2021-11-15T11:05:35,973 Created temporary directory: /tmp/pip-ephem-wheel-cache-sb9uv24n 2021-11-15T11:05:35,980 Created temporary directory: /tmp/pip-req-tracker-6y3jjn8j 2021-11-15T11:05:35,980 Initialized build tracking at /tmp/pip-req-tracker-6y3jjn8j 2021-11-15T11:05:35,981 Created build tracker: /tmp/pip-req-tracker-6y3jjn8j 2021-11-15T11:05:35,981 Entered build tracker: /tmp/pip-req-tracker-6y3jjn8j 2021-11-15T11:05:35,983 Created temporary directory: /tmp/pip-wheel-c9bgx521 2021-11-15T11:05:36,053 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-11-15T11:05:36,057 2 location(s) to search for versions of sequana: 2021-11-15T11:05:36,057 * https://pypi.org/simple/sequana/ 2021-11-15T11:05:36,057 * https://www.piwheels.org/simple/sequana/ 2021-11-15T11:05:36,057 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2021-11-15T11:05:36,060 Getting page https://pypi.org/simple/sequana/ 2021-11-15T11:05:36,064 Found index url 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2021-11-15T11:05:36,927 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.12.1-py3-none-any.whl#sha256=dc1a2ffca1d22d6d247b266c2d906aef250c74d3cd9f832070ca8faf3f9a8bbb (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,928 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.12.2-py3-none-any.whl#sha256=9d05436e2908f0a8ba16483707e751625781ddb3648c00c96c7ca19b5319027f (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,928 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.12.3-py3-none-any.whl#sha256=7e5c09dfa26825ea69a821d65027af2705c3e41d4de05ed6c39e418307c5773b (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,929 Skipping link: No binaries permitted for sequana: 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2021-11-15T11:05:36,937 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.0-py3-none-any.whl#sha256=3080e21d1193e999b07f07f7227c3e70af6a9655e9c706bbfb1d6be64be0e71f (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,937 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.1-py3-none-any.whl#sha256=4b67e3ac6f5e54aa37b0da900d08a73ec9f5517735d2ae91fb038acab735a773 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,938 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.2-py3-none-any.whl#sha256=7972b2552d679935fa79ea6fb51b0465efc24cb36547875633f9ac334aebcb8d (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,939 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.5.0-py3-none-any.whl#sha256=410e59d0dddfb9c8977a537b6aaeb53c664ffe5934aec53b30dda9c317a48b38 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,939 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.5.1-py3-none-any.whl#sha256=868bfc39d3e815d57f418a29825f2e1e710f965468c8c2c42145330fac734eb1 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,940 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.5.2-py3-none-any.whl#sha256=d59cdd129c9f07de2f22deb8d6a87fdbf355ba1884f7d7bdb6c90f6e849f1041 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,941 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.0-py3-none-any.whl#sha256=591516e3de4dc8a8409e657781f9d138df70dba70689d6391cbbbc9c42b0c38e (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,941 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.1-py3-none-any.whl#sha256=d9f7ee133817ee93576077f9a05fc6b0ff338b37c5951b7640811ee905aecec9 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,942 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.2-py3-none-any.whl#sha256=9daac3efca51d0416a4eb439ec2841fe9e0f79ab1771903e47570b683d3af55c (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,943 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.3-py3-none-any.whl#sha256=d2663bf47cd7f401ceacc471e1929e187db6b88f8a9b7c9c51ea1d0483d2bb73 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,943 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.3.post1-py3-none-any.whl#sha256=cd9278fe9ca6af6d3e096fc33b888ebccafb88c29ec2b958d2cfafaaf02ef13d (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,944 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.4-py3-none-any.whl#sha256=beb134933ee6020cec0c9632f7dc90bd320833a1a0be19cc1be8f2c1702dc6d3 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,945 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post1-py3-none-any.whl#sha256=c302b0d7a505ee314cb76562309a1bbc9990befe710507a6ce902b888d1b9f55 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,945 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post2-py3-none-any.whl#sha256=b8efd5c1500578ea35c2ad4b23bc95e43ad9eb6c6a7584ceca08256be9c24b4c (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,946 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post3-py3-none-any.whl#sha256=d52dea7fc456b2cb55600597e477b6d2d63e0c035f5aeb4c1abb7ebde596c3b1 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,947 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.7.0-py3-none-any.whl#sha256=c2169c7a41eee212666306fe6c7222c65cc5aabccda895d7f146d5d7f32c8731 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,947 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.7.1-py3-none-any.whl#sha256=833843fa58f0071d5fb7e389f223dfbaedb59bab50fe03e393c48d8f7e58e753 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,948 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.0-py3-none-any.whl#sha256=44036b7a0763499664f68477020c01b514be40321f58342fb288d51250ee1fbb (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,949 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.1-py3-none-any.whl#sha256=e1358a148898dc8c18d09bc91f3372287dc2b96b893c2b9602175d0831bd5a20 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,949 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.2-py3-none-any.whl#sha256=1dc0e02d6f85958f053ed73e767d0bd9f5671e22ebed95a3b70d9c5c1a5c97c8 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,950 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.3-py3-none-any.whl#sha256=55009f1bf3de983c31c6895316e81e30b6b460bba774165e9552839db7128f00 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,951 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.4-py3-none-any.whl#sha256=cdc6737edc9032885602632826e4913a082f1c66dabd70ebdfeb5695c5318c58 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,951 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.5-py3-none-any.whl#sha256=a6bf97c0284d77636b51fcd78ed7e22e0a195820fb6552be1a2540daaa433d75 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,952 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.6-py3-none-any.whl#sha256=0c91883675a8c454bd0725ae216bc2378d41ec952cef8ad6979ddc3b3b26e820 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,953 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.0-py3-none-any.whl#sha256=dce821b312c886051cfa4bf729f17a5df801fa195ac861642bdf07e6c653f9de (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,953 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.1-py3-none-any.whl#sha256=f2c12f5f57a1dac2672b6c19565b8f75c1815dcb3cb71fe457ef808b59b70f3f (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,954 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.2-py3-none-any.whl#sha256=31f71924b1cabcd3e3e8d8304160de58be7803aeda7d35ec1bf449084f420c3e (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,955 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.3-py3-none-any.whl#sha256=0374fc2b8f2f54ea8e3a5091403798b1bae59166b89fd7cf6eb846f7a3d944b3 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,955 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.4-py3-none-any.whl#sha256=178e6af188bbfa96b5e54a4f0d33b5c5ba607e74cbc67cf85a8aa588e629502c (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,956 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.5-py3-none-any.whl#sha256=a7b054c071f59f03ce6d4e5659c452cb60656f0398728417544674bcf915672f (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,957 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.6-py3-none-any.whl#sha256=a57d1bef0edc28a2c836768c6a4c23146b7702accb38718db86bd7b6fa9d8470 (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,957 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.7-py3-none-any.whl#sha256=ab56e134c46744a1c0b6286cdf17cf65f13ea1c6db1f036c8be5be34f3b754fc (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:36,958 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.8-py3-none-any.whl#sha256=103274642cdeb6dab96a62b7f0df7cd961d70e3e856823bd6d5ef85b37b0477b (from https://www.piwheels.org/simple/sequana/) 2021-11-15T11:05:37,021 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2021-11-15T11:05:37,055 Collecting sequana==0.12.6 2021-11-15T11:05:37,059 Created temporary directory: /tmp/pip-unpack-zg7vhyxr 2021-11-15T11:05:37,708 Downloading sequana-0.12.6.tar.gz (13.6 MB) 2021-11-15T11:05:45,949 Added sequana==0.12.6 from https://files.pythonhosted.org/packages/71/07/f2412b917720942e4e77faa62460996f597e2fabe41e0c04dc32cb75f6d5/sequana-0.12.6.tar.gz#sha256=4e496485894fb290793f1f7e022eec0ea917a8d56d0cacd78af2f42de7664978 to build tracker '/tmp/pip-req-tracker-6y3jjn8j' 2021-11-15T11:05:45,953 Running setup.py (path:/tmp/pip-wheel-c9bgx521/sequana_5541bcc2ff834efd90142966b5aad932/setup.py) egg_info for package sequana 2021-11-15T11:05:45,954 Created temporary directory: /tmp/pip-pip-egg-info-wf2814jt 2021-11-15T11:05:45,955 Running command python setup.py egg_info 2021-11-15T11:05:48,494 running egg_info 2021-11-15T11:05:48,500 creating /tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info 2021-11-15T11:05:48,504 writing requirements to /tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/requires.txt 2021-11-15T11:05:48,507 writing dependency_links to /tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/dependency_links.txt 2021-11-15T11:05:48,509 writing top-level names to /tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/top_level.txt 2021-11-15T11:05:48,515 writing entry points to /tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/entry_points.txt 2021-11-15T11:05:48,517 writing /tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/PKG-INFO 2021-11-15T11:05:48,526 writing manifest file '/tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/SOURCES.txt' 2021-11-15T11:05:49,855 reading manifest file '/tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/SOURCES.txt' 2021-11-15T11:05:49,859 reading manifest template 'MANIFEST.in' 2021-11-15T11:05:49,867 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-11-15T11:05:49,872 warning: no previously-included files matching '*pyc' found under directory '*' 2021-11-15T11:05:50,517 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-11-15T11:05:50,521 warning: no previously-included files matching '*' found under directory 'test' 2021-11-15T11:05:50,525 warning: no previously-included files found matching 'sequana/rm2.py' 2021-11-15T11:05:50,574 writing manifest file '/tmp/pip-pip-egg-info-wf2814jt/sequana.egg-info/SOURCES.txt' 2021-11-15T11:05:50,715 Source in /tmp/pip-wheel-c9bgx521/sequana_5541bcc2ff834efd90142966b5aad932 has version 0.12.6, which satisfies requirement sequana==0.12.6 from https://files.pythonhosted.org/packages/71/07/f2412b917720942e4e77faa62460996f597e2fabe41e0c04dc32cb75f6d5/sequana-0.12.6.tar.gz#sha256=4e496485894fb290793f1f7e022eec0ea917a8d56d0cacd78af2f42de7664978 2021-11-15T11:05:50,716 Removed sequana==0.12.6 from https://files.pythonhosted.org/packages/71/07/f2412b917720942e4e77faa62460996f597e2fabe41e0c04dc32cb75f6d5/sequana-0.12.6.tar.gz#sha256=4e496485894fb290793f1f7e022eec0ea917a8d56d0cacd78af2f42de7664978 from build tracker '/tmp/pip-req-tracker-6y3jjn8j' 