2021-11-16T14:44:36,469 Created temporary directory: /tmp/pip-ephem-wheel-cache-c_z95xpi
2021-11-16T14:44:36,472 Created temporary directory: /tmp/pip-req-tracker-dljpym7u
2021-11-16T14:44:36,472 Initialized build tracking at /tmp/pip-req-tracker-dljpym7u
2021-11-16T14:44:36,472 Created build tracker: /tmp/pip-req-tracker-dljpym7u
2021-11-16T14:44:36,473 Entered build tracker: /tmp/pip-req-tracker-dljpym7u
2021-11-16T14:44:36,473 Created temporary directory: /tmp/pip-wheel-iqoqmjpw
2021-11-16T14:44:36,506 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-16T14:44:36,508 2 location(s) to search for versions of pysam:
2021-11-16T14:44:36,508 * https://pypi.org/simple/pysam/
2021-11-16T14:44:36,508 * https://www.piwheels.org/simple/pysam/
2021-11-16T14:44:36,509 Fetching project page and analyzing links: https://pypi.org/simple/pysam/
2021-11-16T14:44:36,509 Getting page https://pypi.org/simple/pysam/
2021-11-16T14:44:36,511 Found index url https://pypi.org/simple
2021-11-16T14:44:36,678   Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz#sha256=d8d437fadc283be6fc96f932a1417c43f5fb0a7cf267f8a750e819aa2babe1c5 (from https://pypi.org/simple/pysam/), version: 0.4
2021-11-16T14:44:36,678   Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz#sha256=4a358266f93c103e4f003ae9a539fef1d91f572a6cbe7ace9a03ea220712d195 (from https://pypi.org/simple/pysam/), version: 0.4.1
2021-11-16T14:44:36,678   Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz#sha256=d082ee3c8d7f105968719170956456d3660ef3a199bf53f9667f959ca4d11200 (from https://pypi.org/simple/pysam/), version: 0.7.6
2021-11-16T14:44:36,679   Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz#sha256=c9f3018482eec99ee199dda3fdef2aa7424dde6574672a4c0d209a10985755cc (from https://pypi.org/simple/pysam/), version: 0.7.7
2021-11-16T14:44:36,679   Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz#sha256=d5deb64156ced1b95799854d8e9d5acdea1b2c9fdb7ffc3348e599a907bb810a (from https://pypi.org/simple/pysam/), version: 0.7.8
2021-11-16T14:44:36,679   Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz#sha256=50cb6a68ce18eec604a6ef10fd6e85d4b836aa570758acbe02c54e0ff51bf282 (from https://pypi.org/simple/pysam/), version: 0.8.0
2021-11-16T14:44:36,680   Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz#sha256=a9105a1aa65f5a93e1e2cfb0e3009190b7a8a82ad7fb29cceaaaffbba08966b9 (from https://pypi.org/simple/pysam/), version: 0.8.1
2021-11-16T14:44:36,680   Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz#sha256=90cf4c05358b8e545f4f00c0637488d85b78d6170af093cd1e4762128b6427f2 (from https://pypi.org/simple/pysam/), version: 0.8.2
2021-11-16T14:44:36,680   Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz#sha256=8dc442b5b185bda37be8c3053b7f4fac438e3836dc2b190254d666d67ebb3a03 (from https://pypi.org/simple/pysam/), version: 0.8.2.1
2021-11-16T14:44:36,680   Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz#sha256=343e91a1882278455ef9a5f3c9fc4921c37964341785bf22432381d18e6d115e (from https://pypi.org/simple/pysam/), version: 0.8.3
2021-11-16T14:44:36,681   Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz#sha256=30cf23931edf8a426678811f234bca4a83a53438028b323f2ef55792562d9dea (from https://pypi.org/simple/pysam/), version: 0.8.4
2021-11-16T14:44:36,681   Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz#sha256=90edf568835245e03eea176196cfafdfcb3af7e5fb40e48923a63f75c266c03c (from https://pypi.org/simple/pysam/), version: 0.9.0
2021-11-16T14:44:36,681   Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz#sha256=2969e080d435c62c4dd497294dfdb36eb92cd31f551c1030c0159481a5ef101e (from https://pypi.org/simple/pysam/), version: 0.9.1
2021-11-16T14:44:36,682   Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz#sha256=c3c106fc5e93f226d7830bbb4bb2c7238a993ef7de07c627f90944140a997d3d (from https://pypi.org/simple/pysam/), version: 0.9.1.1
2021-11-16T14:44:36,682   Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz#sha256=da49d15c3adca67c46d0aa418e8d2b27d1667890a444886dd95d6da55e6e5e2b (from https://pypi.org/simple/pysam/), version: 0.9.1.2
2021-11-16T14:44:36,682   Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz#sha256=137fa5e288284e3708a7287ad9b4d08c0f069af8da5811e575e9aeabdcfa227b (from https://pypi.org/simple/pysam/), version: 0.9.1.3
2021-11-16T14:44:36,682   Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz#sha256=56ee7f8d07fa9d78b5c00dfbf335c95edbfed1518a2c14f8f108e58599922dc4 (from https://pypi.org/simple/pysam/), version: 0.9.1.4
2021-11-16T14:44:36,683   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl#sha256=7fe3ee09e9eb70887f04900ce9444ab52ad16b78b85be6e3b1857a14b2ee36f9 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,683   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl#sha256=01b3c10052c561f9dacf98478ef7195dc68a92706eb6d279c8fdc3c0ef14629a (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,683   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl#sha256=e2b86a6aac3df4fd5f658604af934c7fce61ba4ade188d1af1c17cce17d38094 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,683   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl#sha256=a2838dc68f6ec91957347c8e286bec9d2a8557ae44bc59232aefc6c5a7a25e81 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,683   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl#sha256=81e3a70c6801b92714123d576f23aab792f5111a49282f7c050fd2620d38e465 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,684   Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz#sha256=1e925d2c9bf7b1753392da4fee3c0c184f8b062acd074905caa20569f87354e0 (from https://pypi.org/simple/pysam/), version: 0.10.0
2021-11-16T14:44:36,684   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl#sha256=0196588bf9a2d499abf1882e3c04431dc81faaa4432feddd6eb03fe7a430a62e (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,684   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl#sha256=9de9d06f2de8949d062cd995bee982940283c309426d7ee287a2de22e3b2e92e (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,684   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl#sha256=f3280509966dbc44e1d5669ce9fe523e67eebe970f304e626f210df999b12731 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,684   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl#sha256=1943e27e8584dacbd1098fc17b55c6fc80765c1df6b9fb4844d3925232453afe (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,685   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl#sha256=4f598c325cefba2b09adc53e4e7fd669f6855ab6db52f27ff4d73da48bc2b2a9 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,685   Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz#sha256=815c8a6150c5fe21df227e730dd57e4212984ae568854fcc5873e243072dcbad (from https://pypi.org/simple/pysam/), version: 0.11
2021-11-16T14:44:36,685   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=4ade89003f13c6eb6b243c76eb782b2bcf3f8320a7675758b553d7c2e7214743 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,685   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=5a4ac394b644c7cb9782351aff7e782c7f4c670df54c0bb170fa36c10e1a5c86 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,686   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl#sha256=19f37b28ec1f5125a47080ea2b87cd801a8cf3c67dd4f2a872cfd0ecb6673ecb (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,686   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=ec38dddadc0c6cbcbfc38f481ffbb33f888a91665a29bca10077a4380eeb4aae (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,686   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=1663730a69bfe7e84e7dcd9bcc3a35d8d2ad2c023746f1806b678e294fe21b8a (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,686   Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz#sha256=fbc710f82cb4334b3b88be9b7a9781547456fdcb2135755b68e041e96fc28de1 (from https://pypi.org/simple/pysam/), version: 0.11.1
2021-11-16T14:44:36,686   Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz#sha256=d64e1b5b6b0aeac2effa7f9f6117f5413ccf6a0028935d45491a1553154a17b1 (from https://pypi.org/simple/pysam/), version: 0.11.2
2021-11-16T14:44:36,687   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=da2dc02fc9d92ed72bdcf22e03e06ba06c6119c858b1de5cec992e2e98977ea5 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,687   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=713e897ab7e3a82cb92a0a5fda1fd7e968c75a4d990c778e2433cf6f10d12b2f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,687   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl#sha256=89d1715f90e65ffce7dfca7fa5040b8965b6324f1b343ebd540500eed9c1862b (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,687   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=acbfdffa8dae9dd3569af65569639694f128a598691ec471de3c54e3831baee4 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,687   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=71f2c4ef61ac64954bf1fdfcf6ea1912350145ede753db10e04fb3d87ffec2e2 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,688   Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz#sha256=5de4744e451652db70bfd5494606fde8d4c58d3ae55b9816329dc905c80a7c60 (from https://pypi.org/simple/pysam/), version: 0.11.2.1
