2021-10-20T22:38:31,718 Created temporary directory: /tmp/pip-ephem-wheel-cache-q8s9mkxy 2021-10-20T22:38:31,724 Created temporary directory: /tmp/pip-req-tracker-r8betrxe 2021-10-20T22:38:31,725 Initialized build tracking at /tmp/pip-req-tracker-r8betrxe 2021-10-20T22:38:31,725 Created build tracker: /tmp/pip-req-tracker-r8betrxe 2021-10-20T22:38:31,726 Entered build tracker: /tmp/pip-req-tracker-r8betrxe 2021-10-20T22:38:31,727 Created temporary directory: /tmp/pip-wheel-vt8grvt8 2021-10-20T22:38:31,792 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-10-20T22:38:31,795 2 location(s) to search for versions of meeko: 2021-10-20T22:38:31,795 * https://pypi.org/simple/meeko/ 2021-10-20T22:38:31,795 * https://www.piwheels.org/simple/meeko/ 2021-10-20T22:38:31,796 Fetching project page and analyzing links: https://pypi.org/simple/meeko/ 2021-10-20T22:38:31,798 Getting page https://pypi.org/simple/meeko/ 2021-10-20T22:38:31,802 Found index url https://pypi.org/simple 2021-10-20T22:38:32,132 Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/38/c7/946dda1732a3aeca878b9cf1aa1a965066488479d67e4fc137d2379a79b6/meeko-0.1.dev1-py2.py3-none-any.whl#sha256=9a3e03dc1e780f24a412d0cea91c73d96ecb75561622561c6871365e491f99a2 (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*) 2021-10-20T22:38:32,133 Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/61/30/79ecf599df2c81ead389544f3291774adddccb3ac4548eae61a7b8a62bc3/meeko-0.1.dev2-py2.py3-none-any.whl#sha256=de1c6b5ef311779c9dca7fc9b697da1cc8095d163f31d31f1fcc20729d2fefed (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*) 2021-10-20T22:38:32,133 Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/89/84/827a0ea853ba0970f0287eb09ba7d07186590a510d10a8b63a2d884ac447/meeko-0.1.dev3-py2.py3-none-any.whl#sha256=feb4d48b05302efc1168ac2365ebfa920dd98fe24fca3f5cafe60376ed796caa (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*) 2021-10-20T22:38:32,135 Found link https://files.pythonhosted.org/packages/ec/d2/c1eaf8b818377fbe788daf86dc8994fcc4ae2d4b6fa00c2a5c81d8aa2ca6/meeko-0.1.dev3.tar.gz#sha256=1444eb5490a39db4b95c0df579d0394215625dbe1ba1a5f2af0fa4e05a5de98c (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.1.dev3 2021-10-20T22:38:32,136 Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/f1/b6/fe6205ca310917d121b6f96259c845d94ef627d7473fc2bd119235b5b8d3/meeko-0.2-py3-none-any.whl#sha256=04fabc5b35550f37a9a9e02f8972662a9a97b0a917b36dbd6a3ce2d8164af3d4 (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*) 2021-10-20T22:38:32,137 Found link https://files.pythonhosted.org/packages/23/24/36f5b53aa74cd50f5e6cea8d5d5f3b99b6f3ea1e2a059d13f5f8d51a0624/meeko-0.2.tar.gz#sha256=699dfca9b57dbe646dcc47c147a5ba538a9eeeb6f16f48d2712692b7bf90904d (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.2 2021-10-20T22:38:32,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/meeko/ 2021-10-20T22:38:32,139 Getting page https://www.piwheels.org/simple/meeko/ 2021-10-20T22:38:32,141 Found index url https://www.piwheels.org/simple 2021-10-20T22:38:32,378 Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.1.dev3-py2.py3-none-any.whl#sha256=feb4d48b05302efc1168ac2365ebfa920dd98fe24fca3f5cafe60376ed796caa (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*) 2021-10-20T22:38:32,408 Given no hashes to check 1 links for project 'meeko': discarding no candidates 2021-10-20T22:38:32,440 Collecting meeko==0.2 2021-10-20T22:38:32,443 Created temporary directory: /tmp/pip-unpack-wccfgbmo 2021-10-20T22:38:32,686 Downloading meeko-0.2.tar.gz (54 kB) 2021-10-20T22:38:32,935 Added meeko==0.2 from