2021-11-15T11:05:50,727 Created temporary directory: /tmp/pip-unpack-ct_si9qw 2021-11-15T11:05:50,728 Building wheels for collected packages: sequana 2021-11-15T11:05:50,737 Created temporary directory: /tmp/pip-wheel-lk_6_669 2021-11-15T11:05:50,738 Building wheel for sequana (setup.py): started 2021-11-15T11:05:50,739 Destination directory: /tmp/pip-wheel-lk_6_669 2021-11-15T11:05:50,739 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-c9bgx521/sequana_5541bcc2ff834efd90142966b5aad932/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-c9bgx521/sequana_5541bcc2ff834efd90142966b5aad932/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lk_6_669 2021-11-15T11:05:53,175 running bdist_wheel 2021-11-15T11:05:53,191 running build 2021-11-15T11:05:53,192 running build_py 2021-11-15T11:05:53,536 creating build 2021-11-15T11:05:53,537 creating build/lib 2021-11-15T11:05:53,539 creating build/lib/sequana 2021-11-15T11:05:53,541 copying sequana/lazy.py -> build/lib/sequana 2021-11-15T11:05:53,545 copying sequana/krona.py -> build/lib/sequana 2021-11-15T11:05:53,549 copying sequana/cnv.py -> build/lib/sequana 2021-11-15T11:05:53,553 copying sequana/pacbio.py -> build/lib/sequana 2021-11-15T11:05:53,562 copying sequana/cpg_islands.py -> build/lib/sequana 2021-11-15T11:05:53,567 copying sequana/demultiplex.py -> build/lib/sequana 2021-11-15T11:05:53,573 copying sequana/fasta.py -> build/lib/sequana 2021-11-15T11:05:53,581 copying sequana/find_motif.py -> build/lib/sequana 2021-11-15T11:05:53,586 copying sequana/kmer.py -> build/lib/sequana 2021-11-15T11:05:53,590 copying sequana/cigar.py -> build/lib/sequana 2021-11-15T11:05:53,595 copying sequana/itol.py -> build/lib/sequana 2021-11-15T11:05:53,600 copying sequana/kegg.py -> build/lib/sequana 2021-11-15T11:05:53,605 copying sequana/misc.py -> build/lib/sequana 2021-11-15T11:05:53,611 copying sequana/snpeff.py -> build/lib/sequana 2021-11-15T11:05:53,618 copying sequana/salmon.py -> build/lib/sequana 2021-11-15T11:05:53,624 copying sequana/chipseq.py -> build/lib/sequana 2021-11-15T11:05:53,632 copying sequana/mh.py -> build/lib/sequana 2021-11-15T11:05:53,637 copying sequana/rnadiff.py -> build/lib/sequana 2021-11-15T11:05:53,646 copying sequana/canu_scanner.py -> build/lib/sequana 2021-11-15T11:05:53,653 copying sequana/coverage.py -> build/lib/sequana 2021-11-15T11:05:53,659 copying sequana/criteria.py -> build/lib/sequana 2021-11-15T11:05:53,665 copying sequana/phred.py -> build/lib/sequana 2021-11-15T11:05:53,670 copying sequana/sniffer.py -> build/lib/sequana 2021-11-15T11:05:53,674 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2021-11-15T11:05:53,679 copying sequana/vcf_filter.py -> build/lib/sequana 2021-11-15T11:05:53,686 copying sequana/errors.py -> build/lib/sequana 2021-11-15T11:05:53,691 copying sequana/lazyimports.py -> build/lib/sequana 2021-11-15T11:05:53,697 copying sequana/running_median.py -> build/lib/sequana 2021-11-15T11:05:53,704 copying sequana/jsontool.py -> build/lib/sequana 2021-11-15T11:05:53,708 copying sequana/vcftools.py -> build/lib/sequana 2021-11-15T11:05:53,712 copying sequana/bedtools.py -> build/lib/sequana 2021-11-15T11:05:53,724 copying sequana/fastq.py -> build/lib/sequana 2021-11-15T11:05:53,734 copying sequana/datatools.py -> build/lib/sequana 2021-11-15T11:05:53,739 copying sequana/gff3.py -> build/lib/sequana 2021-11-15T11:05:53,746 copying sequana/featurecounts.py -> build/lib/sequana 2021-11-15T11:05:53,752 copying sequana/isoseq.py -> build/lib/sequana 2021-11-15T11:05:53,759 copying sequana/tools.py -> build/lib/sequana 2021-11-15T11:05:53,765 copying sequana/bed.py -> build/lib/sequana 2021-11-15T11:05:53,771 copying sequana/busco.py -> build/lib/sequana 2021-11-15T11:05:53,777 copying sequana/assembly.py -> build/lib/sequana 2021-11-15T11:05:53,784 copying sequana/vst.py -> build/lib/sequana 2021-11-15T11:05:53,788 copying sequana/genbank.py -> build/lib/sequana 2021-11-15T11:05:53,792 copying sequana/bamtools.py -> build/lib/sequana 2021-11-15T11:05:53,802 copying sequana/mgi.py -> build/lib/sequana 2021-11-15T11:05:53,807 copying sequana/__init__.py -> build/lib/sequana 2021-11-15T11:05:53,813 copying sequana/trf.py -> build/lib/sequana 2021-11-15T11:05:53,819 copying sequana/compare.py -> build/lib/sequana 2021-11-15T11:05:53,826 copying sequana/contigs.py -> build/lib/sequana 2021-11-15T11:05:53,833 copying sequana/taxonomy.py -> build/lib/sequana 2021-11-15T11:05:53,840 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2021-11-15T11:05:53,847 copying sequana/fastqc.py -> build/lib/sequana 2021-11-15T11:05:53,854 copying sequana/stats.py -> build/lib/sequana 2021-11-15T11:05:53,859 copying sequana/protein.py -> build/lib/sequana 2021-11-15T11:05:53,864 copying sequana/summary.py -> build/lib/sequana 2021-11-15T11:05:53,870 copying sequana/mixture.py -> build/lib/sequana 2021-11-15T11:05:53,877 copying sequana/iuapc.py -> build/lib/sequana 2021-11-15T11:05:53,882 copying sequana/iem.py -> build/lib/sequana 2021-11-15T11:05:53,889 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2021-11-15T11:05:53,896 copying sequana/databases.py -> build/lib/sequana 2021-11-15T11:05:53,903 copying sequana/gtf.py -> build/lib/sequana 2021-11-15T11:05:53,909 copying sequana/sequence.py -> build/lib/sequana 2021-11-15T11:05:53,923 creating build/lib/sequana/viz 2021-11-15T11:05:53,926 copying sequana/viz/venn.py -> build/lib/sequana/viz 2021-11-15T11:05:53,931 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2021-11-15T11:05:53,936 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2021-11-15T11:05:53,941 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2021-11-15T11:05:53,945 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2021-11-15T11:05:53,949 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2021-11-15T11:05:53,958 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2021-11-15T11:05:53,963 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2021-11-15T11:05:53,970 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2021-11-15T11:05:53,976 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2021-11-15T11:05:53,982 copying sequana/viz/mds.py -> build/lib/sequana/viz 2021-11-15T11:05:53,987 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2021-11-15T11:05:53,993 copying sequana/viz/pca.py -> build/lib/sequana/viz 2021-11-15T11:05:53,999 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2021-11-15T11:05:54,007 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2021-11-15T11:05:54,014 copying sequana/viz/anova.py -> build/lib/sequana/viz 2021-11-15T11:05:54,019 copying sequana/viz/core.py -> build/lib/sequana/viz 2021-11-15T11:05:54,025 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2021-11-15T11:05:54,032 creating build/lib/sequana/rules 2021-11-15T11:05:54,034 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2021-11-15T11:05:54,039 creating build/lib/sequana/enrichment 2021-11-15T11:05:54,041 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2021-11-15T11:05:54,048 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2021-11-15T11:05:54,056 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2021-11-15T11:05:54,061 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2021-11-15T11:05:54,066 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2021-11-15T11:05:54,073 creating build/lib/sequana/multiqc 2021-11-15T11:05:54,075 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,080 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,085 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,090 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,096 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,102 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,109 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,113 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,117 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,122 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,126 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,130 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2021-11-15T11:05:54,137 creating build/lib/sequana/plots 2021-11-15T11:05:54,140 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2021-11-15T11:05:54,146 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2021-11-15T11:05:54,152 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2021-11-15T11:05:54,156 creating build/lib/sequana/resources 2021-11-15T11:05:54,158 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2021-11-15T11:05:54,163 creating build/lib/sequana/utils 2021-11-15T11:05:54,165 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2021-11-15T11:05:54,171 copying sequana/utils/tree.py -> build/lib/sequana/utils 2021-11-15T11:05:54,177 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2021-11-15T11:05:54,183 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2021-11-15T11:05:54,188 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2021-11-15T11:05:54,192 copying sequana/utils/config.py -> build/lib/sequana/utils 2021-11-15T11:05:54,197 creating build/lib/sequana/kraken 2021-11-15T11:05:54,199 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2021-11-15T11:05:54,208 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2021-11-15T11:05:54,211 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2021-11-15T11:05:54,223 creating build/lib/sequana/modules_report 2021-11-15T11:05:54,225 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,231 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,236 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,239 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,245 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,252 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,258 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,263 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,270 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,274 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,279 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,283 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,287 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,293 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,300 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,305 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,312 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,317 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,322 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,328 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2021-11-15T11:05:54,336 creating build/lib/sequana/scripts 2021-11-15T11:05:54,338 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,344 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,348 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,354 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,358 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,362 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,366 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,371 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,376 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,385 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,390 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2021-11-15T11:05:54,396 creating build/lib/sequana/rules/Variant_caller 2021-11-15T11:05:54,398 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2021-11-15T11:05:54,403 creating build/lib/sequana/rules/SnpEff 2021-11-15T11:05:54,404 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2021-11-15T11:05:54,409 