2021-11-16T14:44:36,688   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl#sha256=e7826460c3178ff35e91b511a8fb3e978fc916c3e1d9b388eb9f62bb51410b58 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,688   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl#sha256=7af66c50f7766419ad458f55b0349597361a38eb45b7d98e3730863f60d7d4ae (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,688   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl#sha256=6a86f8ed81ceae1122edfcff65329b260a359ed601a657f47f33f7009d8c2516 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,689   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl#sha256=8362ef266063047d156770ae2bff875aa7ec0d906b8b298479705e6117370f6f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,689   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl#sha256=ee5126b00628fd959cb99d4ff196493c0bc952f51dcb558f4154407c3d31a10b (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,689   Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz#sha256=9cd66406eaff40986302e9e1edc5872538f0fed9623aa8ceb15f9b80bbabfe03 (from https://pypi.org/simple/pysam/), version: 0.11.2.2
2021-11-16T14:44:36,689   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl#sha256=dcd17f2dbe7b9e0742856cd23fd4ae7d6ecc9c48e3baa91bf019b63d935fa1e9 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,690   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl#sha256=e8205678d96c33f122caa1e12dcb41a2db20d9147ef02c4f4f9c76b98a6362d8 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,690   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl#sha256=b50500a772b9e3b13daea2ca43bfc0c7251369bf361b6579ad579d4f8887b9d2 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,690   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl#sha256=454e083cb80cf14fd73b5230c9f58836215b0bc961ec3d88a25897d05d24cd5f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,690   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl#sha256=692afc5ae93ca6dbd6aaf12d79e9c376d7df42e600ceb73dcf1c1d3c238d6a67 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,690   Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz#sha256=33922cb3277ed9a63457c1b6a9dcad2774a217ababcc97a854435be87ba80488 (from https://pypi.org/simple/pysam/), version: 0.12
2021-11-16T14:44:36,691   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=ecde3b5e8051c04ab455a5822e4b5dd58b48344ca2f256d6f0f899426e823b05 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,691   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=035238322ad06d853173ad4203f393e1c2fff9e6bb560b90a37890a77e4d9f1d (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,691   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl#sha256=02d818752e93a4263a6d41a4fc6e46ad6180e1bdc6906da0f88d7ef0a986ff14 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,691   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=a99cd626ff0fdc09b68a1cc9cc9551f4dc3c4cd49872583de1a2f39e69520923 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,691   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=f1cd051d474a72079dbeaa3d6cb1b26dac005af8e4cf71b4dddad7c66b08ce26 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,692   Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz#sha256=04837bf0b1313e57d50076f228463262b9982c410b973eb184c033528f83d523 (from https://pypi.org/simple/pysam/), version: 0.12.0.1
2021-11-16T14:44:36,692   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl#sha256=a87d86c69c4007b898e1c0256da1eef6f9c67d8bfaa2208591e7e43b02c8ee92 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,692   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl#sha256=d977b0cfed87ae9fc0fcac1b03a676f95ce9b6f574105311d7f1e106826d8256 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,692   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl#sha256=539203173afb0f8672284969077f32e487690dd1a3e7458d3cd1e2f69dfe7637 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,692   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl#sha256=c0b11efe9ffc66e4ccbbadb992a0ca39ba736ca985cb02423ec1a7ed95b3f6d8 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,693   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl#sha256=cd86023f429ef7eeb8dd19f85553c2f4544e2927e0d23d99cbc907f4c74dce8d (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,693   Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz#sha256=1829035f58bddf26b0cb6867968178701c2a243518ea697dcedeebff487979af (from https://pypi.org/simple/pysam/), version: 0.13
2021-11-16T14:44:36,693   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl#sha256=f08e3ee089a1691be837473a40eea097be7de3c066ce3ebc1e2d486d0ebda29c (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,693   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl#sha256=f0973c10a3377d5d8291aeebd03ce9a79192581903407b475223428b0843e063 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,694   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl#sha256=6da96be7861ca95a7c4378ac15c2e9372b45d99a3f5360d88e21a9d45fe6718c (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,694   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl#sha256=02cb2d210be93782179e94565ee7531a7e4ff2ddff05967ed9c502445a7544ed (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,694   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl#sha256=2aec5aebb90c1c1fe0f596984663773af7cc98ef1de0db047d93c99aac52177f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,694   Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz#sha256=c9c8ea82b4deee7607d5885fc7cc92311f06e765ff30e0b2b2d3d85b28cf5687 (from https://pypi.org/simple/pysam/), version: 0.14
2021-11-16T14:44:36,694   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=d571e8536b3bc9807577e0e2744247d1887b90a6ad005c0dedea7639bb04d5fd (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,695   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=dadf1c6c7c3be79d526c38fcf6ff577062efed814b17341a4b8fbde7226a9555 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,695   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl#sha256=3d064977832536287d95e657d9ed184a0cc6e331b877637b203d50d4762bec5e (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,695   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=4279edd397a32e665e20d53d878a5604b98cc57067a0fc3d58f6933a5b6f82fb (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,695   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=37fba70c6273329eb60383154189c6a72a960186d5e9d8cf0f757f2ba9f08b32 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,695   Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz#sha256=2e86f5228429d08975c8adb9030296699012a8deba8ba26cbfc09b374f792c97 (from https://pypi.org/simple/pysam/), version: 0.14.1
2021-11-16T14:44:36,696   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl#sha256=3cb1cda2a501751231fc7358d4b8d981ca13d9fe5e9a5a04ccd728a56a28bb96 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,696   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl#sha256=43165efe8f1d8b7e2dd254dae93e88b5ed3de4fb6e9c54f32274c1e2c6124a68 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,696   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl#sha256=c66d08f45dd2b3404d65429f792c9b79fac8ab29b09941aff0cb47cd29a7d16f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,696   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl#sha256=044541e8310c64993ba201cd9c32659acd2f1400a5094c52353030e082f2a831 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,696   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl#sha256=dbb2de0144fb16adaa49bfd67ca919e27404996bdd060a06bbcd82eb60ff09de (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,697   Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz#sha256=51e7030bebff68502a69fabc601727f827cd6e7c08c5899b11ad8c6084ba4ba5 (from https://pypi.org/simple/pysam/), version: 0.15.0
