2021-09-28T17:14:31,377 Created temporary directory: /tmp/pip-ephem-wheel-cache-s5dcbkrj 2021-09-28T17:14:31,380 Created temporary directory: /tmp/pip-req-tracker-o6u5kwfy 2021-09-28T17:14:31,380 Initialized build tracking at /tmp/pip-req-tracker-o6u5kwfy 2021-09-28T17:14:31,380 Created build tracker: /tmp/pip-req-tracker-o6u5kwfy 2021-09-28T17:14:31,381 Entered build tracker: /tmp/pip-req-tracker-o6u5kwfy 2021-09-28T17:14:31,381 Created temporary directory: /tmp/pip-wheel-xh6mvolq 2021-09-28T17:14:31,417 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-09-28T17:14:31,420 2 location(s) to search for versions of pyecvl: 2021-09-28T17:14:31,420 * https://pypi.org/simple/pyecvl/ 2021-09-28T17:14:31,420 * https://www.piwheels.org/simple/pyecvl/ 2021-09-28T17:14:31,420 Fetching project page and analyzing links: https://pypi.org/simple/pyecvl/ 2021-09-28T17:14:31,421 Getting page https://pypi.org/simple/pyecvl/ 2021-09-28T17:14:31,422 Found index url https://pypi.org/simple 2021-09-28T17:14:31,521 Found link https://files.pythonhosted.org/packages/11/35/436c11b7bf6589553afa11f2596ab078d443ec8e59aa16795e617511ac68/pyecvl-0.1.0.tar.gz#sha256=3c68de79fdd935eb83c0c5906383954b0a2f053890e56508f8329fce62159e9e (from https://pypi.org/simple/pyecvl/), version: 0.1.0 2021-09-28T17:14:31,521 Found link https://files.pythonhosted.org/packages/e7/4c/9b0b4601b3c7f0087eb35b4bc13c53df0353806c1a52fa5611c10ba49d96/pyecvl-0.2.0.tar.gz#sha256=9d8e8359566814c96bc6691a7d0c2d2f0adad922445f777fa4b5d6cbb57fe640 (from https://pypi.org/simple/pyecvl/), version: 0.2.0 2021-09-28T17:14:31,522 Found link https://files.pythonhosted.org/packages/46/05/e6a4918046e3d93dfa518787aaa9f23580d9e9232da0f573a6f25748c0d0/pyecvl-0.2.1.tar.gz#sha256=f77d11f6dcd4124ab4382cebad155be44f1360ee7977b5954c3efae3cbb771d8 (from https://pypi.org/simple/pyecvl/), version: 0.2.1 2021-09-28T17:14:31,522 Found link https://files.pythonhosted.org/packages/46/d7/b1d60441f1cec59f388e6b70ed6c7575cc54aa68eb777616f842c73de67a/pyecvl-0.3.0.tar.gz#sha256=9780467e3d0180ca290c4485a3f80614679f0d0b8e0eb476f7b6649b0c90fb0d (from https://pypi.org/simple/pyecvl/), version: 0.3.0 2021-09-28T17:14:31,522 Found link https://files.pythonhosted.org/packages/d1/83/e0b38dbcb3ffc2ccc1a4056769b21caadf234384bd3505087b62ade7ab5b/pyecvl-0.4.0.tar.gz#sha256=c1578b9366dcf5f71b42b505d81af9111cef85bf9e4b12978c978c31e31dd6a5 (from https://pypi.org/simple/pyecvl/), version: 0.4.0 2021-09-28T17:14:31,522 Found link https://files.pythonhosted.org/packages/c4/fb/b579b706f9c313dd9a1146957f03214ec39a0eb05310c48825e18e8ab999/pyecvl-0.4.2.tar.gz#sha256=a4cd67c532081d7fbd6f1ed2297a6eaa552b74dfa051b44807e38d6ae6bbc639 (from https://pypi.org/simple/pyecvl/), version: 0.4.2 2021-09-28T17:14:31,523 Found link https://files.pythonhosted.org/packages/9e/ef/2e470cc1b7819bd162dea2abb80f62eebfc316e040953a2d2d8cedfd3258/pyecvl-0.5.0.tar.gz#sha256=041fdb95317299646d749ab9d1fb3cfe8f5c744267358ff16cc6737901d94f6c (from https://pypi.org/simple/pyecvl/), version: 0.5.0 2021-09-28T17:14:31,523 Found link https://files.pythonhosted.org/packages/43/5c/abff5b1632f5aa646de9064ff96ddf979c6263ccb7359a928a0985b94725/pyecvl-0.5.1.tar.gz#sha256=8fa655c2f656d74ddda427f90febe524b2ea4c784f7c03ba3804fe2dfaa90eeb (from https://pypi.org/simple/pyecvl/), version: 0.5.1 2021-09-28T17:14:31,523 Found link https://files.pythonhosted.org/packages/28/fb/7b5e2a4385ec203795da37470507355d88236262c96177aad6b6eae1ba83/pyecvl-0.5.2.tar.gz#sha256=087da936f4df39d63f99188f5e079175abea977e6262a194319dedc77eb069b6 (from https://pypi.org/simple/pyecvl/), version: 0.5.2 2021-09-28T17:14:31,524 