creating build/lib/sequana/rules/Utils 2021-11-15T11:05:54,411 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2021-11-15T11:05:54,416 creating build/lib/sequana/rules/sambamba 2021-11-15T11:05:54,417 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2021-11-15T11:05:54,422 creating build/lib/sequana/rules/deeptools 2021-11-15T11:05:54,424 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2021-11-15T11:05:54,429 creating build/lib/sequana/rules/codecs 2021-11-15T11:05:54,430 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2021-11-15T11:05:54,435 creating build/lib/sequana/rules/Pacbio 2021-11-15T11:05:54,437 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2021-11-15T11:05:54,442 creating build/lib/sequana/rules/idr 2021-11-15T11:05:54,443 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2021-11-15T11:05:54,448 creating build/lib/sequana/rules/picard-tools 2021-11-15T11:05:54,450 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2021-11-15T11:05:54,454 creating build/lib/sequana/resources/snpeff 2021-11-15T11:05:54,456 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2021-11-15T11:05:54,460 creating build/lib/sequana/resources/examples 2021-11-15T11:05:54,462 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2021-11-15T11:05:54,466 creating build/lib/sequana/resources/templates 2021-11-15T11:05:54,468 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2021-11-15T11:05:54,473 creating build/lib/sequana/resources/css 2021-11-15T11:05:54,474 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2021-11-15T11:05:54,479 creating build/lib/sequana/resources/js 2021-11-15T11:05:54,481 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2021-11-15T11:05:54,485 creating build/lib/sequana/resources/busco 2021-11-15T11:05:54,487 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2021-11-15T11:05:54,491 creating build/lib/sequana/resources/doc 2021-11-15T11:05:54,493 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2021-11-15T11:05:54,498 creating build/lib/sequana/resources/testing 2021-11-15T11:05:54,500 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2021-11-15T11:05:54,504 creating build/lib/sequana/resources/images 2021-11-15T11:05:54,506 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2021-11-15T11:05:54,510 creating build/lib/sequana/resources/data 2021-11-15T11:05:54,512 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2021-11-15T11:05:54,517 creating build/lib/sequana/resources/canvas 2021-11-15T11:05:54,519 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2021-11-15T11:05:54,522 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2021-11-15T11:05:54,527 creating build/lib/sequana/resources/doc/rnadiff_compare 2021-11-15T11:05:54,529 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2021-11-15T11:05:54,533 creating build/lib/sequana/resources/testing/featurecounts 2021-11-15T11:05:54,535 copying sequana/resources/testing/featurecounts/__init__.py -> build/lib/sequana/resources/testing/featurecounts 2021-11-15T11:05:54,540 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2021-11-15T11:05:54,542 copying sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2021-11-15T11:05:54,546 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-11-15T11:05:54,548 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-11-15T11:05:54,553 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-11-15T11:05:54,554 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-11-15T11:05:54,559 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-11-15T11:05:54,561 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-11-15T11:05:54,565 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-11-15T11:05:54,567 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-11-15T11:05:55,381 copying sequana/rules/README.rst -> build/lib/sequana/rules 2021-11-15T11:05:55,385 creating build/lib/sequana/rules/bed_to_gff 2021-11-15T11:05:55,387 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2021-11-15T11:05:55,392 creating build/lib/sequana/rules/fastqc 2021-11-15T11:05:55,394 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2021-11-15T11:05:55,399 creating build/lib/sequana/rules/dag 2021-11-15T11:05:55,401 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2021-11-15T11:05:55,406 creating build/lib/sequana/rules/spades 2021-11-15T11:05:55,408 copying sequana/rules/spades/spades.rules -> build/lib/sequana/rules/spades 2021-11-15T11:05:55,413 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2021-11-15T11:05:55,415 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2021-11-15T11:05:55,422 creating build/lib/sequana/rules/canu 2021-11-15T11:05:55,425 copying sequana/rules/canu/canu.rules -> build/lib/sequana/rules/canu 2021-11-15T11:05:55,432 creating build/lib/sequana/rules/remove_blacklist 2021-11-15T11:05:55,435 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2021-11-15T11:05:55,440 creating build/lib/sequana/rules/revcomp_rule 2021-11-15T11:05:55,442 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2021-11-15T11:05:55,447 creating build/lib/sequana/rules/falco 2021-11-15T11:05:55,449 copying sequana/rules/falco/falco.rules -> build/lib/sequana/rules/falco 2021-11-15T11:05:55,454 creating build/lib/sequana/rules/freebayes 2021-11-15T11:05:55,456 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2021-11-15T11:05:55,463 creating build/lib/sequana/rules/miRNA_count_dynamic 2021-11-15T11:05:55,465 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2021-11-15T11:05:55,472 creating build/lib/sequana/rules/samtools_sort 2021-11-15T11:05:55,475 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2021-11-15T11:05:55,480 creating build/lib/sequana/rules/multiqc 2021-11-15T11:05:55,482 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2021-11-15T11:05:55,487 creating build/lib/sequana/rules/digital_normalisation 2021-11-15T11:05:55,489 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2021-11-15T11:05:55,494 creating build/lib/sequana/rules/conda 2021-11-15T11:05:55,497 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2021-11-15T11:05:55,504 creating build/lib/sequana/rules/prokka 2021-11-15T11:05:55,506 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2021-11-15T11:05:55,513 creating build/lib/sequana/rules/bwa_index 2021-11-15T11:05:55,516 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2021-11-15T11:05:55,521 creating build/lib/sequana/rules/salmon_mapping 2021-11-15T11:05:55,523 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2021-11-15T11:05:55,528 creating build/lib/sequana/rules/star_mapping 2021-11-15T11:05:55,530 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2021-11-15T11:05:55,535 creating build/lib/sequana/rules/preSARTools 2021-11-15T11:05:55,537 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2021-11-15T11:05:55,544 creating build/lib/sequana/rules/rulegraph 2021-11-15T11:05:55,547 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2021-11-15T11:05:55,554 creating build/lib/sequana/rules/busco_analysis 2021-11-15T11:05:55,557 copying sequana/rules/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/busco_analysis 2021-11-15T11:05:55,562 creating build/lib/sequana/rules/pacbio_quality 2021-11-15T11:05:55,564 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2021-11-15T11:05:55,569 creating build/lib/sequana/rules/samtools_depth 2021-11-15T11:05:55,571 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2021-11-15T11:05:55,576 creating build/lib/sequana/rules/bam_analysis 2021-11-15T11:05:55,578 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2021-11-15T11:05:55,585 creating build/lib/sequana/rules/igvtools 2021-11-15T11:05:55,588 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2021-11-15T11:05:55,595 creating build/lib/sequana/rules/DupRadar 2021-11-15T11:05:55,597 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2021-11-15T11:05:55,602 creating build/lib/sequana/rules/SARTools 2021-11-15T11:05:55,604 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2021-11-15T11:05:55,610 creating build/lib/sequana/rules/bwa_bam_to_fastq 2021-11-15T11:05:55,612 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2021-11-15T11:05:55,617 creating build/lib/sequana/rules/sequana_coverage 2021-11-15T11:05:55,619 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2021-11-15T11:05:55,627 creating build/lib/sequana/rules/freebayes_bcf_filter 2021-11-15T11:05:55,630 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2021-11-15T11:05:55,637 creating build/lib/sequana/rules/extract_fasta_from_bed 2021-11-15T11:05:55,639 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2021-11-15T11:05:55,644 creating build/lib/sequana/rules/fastq_screen_report 2021-11-15T11:05:55,646 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2021-11-15T11:05:55,652 creating build/lib/sequana/rules/busco 2021-11-15T11:05:55,654 copying sequana/rules/busco/busco.rules -> build/lib/sequana/rules/busco 2021-11-15T11:05:55,659 creating build/lib/sequana/rules/star_index 2021-11-15T11:05:55,662 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2021-11-15T11:05:55,669 creating build/lib/sequana/rules/fastq_sampling 2021-11-15T11:05:55,671 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2021-11-15T11:05:55,678 creating build/lib/sequana/rules/bowtie2_index 2021-11-15T11:05:55,680 copying sequana/rules/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/bowtie2_index 2021-11-15T11:05:55,685 creating build/lib/sequana/rules/spades_get_fastq 2021-11-15T11:05:55,687 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2021-11-15T11:05:55,692 creating build/lib/sequana/rules/fastq_screen 2021-11-15T11:05:55,693 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2021-11-15T11:05:55,698 creating build/lib/sequana/rules/rnaseqc 2021-11-15T11:05:55,700 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2021-11-15T11:05:55,706 creating build/lib/sequana/rules/mapping_analysis 2021-11-15T11:05:55,707 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2021-11-15T11:05:55,712 creating build/lib/sequana/rules/quast 2021-11-15T11:05:55,714 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2021-11-15T11:05:55,719 creating build/lib/sequana/rules/bamCoverage 2021-11-15T11:05:55,721 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2021-11-15T11:05:55,728 creating build/lib/sequana/rules/spp 2021-11-15T11:05:55,730 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2021-11-15T11:05:55,737 creating build/lib/sequana/rules/summary_pipeline 2021-11-15T11:05:55,740 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2021-11-15T11:05:55,747 creating build/lib/sequana/rules/fastp 2021-11-15T11:05:55,749 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2021-11-15T11:05:55,756 creating build/lib/sequana/rules/feature_counts 2021-11-15T11:05:55,759 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2021-11-15T11:05:55,765 creating build/lib/sequana/rules/indel_realigner 2021-11-15T11:05:55,768 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2021-11-15T11:05:55,775 creating build/lib/sequana/rules/bam_quality_filter 2021-11-15T11:05:55,777 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2021-11-15T11:05:55,784 creating build/lib/sequana/rules/salmon_index 2021-11-15T11:05:55,786 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2021-11-15T11:05:55,792 creating build/lib/sequana/rules/multiqc2 2021-11-15T11:05:55,795 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2021-11-15T11:05:55,802 creating build/lib/sequana/rules/spikes_counting 2021-11-15T11:05:55,804 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2021-11-15T11:05:55,811 