:
2021-09-24T23:15:15,378   /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::ChemMod::apply_to(gemmi::ChemComp&) const::<lambda(const gemmi::Restraints::Bond&)> >]’:
2021-09-24T23:15:15,379   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:15:15,379     833 |     __remove_if(_ForwardIterator __first, _ForwardIterator __last,
2021-09-24T23:15:15,379         |     ^~~~~~~~~~~
2021-09-24T23:15:15,379   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:15:15,470   /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::ChemMod::apply_to(gemmi::ChemComp&) const::<lambda(const gemmi::Restraints::Angle&)> >]’:
2021-09-24T23:15:15,470   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:15:15,470   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:15:15,690   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:15:15,690                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:15,690                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:15,691                    from python/topo.cpp:3:
2021-09-24T23:15:15,691   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Angle&}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-09-24T23:15:15,691   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-09-24T23:15:15,691     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:15:15,691         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:16,706   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::BondedAtom}; _Tp = gemmi::BondedAtom; _Alloc = std::allocator<gemmi::BondedAtom>]’:
2021-09-24T23:15:16,706   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::BondedAtom>::iterator’ changed in GCC 7.1
2021-09-24T23:15:16,869   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::place_hydrogens(const gemmi::Atom&, gemmi::Topo::ResInfo&, const gemmi::Topo&)’:
2021-09-24T23:15:16,870   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::BondedAtom*, std::vector<gemmi::BondedAtom> >’ changed in GCC 7.1
2021-09-24T23:15:16,870     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:15:16,870         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:18,052   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Bond&}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-09-24T23:15:18,053   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-09-24T23:15:18,053     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:15:18,053         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:18,356   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Torsion&}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-09-24T23:15:18,356   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-09-24T23:15:19,231   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:15:19,231                    from include/gemmi/util.hpp:8,
2021-09-24T23:15:19,231                    from include/gemmi/cifdoc.hpp:11,
2021-09-24T23:15:19,232                    from include/gemmi/chemcomp.hpp:11,
2021-09-24T23:15:19,232                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:19,232                    from python/topo.cpp:3:
2021-09-24T23:15:19,232   /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gemmi::ChemMod::apply_to(gemmi::ChemComp&) const’:
2021-09-24T23:15:19,232   /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:15:19,232     914 |       return std::__remove_if(__first, __last,
2021-09-24T23:15:19,232         |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,233     915 |          __gnu_cxx::__ops::__pred_iter(__pred));
2021-09-24T23:15:19,233         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,233   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:15:19,233                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:19,233                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:19,233                    from python/topo.cpp:3:
2021-09-24T23:15:19,233   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:15:19,234    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:15:19,234         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,234   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:15:19,234                    from include/gemmi/util.hpp:8,
2021-09-24T23:15:19,234                    from include/gemmi/cifdoc.hpp:11,
2021-09-24T23:15:19,234                    from include/gemmi/chemcomp.hpp:11,
2021-09-24T23:15:19,234                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:19,234                    from python/topo.cpp:3:
2021-09-24T23:15:19,235   /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:15:19,235     914 |       return std::__remove_if(__first, __last,
2021-09-24T23:15:19,235         |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,235     915 |          __gnu_cxx::__ops::__pred_iter(__pred));
2021-09-24T23:15:19,235         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,235   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:15:19,235                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:19,235                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:19,236                    from python/topo.cpp:3:
2021-09-24T23:15:19,236   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:15:19,236    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-09-24T23:15:19,236         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,237   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:15:19,238    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:15:19,238         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:15:19,238   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:15:19,238    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:15:19,238         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,240   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-09-24T23:15:19,240    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:15:19,241         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:15:19,242   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:15:19,242    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:15:19,242         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:15:19,243   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-09-24T23:15:19,243    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-09-24T23:15:19,243         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,244   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:15:19,244                    from /usr/include/c++/10/string:40,
2021-09-24T23:15:19,244                    from include/gemmi/chemcomp.hpp:9,
2021-09-24T23:15:19,245                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:19,245                    from python/topo.cpp:3:
2021-09-24T23:15:19,245   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:19,245    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:15:19,245         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,245    1975 |          std::__iterator_category(__first));
2021-09-24T23:15:19,245         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,246   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:15:19,246                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:19,246                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:19,246                    from python/topo.cpp:3:
2021-09-24T23:15:19,246   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:19,246     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:15:19,247         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,247   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:15:19,247                    from /usr/include/c++/10/string:40,
2021-09-24T23:15:19,247                    from include/gemmi/chemcomp.hpp:9,
2021-09-24T23:15:19,247                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:19,248                    from python/topo.cpp:3:
2021-09-24T23:15:19,248   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:19,248    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:15:19,248         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:19,248    1975 |          std::__iterator_category(__first));
2021-09-24T23:15:19,249         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:21,226   In file included from /usr/include/c++/10/vector:66,
2021-09-24T23:15:21,226                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:21,226                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:21,226                    from python/topo.cpp:3:
2021-09-24T23:15:21,226   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’:
2021-09-24T23:15:21,226   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:21,227      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-09-24T23:15:21,227         |         ^~~~~~~~~~~~~
2021-09-24T23:15:21,227   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:21,345   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’:
2021-09-24T23:15:21,345   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:21,346     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:15:21,346         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:21,346     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:15:21,346         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:21,346     149 |            && __assignable>::
2021-09-24T23:15:21,346         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:21,346     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:15:21,347         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:22,235   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-09-24T23:15:22,235   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-09-24T23:15:22,235     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-09-24T23:15:22,236         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:22,236     148 |            && __is_trivial(_ValueType2)
2021-09-24T23:15:22,236         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:22,236     149 |            && __assignable>::
2021-09-24T23:15:22,236         |            ~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:22,236     150 |  __uninit_copy(__first, __last, __result);
2021-09-24T23:15:22,236         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:22,649   In file included from /usr/include/c++/10/vector:67,
2021-09-24T23:15:22,650                    from include/gemmi/chemcomp.hpp:10,
2021-09-24T23:15:22,650                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:22,650                    from python/topo.cpp:3:
2021-09-24T23:15:22,650   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Topo::initialize_refmac_topology(const gemmi::Structure&, gemmi::Model&, gemmi::MonLib&)’:
2021-09-24T23:15:22,650   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-09-24T23:15:22,650    1198 |    _M_realloc_insert(end(), __x);
2021-09-24T23:15:22,650         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-09-24T23:15:23,205   In file included from /usr/include/c++/10/algorithm:62,
2021-09-24T23:15:23,206                    from include/gemmi/util.hpp:8,
2021-09-24T23:15:23,206                    from include/gemmi/cifdoc.hpp:11,
2021-09-24T23:15:23,206                    from include/gemmi/chemcomp.hpp:11,
2021-09-24T23:15:23,206                    from include/gemmi/topo.hpp:8,
2021-09-24T23:15:23,206                    from python/topo.cpp:3:
2021-09-24T23:15:23,206   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, bool)::<lambda(const gemmi::Atom&, const gemmi::Atom&)> >]’:
2021-09-24T23:15:23,206   /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:23,207    1662 |     __heap_select(_RandomAccessIterator __first,
2021-09-24T23:15:23,207         |     ^~~~~~~~~~~~~
2021-09-24T23:15:23,207   /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:23,207   /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,201   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, bool)::<lambda(const gemmi::Atom&, const gemmi::Atom&)> >]’:
2021-09-24T23:15:54,201   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,201    1945 |     __introsort_loop(_RandomAccessIterator __first,
2021-09-24T23:15:54,201         |     ^~~~~~~~~~~~~~~~
2021-09-24T23:15:54,201   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,202   /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,203    1959 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
2021-09-24T23:15:54,203         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:54,204   /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,204    1937 |       std::__heap_select(__first, __middle, __last, __comp);
2021-09-24T23:15:54,204         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:54,474   /usr/include/c++/10/bits/stl_algo.h: In function ‘std::unique_ptr<gemmi::Topo> gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, bool)’:
2021-09-24T23:15:54,474   /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,475    1974 |    std::__introsort_loop(__first, __last,
2021-09-24T23:15:54,475         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-09-24T23:15:54,475    1975 |     std::__lg(__last - __first) * 2,
2021-09-24T23:15:54,475         |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:54,475    1976 |     __comp);
2021-09-24T23:15:54,475         |     ~~~~~~~
2021-09-24T23:15:54,476   /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,476    1886 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
2021-09-24T23:15:54,476         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:54,476   /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-09-24T23:15:54,476    1891 |  std::__insertion_sort(__first, __last, __comp);
2021-09-24T23:15:54,476         |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:15:56,855   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/unitcell.cpp -o build/temp.linux-armv7l-3.9/python/unitcell.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:16:29,564   In file included from /usr/include/c++/10/vector:72,
2021-09-24T23:16:29,564                    from include/gemmi/unitcell.hpp:10,
2021-09-24T23:16:29,564                    from python/unitcell.cpp:3:
2021-09-24T23:16:29,564   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-09-24T23:16:29,564   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-09-24T23:16:29,565     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:16:29,565         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:16:29,680   /usr/include/c++/10/bits/vector.tcc: In member function ‘gemmi::UnitCell gemmi::UnitCell::changed_basis_backward(const gemmi::Op&, bool)’:
2021-09-24T23:16:29,680   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-09-24T23:16:29,680     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:16:29,680         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:16:30,487   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-09-24T23:16:30,487   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2021-09-24T23:16:30,488     426 |       vector<_Tp, _Alloc>::
2021-09-24T23:16:30,488         |       ^~~~~~~~~~~~~~~~~~~
2021-09-24T23:16:48,832   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_smat33<double>::<lambda(const M&, pybind11::array_t<int>)>, pybind11::array_t<double, 16>, {const gemmi::SMat33<double>&, pybind11::array_t<int, 16>}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-09-24T23:16:48,832   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2021-09-24T23:16:48,832     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-09-24T23:16:48,833         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:16:50,001   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION_INFO="0.4.9" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/write.cpp -o build/temp.linux-armv7l-3.9/python/write.o -std=c++17 -fvisibility=hidden -g0
2021-09-24T23:17:11,021   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-09-24T23:17:11,021                    from /usr/include/c++/10/string:40,
2021-09-24T23:17:11,022                    from include/gemmi/sprintf.hpp:31,
2021-09-24T23:17:11,022                    from python/write.cpp:4:
2021-09-24T23:17:11,022   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Metadata::has(std::string gemmi::RefinementInfo::*) const::<lambda(const gemmi::RefinementInfo&)> >]’:
2021-09-24T23:17:11,022   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:11,022    1921 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
2021-09-24T23:17:11,022         |     ^~~~~~~~~
2021-09-24T23:17:11,022   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:11,052   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Metadata::has(double gemmi::RefinementInfo::*) const::<lambda(const gemmi::RefinementInfo&)> >]’:
2021-09-24T23:17:11,052   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:11,052   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,047   /usr/include/c++/10/bits/stl_algobase.h: In function ‘void gemmi::update_mmcif_block(const gemmi::Structure&, gemmi::cif::Block&, gemmi::MmcifOutputGroups)’:
2021-09-24T23:17:29,048   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,048    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,048         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,048    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,048         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,049   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,049    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,049         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,049    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,049         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,050   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,050    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,050         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,050    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,050         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,051   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,051    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,051         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,051    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,051         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,052   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,052    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,052         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,052    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,052         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,053   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,053    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,053         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,053    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,054         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,055   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,055    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,055         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,055    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,055         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,056   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,056    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,056         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,057    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,057         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,057   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,057    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,057         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,057    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,057         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,058   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,058    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,058         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,058    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,058         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,058   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,058    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,059         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,059    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,059         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,059   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-09-24T23:17:29,059    1974 |       return __find_if(__first, __last, __pred,
2021-09-24T23:17:29,059         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:29,059    1975 |          std::__iterator_category(__first));
2021-09-24T23:17:29,059         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-09-24T23:17:45,818   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/python/align.o build/temp.linux-armv7l-3.9/python/ccp4.o build/temp.linux-armv7l-3.9/python/cif.o build/temp.linux-armv7l-3.9/python/custom.o build/temp.linux-armv7l-3.9/python/elem.o build/temp.linux-armv7l-3.9/python/gemmi.o build/temp.linux-armv7l-3.9/python/grid.o build/temp.linux-armv7l-3.9/python/hkl.o build/temp.linux-armv7l-3.9/python/meta.o build/temp.linux-armv7l-3.9/python/mol.o build/temp.linux-armv7l-3.9/python/monlib.o build/temp.linux-armv7l-3.9/python/mtz.o build/temp.linux-armv7l-3.9/python/read.o build/temp.linux-armv7l-3.9/python/recgrid.o build/temp.linux-armv7l-3.9/python/scaling.o build/temp.linux-armv7l-3.9/python/search.o build/temp.linux-armv7l-3.9/python/sf.o build/temp.linux-armv7l-3.9/python/sym.o build/temp.linux-armv7l-3.9/python/topo.o build/temp.linux-armv7l-3.9/python/unitcell.o build/temp.linux-armv7l-3.9/python/write.o -Lbuild/temp.linux-armv7l-3.9 -lgemmi_zlib -lgemmi_zlib -o build/lib.linux-armv7l-3.9/gemmi.cpython-39-arm-linux-gnueabihf.so -Wl,-s
2021-09-24T23:17:50,023   installing to build/bdist.linux-armv7l/wheel
2021-09-24T23:17:50,023   running install
2021-09-24T23:17:50,024   running install_lib
2021-09-24T23:17:50,029   creating build/bdist.linux-armv7l
2021-09-24T23:17:50,029   creating build/bdist.linux-armv7l/wheel
2021-09-24T23:17:50,031   creating build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,032   copying build/lib.linux-armv7l-3.9/gemmi-examples/matthews.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,035   copying build/lib.linux-armv7l-3.9/gemmi-examples/aafreq.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,037   copying build/lib.linux-armv7l-3.9/gemmi-examples/rama_plot.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,039   copying build/lib.linux-armv7l-3.9/gemmi-examples/hello.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,041   copying build/lib.linux-armv7l-3.9/gemmi-examples/patterson_slice.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,043   copying build/lib.linux-armv7l-3.9/gemmi-examples/maskdiff.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,045   copying build/lib.linux-armv7l-3.9/gemmi-examples/__main__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,047   copying build/lib.linux-armv7l-3.9/gemmi-examples/weight.