2021-10-19T22:03:24,244 Created temporary directory: /tmp/pip-ephem-wheel-cache-nyc2ecwp
2021-10-19T22:03:24,247 Created temporary directory: /tmp/pip-req-tracker-tntfdi15
2021-10-19T22:03:24,248 Initialized build tracking at /tmp/pip-req-tracker-tntfdi15
2021-10-19T22:03:24,248 Created build tracker: /tmp/pip-req-tracker-tntfdi15
2021-10-19T22:03:24,248 Entered build tracker: /tmp/pip-req-tracker-tntfdi15
2021-10-19T22:03:24,249 Created temporary directory: /tmp/pip-wheel-ozj2soje
2021-10-19T22:03:24,281 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-10-19T22:03:24,283 2 location(s) to search for versions of unifrac:
2021-10-19T22:03:24,283 * https://pypi.org/simple/unifrac/
2021-10-19T22:03:24,283 * https://www.piwheels.org/simple/unifrac/
2021-10-19T22:03:24,284 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/
2021-10-19T22:03:24,284 Getting page https://pypi.org/simple/unifrac/
2021-10-19T22:03:24,286 Found index url https://pypi.org/simple
2021-10-19T22:03:24,376   Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz#sha256=94b4a1b146b35ee7f855ae602cedfab2ca179cc87e397d535fd3e7f64d4d7349 (from https://pypi.org/simple/unifrac/), version: 0.10.0
2021-10-19T22:03:24,376   Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz#sha256=e851bd56269d16b5d005e20c92af4c566bf98ceebca4901085cdb68df6183afd (from https://pypi.org/simple/unifrac/), version: 0.20.1
2021-10-19T22:03:24,376   Found link https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz#sha256=ad6cfd76d4379080321cf640a39da30f745168ce7896ab21893de85a2f43dc1d (from https://pypi.org/simple/unifrac/), version: 0.20.3
2021-10-19T22:03:24,377 Fetching project page and analyzing links: https://www.piwheels.org/simple/unifrac/
2021-10-19T22:03:24,377 Getting page https://www.piwheels.org/simple/unifrac/
2021-10-19T22:03:24,378 Found index url https://www.piwheels.org/simple
2021-10-19T22:03:24,560 Skipping link: not a file: https://www.piwheels.org/simple/unifrac/
2021-10-19T22:03:24,560 Skipping link: not a file: https://pypi.org/simple/unifrac/
2021-10-19T22:03:24,579 Given no hashes to check 1 links for project 'unifrac': discarding no candidates
2021-10-19T22:03:24,598 Collecting unifrac==0.20.3
2021-10-19T22:03:24,600   Created temporary directory: /tmp/pip-unpack-45ot3sox
2021-10-19T22:03:24,653   Downloading unifrac-0.20.3.tar.gz (258 kB)
2021-10-19T22:03:24,914   Added unifrac==0.20.3 from https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz#sha256=ad6cfd76d4379080321cf640a39da30f745168ce7896ab21893de85a2f43dc1d to build tracker '/tmp/pip-req-tracker-tntfdi15'
2021-10-19T22:03:24,915     Running setup.py (path:/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py) egg_info for package unifrac
2021-10-19T22:03:24,916     Created temporary directory: /tmp/pip-pip-egg-info-0hgwqa3n
2021-10-19T22:03:24,917     Running command python setup.py egg_info
2021-10-19T22:03:27,027     running egg_info
2021-10-19T22:03:27,030     creating /tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info
2021-10-19T22:03:27,031     writing /tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info/PKG-INFO
2021-10-19T22:03:27,033     writing dependency_links to /tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info/dependency_links.txt
2021-10-19T22:03:27,036     writing requirements to /tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info/requires.txt
2021-10-19T22:03:27,037     writing top-level names to /tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info/top_level.txt
2021-10-19T22:03:27,038     writing manifest file '/tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info/SOURCES.txt'
2021-10-19T22:03:27,193     reading manifest file '/tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info/SOURCES.txt'
2021-10-19T22:03:27,195     reading manifest template 'MANIFEST.in'
2021-10-19T22:03:27,203     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-10-19T22:03:27,204     warning: no previously-included files matching '*.pyo' found anywhere in distribution