creating build/lib/sequana/rules/format_contigs 2021-11-15T11:05:55,813 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2021-11-15T11:05:55,820 creating build/lib/sequana/rules/freebayes_vcf_filter 2021-11-15T11:05:55,822 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2021-11-15T11:05:55,827 creating build/lib/sequana/rules/cutadapt 2021-11-15T11:05:55,829 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2021-11-15T11:05:55,835 creating build/lib/sequana/rules/macs3_dynamic 2021-11-15T11:05:55,837 copying sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/lib/sequana/rules/macs3_dynamic 2021-11-15T11:05:55,842 creating build/lib/sequana/rules/joint_freebayes 2021-11-15T11:05:55,844 copying sequana/rules/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/joint_freebayes 2021-11-15T11:05:55,851 creating build/lib/sequana/rules/copy_multiple_files 2021-11-15T11:05:55,853 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2021-11-15T11:05:55,860 creating build/lib/sequana/rules/tophat_mapping 2021-11-15T11:05:55,862 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2021-11-15T11:05:55,867 creating build/lib/sequana/rules/multiqc/2.0 2021-11-15T11:05:55,869 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2021-11-15T11:05:55,874 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-11-15T11:05:55,876 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-11-15T11:05:55,881 creating build/lib/sequana/rules/peak_calling 2021-11-15T11:05:55,883 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-11-15T11:05:55,886 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-11-15T11:05:55,893 creating build/lib/sequana/rules/sambamba/sambamba_filter 2021-11-15T11:05:55,895 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2021-11-15T11:05:55,902 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2021-11-15T11:05:55,905 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2021-11-15T11:05:55,912 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-11-15T11:05:55,914 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-11-15T11:05:55,921 creating build/lib/sequana/rules/deeptools/plotCoverage 2021-11-15T11:05:55,923 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2021-11-15T11:05:55,929 creating build/lib/sequana/rules/deeptools/multiBamSummary 2021-11-15T11:05:55,930 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2021-11-15T11:05:55,935 creating build/lib/sequana/rules/deeptools/plotCorrelation 2021-11-15T11:05:55,937 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2021-11-15T11:05:55,942 creating build/lib/sequana/rules/kraken 2021-11-15T11:05:55,944 creating build/lib/sequana/rules/kraken/2.0 2021-11-15T11:05:55,947 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2021-11-15T11:05:55,954 creating build/lib/sequana/rules/kraken/1.1 2021-11-15T11:05:55,957 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2021-11-15T11:05:55,964 creating build/lib/sequana/rules/kraken/1.0 2021-11-15T11:05:55,967 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2021-11-15T11:05:55,974 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-11-15T11:05:55,977 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-11-15T11:05:55,983 creating build/lib/sequana/rules/codecs/bz2_to_gz 2021-11-15T11:05:55,985 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2021-11-15T11:05:55,990 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2021-11-15T11:05:55,992 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2021-11-15T11:05:55,997 creating build/lib/sequana/rules/codecs/fastq_to_gz 2021-11-15T11:05:55,999 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2021-11-15T11:05:56,005 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2021-11-15T11:05:56,007 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2021-11-15T11:05:56,014 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2021-11-15T11:05:56,017 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2021-11-15T11:05:56,024 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-11-15T11:05:56,026 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-11-15T11:05:56,031 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-11-15T11:05:56,033 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-11-15T11:05:56,038 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-11-15T11:05:56,040 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-11-15T11:05:56,045 creating build/lib/sequana/rules/codecs/gz_to_bz2 2021-11-15T11:05:56,048 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2021-11-15T11:05:56,055 creating build/lib/sequana/rules/codecs/bam_to_fasta 2021-11-15T11:05:56,057 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2021-11-15T11:05:56,064 creating build/lib/sequana/rules/codecs/gz_to_fastq 2021-11-15T11:05:56,066 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2021-11-15T11:05:56,071 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2021-11-15T11:05:56,073 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2021-11-15T11:05:56,079 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2021-11-15T11:05:56,081 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2021-11-15T11:05:56,086 creating build/lib/sequana/rules/idr/compute_idr 2021-11-15T11:05:56,089 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2021-11-15T11:05:56,096 creating build/lib/sequana/rules/idr/stats_peakCalling 2021-11-15T11:05:56,099 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2021-11-15T11:05:56,106 creating build/lib/sequana/rules/idr/select_peaks 2021-11-15T11:05:56,108 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2021-11-15T11:05:56,113 creating build/lib/sequana/rules/idr/intersectionApproach 2021-11-15T11:05:56,114 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2021-11-15T11:05:56,120 creating build/lib/sequana/rules/idr/metrics_peaks 2021-11-15T11:05:56,121 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2021-11-15T11:05:56,128 creating build/lib/sequana/rules/idr/preIDR_dynamic 2021-11-15T11:05:56,130 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2021-11-15T11:05:56,138 creating build/lib/sequana/rules/idr/union_peaks 2021-11-15T11:05:56,141 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2021-11-15T11:05:56,147 creating build/lib/sequana/rules/picard-tools/add_read_group 2021-11-15T11:05:56,149 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2021-11-15T11:05:56,154 creating build/lib/sequana/rules/picard-tools/reorderSam 2021-11-15T11:05:56,156 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2021-11-15T11:05:56,161 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2021-11-15T11:05:56,163 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2021-11-15T11:05:56,169 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-11-15T11:05:56,172 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-11-15T11:05:56,179 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-11-15T11:05:56,181 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-11-15T11:05:56,188 creating build/lib/sequana/rules/SnpEff/snpeff 2021-11-15T11:05:56,189 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-11-15T11:05:56,192 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-11-15T11:05:56,197 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-11-15T11:05:56,199 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-11-15T11:05:56,205 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-11-15T11:05:56,206 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-11-15T11:05:56,209 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-11-15T11:05:56,216 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-11-15T11:05:56,219 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-11-15T11:05:56,227 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2021-11-15T11:05:56,233 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2021-11-15T11:05:56,241 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2021-11-15T11:05:56,246 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2021-11-15T11:05:56,256 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2021-11-15T11:05:56,265 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2021-11-15T11:05:56,272 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2021-11-15T11:05:56,277 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2021-11-15T11:05:56,282 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2021-11-15T11:05:56,288 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2021-11-15T11:05:56,307 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2021-11-15T11:05:56,313 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2021-11-15T11:05:56,319 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2021-11-15T11:05:56,326 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2021-11-15T11:05:56,333 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,340 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,355 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,368 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,378 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,394 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,423 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,453 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,460 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,475 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,481 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,488 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,493 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2021-11-15T11:05:56,506 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2021-11-15T11:05:56,512 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,517 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,522 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,531 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,536 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,543 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,551 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,561 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,569 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,591 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,597 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,605 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,620 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,627 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,634 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,640 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,648 copying sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,654 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,661 copying sequana/resources/testing/test.bam.bai -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,665 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,671 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,679 copying sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,686 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,692 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,698 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,703 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,708 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,713 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,717 copying sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,724 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,730 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,746 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,752 