2021-10-13T10:38:16,191 Created temporary directory: /tmp/pip-ephem-wheel-cache-bxb3idqo 2021-10-13T10:38:16,197 Created temporary directory: /tmp/pip-req-tracker-8jdv97jl 2021-10-13T10:38:16,198 Initialized build tracking at /tmp/pip-req-tracker-8jdv97jl 2021-10-13T10:38:16,198 Created build tracker: /tmp/pip-req-tracker-8jdv97jl 2021-10-13T10:38:16,199 Entered build tracker: /tmp/pip-req-tracker-8jdv97jl 2021-10-13T10:38:16,200 Created temporary directory: /tmp/pip-wheel-y9d561ng 2021-10-13T10:38:16,271 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-10-13T10:38:16,275 2 location(s) to search for versions of sequana: 2021-10-13T10:38:16,275 * https://pypi.org/simple/sequana/ 2021-10-13T10:38:16,275 * https://www.piwheels.org/simple/sequana/ 2021-10-13T10:38:16,275 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2021-10-13T10:38:16,278 Getting page https://pypi.org/simple/sequana/ 2021-10-13T10:38:16,282 Found index url 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https://www.piwheels.org/simple/sequana/sequana-0.6.1-py3-none-any.whl#sha256=d9f7ee133817ee93576077f9a05fc6b0ff338b37c5951b7640811ee905aecec9 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,114 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.2-py3-none-any.whl#sha256=9daac3efca51d0416a4eb439ec2841fe9e0f79ab1771903e47570b683d3af55c (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,115 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.3-py3-none-any.whl#sha256=d2663bf47cd7f401ceacc471e1929e187db6b88f8a9b7c9c51ea1d0483d2bb73 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,115 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.3.post1-py3-none-any.whl#sha256=cd9278fe9ca6af6d3e096fc33b888ebccafb88c29ec2b958d2cfafaaf02ef13d (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,116 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.4-py3-none-any.whl#sha256=beb134933ee6020cec0c9632f7dc90bd320833a1a0be19cc1be8f2c1702dc6d3 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,117 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post1-py3-none-any.whl#sha256=c302b0d7a505ee314cb76562309a1bbc9990befe710507a6ce902b888d1b9f55 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,117 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post2-py3-none-any.whl#sha256=b8efd5c1500578ea35c2ad4b23bc95e43ad9eb6c6a7584ceca08256be9c24b4c (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,118 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post3-py3-none-any.whl#sha256=d52dea7fc456b2cb55600597e477b6d2d63e0c035f5aeb4c1abb7ebde596c3b1 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,119 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.7.0-py3-none-any.whl#sha256=c2169c7a41eee212666306fe6c7222c65cc5aabccda895d7f146d5d7f32c8731 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,119 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.7.1-py3-none-any.whl#sha256=833843fa58f0071d5fb7e389f223dfbaedb59bab50fe03e393c48d8f7e58e753 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,120 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.0-py3-none-any.whl#sha256=44036b7a0763499664f68477020c01b514be40321f58342fb288d51250ee1fbb (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,120 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.1-py3-none-any.whl#sha256=e1358a148898dc8c18d09bc91f3372287dc2b96b893c2b9602175d0831bd5a20 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,121 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.2-py3-none-any.whl#sha256=1dc0e02d6f85958f053ed73e767d0bd9f5671e22ebed95a3b70d9c5c1a5c97c8 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,122 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.3-py3-none-any.whl#sha256=55009f1bf3de983c31c6895316e81e30b6b460bba774165e9552839db7128f00 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,122 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.4-py3-none-any.whl#sha256=cdc6737edc9032885602632826e4913a082f1c66dabd70ebdfeb5695c5318c58 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,123 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.5-py3-none-any.whl#sha256=a6bf97c0284d77636b51fcd78ed7e22e0a195820fb6552be1a2540daaa433d75 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,124 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.6-py3-none-any.whl#sha256=0c91883675a8c454bd0725ae216bc2378d41ec952cef8ad6979ddc3b3b26e820 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,124 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.0-py3-none-any.whl#sha256=dce821b312c886051cfa4bf729f17a5df801fa195ac861642bdf07e6c653f9de (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,125 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.1-py3-none-any.whl#sha256=f2c12f5f57a1dac2672b6c19565b8f75c1815dcb3cb71fe457ef808b59b70f3f (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,126 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.2-py3-none-any.whl#sha256=31f71924b1cabcd3e3e8d8304160de58be7803aeda7d35ec1bf449084f420c3e (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,126 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.3-py3-none-any.whl#sha256=0374fc2b8f2f54ea8e3a5091403798b1bae59166b89fd7cf6eb846f7a3d944b3 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,127 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.4-py3-none-any.whl#sha256=178e6af188bbfa96b5e54a4f0d33b5c5ba607e74cbc67cf85a8aa588e629502c (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,128 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.5-py3-none-any.whl#sha256=a7b054c071f59f03ce6d4e5659c452cb60656f0398728417544674bcf915672f (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,128 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.6-py3-none-any.whl#sha256=a57d1bef0edc28a2c836768c6a4c23146b7702accb38718db86bd7b6fa9d8470 (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,129 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.7-py3-none-any.whl#sha256=ab56e134c46744a1c0b6286cdf17cf65f13ea1c6db1f036c8be5be34f3b754fc (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,130 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.8-py3-none-any.whl#sha256=103274642cdeb6dab96a62b7f0df7cd961d70e3e856823bd6d5ef85b37b0477b (from https://www.piwheels.org/simple/sequana/) 2021-10-13T10:38:17,190 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2021-10-13T10:38:17,223 Collecting sequana==0.12.4 2021-10-13T10:38:17,227 Created temporary directory: /tmp/pip-unpack-l39tm689 2021-10-13T10:38:18,087 Downloading sequana-0.12.4.tar.gz (13.6 MB) 2021-10-13T10:38:26,009 Added sequana==0.12.4 from https://files.pythonhosted.org/packages/92/7f/daa242ae8422669d85db798bfa31e34e7a8a722f7a39941d4509a07117cc/sequana-0.12.4.tar.gz#sha256=b45c166e54d739c2ec0df14b5a9dc498526f0f02c79c2bb8b53aee7ace9fe1be to build tracker '/tmp/pip-req-tracker-8jdv97jl' 2021-10-13T10:38:26,013 Running setup.py (path:/tmp/pip-wheel-y9d561ng/sequana_8ada8afd081b4dc4bbf6c47aeae4a233/setup.py) egg_info for package sequana 2021-10-13T10:38:26,014 Created temporary directory: /tmp/pip-pip-egg-info-62iin529 2021-10-13T10:38:26,015 Running command python setup.py egg_info 2021-10-13T10:38:28,533 running egg_info 2021-10-13T10:38:28,538 creating /tmp/pip-pip-egg-info-62iin529/sequana.egg-info 2021-10-13T10:38:28,542 writing dependency_links to /tmp/pip-pip-egg-info-62iin529/sequana.egg-info/dependency_links.txt 2021-10-13T10:38:28,544 writing /tmp/pip-pip-egg-info-62iin529/sequana.egg-info/PKG-INFO 2021-10-13T10:38:28,553 writing top-level names to /tmp/pip-pip-egg-info-62iin529/sequana.egg-info/top_level.txt 2021-10-13T10:38:28,556 writing requirements to /tmp/pip-pip-egg-info-62iin529/sequana.egg-info/requires.txt 2021-10-13T10:38:28,559 writing entry points to /tmp/pip-pip-egg-info-62iin529/sequana.egg-info/entry_points.txt 2021-10-13T10:38:28,564 writing manifest file '/tmp/pip-pip-egg-info-62iin529/sequana.egg-info/SOURCES.txt' 2021-10-13T10:38:29,934 reading manifest file '/tmp/pip-pip-egg-info-62iin529/sequana.egg-info/SOURCES.txt' 2021-10-13T10:38:29,937 reading manifest template 'MANIFEST.in' 2021-10-13T10:38:29,944 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-10-13T10:38:29,948 warning: no previously-included files matching '*pyc' found under directory '*' 2021-10-13T10:38:30,615 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-10-13T10:38:30,618 warning: no previously-included files matching '*' found under directory 'test' 2021-10-13T10:38:30,621 warning: no previously-included files found matching 'sequana/rm2.py' 2021-10-13T10:38:30,671 writing manifest file '/tmp/pip-pip-egg-info-62iin529/sequana.egg-info/SOURCES.txt' 2021-10-13T10:38:30,813 Source in /tmp/pip-wheel-y9d561ng/sequana_8ada8afd081b4dc4bbf6c47aeae4a233 has version 0.12.4, which satisfies requirement sequana==0.12.4 from https://files.pythonhosted.org/packages/92/7f/daa242ae8422669d85db798bfa31e34e7a8a722f7a39941d4509a07117cc/sequana-0.12.4.tar.gz#sha256=b45c166e54d739c2ec0df14b5a9dc498526f0f02c79c2bb8b53aee7ace9fe1be 2021-10-13T10:38:30,814 Removed sequana==0.12.4 from https://files.pythonhosted.org/packages/92/7f/daa242ae8422669d85db798bfa31e34e7a8a722f7a39941d4509a07117cc/sequana-0.12.4.tar.gz#sha256=b45c166e54d739c2ec0df14b5a9dc498526f0f02c79c2bb8b53aee7ace9fe1be from build tracker '/tmp/pip-req-tracker-8jdv97jl' 2021-10-13T10:38:30,825 Created temporary directory: /tmp/pip-unpack-ehqr7jru 2021-10-13T10:38:30,826 Building wheels for collected packages: sequana 2021-10-13T10:38:30,835 Created temporary directory: /tmp/pip-wheel-j6mw_wrr 2021-10-13T10:38:30,836 Building wheel for sequana (setup.py): started 2021-10-13T10:38:30,837 Destination directory: /tmp/pip-wheel-j6mw_wrr 2021-10-13T10:38:30,838 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-y9d561ng/sequana_8ada8afd081b4dc4bbf6c47aeae4a233/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-y9d561ng/sequana_8ada8afd081b4dc4bbf6c47aeae4a233/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-j6mw_wrr 2021-10-13T10:38:33,279 running bdist_wheel 2021-10-13T10:38:33,295 running build 2021-10-13T10:38:33,296 running build_py 2021-10-13T10:38:33,642 creating build 2021-10-13T10:38:33,642 creating build/lib 2021-10-13T10:38:33,644 creating build/lib/sequana 2021-10-13T10:38:33,646 copying sequana/lazy.py -> build/lib/sequana 2021-10-13T10:38:33,651 copying sequana/krona.py -> build/lib/sequana 2021-10-13T10:38:33,655 copying sequana/cnv.py -> build/lib/sequana 2021-10-13T10:38:33,659 copying sequana/pacbio.py -> build/lib/sequana 2021-10-13T10:38:33,667 copying sequana/cpg_islands.py -> build/lib/sequana 2021-10-13T10:38:33,672 copying sequana/demultiplex.py -> build/lib/sequana 2021-10-13T10:38:33,678 copying sequana/fasta.py -> build/lib/sequana 2021-10-13T10:38:33,685 copying sequana/find_motif.py -> build/lib/sequana 2021-10-13T10:38:33,691 copying sequana/kmer.py -> build/lib/sequana 2021-10-13T10:38:33,695 copying sequana/cigar.py -> build/lib/sequana 2021-10-13T10:38:33,700 copying sequana/itol.py -> build/lib/sequana 2021-10-13T10:38:33,704 copying sequana/kegg.py -> build/lib/sequana 2021-10-13T10:38:33,708 copying sequana/misc.py -> build/lib/sequana 2021-10-13T10:38:33,713 copying sequana/snpeff.py -> build/lib/sequana 2021-10-13T10:38:33,718 copying sequana/salmon.py -> build/lib/sequana 2021-10-13T10:38:33,723 copying sequana/chipseq.py -> build/lib/sequana 2021-10-13T10:38:33,731 copying sequana/mh.py -> build/lib/sequana 2021-10-13T10:38:33,738 copying sequana/rnadiff.py -> build/lib/sequana 2021-10-13T10:38:33,748 copying sequana/canu_scanner.py -> build/lib/sequana 2021-10-13T10:38:33,753 