2021-11-03T19:48:35,063 Created temporary directory: /tmp/pip-ephem-wheel-cache-3w4n8y32
2021-11-03T19:48:35,069 Created temporary directory: /tmp/pip-req-tracker-_ju0rh4y
2021-11-03T19:48:35,070 Initialized build tracking at /tmp/pip-req-tracker-_ju0rh4y
2021-11-03T19:48:35,070 Created build tracker: /tmp/pip-req-tracker-_ju0rh4y
2021-11-03T19:48:35,071 Entered build tracker: /tmp/pip-req-tracker-_ju0rh4y
2021-11-03T19:48:35,072 Created temporary directory: /tmp/pip-wheel-0m8akdhz
2021-11-03T19:48:35,133 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-03T19:48:35,137 2 location(s) to search for versions of novartis-pisces:
2021-11-03T19:48:35,137 * https://pypi.org/simple/novartis-pisces/
2021-11-03T19:48:35,137 * https://www.piwheels.org/simple/novartis-pisces/
2021-11-03T19:48:35,137 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2021-11-03T19:48:35,140 Getting page https://pypi.org/simple/novartis-pisces/
2021-11-03T19:48:35,144 Found index url https://pypi.org/simple
2021-11-03T19:48:35,468   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2021-11-03T19:48:35,470   Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2
2021-11-03T19:48:35,471   Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3
2021-11-03T19:48:35,472   Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1
2021-11-03T19:48:35,473   Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4
2021-11-03T19:48:35,473   Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2
2021-11-03T19:48:35,474   Found link https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.3
2021-11-03T19:48:35,475   Found link https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.4
2021-11-03T19:48:35,476 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/
2021-11-03T19:48:35,477 Getting page https://www.piwheels.org/simple/novartis-pisces/
2021-11-03T19:48:35,480 Found index url https://www.piwheels.org/simple
2021-11-03T19:48:35,707   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-03T19:48:35,708   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-03T19:48:35,709   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-03T19:48:35,710   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-03T19:48:35,710   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-03T19:48:35,711   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.2-py3-none-any.whl#sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-03T19:48:35,711   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.3-py3-none-any.whl#sha256=0df67ceec82649982fda766535f4204513e9793b6cbf2249d232a8b3356a6612 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-03T19:48:35,745 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2021-11-03T19:48:35,777 Collecting novartis-pisces==0.1.4.4
2021-11-03T19:48:35,781   Created temporary directory: /tmp/pip-unpack-rr0dyx_o
2021-11-03T19:48:36,545   Downloading novartis-pisces-0.1.4.4.tar.gz (18.4 MB)
2021-11-03T19:48:45,544   Added novartis-pisces==0.1.4.4 from https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8 to build tracker '/tmp/pip-req-tracker-_ju0rh4y'
2021-11-03T19:48:45,548     Running setup.py (path:/tmp/pip-wheel-0m8akdhz/novartis-pisces_35bd3641d22c42d7881766ec843a271e/setup.py) egg_info for package novartis-pisces
2021-11-03T19:48:45,550     Created temporary directory: /tmp/pip-pip-egg-info-xrond2c_
2021-11-03T19:48:45,551     Running command python setup.py egg_info
2021-11-03T19:48:51,090     DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-11-03T19:48:54,216     running egg_info
2021-11-03T19:48:54,224     creating /tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info
2021-11-03T19:48:54,226     writing requirements to /tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/requires.txt
2021-11-03T19:48:54,230     writing dependency_links to /tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/dependency_links.txt
2021-11-03T19:48:54,232     writing /tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/PKG-INFO
2021-11-03T19:48:54,237     writing entry points to /tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/entry_points.txt
2021-11-03T19:48:54,240     writing top-level names to /tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/top_level.txt
2021-11-03T19:48:54,244     writing manifest file '/tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/SOURCES.txt'
2021-11-03T19:48:54,641     reading manifest file '/tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/SOURCES.txt'
2021-11-03T19:48:54,646     reading manifest template 'MANIFEST.in'
2021-11-03T19:48:54,668     writing manifest file '/tmp/pip-pip-egg-info-xrond2c_/novartis_pisces.egg-info/SOURCES.txt'
2021-11-03T19:48:54,833   Source in /tmp/pip-wheel-0m8akdhz/novartis-pisces_35bd3641d22c42d7881766ec843a271e has version 0.1.4.4, which satisfies requirement novartis-pisces==0.1.4.4 from https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8
2021-11-03T19:48:54,835   Removed novartis-pisces==0.1.4.4 from https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8 from build tracker '/tmp/pip-req-tracker-_ju0rh4y'
2021-11-03T19:48:54,843 Created temporary directory: /tmp/pip-unpack-1wflbq0n
2021-11-03T19:48:54,844 Building wheels for collected packages: novartis-pisces
2021-11-03T19:48:54,854   Created temporary directory: /tmp/pip-wheel-g0i4v5ri
2021-11-03T19:48:54,855   Building wheel for novartis-pisces (setup.py): started
2021-11-03T19:48:54,856   Destination directory: /tmp/pip-wheel-g0i4v5ri