2021-11-16T14:44:36,697   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=cc6b5bcc464bebe5c932cb1ba0ff9d3a6193d9b72d05aba9f16e8d115c06149c (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,697   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=e1271bfb05a87cff378c88c956c96f6ae040a2d996104a31effa817929578e8f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,697   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl#sha256=d164917496b6569d727505fef0b6623dc3485d6f45ebd8394b124b155a3c0419 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,698   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=c54403c26490afdfc5db68a0ca1e846b94daa8ee0f571e278efda428257016af (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,698   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=8616649ad4e3538236636d068361bc9716ad45700f65bd46b7508cbc69ca49d7 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,698   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl#sha256=1173a05c88752f2b871cc902fa33769a85c052f28bf0a94946f4a1576e300bce (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,698   Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz#sha256=658421124c2f3de1b7445e03ca8413df0077f67ea9980abdaab0d1b5f7a8936f (from https://pypi.org/simple/pysam/), version: 0.15.1
2021-11-16T14:44:36,698   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl#sha256=34dd4cf08cbdea1329a140f5446c319992460d400b9851c0cb5607f3c58ad256 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,699   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl#sha256=236ae950c0194037ac3e8a11fa7bda6b46db17ee3f86e1111775ed4b9cdaf95b (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,699   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl#sha256=975fbd395b5c4d360be5fde2e34d418c64718ba732ae5b2bfb712e6cefa750d5 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,699   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl#sha256=1e0a6abf4fe0d3934fee8d662f6fda28e466b60209b5b1fd41070e1ccfbe87f2 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,699   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl#sha256=0f063380ebd727f58483b256fe21d90358527fbdf48b925ae2680cc1f2c553ae (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,699   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl#sha256=e8166058e01d5b7fd2d82c5fee29f9c22e6016091b8c397cc029f7cc2f2f61ff (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,700   Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz#sha256=d049efd91ed5b1af515aa30280bc9cb46a92ddd15d546c9b21ee68a6ed4055d9 (from https://pypi.org/simple/pysam/), version: 0.15.2
2021-11-16T14:44:36,700   Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz#sha256=a98dd0a164aa664b1ab30a36f653752f00e93c13deeb66868597f4b2a30f7265 (from https://pypi.org/simple/pysam/), version: 0.15.3
2021-11-16T14:44:36,700   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl#sha256=0b0f407ad96b3bd492017ee82a317ac0fc68dc858ecba9119e4ae69b1cda9910 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,700   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl#sha256=5b6a2258e326204ee94bf4d482d9a137ce8cbb3f3cefada42c7f26802d15b95d (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,701   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl#sha256=495815ef466aefa80d949ac449cd364f21cb20ee56b1a0bd623352ad3f73bf14 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,701   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl#sha256=00a1f62e704410343ef6a6232f5bdd29f67f88326a89757e665dee035ef36112 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,701   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=3d5158231cab88cb8a931b78f34fb6eb939a093cb8d5273452cc12d3206e445e (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,701   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl#sha256=7c358f69620e7b9af7548a62ca2a1fb6b51c03fcdc79a0ca8d1839ad92a532ce (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,701   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl#sha256=2581ab403fdba02e2261cf2f9df783f24de5530e1f77c84236707f8d8706cd91 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,702   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl#sha256=00c7f094be02ba8daf2feb51467b70142f9cca22fb5336b504bc58568a2500de (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,702   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl#sha256=4ddcb84e471aff2f55beb5ed2d368dc6e773947c628a1a7b6d5ceec9c141ce51 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,702   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl#sha256=0f3e42cbc9bac07cf6a880c2ae318c24aea20f43a3f3562e53068266627cb7a7 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,702   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl#sha256=d9f116b2e32b678bbd95ba0c83a449d0a59f2deb04a6fc02f42b5cd9e406bde5 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,702   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl#sha256=5bcf5d49922aeaccd0dbf0b3e4327b03be2883814bf2476e83f20fc24d7be02b (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,703   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl#sha256=179e68c5acb8cc6a79a79441ba6cffb88d7c3afb74c7b170395c248cb7b9f138 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,703   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl#sha256=333e9e73addb0579aa8af08c6618b359bd038a3710428b7ce1caef0075392b3c (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,703   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl#sha256=62b72de5af5b8550f376a580fecb23b81d989140cf95f8465fef2c3d96006424 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,703   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl#sha256=28fd770354ecf621ee47425bfdcf012097fa7a8ff590b49ec953d059221886c2 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,703   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl#sha256=5a9730d9775dc30a8cc197ca3e5340b7c3cb63b66c387ecfd8e665426f083f65 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,703   Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz#sha256=a535e15cbd6e27f4ab74cabca30ca1df7eea283cb91d3b536d47fe113fee066f (from https://pypi.org/simple/pysam/), version: 0.15.4
2021-11-16T14:44:36,704   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl#sha256=688ac7f4d7f134a8c7193963c7cccbb3f3f630c51909bb76d809b4db35aaf8f0 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,704   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl#sha256=1cb17ff9562a5b075a609f070ab4b3290e8a8021eaf2016f4248ee4202e47957 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,704   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/24/537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd/pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl#sha256=d01e72eafea1867c714f0754339b3c549c44dc535e5c497601789ba1dc1f3fca (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,704   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/92/44f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df/pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl#sha256=f4e31ffd685d333431ac7e7dd74f83f4e14eff1905a4ef1188b2b03da8854f01 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,705   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f9/21/dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4/pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl#sha256=9c532f33b5379744941d8fcdf00e6d75aef48319372789836ff1c3f717b84563 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,705   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b6/ad/442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7/pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl#sha256=e1aa22051efa4305ca045209bb184731f8f8e20afc833716ed91e89f1533ff53 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,705   Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz#sha256=07c9d3a772f90e9907a68bc3f495e2c608018a92888b9cf9f1197cb3a35aa9c3 (from https://pypi.org/simple/pysam/), version: 0.16.0
2021-11-16T14:44:36,705   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=9e3597a49e4bc72c31199d6231018ad3034e08a8243b9f8086953afb2ab5a3af (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,705   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=a5a0fc1f0d724d0b7789341add26ba181ac009430021f0998f6083fb62432193 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,706   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=9da29490c666a963e5a7f6f5114e86c9b36a8a6adc2227f5772bdc38c09d2d37 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,706   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=107eca9050d8140910b5ea5c5a9e66313e1155eb44cc180e10f48f9cb71e8095 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,706   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl#sha256=f65659deadc4904984de24cb6f3878b6052cf504a2a85a50b80f2ff7939f96db (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,706   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl#sha256=3eb70111a5ed86cc7a048c9b2205087b1184093e6135f02ad7f144b206951452 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,706   Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz#sha256=d428a9768691d5ea3c28cc52a949c920ae691aa4c110a8b7328dc4d165ef1ad6 (from https://pypi.org/simple/pysam/), version: 0.16.0.1