copying sequana/coverage.py -> build/lib/sequana 2021-10-13T10:38:33,758 copying sequana/criteria.py -> build/lib/sequana 2021-10-13T10:38:33,763 copying sequana/phred.py -> build/lib/sequana 2021-10-13T10:38:33,768 copying sequana/sniffer.py -> build/lib/sequana 2021-10-13T10:38:33,773 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2021-10-13T10:38:33,780 copying sequana/vcf_filter.py -> build/lib/sequana 2021-10-13T10:38:33,787 copying sequana/errors.py -> build/lib/sequana 2021-10-13T10:38:33,792 copying sequana/lazyimports.py -> build/lib/sequana 2021-10-13T10:38:33,797 copying sequana/running_median.py -> build/lib/sequana 2021-10-13T10:38:33,801 copying sequana/jsontool.py -> build/lib/sequana 2021-10-13T10:38:33,805 copying sequana/vcftools.py -> build/lib/sequana 2021-10-13T10:38:33,809 copying sequana/bedtools.py -> build/lib/sequana 2021-10-13T10:38:33,822 copying sequana/fastq.py -> build/lib/sequana 2021-10-13T10:38:33,833 copying sequana/datatools.py -> build/lib/sequana 2021-10-13T10:38:33,840 copying sequana/gff3.py -> build/lib/sequana 2021-10-13T10:38:33,849 copying sequana/featurecounts.py -> build/lib/sequana 2021-10-13T10:38:33,856 copying sequana/isoseq.py -> build/lib/sequana 2021-10-13T10:38:33,864 copying sequana/tools.py -> build/lib/sequana 2021-10-13T10:38:33,870 copying sequana/bed.py -> build/lib/sequana 2021-10-13T10:38:33,877 copying sequana/busco.py -> build/lib/sequana 2021-10-13T10:38:33,885 copying sequana/assembly.py -> build/lib/sequana 2021-10-13T10:38:33,893 copying sequana/vst.py -> build/lib/sequana 2021-10-13T10:38:33,898 copying sequana/genbank.py -> build/lib/sequana 2021-10-13T10:38:33,904 copying sequana/bamtools.py -> build/lib/sequana 2021-10-13T10:38:33,915 copying sequana/mgi.py -> build/lib/sequana 2021-10-13T10:38:33,922 copying sequana/__init__.py -> build/lib/sequana 2021-10-13T10:38:33,929 copying sequana/trf.py -> build/lib/sequana 2021-10-13T10:38:33,936 copying sequana/compare.py -> build/lib/sequana 2021-10-13T10:38:33,943 copying sequana/contigs.py -> build/lib/sequana 2021-10-13T10:38:33,949 copying sequana/taxonomy.py -> build/lib/sequana 2021-10-13T10:38:33,955 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2021-10-13T10:38:33,963 copying sequana/fastqc.py -> build/lib/sequana 2021-10-13T10:38:33,971 copying sequana/stats.py -> build/lib/sequana 2021-10-13T10:38:33,978 copying sequana/protein.py -> build/lib/sequana 2021-10-13T10:38:33,982 copying sequana/summary.py -> build/lib/sequana 2021-10-13T10:38:33,988 copying sequana/mixture.py -> build/lib/sequana 2021-10-13T10:38:33,994 copying sequana/iuapc.py -> build/lib/sequana 2021-10-13T10:38:33,999 copying sequana/iem.py -> build/lib/sequana 2021-10-13T10:38:34,005 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2021-10-13T10:38:34,011 copying sequana/databases.py -> build/lib/sequana 2021-10-13T10:38:34,019 copying sequana/gtf.py -> build/lib/sequana 2021-10-13T10:38:34,026 copying sequana/sequence.py -> build/lib/sequana 2021-10-13T10:38:34,040 creating build/lib/sequana/viz 2021-10-13T10:38:34,043 copying sequana/viz/venn.py -> build/lib/sequana/viz 2021-10-13T10:38:34,048 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2021-10-13T10:38:34,054 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2021-10-13T10:38:34,059 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2021-10-13T10:38:34,064 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2021-10-13T10:38:34,070 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2021-10-13T10:38:34,078 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2021-10-13T10:38:34,085 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2021-10-13T10:38:34,093 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2021-10-13T10:38:34,100 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2021-10-13T10:38:34,105 copying sequana/viz/mds.py -> build/lib/sequana/viz 2021-10-13T10:38:34,110 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2021-10-13T10:38:34,115 copying sequana/viz/pca.py -> build/lib/sequana/viz 2021-10-13T10:38:34,121 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2021-10-13T10:38:34,128 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2021-10-13T10:38:34,134 copying sequana/viz/anova.py -> build/lib/sequana/viz 2021-10-13T10:38:34,139 copying sequana/viz/core.py -> build/lib/sequana/viz 2021-10-13T10:38:34,146 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2021-10-13T10:38:34,157 creating build/lib/sequana/rules 2021-10-13T10:38:34,161 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2021-10-13T10:38:34,166 creating build/lib/sequana/enrichment 2021-10-13T10:38:34,169 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2021-10-13T10:38:34,178 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2021-10-13T10:38:34,185 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2021-10-13T10:38:34,190 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2021-10-13T10:38:34,194 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2021-10-13T10:38:34,201 creating build/lib/sequana/multiqc 2021-10-13T10:38:34,204 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,210 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,216 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,222 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,227 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,233 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,239 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,243 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,248 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,253 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,257 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,262 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2021-10-13T10:38:34,269 creating build/lib/sequana/plots 2021-10-13T10:38:34,271 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2021-10-13T10:38:34,278 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2021-10-13T10:38:34,284 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2021-10-13T10:38:34,289 creating build/lib/sequana/resources 2021-10-13T10:38:34,290 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2021-10-13T10:38:34,296 creating build/lib/sequana/utils 2021-10-13T10:38:34,298 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2021-10-13T10:38:34,304 copying sequana/utils/tree.py -> build/lib/sequana/utils 2021-10-13T10:38:34,311 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2021-10-13T10:38:34,317 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2021-10-13T10:38:34,322 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2021-10-13T10:38:34,327 copying sequana/utils/config.py -> build/lib/sequana/utils 2021-10-13T10:38:34,332 creating build/lib/sequana/kraken 2021-10-13T10:38:34,333 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2021-10-13T10:38:34,342 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2021-10-13T10:38:34,346 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2021-10-13T10:38:34,358 creating build/lib/sequana/modules_report 2021-10-13T10:38:34,360 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,366 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,371 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,375 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,381 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,389 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,395 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,400 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,407 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,412 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,419 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,425 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,430 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,435 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,440 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,444 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,451 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,456 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,463 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,471 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2021-10-13T10:38:34,481 creating build/lib/sequana/scripts 2021-10-13T10:38:34,484 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,491 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,496 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,502 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,506 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,511 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,516 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,523 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,530 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,538 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,544 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2021-10-13T10:38:34,550 creating build/lib/sequana/rules/Variant_caller 2021-10-13T10:38:34,552 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2021-10-13T10:38:34,559 creating build/lib/sequana/rules/Adapters 2021-10-13T10:38:34,562 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2021-10-13T10:38:34,569 creating build/lib/sequana/rules/SnpEff 2021-10-13T10:38:34,571 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2021-10-13T10:38:34,576 creating build/lib/sequana/rules/Utils 2021-10-13T10:38:34,578 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2021-10-13T10:38:34,582 creating build/lib/sequana/rules/sambamba 2021-10-13T10:38:34,584 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2021-10-13T10:38:34,589 creating build/lib/sequana/rules/deeptools 2021-10-13T10:38:34,591 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2021-10-13T10:38:34,598 creating build/lib/sequana/rules/codecs 2021-10-13T10:38:34,601 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2021-10-13T10:38:34,607 creating build/lib/sequana/rules/Pacbio 2021-10-13T10:38:34,610 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2021-10-13T10:38:34,615 creating build/lib/sequana/rules/idr 2021-10-13T10:38:34,617 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2021-10-13T10:38:34,621 creating build/lib/sequana/rules/Assembly 2021-10-13T10:38:34,623 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2021-10-13T10:38:34,628 creating build/lib/sequana/rules/picard-tools 2021-10-13T10:38:34,630 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2021-10-13T10:38:34,636 creating build/lib/sequana/resources/snpeff 2021-10-13T10:38:34,638 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2021-10-13T10:38:34,644 creating build/lib/sequana/resources/examples 2021-10-13T10:38:34,647 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2021-10-13T10:38:34,653 creating build/lib/sequana/resources/templates 2021-10-13T10:38:34,654 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2021-10-13T10:38:34,659 creating build/lib/sequana/resources/css 2021-10-13T10:38:34,661 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2021-10-13T10:38:34,665 creating build/lib/sequana/resources/js 2021-10-13T10:38:34,667 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2021-10-13T10:38:34,671 creating build/lib/sequana/resources/busco 2021-10-13T10:38:34,673 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2021-10-13T10:38:34,677 creating build/lib/sequana/resources/doc 2021-10-13T10:38:34,679 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2021-10-13T10:38:34,684 creating