https://files.pythonhosted.org/packages/23/24/36f5b53aa74cd50f5e6cea8d5d5f3b99b6f3ea1e2a059d13f5f8d51a0624/meeko-0.2.tar.gz#sha256=699dfca9b57dbe646dcc47c147a5ba538a9eeeb6f16f48d2712692b7bf90904d to build tracker '/tmp/pip-req-tracker-r8betrxe' 2021-10-20T22:38:32,937 Running setup.py (path:/tmp/pip-wheel-vt8grvt8/meeko_625effc90596407a8c89bec5bf87a6a9/setup.py) egg_info for package meeko 2021-10-20T22:38:32,939 Created temporary directory: /tmp/pip-pip-egg-info-g65vi6g7 2021-10-20T22:38:32,940 Running command python setup.py egg_info 2021-10-20T22:38:34,855 running egg_info 2021-10-20T22:38:34,860 creating /tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info 2021-10-20T22:38:34,862 writing requirements to /tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info/requires.txt 2021-10-20T22:38:34,866 writing top-level names to /tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info/top_level.txt 2021-10-20T22:38:34,869 writing /tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info/PKG-INFO 2021-10-20T22:38:34,875 writing dependency_links to /tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info/dependency_links.txt 2021-10-20T22:38:34,879 writing manifest file '/tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info/SOURCES.txt' 2021-10-20T22:38:35,260 reading manifest file '/tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info/SOURCES.txt' 2021-10-20T22:38:35,269 writing manifest file '/tmp/pip-pip-egg-info-g65vi6g7/meeko.egg-info/SOURCES.txt' 2021-10-20T22:38:35,406 Source in /tmp/pip-wheel-vt8grvt8/meeko_625effc90596407a8c89bec5bf87a6a9 has version 0.2, which satisfies requirement meeko==0.2 from https://files.pythonhosted.org/packages/23/24/36f5b53aa74cd50f5e6cea8d5d5f3b99b6f3ea1e2a059d13f5f8d51a0624/meeko-0.2.tar.gz#sha256=699dfca9b57dbe646dcc47c147a5ba538a9eeeb6f16f48d2712692b7bf90904d 2021-10-20T22:38:35,408 Removed meeko==0.2 from https://files.pythonhosted.org/packages/23/24/36f5b53aa74cd50f5e6cea8d5d5f3b99b6f3ea1e2a059d13f5f8d51a0624/meeko-0.2.tar.gz#sha256=699dfca9b57dbe646dcc47c147a5ba538a9eeeb6f16f48d2712692b7bf90904d from build tracker '/tmp/pip-req-tracker-r8betrxe' 2021-10-20T22:38:35,422 Created temporary directory: /tmp/pip-unpack-mjbw9jhm 2021-10-20T22:38:35,423 Building wheels for collected packages: meeko 2021-10-20T22:38:35,432 Created temporary directory: /tmp/pip-wheel-o6jme5gh 2021-10-20T22:38:35,433 Building wheel for meeko (setup.py): started 2021-10-20T22:38:35,434 Destination directory: /tmp/pip-wheel-o6jme5gh 2021-10-20T22:38:35,434 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vt8grvt8/meeko_625effc90596407a8c89bec5bf87a6a9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vt8grvt8/meeko_625effc90596407a8c89bec5bf87a6a9/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-o6jme5gh 2021-10-20T22:38:37,300 running bdist_wheel 2021-10-20T22:38:37,317 running build 2021-10-20T22:38:37,318 running build_py 2021-10-20T22:38:37,650 creating build 2021-10-20T22:38:37,651 creating build/lib 2021-10-20T22:38:37,652 creating build/lib/meeko 2021-10-20T22:38:37,655 copying meeko/atomtyper.py -> build/lib/meeko 2021-10-20T22:38:37,662 copying meeko/hydrate.py -> build/lib/meeko 2021-10-20T22:38:37,667 copying meeko/writer.py -> build/lib/meeko 2021-10-20T22:38:37,673 copying meeko/setup.py -> build/lib/meeko 2021-10-20T22:38:37,679 copying meeko/preparation.py -> build/lib/meeko 2021-10-20T22:38:37,684 copying meeko/gen3d.py -> build/lib/meeko 2021-10-20T22:38:37,690 copying meeko/molecule_pdbqt.py -> build/lib/meeko 2021-10-20T22:38:37,699 copying meeko/bondtyper.py -> build/lib/meeko 2021-10-20T22:38:37,704 copying meeko/receptor_pdbqt.py -> build/lib/meeko 2021-10-20T22:38:37,710 copying meeko/macrocycle.py -> build/lib/meeko 