2021-11-16T14:44:36,707   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=c4a8099cf474067eaf5e270b5e71433a9ea0e97af90262143a655528eb756cd9 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,707   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl#sha256=4d0a35dec9194bacbde0647ddf32ebf805a6724b0192758039c031fce849f01f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,707   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=6f802073d625a6a9b47aaaed6ff6b08e90ec4ad79df271073452fa8c7a62c529 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,707   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=cb2c3ca9ff3b5c9694846254fea9f8697406a35769b11767a312e97ad5c8cedd (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,707   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl#sha256=08f88fa4472e140e39c9ec3c01643563587a28e49c115ef9077295b0452342ac (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,708   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=097eedc82095ff52e020b6e0e099a171313e60083c68ad861ac474f325e2b7d0 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,708   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=4f5188fda840fe51144b8c56c45af014174295c3f539a40333f9e270ca0d5e01 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,708   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl#sha256=18478ac02511d6171bce1891b503031eaf5e22b7a38cf62e00f3a070a4a37da2 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,708   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=4032361c424fb3b27a7da7ddeba0de8acb6c548b025bdc03c8ffc6b306d7ee9a (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,708   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl#sha256=2fd8fa6205ad893082ec0aa1992446e3d9c63bfe9f7a3e59d81a956780e5cc2a (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,709   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl#sha256=7caada03fbec2e18b8eb2c80aabf8834ea2ceb12b2aa1c0fa6d4ba42b60d83fa (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,709   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=eb35399530188efe48ef136a043ba3acf9f538f1b11e946f3aaea9fd09c8cbde (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,709   Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz#sha256=5d140da81ca42f474006f5cc0fd66647f1b08d559af7026bbe9f01fab029bffd (from https://pypi.org/simple/pysam/), version: 0.17.0
2021-11-16T14:44:36,709   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl#sha256=ef5d8ad01cac8974cd09832c226cbb63a3f7c5bd63727d8e59447021ee16a186 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,710   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=ca0c9289dfdc5e1a81bccdb8305192cd14cf9730bd21320ceca949fde071a572 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,710   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=e13e496da3a432db24f424439834b0ab5f40700a3db6e610d06f8bd639d9fd2d (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,710   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=c90341434e7a99439174aa64ca5406f63528be4217d4401fb30ec4ea4629c559 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,710   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=a88f875114bd3d8efb7fade80e0640094383ec5043861aa575175fa9a56edf90 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,710   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=7ea2e019294e4bf25e4892b5de69c43f54fb6ac42b681265268aa322e1f36f5b (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,710   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=cfb162358c5284b31b2b88b10947e0f1013da2d85ba0fd0b5723dd142c15329e (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,711   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=9422c2d0b581c3d24f247c15bb8981569e636003c4d6cad39ccd1bf205a79f2c (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,711   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=cfffad99cf3968cf85aadb70a8a02303f9172ea21abe02d587c44f808c504f52 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,711   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=7a8a25fceaaa96e5b4c8b0a7fd6bb0b20b6c262dc4cc867c6d1467ac990f1d77 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,711   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=493988420db16e6ee03393518e4d272df05f0a35780248c08c61da7411e520e7 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,711   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=7f6a4ec58ad7995b791a71bf35f673ea794e734c587ea7329fca5cce9c53a7af (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,712   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl#sha256=0cfa16f76ed3c3119c7b3c8dfdcba9e010fbcdcf87eaa165351bb369da5a6bf1 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,712   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=2717509556fecddf7c73966fa62066c6a59a7d39b755d8972afa8d143a1d5aa5 (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,712   Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=f5a23a5dcf32f01c66d44e89113fa8f7522997ea43fbc0f98e5250a907911a5f (from https://pypi.org/simple/pysam/)
2021-11-16T14:44:36,712   Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz#sha256=1d6d49a0b3c626fae410a93d4c80583a8b5ddaacc9b46a080b250dbcebd30a59 (from https://pypi.org/simple/pysam/), version: 0.18.0
2021-11-16T14:44:36,713 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam/
2021-11-16T14:44:36,713 Getting page https://www.piwheels.org/simple/pysam/
2021-11-16T14:44:36,714 Found index url https://www.piwheels.org/simple
2021-11-16T14:44:36,991   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv6l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,991   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv7l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,991   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv6l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,991   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv7l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,991   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv6l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,992   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,992   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv6l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,992   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv7l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,992   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,992   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,993   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,993   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,993   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv6l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,993   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,993   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv6l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,994   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv7l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,994   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,994   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv7l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,994   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,994   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv7l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,995   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp34-cp34m-linux_armv7l.whl#sha256=c94eb91b2a476b0f28dffe6194d72d1853055291b9453996e0414cf39391af23 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,995   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv6l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,995   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv7l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,995   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,995   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,996   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,996   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,996   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,996   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,996   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,997   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,997   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,997   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,997   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,997   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,997   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,998   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,998   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,998   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,998   