build/lib/sequana/resources/testing 2021-10-13T10:38:34,686 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2021-10-13T10:38:34,690 creating build/lib/sequana/resources/images 2021-10-13T10:38:34,692 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2021-10-13T10:38:34,696 creating build/lib/sequana/resources/data 2021-10-13T10:38:34,698 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2021-10-13T10:38:34,703 creating build/lib/sequana/resources/canvas 2021-10-13T10:38:34,705 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2021-10-13T10:38:34,708 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2021-10-13T10:38:34,713 creating build/lib/sequana/resources/doc/rnadiff_compare 2021-10-13T10:38:34,716 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2021-10-13T10:38:34,722 creating build/lib/sequana/resources/testing/featurecounts 2021-10-13T10:38:34,725 copying sequana/resources/testing/featurecounts/__init__.py -> build/lib/sequana/resources/testing/featurecounts 2021-10-13T10:38:34,731 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2021-10-13T10:38:34,734 copying sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2021-10-13T10:38:34,738 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-10-13T10:38:34,740 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-10-13T10:38:34,745 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-10-13T10:38:34,746 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-10-13T10:38:34,751 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-10-13T10:38:34,753 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-10-13T10:38:34,757 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-10-13T10:38:34,759 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-10-13T10:38:35,649 copying sequana/rules/README.rst -> build/lib/sequana/rules 2021-10-13T10:38:35,653 creating build/lib/sequana/rules/bed_to_gff 2021-10-13T10:38:35,655 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2021-10-13T10:38:35,660 creating build/lib/sequana/rules/fastqc 2021-10-13T10:38:35,662 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2021-10-13T10:38:35,667 creating build/lib/sequana/rules/dag 2021-10-13T10:38:35,668 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2021-10-13T10:38:35,674 creating build/lib/sequana/rules/remove_blacklist 2021-10-13T10:38:35,676 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2021-10-13T10:38:35,683 creating build/lib/sequana/rules/revcomp_rule 2021-10-13T10:38:35,685 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2021-10-13T10:38:35,692 creating build/lib/sequana/rules/falco 2021-10-13T10:38:35,695 copying sequana/rules/falco/falco.rules -> build/lib/sequana/rules/falco 2021-10-13T10:38:35,699 creating build/lib/sequana/rules/miRNA_count_dynamic 2021-10-13T10:38:35,701 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2021-10-13T10:38:35,706 creating build/lib/sequana/rules/samtools_sort 2021-10-13T10:38:35,708 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2021-10-13T10:38:35,713 creating build/lib/sequana/rules/multiqc 2021-10-13T10:38:35,715 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2021-10-13T10:38:35,722 creating build/lib/sequana/rules/digital_normalisation 2021-10-13T10:38:35,724 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2021-10-13T10:38:35,731 creating build/lib/sequana/rules/conda 2021-10-13T10:38:35,733 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2021-10-13T10:38:35,739 creating build/lib/sequana/rules/prokka 2021-10-13T10:38:35,740 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2021-10-13T10:38:35,746 creating build/lib/sequana/rules/bwa_index 2021-10-13T10:38:35,747 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2021-10-13T10:38:35,752 creating build/lib/sequana/rules/salmon_mapping 2021-10-13T10:38:35,754 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2021-10-13T10:38:35,761 creating build/lib/sequana/rules/star_mapping 2021-10-13T10:38:35,763 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2021-10-13T10:38:35,770 creating build/lib/sequana/rules/preSARTools 2021-10-13T10:38:35,773 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2021-10-13T10:38:35,779 creating build/lib/sequana/rules/rulegraph 2021-10-13T10:38:35,780 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2021-10-13T10:38:35,785 creating build/lib/sequana/rules/pacbio_quality 2021-10-13T10:38:35,787 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2021-10-13T10:38:35,792 creating build/lib/sequana/rules/samtools_depth 2021-10-13T10:38:35,794 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2021-10-13T10:38:35,800 creating build/lib/sequana/rules/bam_analysis 2021-10-13T10:38:35,802 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2021-10-13T10:38:35,809 creating build/lib/sequana/rules/igvtools 2021-10-13T10:38:35,811 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2021-10-13T10:38:35,818 creating build/lib/sequana/rules/DupRadar 2021-10-13T10:38:35,819 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2021-10-13T10:38:35,824 creating build/lib/sequana/rules/SARTools 2021-10-13T10:38:35,826 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2021-10-13T10:38:35,832 creating build/lib/sequana/rules/bwa_bam_to_fastq 2021-10-13T10:38:35,834 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2021-10-13T10:38:35,840 creating build/lib/sequana/rules/sequana_coverage 2021-10-13T10:38:35,842 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2021-10-13T10:38:35,850 creating build/lib/sequana/rules/extract_fasta_from_bed 2021-10-13T10:38:35,852 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2021-10-13T10:38:35,859 creating build/lib/sequana/rules/fastq_screen_report 2021-10-13T10:38:35,861 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2021-10-13T10:38:35,866 creating build/lib/sequana/rules/star_index 2021-10-13T10:38:35,868 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2021-10-13T10:38:35,873 creating build/lib/sequana/rules/fastq_sampling 2021-10-13T10:38:35,875 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2021-10-13T10:38:35,881 creating build/lib/sequana/rules/bowtie2_index 2021-10-13T10:38:35,884 copying sequana/rules/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/bowtie2_index 2021-10-13T10:38:35,892 creating build/lib/sequana/rules/fastq_screen 2021-10-13T10:38:35,896 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2021-10-13T10:38:35,902 creating build/lib/sequana/rules/rnaseqc 2021-10-13T10:38:35,905 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2021-10-13T10:38:35,911 creating build/lib/sequana/rules/mapping_analysis 2021-10-13T10:38:35,913 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2021-10-13T10:38:35,919 creating build/lib/sequana/rules/chipuanar 2021-10-13T10:38:35,922 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2021-10-13T10:38:35,928 creating build/lib/sequana/rules/quast 2021-10-13T10:38:35,931 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2021-10-13T10:38:35,937 creating build/lib/sequana/rules/bamCoverage 2021-10-13T10:38:35,940 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2021-10-13T10:38:35,945 creating build/lib/sequana/rules/spp 2021-10-13T10:38:35,948 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2021-10-13T10:38:35,954 creating build/lib/sequana/rules/summary_pipeline 2021-10-13T10:38:35,956 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2021-10-13T10:38:35,962 creating build/lib/sequana/rules/fastp 2021-10-13T10:38:35,965 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2021-10-13T10:38:35,971 creating build/lib/sequana/rules/feature_counts 2021-10-13T10:38:35,974 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2021-10-13T10:38:35,980 creating build/lib/sequana/rules/indel_realigner 2021-10-13T10:38:35,985 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2021-10-13T10:38:35,993 creating build/lib/sequana/rules/bam_quality_filter 2021-10-13T10:38:35,997 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2021-10-13T10:38:36,004 creating build/lib/sequana/rules/salmon_index 2021-10-13T10:38:36,006 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2021-10-13T10:38:36,012 creating build/lib/sequana/rules/multiqc2 2021-10-13T10:38:36,015 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2021-10-13T10:38:36,022 creating build/lib/sequana/rules/spikes_counting 2021-10-13T10:38:36,026 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2021-10-13T10:38:36,035 creating build/lib/sequana/rules/format_contigs 2021-10-13T10:38:36,038 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2021-10-13T10:38:36,045 creating build/lib/sequana/rules/macs3_dynamic 2021-10-13T10:38:36,048 copying sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/lib/sequana/rules/macs3_dynamic 2021-10-13T10:38:36,054 creating build/lib/sequana/rules/copy_multiple_files 2021-10-13T10:38:36,057 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2021-10-13T10:38:36,064 creating build/lib/sequana/rules/tophat_mapping 2021-10-13T10:38:36,068 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2021-10-13T10:38:36,076 creating build/lib/sequana/rules/multiqc/2.0 2021-10-13T10:38:36,080 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2021-10-13T10:38:36,087 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-10-13T10:38:36,089 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-10-13T10:38:36,095 creating build/lib/sequana/rules/Variant_caller/freebayes 2021-10-13T10:38:36,096 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2021-10-13T10:38:36,102 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-10-13T10:38:36,104 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-10-13T10:38:36,111 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-10-13T10:38:36,113 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-10-13T10:38:36,120 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-10-13T10:38:36,123 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-10-13T10:38:36,128 creating build/lib/sequana/rules/Adapters/identify_adapters 2021-10-13T10:38:36,130 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2021-10-13T10:38:36,135 creating build/lib/sequana/rules/Adapters/alien_trimmer 2021-10-13T10:38:36,137 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2021-10-13T10:38:36,142 creating build/lib/sequana/rules/Adapters/adapter_removal 2021-10-13T10:38:36,145 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2021-10-13T10:38:36,152 creating build/lib/sequana/rules/Adapters/cutadapt 2021-10-13T10:38:36,154 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2021-10-13T10:38:36,162 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-10-13T10:38:36,165 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-10-13T10:38:36,172 creating build/lib/sequana/rules/peak_calling 2021-10-13T10:38:36,173 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-10-13T10:38:36,176 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-10-13T10:38:36,183 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-10-13T10:38:36,186 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-10-13T10:38:36,193 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2021-10-13T10:38:36,195 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2021-10-13T10:38:36,202 creating build/lib/sequana/rules/Utils/dynamic_copy 2021-10-13T10:38:36,204 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2021-10-13T10:38:36,209 creating build/lib/sequana/rules/sambamba/sambamba_filter 2021-10-13T10:38:36,211 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2021-10-13T10:38:36,216 