2021-10-20T22:38:37,715 copying meeko/__init__.py -> build/lib/meeko 2021-10-20T22:38:37,719 copying meeko/flexibility.py -> build/lib/meeko 2021-10-20T22:38:37,726 creating build/lib/meeko/analysis 2021-10-20T22:38:37,729 copying meeko/analysis/interactions.py -> build/lib/meeko/analysis 2021-10-20T22:38:37,737 copying meeko/analysis/fingerprint_interactions.py -> build/lib/meeko/analysis 2021-10-20T22:38:37,743 copying meeko/analysis/__init__.py -> build/lib/meeko/analysis 2021-10-20T22:38:37,749 creating build/lib/meeko/utils 2021-10-20T22:38:37,751 copying meeko/utils/van_der_waals_radius_table.py -> build/lib/meeko/utils 2021-10-20T22:38:37,756 copying meeko/utils/geomutils.py -> build/lib/meeko/utils 2021-10-20T22:38:37,762 copying meeko/utils/utils.py -> build/lib/meeko/utils 2021-10-20T22:38:37,766 copying meeko/utils/__init__.py -> build/lib/meeko/utils 2021-10-20T22:38:37,771 copying meeko/utils/covalent_radius_table.py -> build/lib/meeko/utils 2021-10-20T22:38:37,777 copying meeko/utils/obutils.py -> build/lib/meeko/utils 2021-10-20T22:38:37,784 copying meeko/utils/autodock4_atom_types_elements.py -> build/lib/meeko/utils 2021-10-20T22:38:37,788 running egg_info 2021-10-20T22:38:37,824 writing requirements to meeko.egg-info/requires.txt 2021-10-20T22:38:37,826 writing dependency_links to meeko.egg-info/dependency_links.txt 2021-10-20T22:38:37,829 writing meeko.egg-info/PKG-INFO 2021-10-20T22:38:37,834 writing top-level names to meeko.egg-info/top_level.txt 2021-10-20T22:38:37,849 reading manifest file 'meeko.egg-info/SOURCES.txt' 2021-10-20T22:38:37,861 writing manifest file 'meeko.egg-info/SOURCES.txt' 2021-10-20T22:38:37,870 running build_scripts 2021-10-20T22:38:37,871 creating build/scripts-3.5 2021-10-20T22:38:37,874 copying and adjusting scripts/mk_prepare_ligand.py -> build/scripts-3.5 2021-10-20T22:38:37,879 copying and adjusting scripts/mk_copy_coords.py -> build/scripts-3.5 2021-10-20T22:38:37,882 changing mode of build/scripts-3.5/mk_prepare_ligand.py from 644 to 755 2021-10-20T22:38:37,883 changing mode of build/scripts-3.5/mk_copy_coords.py from 644 to 755 2021-10-20T22:38:37,890 installing to build/bdist.linux-armv7l/wheel 2021-10-20T22:38:37,891 running install 2021-10-20T22:38:37,893 running install_lib 2021-10-20T22:38:37,900 creating build/bdist.linux-armv7l 2021-10-20T22:38:37,901 creating build/bdist.linux-armv7l/wheel 2021-10-20T22:38:37,905 creating build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:37,908 creating build/bdist.linux-armv7l/wheel/meeko/analysis 2021-10-20T22:38:37,910 copying build/lib/meeko/analysis/interactions.py -> build/bdist.linux-armv7l/wheel/meeko/analysis 2021-10-20T22:38:37,916 copying build/lib/meeko/analysis/fingerprint_interactions.py -> build/bdist.linux-armv7l/wheel/meeko/analysis 2021-10-20T22:38:37,921 copying build/lib/meeko/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/meeko/analysis 2021-10-20T22:38:37,925 copying build/lib/meeko/atomtyper.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:37,931 copying build/lib/meeko/hydrate.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:37,939 creating build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,941 copying build/lib/meeko/utils/van_der_waals_radius_table.py -> build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,947 copying build/lib/meeko/utils/geomutils.py -> build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,954 copying build/lib/meeko/utils/utils.py -> build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,960 copying build/lib/meeko/utils/__init__.py -> build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,965 copying build/lib/meeko/utils/covalent_radius_table.py -> build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,971 copying build/lib/meeko/utils/obutils.py -> build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,977 copying build/lib/meeko/utils/autodock4_atom_types_elements.py -> build/bdist.linux-armv7l/wheel/meeko/utils 2021-10-20T22:38:37,982 copying build/lib/meeko/writer.