2021-09-29T09:35:29,320 Created temporary directory: /tmp/pip-ephem-wheel-cache-2v3cnyjo
2021-09-29T09:35:29,322 Created temporary directory: /tmp/pip-req-tracker-55tx50e2
2021-09-29T09:35:29,323 Initialized build tracking at /tmp/pip-req-tracker-55tx50e2
2021-09-29T09:35:29,323 Created build tracker: /tmp/pip-req-tracker-55tx50e2
2021-09-29T09:35:29,323 Entered build tracker: /tmp/pip-req-tracker-55tx50e2
2021-09-29T09:35:29,324 Created temporary directory: /tmp/pip-wheel-_e9k3gu9
2021-09-29T09:35:29,358 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-29T09:35:29,361 2 location(s) to search for versions of clearcnv:
2021-09-29T09:35:29,361 * https://pypi.org/simple/clearcnv/
2021-09-29T09:35:29,361 * https://www.piwheels.org/simple/clearcnv/
2021-09-29T09:35:29,361 Fetching project page and analyzing links: https://pypi.org/simple/clearcnv/
2021-09-29T09:35:29,362 Getting page https://pypi.org/simple/clearcnv/
2021-09-29T09:35:29,364 Found index url https://pypi.org/simple
2021-09-29T09:35:29,453   Found link https://files.pythonhosted.org/packages/9e/56/2bd290685ae8b425115d75335e1d227330c4028ba6914a325e2963a4dc0f/clearCNV-0.303.tar.gz#sha256=df5bb11cec7f1609ac6c82710262c9201cc1f4c59de046f6340e6e00aa67e3ec (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.303
2021-09-29T09:35:29,454   Found link https://files.pythonhosted.org/packages/8d/5e/f012a8083dacf2c6a3f87fc83e17f838151d9c33ecaa83ab9df420f87123/clearCNV-0.304.tar.gz#sha256=4e9096332b940fec1478940b43e335ca100f27bc11535277742358c17b2f35ec (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.304
2021-09-29T09:35:29,454 Fetching project page and analyzing links: https://www.piwheels.org/simple/clearcnv/
2021-09-29T09:35:29,454 Getting page https://www.piwheels.org/simple/clearcnv/
2021-09-29T09:35:29,455 Found index url https://www.piwheels.org/simple
2021-09-29T09:35:29,568   Skipping link: No binaries permitted for clearcnv: https://www.piwheels.org/simple/clearcnv/clearCNV-0.303-py2.py3-none-any.whl#sha256=d7403657554d9d98e0cd60f6fdafe886551a3dfb6d04d99057bfb47166164b7f (from https://www.piwheels.org/simple/clearcnv/) (requires-python:>=3.7)
2021-09-29T09:35:29,569 Skipping link: not a file: https://www.piwheels.org/simple/clearcnv/
2021-09-29T09:35:29,569 Skipping link: not a file: https://pypi.org/simple/clearcnv/
2021-09-29T09:35:29,586 Given no hashes to check 1 links for project 'clearcnv': discarding no candidates
2021-09-29T09:35:29,602 Collecting clearcnv==0.304
2021-09-29T09:35:29,604   Created temporary directory: /tmp/pip-unpack-2cn7ornu
2021-09-29T09:35:29,836   Downloading clearCNV-0.304.tar.gz (1.8 MB)
2021-09-29T09:35:30,500   Added clearcnv==0.304 from https://files.pythonhosted.org/packages/8d/5e/f012a8083dacf2c6a3f87fc83e17f838151d9c33ecaa83ab9df420f87123/clearCNV-0.304.tar.gz#sha256=4e9096332b940fec1478940b43e335ca100f27bc11535277742358c17b2f35ec to build tracker '/tmp/pip-req-tracker-55tx50e2'
2021-09-29T09:35:30,501     Running setup.py (path:/tmp/pip-wheel-_e9k3gu9/clearcnv_6ba5ccc14b1f4240bb3114f7835a5e25/setup.py) egg_info for package clearcnv
2021-09-29T09:35:30,501     Created temporary directory: /tmp/pip-pip-egg-info-l49wtx3z
2021-09-29T09:35:30,502     Running command python setup.py egg_info
2021-09-29T09:35:31,617     running egg_info
2021-09-29T09:35:31,620     creating /tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info
2021-09-29T09:35:31,621     writing /tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/PKG-INFO
2021-09-29T09:35:31,624     writing dependency_links to /tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/dependency_links.txt
2021-09-29T09:35:31,626     writing entry points to /tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/entry_points.txt
2021-09-29T09:35:31,627     writing requirements to /tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/requires.txt
2021-09-29T09:35:31,628     writing top-level names to /tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/top_level.txt
2021-09-29T09:35:31,630     writing manifest file '/tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/SOURCES.txt'
2021-09-29T09:35:31,638     reading manifest file '/tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/SOURCES.txt'
2021-09-29T09:35:31,640     reading manifest template 'MANIFEST.in'
2021-09-29T09:35:31,641     warning: no files found matching 'AUTHORS.rst'
2021-09-29T09:35:31,641     warning: no files found matching 'CONTRIBUTING.rst'
2021-09-29T09:35:31,678     warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-29T09:35:31,679     warning: no previously-included files matching '*.py[co]' found under directory '*'
2021-09-29T09:35:31,680     warning: no previously-included files matching '*.sh' found under directory '*'
2021-09-29T09:35:31,680     warning: no files found matching '*.rst' under directory 'docs'
2021-09-29T09:35:31,681     warning: no files found matching 'conf.py' under directory 'docs'
2021-09-29T09:35:31,681     warning: no files found matching 'Makefile' under directory 'docs'
