2021-09-29T11:00:37,134 Created temporary directory: /tmp/pip-ephem-wheel-cache-uh1a8lpe
2021-09-29T11:00:37,137 Created temporary directory: /tmp/pip-req-tracker-jwc_oqj7
2021-09-29T11:00:37,138 Initialized build tracking at /tmp/pip-req-tracker-jwc_oqj7
2021-09-29T11:00:37,138 Created build tracker: /tmp/pip-req-tracker-jwc_oqj7
2021-09-29T11:00:37,138 Entered build tracker: /tmp/pip-req-tracker-jwc_oqj7
2021-09-29T11:00:37,138 Created temporary directory: /tmp/pip-wheel-_fat2ju2
2021-09-29T11:00:37,172 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-09-29T11:00:37,175 2 location(s) to search for versions of clearcnv:
2021-09-29T11:00:37,175 * https://pypi.org/simple/clearcnv/
2021-09-29T11:00:37,175 * https://www.piwheels.org/simple/clearcnv/
2021-09-29T11:00:37,175 Fetching project page and analyzing links: https://pypi.org/simple/clearcnv/
2021-09-29T11:00:37,176 Getting page https://pypi.org/simple/clearcnv/
2021-09-29T11:00:37,178 Found index url https://pypi.org/simple
2021-09-29T11:00:37,266   Found link https://files.pythonhosted.org/packages/9e/56/2bd290685ae8b425115d75335e1d227330c4028ba6914a325e2963a4dc0f/clearCNV-0.303.tar.gz#sha256=df5bb11cec7f1609ac6c82710262c9201cc1f4c59de046f6340e6e00aa67e3ec (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.303
2021-09-29T11:00:37,267   Found link https://files.pythonhosted.org/packages/8d/5e/f012a8083dacf2c6a3f87fc83e17f838151d9c33ecaa83ab9df420f87123/clearCNV-0.304.tar.gz#sha256=4e9096332b940fec1478940b43e335ca100f27bc11535277742358c17b2f35ec (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.304
2021-09-29T11:00:37,267   Found link https://files.pythonhosted.org/packages/3f/ab/7fee647f1845616dff4d54d29623440dbbfc994b7fd4d6e220100bbae742/clearCNV-0.305.tar.gz#sha256=8c1605c5af30c5af59ba41029d8351341051fd9e8a63c3b2f3be8dd4a08bf57a (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.305
2021-09-29T11:00:37,268 Fetching project page and analyzing links: https://www.piwheels.org/simple/clearcnv/
2021-09-29T11:00:37,268 Getting page https://www.piwheels.org/simple/clearcnv/
2021-09-29T11:00:37,269 Found index url https://www.piwheels.org/simple
2021-09-29T11:00:37,375   Skipping link: No binaries permitted for clearcnv: https://www.piwheels.org/simple/clearcnv/clearCNV-0.303-py2.py3-none-any.whl#sha256=d7403657554d9d98e0cd60f6fdafe886551a3dfb6d04d99057bfb47166164b7f (from https://www.piwheels.org/simple/clearcnv/) (requires-python:>=3.7)
2021-09-29T11:00:37,375   Skipping link: No binaries permitted for clearcnv: https://www.piwheels.org/simple/clearcnv/clearCNV-0.304-py2.py3-none-any.whl#sha256=1238674b82c2d9b28ae7dc7bec816402bb8a3e33fd1c6217088c67caf7a0593f (from https://www.piwheels.org/simple/clearcnv/) (requires-python:>=3.7)
2021-09-29T11:00:37,376 Skipping link: not a file: https://www.piwheels.org/simple/clearcnv/
2021-09-29T11:00:37,376 Skipping link: not a file: https://pypi.org/simple/clearcnv/
2021-09-29T11:00:37,392 Given no hashes to check 1 links for project 'clearcnv': discarding no candidates
2021-09-29T11:00:37,406 Collecting clearcnv==0.305
2021-09-29T11:00:37,408   Created temporary directory: /tmp/pip-unpack-wewm_s95
2021-09-29T11:00:37,691   Downloading clearCNV-0.305.tar.gz (1.8 MB)
2021-09-29T11:00:38,347   Added clearcnv==0.305 from https://files.pythonhosted.org/packages/3f/ab/7fee647f1845616dff4d54d29623440dbbfc994b7fd4d6e220100bbae742/clearCNV-0.305.tar.gz#sha256=8c1605c5af30c5af59ba41029d8351341051fd9e8a63c3b2f3be8dd4a08bf57a to build tracker '/tmp/pip-req-tracker-jwc_oqj7'
2021-09-29T11:00:38,348     Running setup.py (path:/tmp/pip-wheel-_fat2ju2/clearcnv_c847d30a2c62469697f6b6df06262f66/setup.py) egg_info for package clearcnv
2021-09-29T11:00:38,349     Created temporary directory: /tmp/pip-pip-egg-info-6kvo0g74
2021-09-29T11:00:38,349     Running command python setup.py egg_info
2021-09-29T11:00:39,481     running egg_info
2021-09-29T11:00:39,483     creating /tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info
2021-09-29T11:00:39,484     writing /tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/PKG-INFO
2021-09-29T11:00:39,487     writing dependency_links to /tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/dependency_links.txt
2021-09-29T11:00:39,489     writing entry points to /tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/entry_points.txt
2021-09-29T11:00:39,490     writing requirements to /tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/requires.txt
2021-09-29T11:00:39,491     writing top-level names to /tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/top_level.txt
2021-09-29T11:00:39,493     writing manifest file '/tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/SOURCES.txt'
2021-09-29T11:00:39,501     reading manifest file '/tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/SOURCES.txt'
2021-09-29T11:00:39,503     reading manifest template 'MANIFEST.in'
2021-09-29T11:00:39,504     warning: no files found matching 'AUTHORS.rst'
2021-09-29T11:00:39,505     warning: no files found matching 'CONTRIBUTING.rst'
2021-09-29T11:00:39,543     warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-29T11:00:39,543     warning: no previously-included files matching '*.py[co]' found under directory '*'