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,763 copying sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,770 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,777 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,809 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,816 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,823 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,846 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,851 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,856 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,866 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,909 copying sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,915 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,924 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,932 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,938 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,946 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2021-11-15T11:05:56,964 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,003 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,018 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,025 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,031 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,038 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,081 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,121 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,126 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,133 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,140 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,146 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,152 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,162 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,168 copying sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,174 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,181 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,191 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,198 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,204 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,209 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,215 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,222 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,228 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,233 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,239 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,306 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,313 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,319 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,334 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2021-11-15T11:05:57,356 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-11-15T11:05:57,362 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-11-15T11:05:57,368 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-11-15T11:05:57,374 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2021-11-15T11:05:57,375 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-11-15T11:05:57,377 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-11-15T11:05:57,383 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-11-15T11:05:57,387 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-11-15T11:05:57,389 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-11-15T11:05:57,396 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-11-15T11:05:57,401 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-11-15T11:05:57,404 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-11-15T11:05:57,411 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-11-15T11:05:57,416 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2021-11-15T11:05:57,421 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2021-11-15T11:05:57,427 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2021-11-15T11:05:57,439 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2021-11-15T11:05:57,446 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2021-11-15T11:05:57,453 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2021-11-15T11:05:57,460 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2021-11-15T11:05:57,474 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2021-11-15T11:05:57,481 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2021-11-15T11:05:57,510 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2021-11-15T11:05:57,517 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2021-11-15T11:05:57,572 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2021-11-15T11:05:57,608 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-11-15T11:05:57,627 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2021-11-15T11:05:57,646 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2021-11-15T11:05:57,734 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2021-11-15T11:05:57,743 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2021-11-15T11:05:57,752 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-11-15T11:05:58,201 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2021-11-15T11:05:58,214 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-11-15T11:05:58,232 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2021-11-15T11:05:58,273 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2021-11-15T11:05:58,280 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2021-11-15T11:05:58,290 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2021-11-15T11:05:58,331 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2021-11-15T11:05:58,384 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-11-15T11:05:58,842 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-11-15T11:05:58,860 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2021-11-15T11:05:58,869 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2021-11-15T11:05:58,945 installing to build/bdist.linux-armv7l/wheel 2021-11-15T11:05:58,946 running install 2021-11-15T11:05:58,948 running install_lib 2021-11-15T11:05:58,956 creating build/bdist.linux-armv7l 2021-11-15T11:05:58,957 creating build/bdist.linux-armv7l/wheel 2021-11-15T11:05:58,963 creating build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:58,965 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:58,969 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:58,973 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:58,979 creating build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:58,981 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:58,987 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:58,994 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:58,999 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,004 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,008 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,014 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,018 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,024 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,030 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,035 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,041 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,045 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,050 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,056 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,061 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,066 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,072 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-11-15T11:05:59,079 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,088 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,092 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,098 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,104 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,112 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,118 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,125 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:05:59,135 creating build/bdist.linux-armv7l/wheel/sequana/rules 2021-11-15T11:05:59,138 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-11-15T11:05:59,141 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-11-15T11:05:59,149 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2021-11-15T11:05:59,153 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2021-11-15T11:05:59,161 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-11-15T11:05:59,165 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-11-15T11:05:59,171 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades 2021-11-15T11:05:59,174 copying build/lib/sequana/rules/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades 2021-11-15T11:05:59,181 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2021-11-15T11:05:59,183 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2021-11-15T11:05:59,192 creating build/bdist.linux-armv7l/wheel/sequana/rules/canu 2021-11-15T11:05:59,196 copying build/lib/sequana/rules/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/canu 2021-11-15T11:05:59,205 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-11-15T11:05:59,208 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-11-15T11:05:59,214 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-11-15T11:05:59,217 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-11-15T11:05:59,223 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco 2021-11-15T11:05:59,245 copying build/lib/sequana/rules/falco/falco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco 2021-11-15T11:05:59,254 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2021-11-15T11:05:59,256 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2021-11-15T11:05:59,264 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-11-15T11:05:59,266 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-11-15T11:05:59,272 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-11-15T11:05:59,274 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-11-15T11:05:59,280 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-11-15T11:05:59,282 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-11-15T11:05:59,285 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-11-15T11:05:59,291 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-11-15T11:05:59,298 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-11-15T11:05:59,300 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-11-15T11:05:59,308 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-11-15T11:05:59,309 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-11-15T11:05:59,315 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-11-15T11:05:59,317 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-11-15T11:05:59,323 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-11-15T11:05:59,325 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-11-15T11:05:59,331 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-11-15T11:05:59,334 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-11-15T11:05:59,344 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-11-15T11:05:59,346 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-11-15T11:05:59,355 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-11-15T11:05:59,358 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-11-15T11:05:59,365 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-11-15T11:05:59,368 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-11-15T11:05:59,375 