2021-09-29T09:35:31,681     warning: no files found matching 'make.bat' under directory 'docs'
2021-09-29T09:35:31,681     warning: no files found matching '*.jpg' under directory 'docs'
2021-09-29T09:35:31,681     warning: no files found matching '*.png' under directory 'docs'
2021-09-29T09:35:31,682     warning: no files found matching '*.gif' under directory 'docs'
2021-09-29T09:35:31,704     warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T09:35:31,715     warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T09:35:31,770     warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static'
2021-09-29T09:35:31,783     adding license file 'LICENSE'
2021-09-29T09:35:31,790     writing manifest file '/tmp/pip-pip-egg-info-l49wtx3z/clearCNV.egg-info/SOURCES.txt'
2021-09-29T09:35:31,858   Source in /tmp/pip-wheel-_e9k3gu9/clearcnv_6ba5ccc14b1f4240bb3114f7835a5e25 has version 0.304, which satisfies requirement clearcnv==0.304 from https://files.pythonhosted.org/packages/8d/5e/f012a8083dacf2c6a3f87fc83e17f838151d9c33ecaa83ab9df420f87123/clearCNV-0.304.tar.gz#sha256=4e9096332b940fec1478940b43e335ca100f27bc11535277742358c17b2f35ec
2021-09-29T09:35:31,859   Removed clearcnv==0.304 from https://files.pythonhosted.org/packages/8d/5e/f012a8083dacf2c6a3f87fc83e17f838151d9c33ecaa83ab9df420f87123/clearCNV-0.304.tar.gz#sha256=4e9096332b940fec1478940b43e335ca100f27bc11535277742358c17b2f35ec from build tracker '/tmp/pip-req-tracker-55tx50e2'
2021-09-29T09:35:31,865 Created temporary directory: /tmp/pip-unpack-0o6zflb9
2021-09-29T09:35:31,866 Building wheels for collected packages: clearcnv
2021-09-29T09:35:31,871   Created temporary directory: /tmp/pip-wheel-x0u3rbda
2021-09-29T09:35:31,871   Building wheel for clearcnv (setup.py): started
2021-09-29T09:35:31,872   Destination directory: /tmp/pip-wheel-x0u3rbda
2021-09-29T09:35:31,872   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_e9k3gu9/clearcnv_6ba5ccc14b1f4240bb3114f7835a5e25/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_e9k3gu9/clearcnv_6ba5ccc14b1f4240bb3114f7835a5e25/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x0u3rbda
2021-09-29T09:35:32,978   running bdist_wheel
2021-09-29T09:35:32,982   running build
2021-09-29T09:35:32,983   running build_py
2021-09-29T09:35:32,989   creating build
2021-09-29T09:35:32,990   creating build/lib
2021-09-29T09:35:32,990   creating build/lib/tests
2021-09-29T09:35:32,991   copying tests/test_misc.py -> build/lib/tests
2021-09-29T09:35:32,993   copying tests/__init__.py -> build/lib/tests
2021-09-29T09:35:32,996   creating build/lib/clearCNV
2021-09-29T09:35:32,996   copying clearCNV/cnv_calling.py -> build/lib/clearCNV
2021-09-29T09:35:32,999   copying clearCNV/misc.py -> build/lib/clearCNV
2021-09-29T09:35:33,002   copying clearCNV/__main__.py -> build/lib/clearCNV
2021-09-29T09:35:33,004   copying clearCNV/workflow_cnv_calling.py -> build/lib/clearCNV
2021-09-29T09:35:33,006   copying clearCNV/matchscores.py -> build/lib/clearCNV
2021-09-29T09:35:33,008   copying clearCNV/_version.py -> build/lib/clearCNV
2021-09-29T09:35:33,010   copying clearCNV/cnv_arithmetics.py -> build/lib/clearCNV
2021-09-29T09:35:33,012   copying clearCNV/visualize_scores.py -> build/lib/clearCNV
2021-09-29T09:35:33,015   copying clearCNV/workflow_reassignment.py -> build/lib/clearCNV
2021-09-29T09:35:33,017   copying clearCNV/__init__.py -> build/lib/clearCNV
2021-09-29T09:35:33,018   copying clearCNV/util.py -> build/lib/clearCNV
2021-09-29T09:35:33,022   creating build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,023   copying clearCNV/viz_reassignment/store.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,026   copying clearCNV/viz_reassignment/app.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,028   copying clearCNV/viz_reassignment/cache.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,030   copying clearCNV/viz_reassignment/ui_plots.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,032   copying clearCNV/viz_reassignment/ui.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,035   copying clearCNV/viz_reassignment/__init__.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,037   copying clearCNV/viz_reassignment/settings.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,039   copying clearCNV/viz_reassignment/callbacks.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T09:35:33,041   running egg_info
2021-09-29T09:35:33,052   writing clearCNV.egg-info/PKG-INFO
2021-09-29T09:35:33,054   writing dependency_links to clearCNV.egg-info/dependency_links.txt
2021-09-29T09:35:33,056   writing entry points to clearCNV.egg-info/entry_points.txt
2021-09-29T09:35:33,058   writing requirements to clearCNV.egg-info/requires.txt
2021-09-29T09:35:33,059   writing top-level names to clearCNV.egg-info/top_level.txt
2021-09-29T09:35:33,066   reading manifest file 'clearCNV.egg-info/SOURCES.txt'
2021-09-29T09:35:33,071   reading manifest template 'MANIFEST.in'
2021-09-29T09:35:33,072   warning: no files found matching 'AUTHORS.rst'
2021-09-29T09:35:33,072   warning: no files found matching 'CONTRIBUTING.rst'