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2021-10-13T10:38:36,218 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2021-10-13T10:38:36,223 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-10-13T10:38:36,225 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-10-13T10:38:36,232 creating build/lib/sequana/rules/deeptools/plotCoverage 2021-10-13T10:38:36,235 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2021-10-13T10:38:36,242 creating build/lib/sequana/rules/deeptools/multiBamSummary 2021-10-13T10:38:36,244 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2021-10-13T10:38:36,249 creating build/lib/sequana/rules/deeptools/plotCorrelation 2021-10-13T10:38:36,251 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2021-10-13T10:38:36,256 creating build/lib/sequana/rules/kraken 2021-10-13T10:38:36,257 creating build/lib/sequana/rules/kraken/2.0 2021-10-13T10:38:36,259 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2021-10-13T10:38:36,266 creating build/lib/sequana/rules/kraken/1.1 2021-10-13T10:38:36,268 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2021-10-13T10:38:36,276 creating build/lib/sequana/rules/kraken/1.0 2021-10-13T10:38:36,278 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2021-10-13T10:38:36,286 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-10-13T10:38:36,288 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-10-13T10:38:36,295 creating build/lib/sequana/rules/codecs/bz2_to_gz 2021-10-13T10:38:36,297 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2021-10-13T10:38:36,305 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2021-10-13T10:38:36,306 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2021-10-13T10:38:36,311 creating build/lib/sequana/rules/codecs/fastq_to_gz 2021-10-13T10:38:36,313 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2021-10-13T10:38:36,318 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2021-10-13T10:38:36,320 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2021-10-13T10:38:36,325 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-10-13T10:38:36,328 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-10-13T10:38:36,335 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-10-13T10:38:36,337 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-10-13T10:38:36,344 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-10-13T10:38:36,347 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-10-13T10:38:36,352 creating build/lib/sequana/rules/codecs/gz_to_bz2 2021-10-13T10:38:36,353 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2021-10-13T10:38:36,359 creating build/lib/sequana/rules/codecs/bam_to_fasta 2021-10-13T10:38:36,360 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2021-10-13T10:38:36,366 creating build/lib/sequana/rules/codecs/gz_to_fastq 2021-10-13T10:38:36,368 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2021-10-13T10:38:36,375 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2021-10-13T10:38:36,377 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2021-10-13T10:38:36,384 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2021-10-13T10:38:36,387 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2021-10-13T10:38:36,394 creating build/lib/sequana/rules/idr/compute_idr 2021-10-13T10:38:36,396 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2021-10-13T10:38:36,403 creating build/lib/sequana/rules/idr/stats_peakCalling 2021-10-13T10:38:36,406 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2021-10-13T10:38:36,411 creating build/lib/sequana/rules/idr/select_peaks 2021-10-13T10:38:36,413 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2021-10-13T10:38:36,418 creating build/lib/sequana/rules/idr/intersectionApproach 2021-10-13T10:38:36,420 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2021-10-13T10:38:36,425 creating build/lib/sequana/rules/idr/metrics_peaks 2021-10-13T10:38:36,427 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2021-10-13T10:38:36,435 creating build/lib/sequana/rules/idr/preIDR_dynamic 2021-10-13T10:38:36,437 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2021-10-13T10:38:36,446 creating build/lib/sequana/rules/idr/union_peaks 2021-10-13T10:38:36,448 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2021-10-13T10:38:36,456 creating build/lib/sequana/rules/Assembly/spades 2021-10-13T10:38:36,458 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2021-10-13T10:38:36,465 creating build/lib/sequana/rules/Assembly/canu 2021-10-13T10:38:36,468 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2021-10-13T10:38:36,475 creating build/lib/sequana/rules/Assembly/busco_analysis 2021-10-13T10:38:36,478 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2021-10-13T10:38:36,485 creating build/lib/sequana/rules/Assembly/busco 2021-10-13T10:38:36,487 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2021-10-13T10:38:36,495 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2021-10-13T10:38:36,497 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2021-10-13T10:38:36,504 creating build/lib/sequana/rules/picard-tools/add_read_group 2021-10-13T10:38:36,507 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2021-10-13T10:38:36,514 creating build/lib/sequana/rules/picard-tools/reorderSam 2021-10-13T10:38:36,517 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2021-10-13T10:38:36,524 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2021-10-13T10:38:36,526 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2021-10-13T10:38:36,534 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-10-13T10:38:36,536 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-10-13T10:38:36,543 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-10-13T10:38:36,546 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-10-13T10:38:36,553 creating build/lib/sequana/rules/SnpEff/snpeff 2021-10-13T10:38:36,555 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-10-13T10:38:36,558 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-10-13T10:38:36,565 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-10-13T10:38:36,568 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-10-13T10:38:36,576 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-10-13T10:38:36,577 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-10-13T10:38:36,581 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-10-13T10:38:36,588 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-10-13T10:38:36,590 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-10-13T10:38:36,596 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2021-10-13T10:38:36,602 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2021-10-13T10:38:36,609 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2021-10-13T10:38:36,617 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2021-10-13T10:38:36,628 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2021-10-13T10:38:36,635 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2021-10-13T10:38:36,640 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2021-10-13T10:38:36,645 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2021-10-13T10:38:36,651 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2021-10-13T10:38:36,658 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2021-10-13T10:38:36,678 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2021-10-13T10:38:36,685 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2021-10-13T10:38:36,693 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2021-10-13T10:38:36,702 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2021-10-13T10:38:36,710 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,716 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,730 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,745 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,755 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,771 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,802 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,833 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,839 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,853 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,861 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,870 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,876 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2021-10-13T10:38:36,886 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2021-10-13T10:38:36,891 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,897 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,903 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,912 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,918 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,922 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,928 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,937 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,942 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,962 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,966 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,972 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,986 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,993 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:36,999 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,004 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,009 copying sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,014 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,020 copying sequana/resources/testing/test.bam.bai -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,025 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,030 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,039 copying sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,046 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,054 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,060 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,065 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,069 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,074 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,079 copying sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,085 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,092 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,106 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,110 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,120 copying sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,126 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,134 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,167 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,175 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,183 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,207 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,211 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,215 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,226 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,267 copying sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,271 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,278 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,285 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,292 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,301 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,321 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,359 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,373 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,380 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,385 