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,998   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,999   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,999   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,999   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,999   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:36,999   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,000   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,000   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,000   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv6l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,000   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,000   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,001   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,001   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,001   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,001   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,001   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,002   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv6l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,002   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv7l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,002   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv6l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,002   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv7l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,002   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,002   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,003   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,003   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,003   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv6l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,003   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,003   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv6l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,004   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,004   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv6l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,004   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,004   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv6l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,004   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv7l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,005   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv6l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,005   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv7l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,005   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv6l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,005   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv7l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,005   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,006   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,006   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,006   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,006   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv6l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,006   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv7l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,006   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,007   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,007   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,007   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,007   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,007   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,008   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,008   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,008   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,008   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,008   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,009   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,009   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,009   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,009   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,009   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,010   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,010   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,010   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,010   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,010   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,011   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,011   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,011   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,011   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,011   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,012   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,012   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,012   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,012   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,012   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,012   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,013   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv6l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,013   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,013   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,013   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,013   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,014   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv7l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,014   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,014   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,014   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,014   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,015   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,015   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,015   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv6l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,015   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,015   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,016   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,016   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv6l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,016   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv7l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,016   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv6l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,016   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv7l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,017   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,017   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv7l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,017   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,017   Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/)
2021-11-16T14:44:37,017 Skipping link: not a file: https://www.piwheels.org/simple/pysam/
2021-11-16T14:44:37,018 Skipping link: not a file: https://pypi.org/simple/pysam/
2021-11-16T14:44:37,040 Given no hashes to check 1 links for project 'pysam': discarding no candidates
2021-11-16T14:44:37,059 Collecting pysam==0.18.0
2021-11-16T14:44:37,061   Created temporary directory: /tmp/pip-unpack-oabnckhv
2021-11-16T14:44:37,108   Downloading pysam-0.18.0.tar.gz (3.8 MB)
2021-11-16T14:44:39,582   Added pysam==0.18.0 from https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz#sha256=1d6d49a0b3c626fae410a93d4c80583a8b5ddaacc9b46a080b250dbcebd30a59 to build tracker '/tmp/pip-req-tracker-dljpym7u'
2021-11-16T14:44:39,583     Running setup.py (path:/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/setup.py) egg_info for package pysam
2021-11-16T14:44:39,584     Created temporary directory: /tmp/pip-pip-egg-info-xcl3cl78
2021-11-16T14:44:39,584     Running command python setup.py egg_info
2021-11-16T14:44:40,404     # pysam: cython is available - using cythonize if necessary
2021-11-16T14:44:40,405     # pysam: htslib mode is shared
2021-11-16T14:44:40,405     # pysam: HTSLIB_CONFIGURE_OPTIONS=None
2021-11-16T14:44:40,405     # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread
2021-11-16T14:44:40,405     # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=.  -fstack-protector-strong -Wformat -Werror=format-security  -g -fwrapv -O2
2021-11-16T14:44:40,406     # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2