2021-09-29T09:35:33,106   warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-29T09:35:33,107   warning: no previously-included files matching '*.py[co]' found under directory '*'
2021-09-29T09:35:33,108   warning: no previously-included files matching '*.sh' found under directory '*'
2021-09-29T09:35:33,109   warning: no files found matching '*.rst' under directory 'docs'
2021-09-29T09:35:33,109   warning: no files found matching 'conf.py' under directory 'docs'
2021-09-29T09:35:33,109   warning: no files found matching 'Makefile' under directory 'docs'
2021-09-29T09:35:33,109   warning: no files found matching 'make.bat' under directory 'docs'
2021-09-29T09:35:33,110   warning: no files found matching '*.jpg' under directory 'docs'
2021-09-29T09:35:33,110   warning: no files found matching '*.png' under directory 'docs'
2021-09-29T09:35:33,110   warning: no files found matching '*.gif' under directory 'docs'
2021-09-29T09:35:33,131   warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T09:35:33,141   warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T09:35:33,194   warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static'
2021-09-29T09:35:33,207   adding license file 'LICENSE'
2021-09-29T09:35:33,216   writing manifest file 'clearCNV.egg-info/SOURCES.txt'
2021-09-29T09:35:33,229   creating build/lib/tests/testdata
2021-09-29T09:35:33,230   copying tests/testdata/GC_annotations.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,232   copying tests/testdata/allbams.txt -> build/lib/tests/testdata
2021-09-29T09:35:33,234   copying tests/testdata/allmerged.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,236   copying tests/testdata/annotations.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,238   copying tests/testdata/annotations2.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,240   copying tests/testdata/bamfiles.txt -> build/lib/tests/testdata
2021-09-29T09:35:33,242   copying tests/testdata/bedfile.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,243   copying tests/testdata/bedfile_alt.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,245   copying tests/testdata/cov.tsv -> build/lib/tests/testdata
2021-09-29T09:35:33,248   copying tests/testdata/cov_reassignment.tsv -> build/lib/tests/testdata
2021-09-29T09:35:33,269   copying tests/testdata/coverages.tsv -> build/lib/tests/testdata
2021-09-29T09:35:33,272   copying tests/testdata/mappability.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,274   copying tests/testdata/mappability.eq.1.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,276   copying tests/testdata/matchscores.tsv -> build/lib/tests/testdata
2021-09-29T09:35:33,279   copying tests/testdata/merged.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,281   copying tests/testdata/meta.tsv -> build/lib/tests/testdata
2021-09-29T09:35:33,283   copying tests/testdata/panel1.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,287   copying tests/testdata/panel2.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,290   copying tests/testdata/reassignment_p1_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T09:35:33,292   copying tests/testdata/reassignment_p2_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T09:35:33,295   copying tests/testdata/reassignment_union.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,298   copying tests/testdata/reference.fa -> build/lib/tests/testdata
2021-09-29T09:35:33,301   copying tests/testdata/reference.fa.fai -> build/lib/tests/testdata
2021-09-29T09:35:33,304   copying tests/testdata/sample01.rtbed -> build/lib/tests/testdata
2021-09-29T09:35:33,306   copying tests/testdata/sample02.rtbed -> build/lib/tests/testdata
2021-09-29T09:35:33,309   copying tests/testdata/sample03.rtbed -> build/lib/tests/testdata
2021-09-29T09:35:33,311   copying tests/testdata/small.bam -> build/lib/tests/testdata
2021-09-29T09:35:33,316   copying tests/testdata/small.bam.bai -> build/lib/tests/testdata
2021-09-29T09:35:33,321   copying tests/testdata/small.rtbed -> build/lib/tests/testdata
2021-09-29T09:35:33,323   copying tests/testdata/targets.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,325   copying tests/testdata/test_merge_bed_input.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,327   copying tests/testdata/test_merge_bed_output.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,330   copying tests/testdata/test_merge_beds_input_0.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,332   copying tests/testdata/test_merge_beds_input_1.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,333   copying tests/testdata/test_merge_beds_output.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,335   copying tests/testdata/test_reassign_meta.tsv -> build/lib/tests/testdata
2021-09-29T09:35:33,337   copying tests/testdata/test_reassign_panel0.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,339   copying tests/testdata/test_reassign_panel1.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,341   copying tests/testdata/test_reassign_small_0.bam -> build/lib/tests/testdata