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,390 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,431 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,473 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,479 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,487 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,493 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,500 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,506 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,516 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,522 copying sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,527 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,534 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,545 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,551 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,558 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,562 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,568 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,576 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,582 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,588 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,594 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,660 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,665 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,672 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,686 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2021-10-13T10:38:37,712 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-10-13T10:38:37,720 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-10-13T10:38:37,728 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-10-13T10:38:37,734 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2021-10-13T10:38:37,735 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-10-13T10:38:37,738 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-10-13T10:38:37,743 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-10-13T10:38:37,748 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-10-13T10:38:37,750 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-10-13T10:38:37,757 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-10-13T10:38:37,763 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-10-13T10:38:37,766 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-10-13T10:38:37,772 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-10-13T10:38:37,776 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2021-10-13T10:38:37,782 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2021-10-13T10:38:37,788 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2021-10-13T10:38:37,801 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2021-10-13T10:38:37,808 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2021-10-13T10:38:37,816 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2021-10-13T10:38:37,828 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2021-10-13T10:38:37,842 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2021-10-13T10:38:37,849 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2021-10-13T10:38:37,857 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2021-10-13T10:38:37,886 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2021-10-13T10:38:37,894 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2021-10-13T10:38:37,900 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2021-10-13T10:38:37,955 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2021-10-13T10:38:37,990 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-10-13T10:38:38,008 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2021-10-13T10:38:38,026 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2021-10-13T10:38:38,109 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2021-10-13T10:38:38,118 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2021-10-13T10:38:38,123 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-10-13T10:38:38,568 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2021-10-13T10:38:38,581 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-10-13T10:38:38,600 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2021-10-13T10:38:38,640 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2021-10-13T10:38:38,647 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2021-10-13T10:38:38,659 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2021-10-13T10:38:38,698 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2021-10-13T10:38:38,753 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2021-10-13T10:38:38,763 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-10-13T10:38:39,208 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-10-13T10:38:39,224 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2021-10-13T10:38:39,235 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2021-10-13T10:38:39,243 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2021-10-13T10:38:39,323 installing to build/bdist.linux-armv7l/wheel 2021-10-13T10:38:39,324 running install 2021-10-13T10:38:39,326 running install_lib 2021-10-13T10:38:39,334 creating build/bdist.linux-armv7l 2021-10-13T10:38:39,334 creating build/bdist.linux-armv7l/wheel 2021-10-13T10:38:39,341 creating build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,343 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,347 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,352 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,358 creating build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,360 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,367 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,373 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,379 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,385 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,390 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,398 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,404 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,410 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,417 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,422 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,428 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,433 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,439 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,447 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,453 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,459 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,464 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-10-13T10:38:39,471 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,481 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,487 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,494 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,501 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,509 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,516 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,522 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:39,532 creating build/bdist.linux-armv7l/wheel/sequana/rules 2021-10-13T10:38:39,536 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-10-13T10:38:39,539 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-10-13T10:38:39,548 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2021-10-13T10:38:39,552 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2021-10-13T10:38:39,560 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-10-13T10:38:39,563 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-10-13T10:38:39,570 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-10-13T10:38:39,573 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-10-13T10:38:39,579 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-10-13T10:38:39,583 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-10-13T10:38:39,592 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco 2021-10-13T10:38:39,596 copying build/lib/sequana/rules/falco/falco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco 2021-10-13T10:38:39,604 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-10-13T10:38:39,607 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-10-13T10:38:39,613 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-10-13T10:38:39,616 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-10-13T10:38:39,624 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-10-13T10:38:39,629 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-10-13T10:38:39,633 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-10-13T10:38:39,642 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-10-13T10:38:39,648 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-10-13T10:38:39,651 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-10-13T10:38:39,658 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-10-13T10:38:39,660 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-10-13T10:38:39,667 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-10-13T10:38:39,669 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-10-13T10:38:39,676 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-10-13T10:38:39,679 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-10-13T10:38:39,686 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-10-13T10:38:39,692 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-10-13T10:38:39,696 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-10-13T10:38:39,705 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-10-13T10:38:39,708 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-10-13T10:38:39,715 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-10-13T10:38:39,718 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-10-13T10:38:39,723 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-10-13T10:38:39,731 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-10-13T10:38:39,734 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-10-13T10:38:39,742 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-10-13T10:38:39,744 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-10-13T10:38:39,750 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-10-13T10:38:39,752 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-10-13T10:38:39,758 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-10-13T10:38:39,760 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-10-13T10:38:39,767 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-10-13T10:38:39,769 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-10-13T10:38:39,777 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-10-13T10:38:39,781 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-10-13T10:38:39,784 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-10-13T10:38:39,790 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-10-13T10:38:39,792 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-10-13T10:38:39,796 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-10-13T10:38:39,801 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-10-13T10:38:39,802 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-10-13T10:38:39,809 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-10-13T10:38:39,813 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-10-13T10:38:39,822 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-10-13T10:38:39,827 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2021-10-13T10:38:39,832 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-10-13T10:38:39,835 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-10-13T10:38:39,841 