2021-09-29T11:00:39,545     warning: no previously-included files matching '*.sh' found under directory '*'
2021-09-29T11:00:39,545     warning: no files found matching '*.rst' under directory 'docs'
2021-09-29T11:00:39,546     warning: no files found matching 'conf.py' under directory 'docs'
2021-09-29T11:00:39,546     warning: no files found matching 'Makefile' under directory 'docs'
2021-09-29T11:00:39,546     warning: no files found matching 'make.bat' under directory 'docs'
2021-09-29T11:00:39,546     warning: no files found matching '*.jpg' under directory 'docs'
2021-09-29T11:00:39,546     warning: no files found matching '*.png' under directory 'docs'
2021-09-29T11:00:39,547     warning: no files found matching '*.gif' under directory 'docs'
2021-09-29T11:00:39,569     warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T11:00:39,578     warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T11:00:39,630     warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static'
2021-09-29T11:00:39,642     adding license file 'LICENSE'
2021-09-29T11:00:39,649     writing manifest file '/tmp/pip-pip-egg-info-6kvo0g74/clearCNV.egg-info/SOURCES.txt'
2021-09-29T11:00:39,716   Source in /tmp/pip-wheel-_fat2ju2/clearcnv_c847d30a2c62469697f6b6df06262f66 has version 0.305, which satisfies requirement clearcnv==0.305 from https://files.pythonhosted.org/packages/3f/ab/7fee647f1845616dff4d54d29623440dbbfc994b7fd4d6e220100bbae742/clearCNV-0.305.tar.gz#sha256=8c1605c5af30c5af59ba41029d8351341051fd9e8a63c3b2f3be8dd4a08bf57a
2021-09-29T11:00:39,717   Removed clearcnv==0.305 from https://files.pythonhosted.org/packages/3f/ab/7fee647f1845616dff4d54d29623440dbbfc994b7fd4d6e220100bbae742/clearCNV-0.305.tar.gz#sha256=8c1605c5af30c5af59ba41029d8351341051fd9e8a63c3b2f3be8dd4a08bf57a from build tracker '/tmp/pip-req-tracker-jwc_oqj7'
2021-09-29T11:00:39,723 Created temporary directory: /tmp/pip-unpack-tmq0vly6
2021-09-29T11:00:39,724 Building wheels for collected packages: clearcnv
2021-09-29T11:00:39,729   Created temporary directory: /tmp/pip-wheel-ebofbukn
2021-09-29T11:00:39,729   Building wheel for clearcnv (setup.py): started
2021-09-29T11:00:39,730   Destination directory: /tmp/pip-wheel-ebofbukn
2021-09-29T11:00:39,730   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_fat2ju2/clearcnv_c847d30a2c62469697f6b6df06262f66/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_fat2ju2/clearcnv_c847d30a2c62469697f6b6df06262f66/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ebofbukn
2021-09-29T11:00:40,840   running bdist_wheel
2021-09-29T11:00:40,845   running build
2021-09-29T11:00:40,845   running build_py
2021-09-29T11:00:40,852   creating build
2021-09-29T11:00:40,852   creating build/lib
2021-09-29T11:00:40,853   creating build/lib/tests
2021-09-29T11:00:40,854   copying tests/test_misc.py -> build/lib/tests
2021-09-29T11:00:40,856   copying tests/__init__.py -> build/lib/tests
2021-09-29T11:00:40,858   creating build/lib/clearCNV
2021-09-29T11:00:40,859   copying clearCNV/__init__.py -> build/lib/clearCNV
2021-09-29T11:00:40,861   copying clearCNV/cnv_calling.py -> build/lib/clearCNV
2021-09-29T11:00:40,863   copying clearCNV/util.py -> build/lib/clearCNV
2021-09-29T11:00:40,866   copying clearCNV/visualize_scores.py -> build/lib/clearCNV
2021-09-29T11:00:40,868   copying clearCNV/workflow_cnv_calling.py -> build/lib/clearCNV
2021-09-29T11:00:40,870   copying clearCNV/matchscores.py -> build/lib/clearCNV
2021-09-29T11:00:40,871   copying clearCNV/workflow_reassignment.py -> build/lib/clearCNV
2021-09-29T11:00:40,873   copying clearCNV/_version.py -> build/lib/clearCNV
2021-09-29T11:00:40,875   copying clearCNV/__main__.py -> build/lib/clearCNV
2021-09-29T11:00:40,877   copying clearCNV/misc.py -> build/lib/clearCNV
2021-09-29T11:00:40,880   copying clearCNV/cnv_arithmetics.py -> build/lib/clearCNV
2021-09-29T11:00:40,884   creating build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,885   copying clearCNV/viz_reassignment/settings.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,887   copying clearCNV/viz_reassignment/app.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,889   copying clearCNV/viz_reassignment/__init__.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,891   copying clearCNV/viz_reassignment/cache.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,892   copying clearCNV/viz_reassignment/ui_plots.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,894   copying clearCNV/viz_reassignment/store.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,897   copying clearCNV/viz_reassignment/ui.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,899   copying clearCNV/viz_reassignment/callbacks.py -> build/lib/clearCNV/viz_reassignment
2021-09-29T11:00:40,901   running egg_info
2021-09-29T11:00:40,911   writing clearCNV.egg-info/PKG-INFO
2021-09-29T11:00:40,913   writing dependency_links to clearCNV.egg-info/dependency_links.txt
2021-09-29T11:00:40,915   writing entry points to clearCNV.egg-info/entry_points.txt
2021-09-29T11:00:40,916   writing requirements to clearCNV.egg-info/requires.txt