2021-09-29T09:35:33,346   copying tests/testdata/test_reassign_small_0.bam.bai -> build/lib/tests/testdata
2021-09-29T09:35:33,352   copying tests/testdata/test_reassign_small_1.bam -> build/lib/tests/testdata
2021-09-29T09:35:33,357   copying tests/testdata/test_reassign_small_1.bam.bai -> build/lib/tests/testdata
2021-09-29T09:35:33,362   copying tests/testdata/test_reassignment_coverages.tsv -> build/lib/tests/testdata
2021-09-29T09:35:33,364   copying tests/testdata/test_reassignment_p1_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T09:35:33,366   copying tests/testdata/test_reassignment_p2_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T09:35:33,368   copying tests/testdata/test_reassignment_ref.fa -> build/lib/tests/testdata
2021-09-29T09:35:33,371   copying tests/testdata/test_reassignment_ref.fa.fai -> build/lib/tests/testdata
2021-09-29T09:35:33,373   copying tests/testdata/test_reassignment_union.bed -> build/lib/tests/testdata
2021-09-29T09:35:33,375   creating build/lib/tests/testdata/.snakemake
2021-09-29T09:35:33,376   creating build/lib/tests/testdata/.snakemake/metadata
2021-09-29T09:35:33,377   copying tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y= -> build/lib/tests/testdata/.snakemake/metadata
2021-09-29T09:35:33,379   creating build/lib/tests/testdata/covs
2021-09-29T09:35:33,380   copying tests/testdata/covs/test_reassign_small_0.rtbed -> build/lib/tests/testdata/covs
2021-09-29T09:35:33,382   copying tests/testdata/covs/test_reassign_small_1.rtbed -> build/lib/tests/testdata/covs
2021-09-29T09:35:33,384   creating build/lib/tests/testdata/logs
2021-09-29T09:35:33,385   copying tests/testdata/logs/merge_coverages.log -> build/lib/tests/testdata/logs
2021-09-29T09:35:33,387   creating build/lib/tests/testdata/logs/coverages
2021-09-29T09:35:33,388   copying tests/testdata/logs/coverages/test_reassign_small_0.log -> build/lib/tests/testdata/logs/coverages
2021-09-29T09:35:33,390   copying tests/testdata/logs/coverages/test_reassign_small_1.log -> build/lib/tests/testdata/logs/coverages
2021-09-29T09:35:33,392   creating build/lib/tests/testdata/sge_log
2021-09-29T09:35:33,392   copying tests/testdata/sge_log/bash-3828326.log -> build/lib/tests/testdata/sge_log
2021-09-29T09:35:33,395   copying tests/testdata/sge_log/bash-3828327.log -> build/lib/tests/testdata/sge_log
2021-09-29T09:35:33,397   copying tests/testdata/sge_log/bash-3828329.log -> build/lib/tests/testdata/sge_log
2021-09-29T09:35:33,399   creating build/lib/clearCNV/workflow
2021-09-29T09:35:33,400   copying clearCNV/workflow/Snakefile_cnv_calling -> build/lib/clearCNV/workflow
2021-09-29T09:35:33,403   copying clearCNV/workflow/Snakefile_reassignment -> build/lib/clearCNV/workflow
2021-09-29T09:35:33,405   copying clearCNV/workflow/bih_cluster.json -> build/lib/clearCNV/workflow
2021-09-29T09:35:33,407   copying clearCNV/workflow/config_cnv_calling.yml -> build/lib/clearCNV/workflow
2021-09-29T09:35:33,410   copying clearCNV/workflow/config_reassignment.yml -> build/lib/clearCNV/workflow
2021-09-29T09:35:33,412   creating build/lib/clearCNV/viz_reassignment/assets
2021-09-29T09:35:33,413   copying clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/lib/clearCNV/viz_reassignment/assets
2021-09-29T09:35:33,422   copying clearCNV/viz_reassignment/assets/clear-cnv.css -> build/lib/clearCNV/viz_reassignment/assets
2021-09-29T09:35:33,424   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome
2021-09-29T09:35:33,424   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T09:35:33,425   copying clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T09:35:33,430   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,431   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,437   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,456   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,462   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,467   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,471   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,474   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,480   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,484   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,487   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,490   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,497   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,521   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,528   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,533   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,540   UPDATING build/lib/clearCNV/_version.py
2021-09-29T09:35:33,541   set build/lib/clearCNV/_version.py to '0.304'
2021-09-29T09:35:33,546   installing to build/bdist.linux-armv7l/wheel
2021-09-29T09:35:33,547   running install
2021-09-29T09:35:33,548   running install_lib
2021-09-29T09:35:33,552   creating build/bdist.linux-armv7l
2021-09-29T09:35:33,553   creating build/bdist.linux-armv7l/wheel