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-11-15T11:05:59,382 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2021-11-15T11:05:59,386 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-11-15T11:05:59,389 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-11-15T11:05:59,397 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-11-15T11:05:59,399 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-11-15T11:05:59,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-11-15T11:05:59,411 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-11-15T11:05:59,414 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-11-15T11:05:59,422 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-11-15T11:05:59,424 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-11-15T11:05:59,430 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-11-15T11:05:59,436 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-11-15T11:05:59,439 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-11-15T11:05:59,446 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-11-15T11:05:59,449 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-11-15T11:05:59,457 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2021-11-15T11:05:59,461 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-11-15T11:05:59,464 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-11-15T11:05:59,472 creating build/bdist.linux-armv7l/wheel/sequana/rules/busco_analysis 2021-11-15T11:05:59,474 copying build/lib/sequana/rules/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/busco_analysis 2021-11-15T11:05:59,481 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-11-15T11:05:59,484 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-11-15T11:05:59,491 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-11-15T11:05:59,494 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-11-15T11:05:59,501 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-11-15T11:05:59,504 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-11-15T11:05:59,511 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-11-15T11:05:59,513 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-11-15T11:05:59,519 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-11-15T11:05:59,520 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-11-15T11:05:59,525 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-11-15T11:05:59,527 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-11-15T11:05:59,533 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-11-15T11:05:59,536 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-11-15T11:05:59,545 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-11-15T11:05:59,548 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-11-15T11:05:59,551 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-11-15T11:05:59,559 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-11-15T11:05:59,561 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-11-15T11:05:59,567 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-11-15T11:05:59,574 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-11-15T11:05:59,576 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-11-15T11:05:59,583 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-11-15T11:05:59,586 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-11-15T11:05:59,594 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2021-11-15T11:05:59,597 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2021-11-15T11:05:59,604 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-11-15T11:05:59,608 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-11-15T11:05:59,611 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-11-15T11:05:59,617 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-11-15T11:05:59,619 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-11-15T11:05:59,624 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-11-15T11:05:59,626 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-11-15T11:05:59,632 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-11-15T11:05:59,634 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-11-15T11:05:59,640 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-11-15T11:05:59,646 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-11-15T11:05:59,648 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-11-15T11:05:59,656 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2021-11-15T11:05:59,660 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2021-11-15T11:05:59,663 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2021-11-15T11:05:59,671 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-11-15T11:05:59,673 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-11-15T11:05:59,679 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-11-15T11:05:59,681 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-11-15T11:05:59,687 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-11-15T11:05:59,689 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-11-15T11:05:59,696 creating build/bdist.linux-armv7l/wheel/sequana/rules/busco 2021-11-15T11:05:59,698 copying build/lib/sequana/rules/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/busco 2021-11-15T11:05:59,706 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-11-15T11:05:59,710 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-11-15T11:05:59,713 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-11-15T11:05:59,719 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-11-15T11:05:59,721 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-11-15T11:05:59,726 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-11-15T11:05:59,728 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-11-15T11:05:59,734 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-11-15T11:05:59,736 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-11-15T11:05:59,743 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2021-11-15T11:05:59,745 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2021-11-15T11:05:59,753 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-11-15T11:05:59,755 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-11-15T11:05:59,762 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-11-15T11:05:59,765 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-11-15T11:05:59,772 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-11-15T11:05:59,775 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-11-15T11:05:59,782 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-11-15T11:05:59,785 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-11-15T11:05:59,792 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-11-15T11:05:59,794 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-11-15T11:05:59,800 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-11-15T11:05:59,806 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-11-15T11:05:59,809 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-11-15T11:05:59,816 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-11-15T11:05:59,819 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-11-15T11:05:59,826 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-11-15T11:05:59,828 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-11-15T11:05:59,836 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-11-15T11:05:59,838 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-11-15T11:05:59,846 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-11-15T11:05:59,848 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-11-15T11:05:59,855 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-11-15T11:05:59,858 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-11-15T11:05:59,865 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2021-11-15T11:05:59,867 copying build/lib/sequana/rules/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2021-11-15T11:05:59,873 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-11-15T11:05:59,879 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2021-11-15T11:05:59,881 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2021-11-15T11:05:59,888 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-11-15T11:05:59,891 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-11-15T11:05:59,898 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-11-15T11:05:59,901 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-11-15T11:05:59,908 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-11-15T11:05:59,911 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-11-15T11:05:59,915 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-11-15T11:05:59,921 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-11-15T11:05:59,923 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-11-15T11:05:59,928 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-11-15T11:05:59,931 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-11-15T11:05:59,933 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-11-15T11:05:59,939 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-11-15T11:05:59,941 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-11-15T11:05:59,949 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-11-15T11:05:59,951 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-11-15T11:05:59,959 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-11-15T11:05:59,961 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-11-15T11:05:59,966 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-11-15T11:05:59,968 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-11-15T11:05:59,973 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-11-15T11:05:59,975 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-11-15T11:05:59,981 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-11-15T11:05:59,987 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-11-15T11:05:59,989 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-11-15T11:05:59,996 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-11-15T11:05:59,999 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-11-15T11:06:00,005 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2021-11-15T11:06:00,007 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2021-11-15T11:06:00,012 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-11-15T11:06:00,014 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-11-15T11:06:00,019 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-11-15T11:06:00,022 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-11-15T11:06:00,029 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-11-15T11:06:00,033 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-11-15T11:06:00,036 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-11-15T11:06:00,043 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-11-15T11:06:00,046 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-11-15T11:06:00,053 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2021-11-15T11:06:00,055 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2021-11-15T11:06:00,061 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-11-15T11:06:00,065 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-11-15T11:06:00,067 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-11-15T11:06:00,073 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-11-15T11:06:00,074 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-11-15T11:06:00,080 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-11-15T11:06:00,082 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-11-15T11:06:00,089 