Found link https://files.pythonhosted.org/packages/4f/d2/e84628aff5a9eaae7b8a7214dc0ea0476c225134838d549857c1b554a760/pyecvl-0.6.0.tar.gz#sha256=42e4dc8934abc41ad9b79fb9a9df8505543623b305a064953e8be6e7af938413 (from https://pypi.org/simple/pyecvl/), version: 0.6.0 2021-09-28T17:14:31,524 Found link https://files.pythonhosted.org/packages/00/a4/362cd19eb193e21e685e191ac9b4a22b77ea2d90254440e3e4c5570797c8/pyecvl-0.7.0.tar.gz#sha256=e16de8e8900995a05633ff795df05cdce3646efd33a71eb2928d48630fcc9d50 (from https://pypi.org/simple/pyecvl/), version: 0.7.0 2021-09-28T17:14:31,524 Found link https://files.pythonhosted.org/packages/f3/9d/2cf40046b037eaac7fab1620bcc3773c45b56339cff79426c98f3f0e29e7/pyecvl-0.7.1.tar.gz#sha256=21a482f03424e03f7014125924e0988a74d9dfc4867eb3f3cb9c31ab851b207b (from https://pypi.org/simple/pyecvl/), version: 0.7.1 2021-09-28T17:14:31,524 Found link https://files.pythonhosted.org/packages/0c/82/8d3fcfff652c84ae2a661032d152f980b821e65d859c69c0b1e296c704b0/pyecvl-0.8.0.tar.gz#sha256=ff114b9187610508d12c7df9b2ca1bd543f2adf83fd50d33e57bff623003d9c0 (from https://pypi.org/simple/pyecvl/), version: 0.8.0 2021-09-28T17:14:31,525 Found link https://files.pythonhosted.org/packages/86/56/68362e7829bf91717f7d9d79e33b10c363b564fc68d7642049dfddf2752c/pyecvl-0.8.1.tar.gz#sha256=da8e02956ea488fec598d90e71932cffdc33972f0dc67e9ebf82581c0af6c75b (from https://pypi.org/simple/pyecvl/), version: 0.8.1 2021-09-28T17:14:31,525 Found link https://files.pythonhosted.org/packages/ef/1e/38529f0733ccbdceb617733fdfebb346be3cd8db8edb9396d99ec42b1b2c/pyecvl-0.9.0.tar.gz#sha256=bea69dcccf559d785b9255bb5a04959a2c786d284dc8500353fe84e3cdcd0cbf (from https://pypi.org/simple/pyecvl/), version: 0.9.0 2021-09-28T17:14:31,525 Found link https://files.pythonhosted.org/packages/5a/7f/99388178366708ec242ff9219031aa96f5470fbf84969e67b518c8820a53/pyecvl-0.9.1.tar.gz#sha256=1c97858d9355e10c2b0f762d02e9c0f43b50b0bc1e2ae6df45246f0881fd91d2 (from https://pypi.org/simple/pyecvl/), version: 0.9.1 2021-09-28T17:14:31,526 Found link https://files.pythonhosted.org/packages/df/f6/e3173d32fea961863db23ce19a5c34ed6d2dd879de220a2642ab49b3cb8c/pyecvl-0.10.0.tar.gz#sha256=1455bc9ce95cb7fc19fa687ba8ee08199b975fc098266b94a775dbc337d4fe99 (from https://pypi.org/simple/pyecvl/), version: 0.10.0 2021-09-28T17:14:31,526 Found link https://files.pythonhosted.org/packages/64/6b/f312822e14e06b3675519c91cf5591e9bebbe55245d586734bc428b5f85d/pyecvl-0.10.1.tar.gz#sha256=67bfd8b70503335fb6432fe0c9c193d3d0782a181625d8403a430ddda3e69263 (from https://pypi.org/simple/pyecvl/), version: 0.10.1 2021-09-28T17:14:31,526 Found link https://files.pythonhosted.org/packages/47/a2/8a152427fcf53c105148d87065013b3cae18bd045ee0cccfa475f1cf8d1e/pyecvl-0.11.0.tar.gz#sha256=e0c8d4162cdb10114e8480a35fd6570872487973920901150eb8bb872d099d27 (from https://pypi.org/simple/pyecvl/), version: 0.11.0 2021-09-28T17:14:31,526 Found link https://files.pythonhosted.org/packages/c9/ba/bb29c19306ae7f3ec0943f7d2bd5bcc3e6efcdee51b146d65e82523dce6b/pyecvl-0.12.0.tar.gz#sha256=df8d35a83a396508272af0998ed395a80c942f7bbed6d173b005fd48758354d1 (from https://pypi.org/simple/pyecvl/), version: 0.12.0 2021-09-28T17:14:31,527 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyecvl/ 2021-09-28T17:14:31,527 Getting page https://www.piwheels.org/simple/pyecvl/ 2021-09-28T17:14:31,528 Found index url https://www.piwheels.org/simple 2021-09-28T17:14:31,662 Skipping link: not a file: https://www.piwheels.org/simple/pyecvl/ 2021-09-28T17:14:31,662 Skipping link: not a file: https://pypi.org/simple/pyecvl/ 2021-09-28T17:14:31,683 Given no hashes