2021-09-29T09:35:33,554   creating build/bdist.linux-armv7l/wheel/tests
2021-09-29T09:35:33,555   copying build/lib/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/tests
2021-09-29T09:35:33,559   creating build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,560   copying build/lib/tests/testdata/small.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,564   copying build/lib/tests/testdata/bedfile_alt.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,566   copying build/lib/tests/testdata/test_reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,568   copying build/lib/tests/testdata/merged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,570   copying build/lib/tests/testdata/small.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,572   copying build/lib/tests/testdata/cov_reassignment.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,593   copying build/lib/tests/testdata/test_reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,595   copying build/lib/tests/testdata/reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,597   copying build/lib/tests/testdata/reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,600   copying build/lib/tests/testdata/coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,602   copying build/lib/tests/testdata/mappability.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,604   copying build/lib/tests/testdata/test_reassignment_ref.fa -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,606   copying build/lib/tests/testdata/panel2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,609   copying build/lib/tests/testdata/panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,612   copying build/lib/tests/testdata/test_reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,614   copying build/lib/tests/testdata/test_reassign_meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,616   copying build/lib/tests/testdata/mappability.eq.1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,618   copying build/lib/tests/testdata/test_reassign_small_0.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,623   copying build/lib/tests/testdata/test_reassign_panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,625   copying build/lib/tests/testdata/GC_annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,627   copying build/lib/tests/testdata/matchscores.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,630   copying build/lib/tests/testdata/test_merge_bed_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,632   copying build/lib/tests/testdata/targets.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,634   copying build/lib/tests/testdata/test_merge_beds_input_0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,635   copying build/lib/tests/testdata/test_reassignment_ref.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,638   creating build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T09:35:33,639   copying build/lib/tests/testdata/sge_log/bash-3828327.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T09:35:33,641   copying build/lib/tests/testdata/sge_log/bash-3828326.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T09:35:33,643   copying build/lib/tests/testdata/sge_log/bash-3828329.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T09:35:33,645   copying build/lib/tests/testdata/reference.fa -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,648   copying build/lib/tests/testdata/sample02.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,650   copying build/lib/tests/testdata/test_reassign_small_0.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,654   copying build/lib/tests/testdata/allbams.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,656   copying build/lib/tests/testdata/sample03.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,658   copying build/lib/tests/testdata/small.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,662   copying build/lib/tests/testdata/test_reassignment_coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,664   copying build/lib/tests/testdata/annotations2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,666   copying build/lib/tests/testdata/sample01.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,669   creating build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake
2021-09-29T09:35:33,670   creating build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake/metadata
2021-09-29T09:35:33,671   copying build/lib/tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y= -> build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake/metadata