2021-09-29T11:00:40,917   writing top-level names to clearCNV.egg-info/top_level.txt
2021-09-29T11:00:40,923   reading manifest file 'clearCNV.egg-info/SOURCES.txt'
2021-09-29T11:00:40,928   reading manifest template 'MANIFEST.in'
2021-09-29T11:00:40,929   warning: no files found matching 'AUTHORS.rst'
2021-09-29T11:00:40,929   warning: no files found matching 'CONTRIBUTING.rst'
2021-09-29T11:00:40,958   warning: no previously-included files matching '__pycache__' found under directory '*'
2021-09-29T11:00:40,959   warning: no previously-included files matching '*.py[co]' found under directory '*'
2021-09-29T11:00:40,960   warning: no previously-included files matching '*.sh' found under directory '*'
2021-09-29T11:00:40,960   warning: no files found matching '*.rst' under directory 'docs'
2021-09-29T11:00:40,960   warning: no files found matching 'conf.py' under directory 'docs'
2021-09-29T11:00:40,960   warning: no files found matching 'Makefile' under directory 'docs'
2021-09-29T11:00:40,961   warning: no files found matching 'make.bat' under directory 'docs'
2021-09-29T11:00:40,961   warning: no files found matching '*.jpg' under directory 'docs'
2021-09-29T11:00:40,961   warning: no files found matching '*.png' under directory 'docs'
2021-09-29T11:00:40,961   warning: no files found matching '*.gif' under directory 'docs'
2021-09-29T11:00:40,981   warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T11:00:40,991   warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets'
2021-09-29T11:00:41,045   warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static'
2021-09-29T11:00:41,056   adding license file 'LICENSE'
2021-09-29T11:00:41,066   writing manifest file 'clearCNV.egg-info/SOURCES.txt'
2021-09-29T11:00:41,078   creating build/lib/tests/testdata
2021-09-29T11:00:41,079   copying tests/testdata/GC_annotations.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,082   copying tests/testdata/allbams.txt -> build/lib/tests/testdata
2021-09-29T11:00:41,084   copying tests/testdata/allmerged.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,086   copying tests/testdata/annotations.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,088   copying tests/testdata/annotations2.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,090   copying tests/testdata/bamfiles.txt -> build/lib/tests/testdata
2021-09-29T11:00:41,092   copying tests/testdata/bedfile.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,095   copying tests/testdata/bedfile_alt.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,097   copying tests/testdata/cov.tsv -> build/lib/tests/testdata
2021-09-29T11:00:41,100   copying tests/testdata/cov_reassignment.tsv -> build/lib/tests/testdata
2021-09-29T11:00:41,120   copying tests/testdata/coverages.tsv -> build/lib/tests/testdata
2021-09-29T11:00:41,123   copying tests/testdata/mappability.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,125   copying tests/testdata/mappability.eq.1.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,127   copying tests/testdata/matchscores.tsv -> build/lib/tests/testdata
2021-09-29T11:00:41,130   copying tests/testdata/merged.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,132   copying tests/testdata/meta.tsv -> build/lib/tests/testdata
2021-09-29T11:00:41,135   copying tests/testdata/panel1.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,138   copying tests/testdata/panel2.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,141   copying tests/testdata/reassignment_p1_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T11:00:41,143   copying tests/testdata/reassignment_p2_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T11:00:41,146   copying tests/testdata/reassignment_union.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,150   copying tests/testdata/reference.fa -> build/lib/tests/testdata
2021-09-29T11:00:41,153   copying tests/testdata/reference.fa.fai -> build/lib/tests/testdata
2021-09-29T11:00:41,155   copying tests/testdata/sample01.rtbed -> build/lib/tests/testdata
2021-09-29T11:00:41,158   copying tests/testdata/sample02.rtbed -> build/lib/tests/testdata
2021-09-29T11:00:41,160   copying tests/testdata/sample03.rtbed -> build/lib/tests/testdata
2021-09-29T11:00:41,163   copying tests/testdata/small.bam -> build/lib/tests/testdata
2021-09-29T11:00:41,168   copying tests/testdata/small.bam.bai -> build/lib/tests/testdata
2021-09-29T11:00:41,173   copying tests/testdata/small.rtbed -> build/lib/tests/testdata
2021-09-29T11:00:41,175   copying tests/testdata/targets.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,178   copying tests/testdata/test_merge_bed_input.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,180   copying tests/testdata/test_merge_bed_output.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,182   copying tests/testdata/test_merge_beds_input_0.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,185   copying tests/testdata/test_merge_beds_input_1.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,187   copying tests/testdata/test_merge_beds_output.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,190   copying tests/testdata/test_reassign_meta.tsv -> build/lib/tests/testdata