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-10-13T10:38:39,844 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-10-13T10:38:39,850 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-10-13T10:38:39,854 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-10-13T10:38:39,857 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-10-13T10:38:39,863 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-10-13T10:38:39,866 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-10-13T10:38:39,871 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-10-13T10:38:39,876 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-10-13T10:38:39,879 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-10-13T10:38:39,885 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-10-13T10:38:39,888 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-10-13T10:38:39,894 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2021-10-13T10:38:39,898 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-10-13T10:38:39,901 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-10-13T10:38:39,907 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-10-13T10:38:39,910 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-10-13T10:38:39,916 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-10-13T10:38:39,919 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-10-13T10:38:39,925 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-10-13T10:38:39,928 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-10-13T10:38:39,935 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-10-13T10:38:39,937 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-10-13T10:38:39,944 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-10-13T10:38:39,948 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-10-13T10:38:39,951 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-10-13T10:38:39,960 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-10-13T10:38:39,964 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-10-13T10:38:39,971 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-10-13T10:38:39,976 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-10-13T10:38:39,979 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-10-13T10:38:39,985 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-10-13T10:38:39,988 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-10-13T10:38:39,994 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-10-13T10:38:39,997 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-10-13T10:38:40,004 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-10-13T10:38:40,008 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-10-13T10:38:40,011 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-10-13T10:38:40,020 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-10-13T10:38:40,022 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-10-13T10:38:40,028 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-10-13T10:38:40,034 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-10-13T10:38:40,036 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-10-13T10:38:40,041 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-10-13T10:38:40,043 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-10-13T10:38:40,050 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-10-13T10:38:40,053 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-10-13T10:38:40,056 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-10-13T10:38:40,064 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-10-13T10:38:40,066 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-10-13T10:38:40,073 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-10-13T10:38:40,075 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-10-13T10:38:40,081 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-10-13T10:38:40,083 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-10-13T10:38:40,087 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-10-13T10:38:40,091 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-10-13T10:38:40,093 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-10-13T10:38:40,101 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2021-10-13T10:38:40,105 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2021-10-13T10:38:40,108 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2021-10-13T10:38:40,115 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-10-13T10:38:40,117 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-10-13T10:38:40,123 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-10-13T10:38:40,125 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-10-13T10:38:40,131 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-10-13T10:38:40,132 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-10-13T10:38:40,141 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-10-13T10:38:40,145 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-10-13T10:38:40,148 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-10-13T10:38:40,155 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-10-13T10:38:40,157 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-10-13T10:38:40,162 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-10-13T10:38:40,164 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-10-13T10:38:40,170 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-10-13T10:38:40,171 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-10-13T10:38:40,178 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-10-13T10:38:40,181 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-10-13T10:38:40,188 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-10-13T10:38:40,190 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-10-13T10:38:40,197 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-10-13T10:38:40,199 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-10-13T10:38:40,204 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-10-13T10:38:40,206 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-10-13T10:38:40,211 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-10-13T10:38:40,213 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-10-13T10:38:40,219 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-10-13T10:38:40,225 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-10-13T10:38:40,227 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-10-13T10:38:40,234 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-10-13T10:38:40,237 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-10-13T10:38:40,242 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-10-13T10:38:40,244 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-10-13T10:38:40,249 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-10-13T10:38:40,251 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-10-13T10:38:40,256 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-10-13T10:38:40,259 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-10-13T10:38:40,266 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-10-13T10:38:40,269 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-10-13T10:38:40,276 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2021-10-13T10:38:40,278 copying build/lib/sequana/rules/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2021-10-13T10:38:40,282 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-10-13T10:38:40,287 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-10-13T10:38:40,288 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-10-13T10:38:40,294 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-10-13T10:38:40,296 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-10-13T10:38:40,303 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-10-13T10:38:40,305 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-10-13T10:38:40,310 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-10-13T10:38:40,317 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-10-13T10:38:40,319 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-10-13T10:38:40,325 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-10-13T10:38:40,327 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-10-13T10:38:40,330 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-10-13T10:38:40,335 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-10-13T10:38:40,337 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-10-13T10:38:40,344 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-10-13T10:38:40,347 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-10-13T10:38:40,354 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-10-13T10:38:40,357 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-10-13T10:38:40,362 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-10-13T10:38:40,364 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-10-13T10:38:40,370 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-10-13T10:38:40,372 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-10-13T10:38:40,377 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-10-13T10:38:40,383 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-10-13T10:38:40,386 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-10-13T10:38:40,393 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-10-13T10:38:40,396 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-10-13T10:38:40,403 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-10-13T10:38:40,406 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-10-13T10:38:40,408 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-10-13T10:38:40,414 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-10-13T10:38:40,416 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-10-13T10:38:40,422 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-10-13T10:38:40,425 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-10-13T10:38:40,432 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-10-13T10:38:40,435 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-10-13T10:38:40,441 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-10-13T10:38:40,445 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-10-13T10:38:40,447 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-10-13T10:38:40,452 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-10-13T10:38:40,454 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-10-13T10:38:40,459 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2021-10-13T10:38:40,462 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2021-10-13T10:38:40,469 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-10-13T10:38:40,472 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-10-13T10:38:40,479 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-10-13T10:38:40,481 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-10-13T10:38:40,487 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-10-13T10:38:40,490 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-10-13T10:38:40,492 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-10-13T10:38:40,498 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-10-13T10:38:40,499 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-10-13T10:38:40,506 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2021-10-13T10:38:40,509 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2021-10-13T10:38:40,515 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-10-13T10:38:40,521 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-10-13T10:38:40,523 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-10-13T10:38:40,528 