2021-09-29T09:35:33,673   copying build/lib/tests/testdata/allmerged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,675   copying build/lib/tests/testdata/test_merge_beds_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,677   creating build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-09-29T09:35:33,678   copying build/lib/tests/testdata/covs/test_reassign_small_1.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-09-29T09:35:33,680   copying build/lib/tests/testdata/covs/test_reassign_small_0.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-09-29T09:35:33,682   copying build/lib/tests/testdata/reference.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,684   copying build/lib/tests/testdata/test_merge_beds_input_1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,686   copying build/lib/tests/testdata/test_reassign_small_1.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,691   copying build/lib/tests/testdata/cov.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,694   creating build/bdist.linux-armv7l/wheel/tests/testdata/logs
2021-09-29T09:35:33,695   creating build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-09-29T09:35:33,696   copying build/lib/tests/testdata/logs/coverages/test_reassign_small_0.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-09-29T09:35:33,698   copying build/lib/tests/testdata/logs/coverages/test_reassign_small_1.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-09-29T09:35:33,699   copying build/lib/tests/testdata/logs/merge_coverages.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs
2021-09-29T09:35:33,701   copying build/lib/tests/testdata/test_merge_bed_input.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,703   copying build/lib/tests/testdata/annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,705   copying build/lib/tests/testdata/bedfile.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,707   copying build/lib/tests/testdata/meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,709   copying build/lib/tests/testdata/reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,711   copying build/lib/tests/testdata/test_reassign_small_1.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,715   copying build/lib/tests/testdata/test_reassign_panel0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,717   copying build/lib/tests/testdata/bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T09:35:33,719   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2021-09-29T09:35:33,722   creating build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,723   copying build/lib/clearCNV/cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,725   copying build/lib/clearCNV/misc.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,728   copying build/lib/clearCNV/__main__.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,731   copying build/lib/clearCNV/workflow_cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,734   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,735   copying build/lib/clearCNV/viz_reassignment/store.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,738   copying build/lib/clearCNV/viz_reassignment/app.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,741   copying build/lib/clearCNV/viz_reassignment/cache.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,743   copying build/lib/clearCNV/viz_reassignment/ui_plots.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,745   copying build/lib/clearCNV/viz_reassignment/ui.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,748   copying build/lib/clearCNV/viz_reassignment/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,749   copying build/lib/clearCNV/viz_reassignment/settings.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,752   copying build/lib/clearCNV/viz_reassignment/callbacks.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T09:35:33,754   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-09-29T09:35:33,755   copying build/lib/clearCNV/viz_reassignment/assets/clear-cnv.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-09-29T09:35:33,758   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome
2021-09-29T09:35:33,760   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T09:35:33,761   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T09:35:33,767   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,768   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,777   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,786   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,793   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,799   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,803   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,808   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,813   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,816   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,819   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,824   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,826   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,834   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,836   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,862   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T09:35:33,881   copying build/lib/clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-09-29T09:35:33,888   copying build/lib/clearCNV/matchscores.