to check 1 links for project 'pyecvl': discarding no candidates 2021-09-28T17:14:31,702 Collecting pyecvl==0.12.0 2021-09-28T17:14:31,703 Created temporary directory: /tmp/pip-unpack-_lqd94i0 2021-09-28T17:14:31,753 Downloading pyecvl-0.12.0.tar.gz (98 kB) 2021-09-28T17:14:31,937 Added pyecvl==0.12.0 from https://files.pythonhosted.org/packages/c9/ba/bb29c19306ae7f3ec0943f7d2bd5bcc3e6efcdee51b146d65e82523dce6b/pyecvl-0.12.0.tar.gz#sha256=df8d35a83a396508272af0998ed395a80c942f7bbed6d173b005fd48758354d1 to build tracker '/tmp/pip-req-tracker-o6u5kwfy' 2021-09-28T17:14:31,938 Running setup.py (path:/tmp/pip-wheel-xh6mvolq/pyecvl_b9aeeec057cd479298afbe6f82d3ec12/setup.py) egg_info for package pyecvl 2021-09-28T17:14:31,939 Created temporary directory: /tmp/pip-pip-egg-info-_7r4223n 2021-09-28T17:14:31,940 Running command python setup.py egg_info 2021-09-28T17:14:32,852 running egg_info 2021-09-28T17:14:32,854 creating /tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info 2021-09-28T17:14:32,855 writing /tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info/PKG-INFO 2021-09-28T17:14:32,858 writing dependency_links to /tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info/dependency_links.txt 2021-09-28T17:14:32,860 writing requirements to /tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info/requires.txt 2021-09-28T17:14:32,861 writing top-level names to /tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info/top_level.txt 2021-09-28T17:14:32,863 writing manifest file '/tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info/SOURCES.txt' 2021-09-28T17:14:33,217 reading manifest file '/tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info/SOURCES.txt' 2021-09-28T17:14:33,219 reading manifest template 'MANIFEST.in' 2021-09-28T17:14:33,247 adding license file 'LICENSE' 2021-09-28T17:14:33,253 writing manifest file '/tmp/pip-pip-egg-info-_7r4223n/pyecvl.egg-info/SOURCES.txt' 2021-09-28T17:14:33,336 Source in /tmp/pip-wheel-xh6mvolq/pyecvl_b9aeeec057cd479298afbe6f82d3ec12 has version 0.12.0, which satisfies requirement pyecvl==0.12.0 from https://files.pythonhosted.org/packages/c9/ba/bb29c19306ae7f3ec0943f7d2bd5bcc3e6efcdee51b146d65e82523dce6b/pyecvl-0.12.0.tar.gz#sha256=df8d35a83a396508272af0998ed395a80c942f7bbed6d173b005fd48758354d1 2021-09-28T17:14:33,337 Removed pyecvl==0.12.0 from https://files.pythonhosted.org/packages/c9/ba/bb29c19306ae7f3ec0943f7d2bd5bcc3e6efcdee51b146d65e82523dce6b/pyecvl-0.12.0.tar.gz#sha256=df8d35a83a396508272af0998ed395a80c942f7bbed6d173b005fd48758354d1 from build tracker '/tmp/pip-req-tracker-o6u5kwfy' 2021-09-28T17:14:33,341 Created temporary directory: /tmp/pip-unpack-93oshizt 2021-09-28T17:14:33,342 Building wheels for collected packages: pyecvl 2021-09-28T17:14:33,347 Created temporary directory: /tmp/pip-wheel-nmzlz_do 2021-09-28T17:14:33,348 Building wheel for pyecvl (setup.py): started 2021-09-28T17:14:33,348 Destination directory: /tmp/pip-wheel-nmzlz_do 2021-09-28T17:14:33,348 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xh6mvolq/pyecvl_b9aeeec057cd479298afbe6f82d3ec12/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xh6mvolq/pyecvl_b9aeeec057cd479298afbe6f82d3ec12/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nmzlz_do 2021-09-28T17:14:34,181 running bdist_wheel 2021-09-28T17:14:34,340 running build 2021-09-28T17:14:34,340 running build_py 2021-09-28T17:14:34,479 creating build 2021-09-28T17:14:34,480 creating build/lib.linux-armv7l-3.9 2021-09-28T17:14:34,480 creating build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,481 copying pyecvl/support_imgcodecs.