2021-09-29T11:00:41,193   copying tests/testdata/test_reassign_panel0.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,195   copying tests/testdata/test_reassign_panel1.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,198   copying tests/testdata/test_reassign_small_0.bam -> build/lib/tests/testdata
2021-09-29T11:00:41,203   copying tests/testdata/test_reassign_small_0.bam.bai -> build/lib/tests/testdata
2021-09-29T11:00:41,209   copying tests/testdata/test_reassign_small_1.bam -> build/lib/tests/testdata
2021-09-29T11:00:41,214   copying tests/testdata/test_reassign_small_1.bam.bai -> build/lib/tests/testdata
2021-09-29T11:00:41,219   copying tests/testdata/test_reassignment_coverages.tsv -> build/lib/tests/testdata
2021-09-29T11:00:41,221   copying tests/testdata/test_reassignment_p1_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T11:00:41,224   copying tests/testdata/test_reassignment_p2_bamfiles.txt -> build/lib/tests/testdata
2021-09-29T11:00:41,226   copying tests/testdata/test_reassignment_ref.fa -> build/lib/tests/testdata
2021-09-29T11:00:41,229   copying tests/testdata/test_reassignment_ref.fa.fai -> build/lib/tests/testdata
2021-09-29T11:00:41,232   copying tests/testdata/test_reassignment_union.bed -> build/lib/tests/testdata
2021-09-29T11:00:41,234   creating build/lib/tests/testdata/.snakemake
2021-09-29T11:00:41,235   creating build/lib/tests/testdata/.snakemake/metadata
2021-09-29T11:00:41,236   copying tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y= -> build/lib/tests/testdata/.snakemake/metadata
2021-09-29T11:00:41,239   creating build/lib/tests/testdata/covs
2021-09-29T11:00:41,239   copying tests/testdata/covs/test_reassign_small_0.rtbed -> build/lib/tests/testdata/covs
2021-09-29T11:00:41,242   copying tests/testdata/covs/test_reassign_small_1.rtbed -> build/lib/tests/testdata/covs
2021-09-29T11:00:41,244   creating build/lib/tests/testdata/logs
2021-09-29T11:00:41,245   copying tests/testdata/logs/merge_coverages.log -> build/lib/tests/testdata/logs
2021-09-29T11:00:41,248   creating build/lib/tests/testdata/logs/coverages
2021-09-29T11:00:41,249   copying tests/testdata/logs/coverages/test_reassign_small_0.log -> build/lib/tests/testdata/logs/coverages
2021-09-29T11:00:41,251   copying tests/testdata/logs/coverages/test_reassign_small_1.log -> build/lib/tests/testdata/logs/coverages
2021-09-29T11:00:41,253   creating build/lib/tests/testdata/sge_log
2021-09-29T11:00:41,254   copying tests/testdata/sge_log/bash-3828326.log -> build/lib/tests/testdata/sge_log
2021-09-29T11:00:41,256   copying tests/testdata/sge_log/bash-3828327.log -> build/lib/tests/testdata/sge_log
2021-09-29T11:00:41,259   copying tests/testdata/sge_log/bash-3828329.log -> build/lib/tests/testdata/sge_log
2021-09-29T11:00:41,261   creating build/lib/clearCNV/workflow
2021-09-29T11:00:41,262   copying clearCNV/workflow/Snakefile_cnv_calling -> build/lib/clearCNV/workflow
2021-09-29T11:00:41,265   copying clearCNV/workflow/Snakefile_reassignment -> build/lib/clearCNV/workflow
2021-09-29T11:00:41,268   copying clearCNV/workflow/bih_cluster.json -> build/lib/clearCNV/workflow
2021-09-29T11:00:41,270   copying clearCNV/workflow/config_cnv_calling.yml -> build/lib/clearCNV/workflow
2021-09-29T11:00:41,273   copying clearCNV/workflow/config_reassignment.yml -> build/lib/clearCNV/workflow
2021-09-29T11:00:41,275   creating build/lib/clearCNV/viz_reassignment/assets
2021-09-29T11:00:41,276   copying clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/lib/clearCNV/viz_reassignment/assets
2021-09-29T11:00:41,283   copying clearCNV/viz_reassignment/assets/clear-cnv.css -> build/lib/clearCNV/viz_reassignment/assets
2021-09-29T11:00:41,286   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome
2021-09-29T11:00:41,286   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T11:00:41,288   copying clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T11:00:41,293   creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,294   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,303   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,325   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,331   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,335   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,340   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,343   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,350   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,353   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,356   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,359   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,367   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,392   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,401   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,406   copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,415   UPDATING build/lib/clearCNV/_version.py
2021-09-29T11:00:41,417   set build/lib/clearCNV/_version.py to '0.305'
2021-09-29T11:00:41,422   installing to build/bdist.linux-armv7l/wheel
2021-09-29T11:00:41,422   running install