2021-11-16T14:44:40,919     checking for gcc... arm-linux-gnueabihf-gcc -pthread
2021-11-16T14:44:41,266     checking whether the C compiler works... yes
2021-11-16T14:44:41,267     checking for C compiler default output file name... a.out
2021-11-16T14:44:41,463     checking for suffix of executables...
2021-11-16T14:44:41,695     checking whether we are cross compiling... no
2021-11-16T14:44:41,811     checking for suffix of object files... o
2021-11-16T14:44:41,917     checking whether we are using the GNU C compiler... yes
2021-11-16T14:44:42,015     checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes
2021-11-16T14:44:42,164     checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed
2021-11-16T14:44:42,167     checking for ranlib... ranlib
2021-11-16T14:44:42,191     checking for grep that handles long lines and -e... /usr/bin/grep
2021-11-16T14:44:42,305     checking for C compiler warning flags... unknown
2021-11-16T14:44:42,309     checking for pkg-config... /usr/bin/pkg-config
2021-11-16T14:44:42,318     checking pkg-config is at least version 0.9.0... yes
2021-11-16T14:44:42,321     checking for special C compiler options needed for large files... no
2021-11-16T14:44:42,568     checking for _FILE_OFFSET_BITS value needed for large files... 64
2021-11-16T14:44:42,588     checking shared library type for unknown-Linux... plain .so
2021-11-16T14:44:42,792     checking whether the compiler accepts -fvisibility=hidden... yes
2021-11-16T14:44:42,939     checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E
2021-11-16T14:44:43,095     checking for egrep... /usr/bin/grep -E
2021-11-16T14:44:43,640     checking for ANSI C header files... yes
2021-11-16T14:44:43,795     checking for sys/types.h... yes
2021-11-16T14:44:43,972     checking for sys/stat.h... yes
2021-11-16T14:44:44,144     checking for stdlib.h... yes
2021-11-16T14:44:44,331     checking for string.h... yes
2021-11-16T14:44:44,522     checking for memory.h... yes
2021-11-16T14:44:44,705     checking for strings.h... yes
2021-11-16T14:44:44,900     checking for inttypes.h... yes
2021-11-16T14:44:45,086     checking for stdint.h... yes
2021-11-16T14:44:45,280     checking for unistd.h... yes
2021-11-16T14:44:45,317     checking for stdlib.h... (cached) yes
2021-11-16T14:44:45,356     checking for unistd.h... (cached) yes
2021-11-16T14:44:45,585     checking for sys/param.h... yes
2021-11-16T14:44:45,824     checking for getpagesize... yes
2021-11-16T14:44:46,194     checking for working mmap... yes
2021-11-16T14:44:46,435     checking for gmtime_r... yes
2021-11-16T14:44:46,694     checking for fsync... yes
2021-11-16T14:44:46,952     checking for drand48... yes
2021-11-16T14:44:47,228     checking for srand48_deterministic... no
2021-11-16T14:44:47,442     checking whether fdatasync is declared... yes
2021-11-16T14:44:47,653     checking for fdatasync... yes
2021-11-16T14:44:48,143     checking for library containing log... -lm
2021-11-16T14:44:48,301     checking for zlib.h... yes
2021-11-16T14:44:48,528     checking for inflate in -lz... yes
2021-11-16T14:44:48,759     checking for library containing recv... none required
2021-11-16T14:44:48,875     checking for bzlib.h... yes
2021-11-16T14:44:49,089     checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
2021-11-16T14:44:49,292     checking for lzma.h... yes
2021-11-16T14:44:49,515     checking for lzma_easy_buffer_encode in -llzma... yes
2021-11-16T14:44:49,521     checking whether htscodecs files are present... yes
2021-11-16T14:44:49,634     checking for libdeflate.h... yes
2021-11-16T14:44:49,848     checking for libdeflate_deflate_compress in -ldeflate... yes
2021-11-16T14:44:50,090     checking for curl/curl.h... yes
2021-11-16T14:44:50,565     checking for curl_easy_pause in -lcurl... yes
2021-11-16T14:44:50,825     checking for CCHmac... no
2021-11-16T14:44:51,484     checking for library containing HMAC... -lcrypto
2021-11-16T14:44:51,708     checking for library containing regcomp... none required
2021-11-16T14:44:51,873     checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
2021-11-16T14:44:51,960     configure: creating ./config.status
2021-11-16T14:44:52,452     config.status: creating config.mk
2021-11-16T14:44:52,515     config.status: creating htslib.pc.tmp
2021-11-16T14:44:52,585     config.status: creating config.h
2021-11-16T14:44:52,633     config.status: linking htscodecs_bundled.mk to htscodecs.mk
2021-11-16T14:44:53,057     # pysam: htslib configure options: --enable-libcurl
2021-11-16T14:44:53,057     # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o
2021-11-16T14:44:53,057     # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto
2021-11-16T14:44:53,058     # pysam: htslib_config PLATFORM=default
2021-11-16T14:44:53,058     # pysam: config_option: ENABLE_GCS=1
2021-11-16T14:44:53,058     # pysam: config_option: ENABLE_PLUGINS=0
2021-11-16T14:44:53,058     # pysam: config_option: ENABLE_S3=1
2021-11-16T14:44:53,058     # pysam: config_option: HAVE_COMMONCRYPTO=0
2021-11-16T14:44:53,058     # pysam: config_option: HAVE_HMAC=1
2021-11-16T14:44:53,058     # pysam: config_option: HAVE_LIBBZ2=1
2021-11-16T14:44:53,058     # pysam: config_option: HAVE_LIBCURL=1
2021-11-16T14:44:53,059     # pysam: config_option: HAVE_LIBDEFLATE=1
2021-11-16T14:44:53,059     # pysam: config_option: HAVE_LIBLZMA=1
2021-11-16T14:44:53,059     # pysam: config_option: HAVE_MMAP=1
2021-11-16T14:44:53,059     running egg_info
2021-11-16T14:44:53,059     creating /tmp/pip-pip-egg-info-xcl3cl78/pysam.egg-info
2021-11-16T14:44:53,060     writing /tmp/pip-pip-egg-info-xcl3cl78/pysam.egg-info/PKG-INFO
2021-11-16T14:44:53,063     writing dependency_links to /tmp/pip-pip-egg-info-xcl3cl78/pysam.egg-info/dependency_links.txt
2021-11-16T14:44:53,065     writing top-level names to /tmp/pip-pip-egg-info-xcl3cl78/pysam.egg-info/top_level.txt
2021-11-16T14:44:53,066     writing manifest file '/tmp/pip-pip-egg-info-xcl3cl78/pysam.egg-info/SOURCES.txt'
2021-11-16T14:44:53,220     package init file 'samtools/__init__.py' not found (or not a regular file)
2021-11-16T14:44:53,221     package init file 'bcftools/__init__.py' not found (or not a regular file)
2021-11-16T14:44:53,222     package init file 'htslib/__init__.py' not found (or not a regular file)
2021-11-16T14:44:53,223     package init file 'htslib/htslib/__init__.py' not found (or not a regular file)
2021-11-16T14:44:53,249     reading manifest file '/tmp/pip-pip-egg-info-xcl3cl78/pysam.egg-info/SOURCES.txt'
2021-11-16T14:44:53,250     reading manifest template 'MANIFEST.in'
2021-11-16T14:44:53,252     warning: no files found matching 'KNOWN_BUGS'
2021-11-16T14:44:53,252     warning: no files found matching 'THANKS'
2021-11-16T14:44:53,261     no previously-included directories found matching 'tests/'
2021-11-16T14:44:53,399     adding license file 'COPYING'
2021-11-16T14:44:53,399     adding license file 'AUTHORS'
2021-11-16T14:44:53,423     writing manifest file '/tmp/pip-pip-egg-info-xcl3cl78/pysam.egg-info/SOURCES.txt'
2021-11-16T14:44:53,492   Source in /tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 has version 0.18.0, which satisfies requirement pysam==0.18.0 from https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz#sha256=1d6d49a0b3c626fae410a93d4c80583a8b5ddaacc9b46a080b250dbcebd30a59
2021-11-16T14:44:53,493   Removed pysam==0.18.0 from https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz#sha256=1d6d49a0b3c626fae410a93d4c80583a8b5ddaacc9b46a080b250dbcebd30a59 from build tracker '/tmp/pip-req-tracker-dljpym7u'
2021-11-16T14:44:53,497 Created temporary directory: /tmp/pip-unpack-k2fp54lo
2021-11-16T14:44:53,497 Building wheels for collected packages: pysam
2021-11-16T14:44:53,502   Created temporary directory: /tmp/pip-wheel-vnxem405
2021-11-16T14:44:53,502   Building wheel for pysam (setup.py): started
2021-11-16T14:44:53,503   Destination directory: /tmp/pip-wheel-vnxem405
2021-11-16T14:44:53,503   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vnxem405
2021-11-16T14:44:54,307   # pysam: cython is available - using cythonize if necessary
2021-11-16T14:44:54,308   # pysam: htslib mode is shared
2021-11-16T14:44:54,308   # pysam: HTSLIB_CONFIGURE_OPTIONS=None
2021-11-16T14:44:54,309   # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread
2021-11-16T14:44:54,309   # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=.  -fstack-protector-strong -Wformat -Werror=format-security  -g -fwrapv -O2
2021-11-16T14:44:54,309   # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2
2021-11-16T14:44:54,814   checking for gcc... arm-linux-gnueabihf-gcc -pthread
2021-11-16T14:44:55,164   checking whether the C compiler works... yes
2021-11-16T14:44:55,166   checking for C compiler default output file name... a.out
2021-11-16T14:44:55,357   checking for suffix of executables...