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:37,989 copying build/lib/meeko/setup.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:37,997 copying build/lib/meeko/preparation.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,003 copying build/lib/meeko/gen3d.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,009 copying build/lib/meeko/molecule_pdbqt.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,016 copying build/lib/meeko/bondtyper.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,021 copying build/lib/meeko/receptor_pdbqt.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,026 copying build/lib/meeko/macrocycle.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,031 copying build/lib/meeko/__init__.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,036 copying build/lib/meeko/flexibility.py -> build/bdist.linux-armv7l/wheel/meeko 2021-10-20T22:38:38,042 running install_data 2021-10-20T22:38:38,050 creating build/bdist.linux-armv7l/wheel/meeko-0.2.data 2021-10-20T22:38:38,051 creating build/bdist.linux-armv7l/wheel/meeko-0.2.data/data 2021-10-20T22:38:38,054 copying README.md -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/data/ 2021-10-20T22:38:38,058 copying LICENSE -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/data/ 2021-10-20T22:38:38,063 creating build/bdist.linux-armv7l/wheel/meeko-0.2.data/data/scripts 2021-10-20T22:38:38,065 copying scripts/mk_prepare_ligand.py -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/data/scripts 2021-10-20T22:38:38,071 copying scripts/x.py -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/data/scripts 2021-10-20T22:38:38,076 copying scripts/mk_prepare_ligand.py.orig -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/data/scripts 2021-10-20T22:38:38,083 copying scripts/mk_copy_coords.py -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/data/scripts 2021-10-20T22:38:38,088 running install_egg_info 2021-10-20T22:38:38,116 Copying meeko.egg-info to build/bdist.linux-armv7l/wheel/meeko-0.2-py3.5.egg-info 2021-10-20T22:38:38,146 running install_scripts 2021-10-20T22:38:38,288 creating build/bdist.linux-armv7l/wheel/meeko-0.2.data/scripts 2021-10-20T22:38:38,290 copying build/scripts-3.5/mk_prepare_ligand.py -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/scripts 2021-10-20T22:38:38,297 copying build/scripts-3.5/mk_copy_coords.py -> build/bdist.linux-armv7l/wheel/meeko-0.2.data/scripts 2021-10-20T22:38:38,302 changing mode of build/bdist.linux-armv7l/wheel/meeko-0.2.data/scripts/mk_prepare_ligand.py to 755 2021-10-20T22:38:38,303 changing mode of build/bdist.linux-armv7l/wheel/meeko-0.2.data/scripts/mk_copy_coords.py to 755 2021-10-20T22:38:38,366 creating build/bdist.linux-armv7l/wheel/meeko-0.2.dist-info/WHEEL 2021-10-20T22:38:38,735 Building wheel for meeko (setup.py): finished with status 'done' 2021-10-20T22:38:38,740 Created wheel for meeko: filename=meeko-0.2-py3-none-any.whl size=75837 sha256=88c75d8ed22efc73b451ac641472aa931ccbf3ef36f2f236c14a2d45d58541b2 2021-10-20T22:38:38,741 Stored in directory: /tmp/pip-ephem-wheel-cache-q8s9mkxy/wheels/e4/ab/41/edb851b39e10c2bb5e903010a43bb0c76cb2574588da84a6dc 2021-10-20T22:38:38,761 Successfully built meeko 2021-10-20T22:38:38,779 Removed build tracker: '/tmp/pip-req-tracker-r8betrxe'