2021-09-29T11:00:41,423   running install_lib
2021-09-29T11:00:41,427   creating build/bdist.linux-armv7l
2021-09-29T11:00:41,428   creating build/bdist.linux-armv7l/wheel
2021-09-29T11:00:41,429   creating build/bdist.linux-armv7l/wheel/tests
2021-09-29T11:00:41,430   copying build/lib/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/tests
2021-09-29T11:00:41,433   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2021-09-29T11:00:41,436   creating build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,437   copying build/lib/tests/testdata/test_merge_beds_input_1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,439   copying build/lib/tests/testdata/mappability.eq.1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,441   copying build/lib/tests/testdata/sample01.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,442   copying build/lib/tests/testdata/annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,444   copying build/lib/tests/testdata/panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,447   copying build/lib/tests/testdata/sample02.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,449   copying build/lib/tests/testdata/reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,451   copying build/lib/tests/testdata/test_merge_bed_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,453   copying build/lib/tests/testdata/small.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,457   copying build/lib/tests/testdata/targets.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,459   copying build/lib/tests/testdata/reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,461   copying build/lib/tests/testdata/allbams.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,463   copying build/lib/tests/testdata/mappability.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,465   creating build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T11:00:41,466   copying build/lib/tests/testdata/sge_log/bash-3828327.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T11:00:41,469   copying build/lib/tests/testdata/sge_log/bash-3828326.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T11:00:41,471   copying build/lib/tests/testdata/sge_log/bash-3828329.log -> build/bdist.linux-armv7l/wheel/tests/testdata/sge_log
2021-09-29T11:00:41,473   copying build/lib/tests/testdata/test_reassign_small_0.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,477   copying build/lib/tests/testdata/merged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,479   copying build/lib/tests/testdata/cov_reassignment.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,501   copying build/lib/tests/testdata/test_reassign_small_0.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,505   copying build/lib/tests/testdata/panel2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,508   copying build/lib/tests/testdata/small.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,510   copying build/lib/tests/testdata/reference.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,512   copying build/lib/tests/testdata/test_reassign_meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,514   copying build/lib/tests/testdata/meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,516   creating build/bdist.linux-armv7l/wheel/tests/testdata/logs
2021-09-29T11:00:41,518   creating build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-09-29T11:00:41,519   copying build/lib/tests/testdata/logs/coverages/test_reassign_small_1.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-09-29T11:00:41,521   copying build/lib/tests/testdata/logs/coverages/test_reassign_small_0.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs/coverages
2021-09-29T11:00:41,522   copying build/lib/tests/testdata/logs/merge_coverages.log -> build/bdist.linux-armv7l/wheel/tests/testdata/logs
2021-09-29T11:00:41,524   copying build/lib/tests/testdata/test_reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,526   copying build/lib/tests/testdata/test_reassignment_ref.fa -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,529   copying build/lib/tests/testdata/GC_annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,531   copying build/lib/tests/testdata/reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,534   copying build/lib/tests/testdata/test_reassign_panel0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,536   copying build/lib/tests/testdata/bedfile.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,538   copying build/lib/tests/testdata/test_reassign_small_1.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,542   copying build/lib/tests/testdata/test_reassignment_ref.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,544   copying build/lib/tests/testdata/cov.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,547   copying build/lib/tests/testdata/allmerged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,548   copying build/lib/tests/testdata/small.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,553   creating build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-09-29T11:00:41,554   copying build/lib/tests/testdata/covs/test_reassign_small_1.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-09-29T11:00:41,556   copying build/lib/tests/testdata/covs/test_reassign_small_0.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs
2021-09-29T11:00:41,558   copying build/lib/tests/testdata/annotations2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,560   copying build/lib/tests/testdata/bedfile_alt.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,562   copying build/lib/tests/testdata/test_reassign_small_1.bam -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,566   copying build/lib/tests/testdata/bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,568   copying build/lib/tests/testdata/coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,570   copying build/lib/tests/testdata/matchscores.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,574   creating build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake
2021-09-29T11:00:41,575   creating build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake/metadata
2021-09-29T11:00:41,577   copying build/lib/tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y= -> build/bdist.linux-armv7l/wheel/tests/testdata/.snakemake/metadata
2021-09-29T11:00:41,579   copying build/lib/tests/testdata/test_reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,581   copying build/lib/tests/testdata/test_merge_bed_input.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,583   copying build/lib/tests/testdata/test_reassign_panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,585   copying build/lib/tests/testdata/test_reassignment_coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,587   copying build/lib/tests/testdata/sample03.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,589   copying build/lib/tests/testdata/test_merge_beds_input_0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,591   copying build/lib/tests/testdata/test_reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,593   copying build/lib/tests/testdata/test_merge_beds_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,595   copying build/lib/tests/testdata/reference.fa -> build/bdist.linux-armv7l/wheel/tests/testdata
2021-09-29T11:00:41,598   creating build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,599   copying build/lib/clearCNV/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,601   copying build/lib/clearCNV/cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,604   copying build/lib/clearCNV/util.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,607   copying build/lib/clearCNV/visualize_scores.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,609   copying build/lib/clearCNV/workflow_cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,611   copying build/lib/clearCNV/matchscores.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,613   copying build/lib/clearCNV/workflow_reassignment.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,616   creating build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T11:00:41,617   copying build/lib/clearCNV/workflow/Snakefile_reassignment -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T11:00:41,619   copying build/lib/clearCNV/workflow/config_cnv_calling.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T11:00:41,621   copying build/lib/clearCNV/workflow/bih_cluster.json -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T11:00:41,623   copying build/lib/clearCNV/workflow/config_reassignment.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T11:00:41,626   copying build/lib/clearCNV/workflow/Snakefile_cnv_calling -> build/bdist.linux-armv7l/wheel/clearCNV/workflow
2021-09-29T11:00:41,628   copying build/lib/clearCNV/_version.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,631   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,632   copying build/lib/clearCNV/viz_reassignment/settings.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,634   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-09-29T11:00:41,635   copying build/lib/clearCNV/viz_reassignment/assets/clear-cnv.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-09-29T11:00:41,637   copying build/lib/clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets
2021-09-29T11:00:41,644   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome
2021-09-29T11:00:41,646   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,647   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,650   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,654   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,672   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,677   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,680   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,686   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,691   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,698   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,702   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,723   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,728   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,731   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,736   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,740   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts
2021-09-29T11:00:41,745   creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T11:00:41,746   copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css
2021-09-29T11:00:41,750   copying build/lib/clearCNV/viz_reassignment/app.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,752   copying build/lib/clearCNV/viz_reassignment/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,753   copying build/lib/clearCNV/viz_reassignment/cache.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,755   copying build/lib/clearCNV/viz_reassignment/ui_plots.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,757   copying build/lib/clearCNV/viz_reassignment/store.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,760   copying build/lib/clearCNV/viz_reassignment/ui.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,762   copying build/lib/clearCNV/viz_reassignment/callbacks.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment
2021-09-29T11:00:41,764   copying build/lib/clearCNV/__main__.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,767   copying build/lib/clearCNV/misc.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,770   copying build/lib/clearCNV/cnv_arithmetics.py -> build/bdist.linux-armv7l/wheel/clearCNV
2021-09-29T11:00:41,772   running install_egg_info
2021-09-29T11:00:41,780   Copying clearCNV.egg-info to build/bdist.linux-armv7l/wheel/clearCNV-0.305-py3.7.egg-info
2021-09-29T11:00:41,796   running install_scripts
2021-09-29T11:00:41,890   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-09-29T11:00:41,894   creating build/bdist.linux-armv7l/wheel/clearCNV-0.305.dist-info/WHEEL
2021-09-29T11:00:41,897   creating '/tmp/pip-wheel-ebofbukn/clearCNV-0.305-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-09-29T11:00:41,899   adding 'clearCNV/__init__.py'
2021-09-29T11:00:41,902   adding 'clearCNV/__main__.py'
2021-09-29T11:00:41,903   adding 'clearCNV/_version.py'
2021-09-29T11:00:41,905   adding 'clearCNV/cnv_arithmetics.py'
2021-09-29T11:00:41,907   adding 'clearCNV/cnv_calling.py'
2021-09-29T11:00:41,908   adding 'clearCNV/matchscores.py'
2021-09-29T11:00:41,910   adding 'clearCNV/misc.py'
2021-09-29T11:00:41,912   adding 'clearCNV/util.py'
2021-09-29T11:00:41,913   adding 'clearCNV/visualize_scores.py'
2021-09-29T11:00:41,914   adding 'clearCNV/workflow_cnv_calling.py'
2021-09-29T11:00:41,916   adding 'clearCNV/workflow_reassignment.py'
2021-09-29T11:00:41,917   adding 'clearCNV/viz_reassignment/__init__.py'
2021-09-29T11:00:41,918   adding 'clearCNV/viz_reassignment/app.py'
2021-09-29T11:00:41,920   adding 'clearCNV/viz_reassignment/cache.py'
2021-09-29T11:00:41,921   adding 'clearCNV/viz_reassignment/callbacks.py'
2021-09-29T11:00:41,922   adding 'clearCNV/viz_reassignment/settings.py'
2021-09-29T11:00:41,924   adding 'clearCNV/viz_reassignment/store.py'
2021-09-29T11:00:41,926   adding 'clearCNV/viz_reassignment/ui.py'
2021-09-29T11:00:41,927   adding 'clearCNV/viz_reassignment/ui_plots.py'
2021-09-29T11:00:41,941   adding 'clearCNV/viz_reassignment/assets/bootstrap.min.css'
2021-09-29T11:00:41,943   adding 'clearCNV/viz_reassignment/assets/clear-cnv.css'
2021-09-29T11:00:41,950   adding 'clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css'
2021-09-29T11:00:41,973   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot'
2021-09-29T11:00:42,157   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg'
2021-09-29T11:00:42,184   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf'
2021-09-29T11:00:42,194   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff'
2021-09-29T11:00:42,203   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2'
2021-09-29T11:00:42,208   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot'
2021-09-29T11:00:42,230   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg'
2021-09-29T11:00:42,236   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf'
2021-09-29T11:00:42,239   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff'
2021-09-29T11:00:42,241   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2'
2021-09-29T11:00:42,272   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot'
2021-09-29T11:00:42,418   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg'
2021-09-29T11:00:42,455   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf'
2021-09-29T11:00:42,467   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff'
2021-09-29T11:00:42,476   adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2'
2021-09-29T11:00:42,479   adding 'clearCNV/workflow/Snakefile_cnv_calling'
2021-09-29T11:00:42,480   adding 'clearCNV/workflow/Snakefile_reassignment'
2021-09-29T11:00:42,481   adding 'clearCNV/workflow/bih_cluster.json'
2021-09-29T11:00:42,482   adding 'clearCNV/workflow/config_cnv_calling.yml'
2021-09-29T11:00:42,483   adding 'clearCNV/workflow/config_reassignment.yml'
2021-09-29T11:00:42,486   adding 'tests/__init__.py'
2021-09-29T11:00:42,488   adding 'tests/test_misc.py'
2021-09-29T11:00:42,491   adding 'tests/testdata/GC_annotations.bed'