2021-11-16T14:44:55,582   checking whether we are cross compiling... no
2021-11-16T14:44:55,706   checking for suffix of object files... o
2021-11-16T14:44:55,814   checking whether we are using the GNU C compiler... yes
2021-11-16T14:44:55,914   checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes
2021-11-16T14:44:56,068   checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed
2021-11-16T14:44:56,070   checking for ranlib... ranlib
2021-11-16T14:44:56,081   checking for grep that handles long lines and -e... /usr/bin/grep
2021-11-16T14:44:56,164   checking for C compiler warning flags... unknown
2021-11-16T14:44:56,168   checking for pkg-config... /usr/bin/pkg-config
2021-11-16T14:44:56,177   checking pkg-config is at least version 0.9.0... yes
2021-11-16T14:44:56,180   checking for special C compiler options needed for large files... no
2021-11-16T14:44:56,425   checking for _FILE_OFFSET_BITS value needed for large files... 64
2021-11-16T14:44:56,444   checking shared library type for unknown-Linux... plain .so
2021-11-16T14:44:56,658   checking whether the compiler accepts -fvisibility=hidden... yes
2021-11-16T14:44:56,806   checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E
2021-11-16T14:44:56,968   checking for egrep... /usr/bin/grep -E
2021-11-16T14:44:57,533   checking for ANSI C header files... yes
2021-11-16T14:44:57,694   checking for sys/types.h... yes
2021-11-16T14:44:57,875   checking for sys/stat.h... yes
2021-11-16T14:44:58,060   checking for stdlib.h... yes
2021-11-16T14:44:58,249   checking for string.h... yes
2021-11-16T14:44:58,441   checking for memory.h... yes
2021-11-16T14:44:58,635   checking for strings.h... yes
2021-11-16T14:44:58,826   checking for inttypes.h... yes
2021-11-16T14:44:59,020   checking for stdint.h... yes
2021-11-16T14:44:59,225   checking for unistd.h... yes
2021-11-16T14:44:59,264   checking for stdlib.h... (cached) yes
2021-11-16T14:44:59,304   checking for unistd.h... (cached) yes
2021-11-16T14:44:59,538   checking for sys/param.h... yes
2021-11-16T14:44:59,782   checking for getpagesize... yes
2021-11-16T14:45:00,151   checking for working mmap... yes
2021-11-16T14:45:00,406   checking for gmtime_r... yes
2021-11-16T14:45:00,658   checking for fsync... yes
2021-11-16T14:45:00,915   checking for drand48... yes
2021-11-16T14:45:01,209   checking for srand48_deterministic... no
2021-11-16T14:45:01,426   checking whether fdatasync is declared... yes
2021-11-16T14:45:01,643   checking for fdatasync... yes
2021-11-16T14:45:02,142   checking for library containing log... -lm
2021-11-16T14:45:02,282   checking for zlib.h... yes
2021-11-16T14:45:02,497   checking for inflate in -lz... yes
2021-11-16T14:45:02,734   checking for library containing recv... none required
2021-11-16T14:45:02,849   checking for bzlib.h... yes
2021-11-16T14:45:03,063   checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
2021-11-16T14:45:03,198   checking for lzma.h... yes
2021-11-16T14:45:03,427   checking for lzma_easy_buffer_encode in -llzma... yes
2021-11-16T14:45:03,433   checking whether htscodecs files are present... yes
2021-11-16T14:45:03,540   checking for libdeflate.h... yes
2021-11-16T14:45:03,776   checking for libdeflate_deflate_compress in -ldeflate... yes
2021-11-16T14:45:03,951   checking for curl/curl.h... yes
2021-11-16T14:45:04,337   checking for curl_easy_pause in -lcurl... yes
2021-11-16T14:45:04,615   checking for CCHmac... no
2021-11-16T14:45:05,287   checking for library containing HMAC... -lcrypto
2021-11-16T14:45:05,511   checking for library containing regcomp... none required
2021-11-16T14:45:05,680   checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
2021-11-16T14:45:05,772   configure: creating ./config.status
2021-11-16T14:45:06,251   config.status: creating config.mk
2021-11-16T14:45:06,317   config.status: creating htslib.pc.tmp
2021-11-16T14:45:06,394   config.status: creating config.h
2021-11-16T14:45:06,426   config.status: config.h is unchanged
2021-11-16T14:45:06,435   config.status: linking htscodecs_bundled.mk to htscodecs.mk
2021-11-16T14:45:06,556   # pysam: htslib configure options: --enable-libcurl
2021-11-16T14:45:06,685   # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o
2021-11-16T14:45:06,686   # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto
2021-11-16T14:45:06,686   # pysam: htslib_config PLATFORM=default
2021-11-16T14:45:06,691   # pysam: config_option: ENABLE_GCS=1
2021-11-16T14:45:06,691   # pysam: config_option: ENABLE_PLUGINS=0
2021-11-16T14:45:06,691   # pysam: config_option: ENABLE_S3=1
2021-11-16T14:45:06,691   # pysam: config_option: HAVE_COMMONCRYPTO=0
2021-11-16T14:45:06,692   # pysam: config_option: HAVE_HMAC=1
2021-11-16T14:45:06,692   # pysam: config_option: HAVE_LIBBZ2=1
2021-11-16T14:45:06,692   # pysam: config_option: HAVE_LIBCURL=1
2021-11-16T14:45:06,692   # pysam: config_option: HAVE_LIBDEFLATE=1
2021-11-16T14:45:06,692   # pysam: config_option: HAVE_LIBLZMA=1
2021-11-16T14:45:06,693   # pysam: config_option: HAVE_MMAP=1
2021-11-16T14:45:06,900   running bdist_wheel
2021-11-16T14:45:06,904   running build
2021-11-16T14:45:06,905   running build_py
2021-11-16T14:45:07,046   creating build
2021-11-16T14:45:07,046   creating build/lib.linux-armv7l-3.9
2021-11-16T14:45:07,047   creating build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,048   copying pysam/bcftools.py -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,050   copying pysam/Pileup.py -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,053   copying pysam/version.py -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,054   copying pysam/__init__.py -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,056   copying pysam/config.py -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,058   copying pysam/samtools.py -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,060   copying pysam/utils.py -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,063   creating build/lib.linux-armv7l-3.9/pysam/include
2021-11-16T14:45:07,064   copying pysam/include/__init__.py -> build/lib.linux-armv7l-3.9/pysam/include
2021-11-16T14:45:07,065   package init file 'samtools/__init__.py' not found (or not a regular file)
2021-11-16T14:45:07,066   package init file 'bcftools/__init__.py' not found (or not a regular file)
2021-11-16T14:45:07,067   package init file 'htslib/__init__.py' not found (or not a regular file)
2021-11-16T14:45:07,068   package init file 'htslib/htslib/__init__.py' not found (or not a regular file)
2021-11-16T14:45:07,101   copying pysam/libctabix.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,108   copying pysam/libcutils.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,117   copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,121   copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,125   copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,129   copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,132   copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,135   copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,138   copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,141   copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,143   copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,149   copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,152   copying pysam/cbcftools_util.h -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,154   copying pysam/htslib_util.h -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,156   copying pysam/csamtools_util.h -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,158   copying pysam/pysam_stream.h -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,161   copying pysam/pysam_util.h -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,163   copying pysam/version.h -> build/lib.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,166   creating build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,166   copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,170   copying samtools/tmp_file.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,173   copying samtools/sam_opts.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,176   copying samtools/bedidx.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,178   copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,180   copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,182   copying samtools/samtools.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,184   copying samtools/sample.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,187   copying samtools/config.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,189   copying samtools/stats_isize.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,191   copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,194   copying samtools/bam.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,196   copying samtools/bam2bcf.h -> build/lib.linux-armv7l-3.9/pysam/include/samtools