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,890   creating build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T09:35:33,891   copying build/lib/clearCNV/workflow/Snakefile_reassignment -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T09:35:33,893   copying build/lib/clearCNV/workflow/bih_cluster.json -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T09:35:33,895   copying build/lib/clearCNV/workflow/Snakefile_cnv_calling -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T09:35:33,897   copying build/lib/clearCNV/workflow/config_cnv_calling.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T09:35:33,899   copying build/lib/clearCNV/workflow/config_reassignment.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T09:35:33,901   copying build/lib/clearCNV/_version.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,903   copying build/lib/clearCNV/cnv_arithmetics.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,905   copying build/lib/clearCNV/visualize_scores.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,908   copying build/lib/clearCNV/workflow_reassignment.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,910   copying build/lib/clearCNV/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,912   copying build/lib/clearCNV/util.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T09:35:33,915   running install_egg_info
2021-09-29T09:35:33,925   Copying clearCNV.egg-info to build/bdist.linux-armv7l/wheel/clearCNV-0.304-py3.7.egg-info
2021-09-29T09:35:33,942   running install_scripts
2021-09-29T09:35:34,042   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-09-29T09:35:34,046   creating build/bdist.linux-armv7l/wheel/clearCNV-0.304.dist-info/WHEEL
2021-09-29T09:35:34,049   creating '/tmp/pip-wheel-x0u3rbda/clearCNV-0.304-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-09-29T09:35:34,051   adding 'clearCNV/__init__.py'
2021-09-29T09:35:34,054   adding 'clearCNV/__main__.py'
2021-09-29T09:35:34,056   adding 'clearCNV/_version.py'
2021-09-29T09:35:34,058   adding 'clearCNV/cnv_arithmetics.py'
2021-09-29T09:35:34,060   adding 'clearCNV/cnv_calling.py'
2021-09-29T09:35:34,062   adding 'clearCNV/matchscores.py'
2021-09-29T09:35:34,064   adding 'clearCNV/misc.py'
2021-09-29T09:35:34,066   adding 'clearCNV/util.py'
2021-09-29T09:35:34,068   adding 'clearCNV/visualize_scores.py'
2021-09-29T09:35:34,069   adding 'clearCNV/workflow_cnv_calling.py'
2021-09-29T09:35:34,070   adding 'clearCNV/workflow_reassignment.py'
2021-09-29T09:35:34,072   adding 'clearCNV/viz_reassignment/__init__.py'
2021-09-29T09:35:34,073   adding 'clearCNV/viz_reassignment/app.py'
2021-09-29T09:35:34,075   adding 'clearCNV/viz_reassignment/cache.py'
2021-09-29T09:35:34,076   adding 'clearCNV/viz_reassignment/callbacks.py'
2021-09-29T09:35:34,077   adding 'clearCNV/viz_reassignment/settings.py'
2021-09-29T09:35:34,079   adding 'clearCNV/viz_reassignment/store.py'
2021-09-29T09:35:34,081   adding 'clearCNV/viz_reassignment/ui.py'
2021-09-29T09:35:34,082   adding 'clearCNV/viz_reassignment/ui_plots.py'
2021-09-29T09:35:34,096   adding 'clearCNV/viz_reassignment/assets/bootstrap.min.css'
2021-09-29T09:35:34,099   adding 'clearCNV/viz_reassignment/assets/clear-cnv.css'
2021-09-29T09:35:34,106   adding 'clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css'
2021-09-29T09:35:34,130   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot'
2021-09-29T09:35:34,315   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg'
2021-09-29T09:35:34,343   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf'
2021-09-29T09:35:34,354   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff'
2021-09-29T09:35:34,363   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2'
2021-09-29T09:35:34,368   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot'
2021-09-29T09:35:34,392   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg'
2021-09-29T09:35:34,398   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf'
2021-09-29T09:35:34,401   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff'
2021-09-29T09:35:34,403   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2'
2021-09-29T09:35:34,435   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot'
2021-09-29T09:35:34,582   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg'
2021-09-29T09:35:34,619   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf'
2021-09-29T09:35:34,631   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff'
2021-09-29T09:35:34,640   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2'
2021-09-29T09:35:34,643   adding 'clearCNV/workflow/Snakefile_cnv_calling'
2021-09-29T09:35:34,644   adding 'clearCNV/workflow/Snakefile_reassignment'
2021-09-29T09:35:34,646   adding 'clearCNV/workflow/bih_cluster.json'
2021-09-29T09:35:34,647   adding 'clearCNV/workflow/config_cnv_calling.yml'
2021-09-29T09:35:34,648   adding 'clearCNV/workflow/config_reassignment.yml'
2021-09-29T09:35:34,651   adding 'tests/__init__.py'
2021-09-29T09:35:34,652   adding 'tests/test_misc.py'
2021-09-29T09:35:34,655   adding 'tests/testdata/GC_annotations.bed'