2021-11-03T19:48:54,856   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0m8akdhz/novartis-pisces_35bd3641d22c42d7881766ec843a271e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0m8akdhz/novartis-pisces_35bd3641d22c42d7881766ec843a271e/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-g0i4v5ri
2021-11-03T19:48:57,975   running bdist_wheel
2021-11-03T19:48:57,982   running build
2021-11-03T19:48:57,983   running build_py
2021-11-03T19:48:58,300   creating build
2021-11-03T19:48:58,301   creating build/lib
2021-11-03T19:48:58,302   creating build/lib/pisces
2021-11-03T19:48:58,305   copying pisces/cli.py -> build/lib/pisces
2021-11-03T19:48:58,310   copying pisces/__init__.py -> build/lib/pisces
2021-11-03T19:48:58,315   copying pisces/index.py -> build/lib/pisces
2021-11-03T19:48:58,322   copying pisces/run.py -> build/lib/pisces
2021-11-03T19:48:58,328   copying pisces/qc.py -> build/lib/pisces
2021-11-03T19:48:58,334   copying pisces/submit.py -> build/lib/pisces
2021-11-03T19:48:58,341   copying pisces/fastq.py -> build/lib/pisces
2021-11-03T19:48:58,347   running egg_info
2021-11-03T19:48:58,360   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2021-11-03T19:48:58,363   writing entry points to novartis_pisces.egg-info/entry_points.txt
2021-11-03T19:48:58,365   writing top-level names to novartis_pisces.egg-info/top_level.txt
2021-11-03T19:48:58,367   writing novartis_pisces.egg-info/PKG-INFO
2021-11-03T19:48:58,371   writing requirements to novartis_pisces.egg-info/requires.txt
2021-11-03T19:48:58,411   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-11-03T19:48:58,444   reading manifest template 'MANIFEST.in'
2021-11-03T19:48:58,468   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-11-03T19:48:58,479   copying pisces/config.json -> build/lib/pisces
2021-11-03T19:48:58,483   creating build/lib/pisces/R
2021-11-03T19:48:58,485   copying pisces/R/.Rprofile -> build/lib/pisces/R
2021-11-03T19:48:58,490   copying pisces/R/.gitignore -> build/lib/pisces/R
2021-11-03T19:48:58,494   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2021-11-03T19:48:58,501   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2021-11-03T19:48:58,506   creating build/lib/pisces/R/renv
2021-11-03T19:48:58,508   copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv
2021-11-03T19:48:58,516   creating build/lib/pisces/data
2021-11-03T19:48:58,518   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2021-11-03T19:48:58,530   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2021-11-03T19:48:58,538   creating build/lib/pisces/scripts
2021-11-03T19:48:58,541   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2021-11-03T19:48:58,550   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2021-11-03T19:48:58,556   creating build/lib/pisces/tests
2021-11-03T19:48:58,558   copying pisces/tests/test_cli.py -> build/lib/pisces/tests
2021-11-03T19:48:58,569   installing to build/bdist.linux-armv7l/wheel
2021-11-03T19:48:58,570   running install
2021-11-03T19:48:58,572   running install_lib
2021-11-03T19:48:58,580   creating build/bdist.linux-armv7l
2021-11-03T19:48:58,581   creating build/bdist.linux-armv7l/wheel
2021-11-03T19:48:58,584   creating build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,588   creating build/bdist.linux-armv7l/wheel/pisces/R
2021-11-03T19:48:58,591   creating build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-11-03T19:48:58,593   copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-11-03T19:48:58,599   copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-03T19:48:58,602   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-03T19:48:58,606   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-03T19:48:58,614   copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-03T19:48:58,620   creating build/bdist.linux-armv7l/wheel/pisces/tests
2021-11-03T19:48:58,623   copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests
2021-11-03T19:48:58,629   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,634   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,638   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,645   creating build/bdist.linux-armv7l/wheel/pisces/data
2021-11-03T19:48:58,646   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-11-03T19:48:58,656   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-11-03T19:48:58,664   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,672   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,678   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,686   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2021-11-03T19:48:58,688   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-11-03T19:48:58,697   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-11-03T19:48:58,704   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,711   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-03T19:48:58,717   running install_egg_info
2021-11-03T19:48:58,729   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.4-py3.5.egg-info
2021-11-03T19:48:58,758   running install_scripts
2021-11-03T19:48:58,848   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.4.4.dist-info/WHEEL
2021-11-03T19:48:59,190   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2021-11-03T19:48:59,195   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.4.4-py3-none-any.whl size=57510 sha256=9a602e2da8188d15ac02b3692617eff25353f07156d354e90e113137fa3b61bd
2021-11-03T19:48:59,196   Stored in directory: /tmp/pip-ephem-wheel-cache-3w4n8y32/wheels/97/bf/c2/759bf0b4fb4881c0991a296d9e505c33d351037e5604d1908f
2021-11-03T19:48:59,214 Successfully built novartis-pisces
2021-11-03T19:48:59,230 Removed build tracker: '/tmp/pip-req-tracker-_ju0rh4y'