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-11-15T11:06:00,092 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-11-15T11:06:00,099 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-11-15T11:06:00,101 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-11-15T11:06:00,108 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-11-15T11:06:00,111 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-11-15T11:06:00,118 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-11-15T11:06:00,120 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-11-15T11:06:00,126 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-11-15T11:06:00,128 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-11-15T11:06:00,133 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-11-15T11:06:00,135 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-11-15T11:06:00,140 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-11-15T11:06:00,142 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-11-15T11:06:00,149 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2021-11-15T11:06:00,151 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2021-11-15T11:06:00,159 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2021-11-15T11:06:00,161 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2021-11-15T11:06:00,168 creating build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-11-15T11:06:00,169 copying build/lib/sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-11-15T11:06:00,175 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes 2021-11-15T11:06:00,177 copying build/lib/sequana/rules/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes 2021-11-15T11:06:00,182 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-11-15T11:06:00,185 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-11-15T11:06:00,192 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-11-15T11:06:00,194 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-11-15T11:06:00,202 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-11-15T11:06:00,204 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-11-15T11:06:00,214 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-11-15T11:06:00,222 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-11-15T11:06:00,227 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-11-15T11:06:00,232 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2021-11-15T11:06:00,239 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,242 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,248 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,252 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,258 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,262 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,268 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,274 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,281 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,286 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,290 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,294 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,298 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,303 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-11-15T11:06:00,308 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,314 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,319 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,325 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,330 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,338 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,343 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,352 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,359 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,365 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,371 creating build/bdist.linux-armv7l/wheel/sequana/plots 2021-11-15T11:06:00,373 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-11-15T11:06:00,378 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-11-15T11:06:00,383 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-11-15T11:06:00,387 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,393 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,398 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,405 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,412 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,417 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,424 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:00,432 creating build/bdist.linux-armv7l/wheel/sequana/resources 2021-11-15T11:06:00,436 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-11-15T11:06:00,439 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-11-15T11:06:00,453 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-11-15T11:06:00,459 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-11-15T11:06:00,461 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-11-15T11:06:00,469 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-11-15T11:06:00,473 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-11-15T11:06:00,477 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2021-11-15T11:06:00,483 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-11-15T11:06:00,485 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-11-15T11:06:00,490 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-11-15T11:06:00,494 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-11-15T11:06:00,498 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-11-15T11:06:00,501 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-11-15T11:06:00,506 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-11-15T11:06:00,508 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-11-15T11:06:00,526 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-11-15T11:06:00,531 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-11-15T11:06:00,536 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-11-15T11:06:00,539 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-11-15T11:06:00,545 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-11-15T11:06:00,552 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,555 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,561 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,574 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,586 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,593 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,605 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,633 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,661 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,665 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,679 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,683 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,691 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,696 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,700 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-11-15T11:06:00,709 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-11-15T11:06:00,711 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-11-15T11:06:00,716 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-11-15T11:06:00,722 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2021-11-15T11:06:00,727 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2021-11-15T11:06:00,732 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2021-11-15T11:06:00,734 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2021-11-15T11:06:00,737 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2021-11-15T11:06:00,745 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,747 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,751 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,756 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,763 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,772 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,778 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,799 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,805 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,813 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,828 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,836 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,841 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,845 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,851 copying build/lib/sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,857 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,865 copying build/lib/sequana/resources/testing/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,870 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,877 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,886 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,892 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2021-11-15T11:06:00,895 copying build/lib/sequana/resources/testing/featurecounts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2021-11-15T11:06:00,901 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2021-11-15T11:06:00,905 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-11-15T11:06:00,909 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-11-15T11:06:00,912 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-11-15T11:06:00,917 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-11-15T11:06:00,922 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-11-15T11:06:00,924 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-11-15T11:06:00,928 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-11-15T11:06:00,931 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-11-15T11:06:00,936 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-11-15T11:06:00,938 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-11-15T11:06:00,944 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-11-15T11:06:00,950 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2021-11-15T11:06:00,954 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-11-15T11:06:00,957 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-11-15T11:06:00,962 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-11-15T11:06:00,966 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-11-15T11:06:00,968 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-11-15T11:06:00,973 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-11-15T11:06:00,977 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-11-15T11:06:00,980 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-11-15T11:06:00,986 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-11-15T11:06:00,990 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2021-11-15T11:06:00,995 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:00,999 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,003 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,007 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,011 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,015 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,020 copying build/lib/sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,025 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,031 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,045 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,051 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,061 copying build/lib/sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,067 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,073 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,105 