2021-09-29T11:00:42,492   adding 'tests/testdata/allbams.txt'
2021-09-29T11:00:42,493   adding 'tests/testdata/allmerged.bed'
2021-09-29T11:00:42,494   adding 'tests/testdata/annotations.bed'
2021-09-29T11:00:42,495   adding 'tests/testdata/annotations2.bed'
2021-09-29T11:00:42,496   adding 'tests/testdata/bamfiles.txt'
2021-09-29T11:00:42,497   adding 'tests/testdata/bedfile.bed'
2021-09-29T11:00:42,498   adding 'tests/testdata/bedfile_alt.bed'
2021-09-29T11:00:42,500   adding 'tests/testdata/cov.tsv'
2021-09-29T11:00:42,724   adding 'tests/testdata/cov_reassignment.tsv'
2021-09-29T11:00:42,731   adding 'tests/testdata/coverages.tsv'
2021-09-29T11:00:42,732   adding 'tests/testdata/mappability.bed'
2021-09-29T11:00:42,733   adding 'tests/testdata/mappability.eq.1.bed'
2021-09-29T11:00:42,735   adding 'tests/testdata/matchscores.tsv'
2021-09-29T11:00:42,737   adding 'tests/testdata/merged.bed'
2021-09-29T11:00:42,738   adding 'tests/testdata/meta.tsv'
2021-09-29T11:00:42,740   adding 'tests/testdata/panel1.bed'
2021-09-29T11:00:42,744   adding 'tests/testdata/panel2.bed'
2021-09-29T11:00:42,745   adding 'tests/testdata/reassignment_p1_bamfiles.txt'
2021-09-29T11:00:42,746   adding 'tests/testdata/reassignment_p2_bamfiles.txt'
2021-09-29T11:00:42,749   adding 'tests/testdata/reassignment_union.bed'
2021-09-29T11:00:42,752   adding 'tests/testdata/reference.fa'
2021-09-29T11:00:42,753   adding 'tests/testdata/reference.fa.fai'
2021-09-29T11:00:42,754   adding 'tests/testdata/sample01.rtbed'
2021-09-29T11:00:42,756   adding 'tests/testdata/sample02.rtbed'
2021-09-29T11:00:42,757   adding 'tests/testdata/sample03.rtbed'
2021-09-29T11:00:42,764   adding 'tests/testdata/small.bam'
2021-09-29T11:00:42,768   adding 'tests/testdata/small.bam.bai'
2021-09-29T11:00:42,770   adding 'tests/testdata/small.rtbed'
2021-09-29T11:00:42,771   adding 'tests/testdata/targets.bed'
2021-09-29T11:00:42,772   adding 'tests/testdata/test_merge_bed_input.bed'
2021-09-29T11:00:42,773   adding 'tests/testdata/test_merge_bed_output.bed'
2021-09-29T11:00:42,774   adding 'tests/testdata/test_merge_beds_input_0.bed'
2021-09-29T11:00:42,775   adding 'tests/testdata/test_merge_beds_input_1.bed'
2021-09-29T11:00:42,776   adding 'tests/testdata/test_merge_beds_output.bed'
2021-09-29T11:00:42,777   adding 'tests/testdata/test_reassign_meta.tsv'
2021-09-29T11:00:42,778   adding 'tests/testdata/test_reassign_panel0.bed'
2021-09-29T11:00:42,779   adding 'tests/testdata/test_reassign_panel1.bed'
2021-09-29T11:00:42,787   adding 'tests/testdata/test_reassign_small_0.bam'
2021-09-29T11:00:42,791   adding 'tests/testdata/test_reassign_small_0.bam.bai'
2021-09-29T11:00:42,800   adding 'tests/testdata/test_reassign_small_1.bam'
2021-09-29T11:00:42,804   adding 'tests/testdata/test_reassign_small_1.bam.bai'
2021-09-29T11:00:42,806   adding 'tests/testdata/test_reassignment_coverages.tsv'
2021-09-29T11:00:42,807   adding 'tests/testdata/test_reassignment_p1_bamfiles.txt'
2021-09-29T11:00:42,808   adding 'tests/testdata/test_reassignment_p2_bamfiles.txt'
2021-09-29T11:00:42,811   adding 'tests/testdata/test_reassignment_ref.fa'
2021-09-29T11:00:42,812   adding 'tests/testdata/test_reassignment_ref.fa.fai'
2021-09-29T11:00:42,813   adding 'tests/testdata/test_reassignment_union.bed'
2021-09-29T11:00:42,815   adding 'tests/testdata/.snakemake/metadata/L2Zhc3Qvd29yay91c2Vycy92bWF5X20vZGV2ZWxvcG1lbnQvY2xlYXItY252L3Rlc3RzL3Rlc3RkYXRhL3Rlc3RfcmVhc3NpZ25tZW50X2NvdmVyYWdlcy50c3Y='
2021-09-29T11:00:42,817   adding 'tests/testdata/covs/test_reassign_small_0.rtbed'
2021-09-29T11:00:42,818   adding 'tests/testdata/covs/test_reassign_small_1.rtbed'
2021-09-29T11:00:42,819   adding 'tests/testdata/logs/merge_coverages.log'
2021-09-29T11:00:42,821   adding 'tests/testdata/logs/coverages/test_reassign_small_0.log'
2021-09-29T11:00:42,822   adding 'tests/testdata/logs/coverages/test_reassign_small_1.log'
2021-09-29T11:00:42,824   adding 'tests/testdata/sge_log/bash-3828326.log'
2021-09-29T11:00:42,825   adding 'tests/testdata/sge_log/bash-3828327.log'
2021-09-29T11:00:42,827   adding 'tests/testdata/sge_log/bash-3828329.log'
2021-09-29T11:00:42,828   adding 'clearCNV-0.305.dist-info/LICENSE'
2021-09-29T11:00:42,829   adding 'clearCNV-0.305.dist-info/METADATA'
2021-09-29T11:00:42,830   adding 'clearCNV-0.305.dist-info/WHEEL'
2021-09-29T11:00:42,831   adding 'clearCNV-0.305.dist-info/entry_points.txt'
2021-09-29T11:00:42,832   adding 'clearCNV-0.305.dist-info/top_level.txt'
2021-09-29T11:00:42,833   adding 'clearCNV-0.305.dist-info/RECORD'
2021-09-29T11:00:42,863   removing build/bdist.linux-armv7l/wheel
2021-09-29T11:00:42,968   Building wheel for clearcnv (setup.py): finished with status 'done'
2021-09-29T11:00:42,997   Created wheel for clearcnv: filename=clearCNV-0.305-py2.py3-none-any.whl size=1818871 sha256=40106d0345be35c62030317ed44d8eed5d1e5d4f520848c46e78b8ffc337da66
2021-09-29T11:00:42,998   Stored in directory: /tmp/pip-ephem-wheel-cache-uh1a8lpe/wheels/2f/1b/63/0c8ee4a36335930649b997bee0b2b4e10a3570aa8811d872b7
2021-09-29T11:00:43,011 Successfully built clearcnv
2021-09-29T11:00:43,077 Removed build tracker: '/tmp/pip-req-tracker-jwc_oqj7'