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-10-13T10:38:40,530 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-10-13T10:38:40,535 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-10-13T10:38:40,537 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-10-13T10:38:40,543 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-10-13T10:38:40,546 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-10-13T10:38:40,553 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-10-13T10:38:40,555 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-10-13T10:38:40,563 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-10-13T10:38:40,564 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-10-13T10:38:40,570 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-10-13T10:38:40,572 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-10-13T10:38:40,577 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-10-13T10:38:40,579 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-10-13T10:38:40,585 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-10-13T10:38:40,587 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-10-13T10:38:40,595 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-10-13T10:38:40,597 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-10-13T10:38:40,605 creating build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-10-13T10:38:40,607 copying build/lib/sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-10-13T10:38:40,612 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-10-13T10:38:40,614 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-10-13T10:38:40,620 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-10-13T10:38:40,622 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-10-13T10:38:40,629 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-10-13T10:38:40,631 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-10-13T10:38:40,641 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-10-13T10:38:40,649 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-10-13T10:38:40,655 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-10-13T10:38:40,660 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-10-13T10:38:40,668 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,670 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,677 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,684 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,690 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,695 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,699 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,704 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,711 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,717 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,722 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,729 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,736 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,743 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-10-13T10:38:40,749 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,754 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,759 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,765 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,771 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,779 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,785 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,796 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,804 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,811 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,818 creating build/bdist.linux-armv7l/wheel/sequana/plots 2021-10-13T10:38:40,820 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-10-13T10:38:40,827 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-10-13T10:38:40,834 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-10-13T10:38:40,840 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,848 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,853 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,859 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,866 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,871 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,879 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:40,889 creating build/bdist.linux-armv7l/wheel/sequana/resources 2021-10-13T10:38:40,893 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-10-13T10:38:40,895 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-10-13T10:38:40,901 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-10-13T10:38:40,905 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-10-13T10:38:40,907 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-10-13T10:38:40,915 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-10-13T10:38:40,919 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-10-13T10:38:40,925 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-10-13T10:38:40,933 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-10-13T10:38:40,936 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-10-13T10:38:40,942 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-10-13T10:38:40,947 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-10-13T10:38:40,952 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-10-13T10:38:40,956 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-10-13T10:38:40,961 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-10-13T10:38:40,963 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-10-13T10:38:40,980 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-10-13T10:38:40,985 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-10-13T10:38:40,992 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-10-13T10:38:40,996 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-10-13T10:38:41,003 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-10-13T10:38:41,012 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,014 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,018 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,031 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,045 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,053 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,068 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,099 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,127 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,132 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,145 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,150 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,157 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,163 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,167 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-10-13T10:38:41,177 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-10-13T10:38:41,180 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-10-13T10:38:41,185 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-10-13T10:38:41,191 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2021-10-13T10:38:41,197 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2021-10-13T10:38:41,200 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2021-10-13T10:38:41,202 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2021-10-13T10:38:41,206 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2021-10-13T10:38:41,214 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,216 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,220 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,225 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,230 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,238 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,245 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,265 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,269 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,275 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,288 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,295 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,300 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,304 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,310 copying build/lib/sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,314 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,321 copying build/lib/sequana/resources/testing/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,326 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,333 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,341 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,346 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2021-10-13T10:38:41,348 copying build/lib/sequana/resources/testing/featurecounts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2021-10-13T10:38:41,353 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2021-10-13T10:38:41,356 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-10-13T10:38:41,360 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-10-13T10:38:41,363 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-10-13T10:38:41,369 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-10-13T10:38:41,376 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-10-13T10:38:41,378 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-10-13T10:38:41,383 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-10-13T10:38:41,386 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-10-13T10:38:41,391 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-10-13T10:38:41,393 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-10-13T10:38:41,397 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-10-13T10:38:41,404 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2021-10-13T10:38:41,408 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-10-13T10:38:41,411 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-10-13T10:38:41,417 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-10-13T10:38:41,422 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-10-13T10:38:41,424 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-10-13T10:38:41,428 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-10-13T10:38:41,433 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-10-13T10:38:41,435 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-10-13T10:38:41,440 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-10-13T10:38:41,445 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2021-10-13T10:38:41,450 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,456 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,461 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,465 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,469 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,473 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,477 copying build/lib/sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,483 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,488 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,502 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,506 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,515 copying build/lib/sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,519 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,525 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,559 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,567 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,576 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,602 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,609 