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,112 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,120 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,143 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,148 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,154 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,164 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,205 copying build/lib/sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,211 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,221 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,227 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,235 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,240 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,246 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,263 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,267 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,312 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,326 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,330 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,335 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,339 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,380 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,385 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,424 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,431 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,438 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,445 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,450 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,457 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,468 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,475 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,483 copying build/lib/sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,489 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,494 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,505 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,513 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,521 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,527 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,532 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,538 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,544 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,549 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,556 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,625 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,631 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,636 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,649 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-11-15T11:06:01,669 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-11-15T11:06:01,672 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-11-15T11:06:01,679 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-11-15T11:06:01,685 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-11-15T11:06:01,695 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-11-15T11:06:01,702 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,705 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,712 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,739 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,744 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,797 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,833 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,850 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:01,867 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,067 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,075 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,082 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,529 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,542 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,560 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,600 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,608 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,618 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,624 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,633 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,674 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,681 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:02,735 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:03,210 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:03,219 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:03,238 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:03,249 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:03,257 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-11-15T11:06:03,273 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-11-15T11:06:03,277 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-11-15T11:06:03,284 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-11-15T11:06:03,291 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,297 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,302 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,317 creating build/bdist.linux-armv7l/wheel/sequana/utils 2021-11-15T11:06:03,320 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-11-15T11:06:03,329 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-11-15T11:06:03,337 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-11-15T11:06:03,341 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-11-15T11:06:03,346 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-11-15T11:06:03,350 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-11-15T11:06:03,355 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,364 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,370 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,377 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,386 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,396 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,403 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,410 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2021-11-15T11:06:03,413 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2021-11-15T11:06:03,424 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2021-11-15T11:06:03,430 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2021-11-15T11:06:03,438 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,446 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,453 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,460 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,466 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,477 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,484 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,491 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,499 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,508 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,510 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,516 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,523 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,530 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,540 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,548 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,553 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,558 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,564 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,569 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,575 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,582 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,589 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,598 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,605 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,611 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,617 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,622 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,628 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,635 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-11-15T11:06:03,641 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,649 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,658 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,665 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,671 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,676 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,681 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,689 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,699 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,703 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,709 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,714 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,722 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,729 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,735 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,741 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,748 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,753 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,763 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,770 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-11-15T11:06:03,777 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,784 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,792 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,801 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,810 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,817 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2021-11-15T11:06:03,827 running install_egg_info 2021-11-15T11:06:03,881 running egg_info 2021-11-15T11:06:03,884 writing requirements to sequana.egg-info/requires.txt 2021-11-15T11:06:03,887 writing dependency_links to sequana.egg-info/dependency_links.txt 2021-11-15T11:06:03,891 writing top-level names to sequana.egg-info/top_level.txt 2021-11-15T11:06:03,894 writing sequana.egg-info/PKG-INFO 2021-11-15T11:06:03,902 writing entry points to sequana.egg-info/entry_points.txt 2021-11-15T11:06:04,139 reading manifest file 'sequana.egg-info/SOURCES.txt' 2021-11-15T11:06:04,171 reading manifest template 'MANIFEST.in' 2021-11-15T11:06:04,181 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-11-15T11:06:04,188 warning: no previously-included files matching '*pyc' found under directory '*' 2021-11-15T11:06:06,303 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-11-15T11:06:06,309 warning: no previously-included files matching '*' found under directory 'test' 2021-11-15T11:06:06,315 warning: no previously-included files found matching 'sequana/rm2.py' 2021-11-15T11:06:06,397 writing manifest file 'sequana.egg-info/SOURCES.txt' 2021-11-15T11:06:06,403 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.12.6-py3.5.egg-info 2021-11-15T11:06:06,444 running install_scripts 2021-11-15T11:06:06,762 creating build/bdist.linux-armv7l/wheel/sequana-0.12.6.dist-info/WHEEL 2021-11-15T11:06:14,341 Building wheel for sequana (setup.py): finished with status 'done' 2021-11-15T11:06:14,571 Created wheel for sequana: filename=sequana-0.12.6-py3-none-any.whl size=13744779 sha256=f96bf81ba5b7417eb310ae3d15f57828621eceb4ec4b8c98f75057fd4985e4b2 2021-11-15T11:06:14,571 Stored in directory: /tmp/pip-ephem-wheel-cache-sb9uv24n/wheels/e0/c6/87/b5d6bd796438c6697c7c1eb37dde908200d8c840ec079264d8 2021-11-15T11:06:14,643 Successfully built sequana 2021-11-15T11:06:17,016 Removed build tracker: '/tmp/pip-req-tracker-6y3jjn8j'