2021-09-29T09:35:34,656   adding 'tests/testdata/allbams.txt'
2021-09-29T09:35:34,657   adding 'tests/testdata/allmerged.bed'
2021-09-29T09:35:34,658   adding 'tests/testdata/annotations.bed'
2021-09-29T09:35:34,660   adding 'tests/testdata/annotations2.bed'
2021-09-29T09:35:34,661   adding 'tests/testdata/bamfiles.txt'
2021-09-29T09:35:34,662   adding 'tests/testdata/bedfile.bed'
2021-09-29T09:35:34,663   adding 'tests/testdata/bedfile_alt.bed'
2021-09-29T09:35:34,665   adding 'tests/testdata/cov.tsv'
2021-09-29T09:35:34,898   adding 'tests/testdata/cov_reassignment.tsv'
2021-09-29T09:35:34,905   adding 'tests/testdata/coverages.tsv'
2021-09-29T09:35:34,906   adding 'tests/testdata/mappability.bed'
2021-09-29T09:35:34,907   adding 'tests/testdata/mappability.eq.1.bed'
2021-09-29T09:35:34,910   adding 'tests/testdata/matchscores.tsv'
2021-09-29T09:35:34,911   adding 'tests/testdata/merged.bed'
2021-09-29T09:35:34,912   adding 'tests/testdata/meta.tsv'
2021-09-29T09:35:34,915   adding 'tests/testdata/panel1.bed'
2021-09-29T09:35:34,918   adding 'tests/testdata/panel2.bed'
2021-09-29T09:35:34,919   adding 'tests/testdata/reassignment_p1_bamfiles.txt'
2021-09-29T09:35:34,920   adding 'tests/testdata/reassignment_p2_bamfiles.txt'
2021-09-29T09:35:34,924   adding 'tests/testdata/reassignment_union.bed'
2021-09-29T09:35:34,927   adding 'tests/testdata/reference.fa'
2021-09-29T09:35:34,928   adding 'tests/testdata/reference.fa.fai'
2021-09-29T09:35:34,929   adding 'tests/testdata/sample01.rtbed'
2021-09-29T09:35:34,931   adding 'tests/testdata/sample02.rtbed'
2021-09-29T09:35:34,932   adding 'tests/testdata/sample03.rtbed'
2021-09-29T09:35:34,940   adding 'tests/testdata/small.bam'
2021-09-29T09:35:34,943   adding 'tests/testdata/small.bam.bai'
2021-09-29T09:35:34,945   adding 'tests/testdata/small.rtbed'
2021-09-29T09:35:34,946   adding 'tests/testdata/targets.bed'
2021-09-29T09:35:34,947   adding 'tests/testdata/test_merge_bed_input.bed'
2021-09-29T09:35:34,948   adding 'tests/testdata/test_merge_bed_output.bed'
2021-09-29T09:35:34,950   adding 'tests/testdata/test_merge_beds_input_0.bed'
2021-09-29T09:35:34,951   adding 'tests/testdata/test_merge_beds_input_1.bed'
2021-09-29T09:35:34,952   adding 'tests/testdata/test_merge_beds_output.bed'
2021-09-29T09:35:34,953   adding 'tests/testdata/test_reassign_meta.tsv'
2021-09-29T09:35:34,954   adding 'tests/testdata/test_reassign_panel0.bed'
2021-09-29T09:35:34,955   adding 'tests/testdata/test_reassign_panel1.bed'
2021-09-29T09:35:34,963   adding 'tests/testdata/test_reassign_small_0.bam'
2021-09-29T09:35:34,966   adding 'tests/testdata/test_reassign_small_0.bam.bai'
2021-09-29T09:35:34,975   adding 'tests/testdata/test_reassign_small_1.bam'
2021-09-29T09:35:34,979   adding 'tests/testdata/test_reassign_small_1.bam.bai'
2021-09-29T09:35:34,980   adding 'tests/testdata/test_reassignment_coverages.tsv'
2021-09-29T09:35:34,981   adding 'tests/testdata/test_reassignment_p1_bamfiles.txt'
2021-09-29T09:35:34,983   adding 'tests/testdata/test_reassignment_p2_bamfiles.txt'
2021-09-29T09:35:34,985   adding 'tests/testdata/test_reassignment_ref.fa'
2021-09-29T09:35:34,987   adding 'tests/testdata/test_reassignment_ref.fa.fai'
2021-09-29T09:35:34,988   adding 'tests/testdata/test_reassignment_union.bed'
2021-09-29T09:35:34,990   adding 'tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y='
2021-09-29T09:35:34,992   adding 'tests/testdata/covs/test_reassign_small_0.rtbed'
2021-09-29T09:35:34,993   adding 'tests/testdata/covs/test_reassign_small_1.rtbed'
2021-09-29T09:35:34,995   adding 'tests/testdata/logs/merge_coverages.log'
2021-09-29T09:35:34,996   adding 'tests/testdata/logs/coverages/test_reassign_small_0.log'
2021-09-29T09:35:34,997   adding 'tests/testdata/logs/coverages/test_reassign_small_1.log'
2021-09-29T09:35:34,999   adding 'tests/testdata/sge_log/bash-3828326.log'
2021-09-29T09:35:35,000   adding 'tests/testdata/sge_log/bash-3828327.log'
2021-09-29T09:35:35,002   adding 'tests/testdata/sge_log/bash-3828329.log'
2021-09-29T09:35:35,003   adding 'clearCNV-0.304.dist-info/LICENSE'
2021-09-29T09:35:35,005   adding 'clearCNV-0.304.dist-info/METADATA'
2021-09-29T09:35:35,006   adding 'clearCNV-0.304.dist-info/WHEEL'
2021-09-29T09:35:35,007   adding 'clearCNV-0.304.dist-info/entry_points.txt'
2021-09-29T09:35:35,008   adding 'clearCNV-0.304.dist-info/top_level.txt'
2021-09-29T09:35:35,009   adding 'clearCNV-0.304.dist-info/RECORD'
2021-09-29T09:35:35,038   removing build/bdist.linux-armv7l/wheel
2021-09-29T09:35:35,151   Building wheel for clearcnv (setup.py): finished with status 'done'
2021-09-29T09:35:35,181   Created wheel for clearcnv: filename=clearCNV-0.304-py2.py3-none-any.whl size=1818875 sha256=1238674b82c2d9b28ae7dc7bec816402bb8a3e33fd1c6217088c67caf7a0593f
2021-09-29T09:35:35,181   Stored in directory: /tmp/pip-ephem-wheel-cache-2v3cnyjo/wheels/51/b8/aa/4be2a8f478c11cc17d064c83b49dd134e26ca3f0a42d0d247d
2021-09-29T09:35:35,195 Successfully built clearcnv
2021-09-29T09:35:35,263 Removed build tracker: '/tmp/pip-req-tracker-55tx50e2'