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,050   copying build/lib.linux-armv7l-3.9/gemmi-examples/ccd_subgraph.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,051   copying build/lib.linux-armv7l-3.9/gemmi-examples/cif_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,053   copying build/lib.linux-armv7l-3.9/gemmi-examples/simple_search.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,055   copying build/lib.linux-armv7l-3.9/gemmi-examples/multiproc.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,067   copying build/lib.linux-armv7l-3.9/gemmi-examples/ccd_gi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,069   copying build/lib.linux-armv7l-3.9/gemmi-examples/__init__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,071   copying build/lib.linux-armv7l-3.9/gemmi-examples/from_json.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,073   copying build/lib.linux-armv7l-3.9/gemmi-examples/maskcheck.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,075   copying build/lib.linux-armv7l-3.9/gemmi-examples/merge_mtz_mmcif.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,078   copying build/lib.linux-armv7l-3.9/gemmi-examples/rama_gather.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,080   copying build/lib.linux-armv7l-3.9/gemmi-examples/map2mtz.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,082   copying build/lib.linux-armv7l-3.9/gemmi-examples/long_geom.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,084   copying build/lib.linux-armv7l-3.9/gemmi-examples/mtrix_iso.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,087   copying build/lib.linux-armv7l-3.9/gemmi-examples/sub_ccd.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,089   copying build/lib.linux-armv7l-3.9/gemmi-examples/monomers.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,092   copying build/lib.linux-armv7l-3.9/gemmi-examples/mtz_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,094   copying build/lib.linux-armv7l-3.9/gemmi-examples/col_order.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-09-24T23:17:50,096   copying build/lib.linux-armv7l-3.9/gemmi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-09-24T23:17:50,207   running install_egg_info
2021-09-24T23:17:50,230   running egg_info
2021-09-24T23:17:50,231   writing gemmi.egg-info/PKG-INFO
2021-09-24T23:17:50,233   writing dependency_links to gemmi.egg-info/dependency_links.txt
2021-09-24T23:17:50,235   writing top-level names to gemmi.egg-info/top_level.txt
2021-09-24T23:17:50,252   reading manifest file 'gemmi.egg-info/SOURCES.txt'
2021-09-24T23:17:50,308   reading manifest template 'MANIFEST.in'
2021-09-24T23:17:50,449   adding license file 'LICENSE.txt'
2021-09-24T23:17:50,470   writing manifest file 'gemmi.egg-info/SOURCES.txt'
2021-09-24T23:17:50,472   Copying gemmi.egg-info to build/bdist.linux-armv7l/wheel/gemmi-0.4.9-py3.9.egg-info
2021-09-24T23:17:50,483   running install_scripts
2021-09-24T23:17:50,565   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-09-24T23:17:50,570   creating build/bdist.linux-armv7l/wheel/gemmi-0.4.9.dist-info/WHEEL
2021-09-24T23:17:50,573   creating '/tmp/pip-wheel-qz__8tts/gemmi-0.4.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-09-24T23:17:51,643   adding 'gemmi.cpython-39-arm-linux-gnueabihf.so'
2021-09-24T23:17:51,693   adding 'gemmi-examples/__init__.py'
2021-09-24T23:17:51,694   adding 'gemmi-examples/__main__.py'
2021-09-24T23:17:51,695   adding 'gemmi-examples/aafreq.py'
2021-09-24T23:17:51,696   adding 'gemmi-examples/ccd_gi.py'
2021-09-24T23:17:51,698   adding 'gemmi-examples/ccd_subgraph.py'
2021-09-24T23:17:51,699   adding 'gemmi-examples/cif_i_sigi.py'
2021-09-24T23:17:51,700   adding 'gemmi-examples/col_order.py'
2021-09-24T23:17:51,701   adding 'gemmi-examples/from_json.py'
2021-09-24T23:17:51,702   adding 'gemmi-examples/hello.py'
2021-09-24T23:17:51,703   adding 'gemmi-examples/long_geom.py'
2021-09-24T23:17:51,704   adding 'gemmi-examples/map2mtz.py'
2021-09-24T23:17:51,706   adding 'gemmi-examples/maskcheck.py'
2021-09-24T23:17:51,707   adding 'gemmi-examples/maskdiff.py'
2021-09-24T23:17:51,709   adding 'gemmi-examples/matthews.py'
2021-09-24T23:17:51,710   adding 'gemmi-examples/merge_mtz_mmcif.py'
2021-09-24T23:17:51,711   adding 'gemmi-examples/monomers.py'
2021-09-24T23:17:51,713   adding 'gemmi-examples/mtrix_iso.py'
2021-09-24T23:17:51,714   adding 'gemmi-examples/mtz_i_sigi.py'
2021-09-24T23:17:51,715   adding 'gemmi-examples/multiproc.py'
2021-09-24T23:17:51,716   adding 'gemmi-examples/patterson_slice.py'
2021-09-24T23:17:51,717   adding 'gemmi-examples/rama_gather.py'
2021-09-24T23:17:51,719   adding 'gemmi-examples/rama_plot.py'
2021-09-24T23:17:51,720   adding 'gemmi-examples/simple_search.py'
2021-09-24T23:17:51,721   adding 'gemmi-examples/sub_ccd.py'
2021-09-24T23:17:51,723   adding 'gemmi-examples/weight.py'
2021-09-24T23:17:51,726   adding 'gemmi-0.4.9.dist-info/LICENSE.txt'
2021-09-24T23:17:51,727   adding 'gemmi-0.4.9.dist-info/METADATA'
2021-09-24T23:17:51,728   adding 'gemmi-0.4.9.dist-info/WHEEL'
2021-09-24T23:17:51,729   adding 'gemmi-0.4.9.dist-info/top_level.txt'
2021-09-24T23:17:51,730   adding 'gemmi-0.4.9.dist-info/RECORD'
2021-09-24T23:17:51,769   removing build/bdist.linux-armv7l/wheel
2021-09-24T23:17:51,872   Building wheel for gemmi (setup.py): finished with status 'done'
2021-09-24T23:17:51,907   Created wheel for gemmi: filename=gemmi-0.4.9-cp39-cp39-linux_armv7l.whl size=2312321 sha256=fd76139e419765029a4c1ccf388ddeb9cb6bd76c9f29e539e75520e9f0c47796
2021-09-24T23:17:51,908   Stored in directory: /tmp/pip-ephem-wheel-cache-fn58wibv/wheels/80/7e/b1/b9b0584158b1bef2f41daa83dac0502fba41a5e2a9616123cb
2021-09-24T23:17:51,919 Successfully built gemmi
2021-09-24T23:17:51,991 Removed build tracker: '/tmp/pip-req-tracker-6qtry1zn'