2021-10-19T22:03:27,204     warning: no previously-included files matching '.git' found anywhere in distribution
2021-10-19T22:03:27,205     warning: no previously-included files matching '*.so' found anywhere in distribution
2021-10-19T22:03:27,205     warning: no previously-included files matching '.*.swp' found anywhere in distribution
2021-10-19T22:03:27,206     adding license file 'LICENSE'
2021-10-19T22:03:27,209     writing manifest file '/tmp/pip-pip-egg-info-0hgwqa3n/unifrac.egg-info/SOURCES.txt'
2021-10-19T22:03:27,336   Source in /tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c has version 0.20.3, which satisfies requirement unifrac==0.20.3 from https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz#sha256=ad6cfd76d4379080321cf640a39da30f745168ce7896ab21893de85a2f43dc1d
2021-10-19T22:03:27,337   Removed unifrac==0.20.3 from https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz#sha256=ad6cfd76d4379080321cf640a39da30f745168ce7896ab21893de85a2f43dc1d from build tracker '/tmp/pip-req-tracker-tntfdi15'
2021-10-19T22:03:27,343 Created temporary directory: /tmp/pip-unpack-6i1d7e1q
2021-10-19T22:03:27,344 Building wheels for collected packages: unifrac
2021-10-19T22:03:27,348   Created temporary directory: /tmp/pip-wheel-guc7ahza
2021-10-19T22:03:27,349   Building wheel for unifrac (setup.py): started
2021-10-19T22:03:27,349   Destination directory: /tmp/pip-wheel-guc7ahza
2021-10-19T22:03:27,349   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-guc7ahza
2021-10-19T22:03:29,160   running bdist_wheel
2021-10-19T22:03:29,164   running build
2021-10-19T22:03:29,165   running build_py
2021-10-19T22:03:29,299   creating build
2021-10-19T22:03:29,300   creating build/lib.linux-armv7l-3.9
2021-10-19T22:03:29,300   creating build/lib.linux-armv7l-3.9/unifrac
2021-10-19T22:03:29,301   copying unifrac/_meta.py -> build/lib.linux-armv7l-3.9/unifrac
2021-10-19T22:03:29,304   copying unifrac/_methods.py -> build/lib.linux-armv7l-3.9/unifrac
2021-10-19T22:03:29,308   copying unifrac/__init__.py -> build/lib.linux-armv7l-3.9/unifrac
2021-10-19T22:03:29,310   creating build/lib.linux-armv7l-3.9/unifrac/tests
2021-10-19T22:03:29,311   copying unifrac/tests/test_methods.py -> build/lib.linux-armv7l-3.9/unifrac/tests
2021-10-19T22:03:29,314   copying unifrac/tests/__init__.py -> build/lib.linux-armv7l-3.9/unifrac/tests
2021-10-19T22:03:29,316   copying unifrac/tests/test_api.py -> build/lib.linux-armv7l-3.9/unifrac/tests
2021-10-19T22:03:29,320   creating build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,321   copying unifrac/tests/data/crawford.tre -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,324   copying unifrac/tests/data/t1.newick -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,327   copying unifrac/tests/data/e2.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,331   copying unifrac/tests/data/t2.newick -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,333   copying unifrac/tests/data/crawford.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,340   copying unifrac/tests/data/test.faith.exp -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,343   copying unifrac/tests/data/bad_tips.tre -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,346   copying unifrac/tests/data/e1.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-10-19T22:03:29,351   running build_ext
2021-10-19T22:03:29,353   Compiling SSU
2021-10-19T22:03:29,767   rm -f *.o ssu
2021-10-19T22:03:30,080   h5c++ -fopenmp -mfma -march=native -Wextra -Wno-unused-parameter -Wall  -std=c++11 -pedantic -I. -O4 -fPIC -L/lib -c tree.cpp -o tree.o
2021-10-19T22:03:30,121   arm-linux-gnueabihf-g++: error: unrecognized command-line option ‘-mfma’
2021-10-19T22:03:30,123   make: *** [Makefile:139: tree.o] Error 1
2021-10-19T22:03:30,125   Traceback (most recent call last):