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,483 copying pyecvl/dataset_generator.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,485 copying pyecvl/support_nifti.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,486 copying pyecvl/imgproc.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,489 copying pyecvl/arithmetic.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,491 copying pyecvl/version.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,493 copying pyecvl/support_dcmtk.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,494 copying pyecvl/image.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,497 copying pyecvl/support_eddl.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,499 copying pyecvl/__init__.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,501 copying pyecvl/support_openslide.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,503 copying pyecvl/ecvl.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,505 copying pyecvl/dataset_parser.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,507 copying pyecvl/augmentations.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,510 copying pyecvl/datatype.py -> build/lib.linux-armv7l-3.9/pyecvl 2021-09-28T17:14:34,513 running build_ext 2021-09-28T17:14:34,520 building 'pyecvl._core' extension 2021-09-28T17:14:34,521 creating build/temp.linux-armv7l-3.9 2021-09-28T17:14:34,521 creating build/temp.linux-armv7l-3.9/src 2021-09-28T17:14:34,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c src/_core.cpp -o build/temp.linux-armv7l-3.9/src/_core.o -std=c++17 -fvisibility=hidden -DECVL_WITH_DICOM -DECVL_WITH_OPENSLIDE -DECVL_EDDL 2021-09-28T17:14:34,664 src/_core.cpp:3:10: fatal error: ecvl/core/datatype.h: No such file or directory 2021-09-28T17:14:34,664 3 | #include 2021-09-28T17:14:34,664 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-09-28T17:14:34,665 compilation terminated. 2021-09-28T17:14:34,668 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-09-28T17:14:34,752 Building wheel for pyecvl (setup.py): finished with status 'error' 2021-09-28T17:14:34,752 ERROR: Failed building wheel for pyecvl 2021-09-28T17:14:34,753 Running setup.py clean for pyecvl 2021-09-28T17:14:34,753 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xh6mvolq/pyecvl_b9aeeec057cd479298afbe6f82d3ec12/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xh6mvolq/pyecvl_b9aeeec057cd479298afbe6f82d3ec12/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-09-28T17:14:35,558 running clean 2021-09-28T17:14:35,560 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-09-28T17:14:35,561 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-09-28T17:14:35,568 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-09-28T17:14:35,568 'build/scripts-3.9' does not exist -- can't clean it 2021-09-28T17:14:35,569 removing 'build' 2021-09-28T17:14:35,622 Failed to build pyecvl 2021-09-28T17:14:35,623 ERROR: Failed to build one or more wheels 2021-09-28T17:14:35,624 Exception information: 2021-09-28T17:14:35,624 Traceback (most recent call last): 2021-09-28T17:14:35,624 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-09-28T17:14:35,624 status = self.run(options, args) 2021-09-28T17:14:35,624 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-09-28T17:14:35,624 return func(self, options, args) 2021-09-28T17:14:35,624 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-09-28T17:14:35,624 raise CommandError( 2021-09-28T17:14:35,624 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-09-28T17:14:35,627 Removed build tracker: '/tmp/pip-req-tracker-o6u5kwfy'