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,615 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,624 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,781 copying build/lib/sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,787 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,795 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,800 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,807 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,813 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,821 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,839 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,843 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,881 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,893 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,899 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,905 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,912 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,955 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:41,962 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,005 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,012 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,020 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,026 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,031 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,036 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,048 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,056 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,065 copying build/lib/sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,072 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,079 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,090 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,097 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,105 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,112 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,119 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,125 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,130 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,135 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,141 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,212 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,219 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,226 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,241 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-10-13T10:38:42,264 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-10-13T10:38:42,267 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-10-13T10:38:42,275 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-10-13T10:38:42,283 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-10-13T10:38:42,293 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-10-13T10:38:42,299 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,302 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,309 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,317 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,345 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,354 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,361 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,416 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,452 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,468 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,487 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,574 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,584 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:42,592 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,043 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,053 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,071 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,114 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,121 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,130 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,137 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,144 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,185 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,190 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,240 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,249 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,697 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,704 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,722 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,733 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,742 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,756 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-10-13T10:38:43,765 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-10-13T10:38:43,767 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-10-13T10:38:43,773 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-10-13T10:38:43,781 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,788 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,794 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,808 creating build/bdist.linux-armv7l/wheel/sequana/utils 2021-10-13T10:38:43,812 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-10-13T10:38:43,821 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-10-13T10:38:43,830 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-10-13T10:38:43,835 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-10-13T10:38:43,841 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-10-13T10:38:43,845 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-10-13T10:38:43,850 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,861 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,869 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,878 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,885 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,892 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,901 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,911 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2021-10-13T10:38:43,915 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2021-10-13T10:38:43,925 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2021-10-13T10:38:43,929 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2021-10-13T10:38:43,937 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,945 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,953 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,959 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,965 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,977 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,984 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,991 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:43,999 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,007 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,010 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,016 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,024 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,032 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,040 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,048 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,054 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,061 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,070 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,077 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,083 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,089 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,095 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,102 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,108 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,114 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,121 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,128 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,136 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,144 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-10-13T10:38:44,150 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,156 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,164 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,173 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,182 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,188 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,195 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,202 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,210 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,212 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,219 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,225 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,235 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,241 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,246 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,250 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,256 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,262 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,273 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,281 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-10-13T10:38:44,289 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,296 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,304 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,311 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,317 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,322 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2021-10-13T10:38:44,330 running install_egg_info 2021-10-13T10:38:44,374 running egg_info 2021-10-13T10:38:44,377 writing top-level names to sequana.egg-info/top_level.txt 2021-10-13T10:38:44,380 writing sequana.egg-info/PKG-INFO 2021-10-13T10:38:44,386 writing requirements to sequana.egg-info/requires.txt 2021-10-13T10:38:44,390 writing dependency_links to sequana.egg-info/dependency_links.txt 2021-10-13T10:38:44,395 writing entry points to sequana.egg-info/entry_points.txt 2021-10-13T10:38:44,634 reading manifest file 'sequana.egg-info/SOURCES.txt' 2021-10-13T10:38:44,666 reading manifest template 'MANIFEST.in' 2021-10-13T10:38:44,675 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-10-13T10:38:44,683 warning: no previously-included files matching '*pyc' found under directory '*' 2021-10-13T10:38:46,963 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-10-13T10:38:46,970 warning: no previously-included files matching '*' found under directory 'test' 2021-10-13T10:38:46,976 warning: no previously-included files found matching 'sequana/rm2.py' 2021-10-13T10:38:47,059 writing manifest file 'sequana.egg-info/SOURCES.txt' 2021-10-13T10:38:47,065 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.12.4-py3.5.egg-info 2021-10-13T10:38:47,105 running install_scripts 2021-10-13T10:38:47,440 creating build/bdist.linux-armv7l/wheel/sequana-0.12.4.dist-info/WHEEL 2021-10-13T10:38:55,070 Building wheel for sequana (setup.py): finished with status 'done' 2021-10-13T10:38:55,298 Created wheel for sequana: filename=sequana-0.12.4-py3-none-any.whl size=13773476 sha256=3de4786e76758111e1567b0011033b869e5422311e7ea1ebe559ddcdfd87bf5b 2021-10-13T10:38:55,299 Stored in directory: /tmp/pip-ephem-wheel-cache-bxb3idqo/wheels/bd/c8/16/58bb1d44aed1d322a89cd55775877ec4591cdbbac0baaf900a 2021-10-13T10:38:55,366 Successfully built sequana 2021-10-13T10:38:57,742 Removed build tracker: '/tmp/pip-req-tracker-8jdv97jl'