2021-10-19T22:03:30,125     File "<string>", line 1, in <module>
2021-10-19T22:03:30,125     File "/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py", line 100, in <module>
2021-10-19T22:03:30,126       setup(
2021-10-19T22:03:30,127     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup
2021-10-19T22:03:30,127       return distutils.core.setup(**attrs)
2021-10-19T22:03:30,128     File "/usr/lib/python3.9/distutils/core.py", line 148, in setup
2021-10-19T22:03:30,128       dist.run_commands()
2021-10-19T22:03:30,128     File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands
2021-10-19T22:03:30,129       self.run_command(cmd)
2021-10-19T22:03:30,130     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-10-19T22:03:30,131       cmd_obj.run()
2021-10-19T22:03:30,131     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run
2021-10-19T22:03:30,131       self.run_command('build')
2021-10-19T22:03:30,132     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-10-19T22:03:30,132       self.distribution.run_command(command)
2021-10-19T22:03:30,133     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-10-19T22:03:30,134       cmd_obj.run()
2021-10-19T22:03:30,134     File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run
2021-10-19T22:03:30,134       self.run_command(cmd_name)
2021-10-19T22:03:30,134     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-10-19T22:03:30,135       self.distribution.run_command(command)
2021-10-19T22:03:30,135     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-10-19T22:03:30,136       cmd_obj.run()
2021-10-19T22:03:30,137     File "/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py", line 61, in run
2021-10-19T22:03:30,137       self.run_compile_ssu()
2021-10-19T22:03:30,137     File "/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py", line 65, in run_compile_ssu
2021-10-19T22:03:30,137       self.execute(compile_ssu, [], 'Compiling SSU')
2021-10-19T22:03:30,138     File "/usr/lib/python3.9/distutils/cmd.py", line 335, in execute
2021-10-19T22:03:30,138       util.execute(func, args, msg, dry_run=self.dry_run)
2021-10-19T22:03:30,138     File "/usr/lib/python3.9/distutils/util.py", line 304, in execute
2021-10-19T22:03:30,139       func(*args)
2021-10-19T22:03:30,139     File "/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py", line 44, in compile_ssu
2021-10-19T22:03:30,139       raise Exception('Error compiling ssu!')
2021-10-19T22:03:30,140   Exception: Error compiling ssu!
2021-10-19T22:03:30,282   Building wheel for unifrac (setup.py): finished with status 'error'
2021-10-19T22:03:30,283   ERROR: Failed building wheel for unifrac
2021-10-19T22:03:30,284   Running setup.py clean for unifrac
2021-10-19T22:03:30,284   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ozj2soje/unifrac_1e9072fc83ed42f3b06c4ff147264e8c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-10-19T22:03:32,077   running clean
2021-10-19T22:03:32,080   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-10-19T22:03:32,087   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-10-19T22:03:32,088   'build/scripts-3.9' does not exist -- can't clean it
2021-10-19T22:03:32,088   removing 'build'
2021-10-19T22:03:32,208 Failed to build unifrac
2021-10-19T22:03:32,208 ERROR: Failed to build one or more wheels
2021-10-19T22:03:32,209 Exception information:
2021-10-19T22:03:32,209 Traceback (most recent call last):
2021-10-19T22:03:32,209   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-10-19T22:03:32,209     status = self.run(options, args)
2021-10-19T22:03:32,209   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-10-19T22:03:32,209     return func(self, options, args)
2021-10-19T22:03:32,209   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-10-19T22:03:32,209     raise CommandError(
2021-10-19T22:03:32,209 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-10-19T22:03:32,212 Removed build tracker: '/tmp/pip-req-tracker-tntfdi15'