2021-11-16T14:45:07,199   creating build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,200   copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,203   copying bcftools/vcmp.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,205   copying bcftools/convert.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,208   copying bcftools/str_finder.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,211   copying bcftools/bcftools.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,214   copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,217   copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,220   copying bcftools/kheap.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,223   copying bcftools/utlist.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,227   copying bcftools/dist.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,230   copying bcftools/prob1.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,232   copying bcftools/bam_sample.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,234   copying bcftools/call.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,237   copying bcftools/filter.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,239   copying bcftools/config.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,241   copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,244   copying bcftools/mw.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,248   copying bcftools/gvcf.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,251   copying bcftools/extsort.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,253   copying bcftools/regidx.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,256   copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,258   copying bcftools/rbuf.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,261   copying bcftools/variantkey.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,264   copying bcftools/hclust.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,267   copying bcftools/ploidy.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,269   copying bcftools/HMM.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,272   copying bcftools/hex.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,274   copying bcftools/bin.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,277   copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,280   copying bcftools/kmin.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,282   copying bcftools/abuf.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,284   copying bcftools/cols.h -> build/lib.linux-armv7l-3.9/pysam/include/bcftools
2021-11-16T14:45:07,287   creating build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,287   copying htslib/textutils_internal.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,291   copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,293   copying htslib/sam_internal.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,295   copying htslib/config.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,298   copying htslib/hfile_internal.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,301   copying htslib/header.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,304   copying htslib/hts_internal.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,306   copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib
2021-11-16T14:45:07,311   creating build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,311   copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,314   copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,317   copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,319   copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,324   copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,327   copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,329   copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,333   copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,335   copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,338   copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,341   copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,344   copying htslib/htslib/cram.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,347   copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,349   copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,352   copying htslib/htslib/hts.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,356   copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,359   copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,361   copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,364   copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,367   copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,370   copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,373   copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,377   copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,379   copying htslib/htslib/sam.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,385   copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,388   copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,390   copying htslib/htslib/khash.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,393   copying htslib/htslib/klist.h -> build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib
2021-11-16T14:45:07,401   running build_ext
2021-11-16T14:45:07,469   skipping 'pysam/libchtslib.c' Cython extension (up-to-date)
2021-11-16T14:45:07,470   skipping 'pysam/libcsamtools.c' Cython extension (up-to-date)
2021-11-16T14:45:07,471   skipping 'pysam/libcbcftools.c' Cython extension (up-to-date)
2021-11-16T14:45:07,472   skipping 'pysam/libcutils.c' Cython extension (up-to-date)
2021-11-16T14:45:07,472   skipping 'pysam/libcalignmentfile.c' Cython extension (up-to-date)
2021-11-16T14:45:07,473   skipping 'pysam/libcsamfile.c' Cython extension (up-to-date)
2021-11-16T14:45:07,474   skipping 'pysam/libcalignedsegment.c' Cython extension (up-to-date)
2021-11-16T14:45:07,474   skipping 'pysam/libctabix.c' Cython extension (up-to-date)
2021-11-16T14:45:07,475   skipping 'pysam/libcfaidx.c' Cython extension (up-to-date)
2021-11-16T14:45:07,475   skipping 'pysam/libcbcf.c' Cython extension (up-to-date)
2021-11-16T14:45:07,476   skipping 'pysam/libcbgzf.c' Cython extension (up-to-date)
2021-11-16T14:45:07,477   skipping 'pysam/libctabixproxies.c' Cython extension (up-to-date)
2021-11-16T14:45:07,477   skipping 'pysam/libcvcf.c' Cython extension (up-to-date)
2021-11-16T14:45:07,478   creating htslib/config_vars.h for 'pysam.libchtslib' extension
2021-11-16T14:45:07,479   building 'pysam.libchtslib' extension
2021-11-16T14:45:07,481   creating build/temp.linux-armv7l-3.9
2021-11-16T14:45:07,481   creating build/temp.linux-armv7l-3.9/htslib
2021-11-16T14:45:07,482   creating build/temp.linux-armv7l-3.9/htslib/cram
2021-11-16T14:45:07,484   creating build/temp.linux-armv7l-3.9/htslib/htscodecs
2021-11-16T14:45:07,484   creating build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs
2021-11-16T14:45:07,486   creating build/temp.linux-armv7l-3.9/pysam
2021-11-16T14:45:07,487   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/bcf_sr_sort.c -o build/temp.linux-armv7l-3.9/htslib/bcf_sr_sort.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:09,638   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/bgzf.c -o build/temp.linux-armv7l-3.9/htslib/bgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:12,530   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/cram_codecs.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_codecs.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:17,318   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/cram_decode.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_decode.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:23,041   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/cram_encode.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_encode.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:29,107   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/cram_external.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_external.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:29,672   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/cram_index.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_index.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:30,866   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/cram_io.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_io.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:37,312   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/cram_stats.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_stats.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:37,995   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/mFILE.c -o build/temp.linux-armv7l-3.9/htslib/cram/mFILE.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:38,601   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/open_trace_file.c -o build/temp.linux-armv7l-3.9/htslib/cram/open_trace_file.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:39,149   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/pooled_alloc.c -o build/temp.linux-armv7l-3.9/htslib/cram/pooled_alloc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:39,361   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/cram/string_alloc.c -o build/temp.linux-armv7l-3.9/htslib/cram/string_alloc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:39,583   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/errmod.c -o build/temp.linux-armv7l-3.9/htslib/errmod.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:40,216   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/faidx.c -o build/temp.linux-armv7l-3.9/htslib/faidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:41,896   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/header.c -o build/temp.linux-armv7l-3.9/htslib/header.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:45,703   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hfile.c -o build/temp.linux-armv7l-3.9/htslib/hfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:47,222   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hfile_gcs.c -o build/temp.linux-armv7l-3.9/htslib/hfile_gcs.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:47,748   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hfile_libcurl.c -o build/temp.linux-armv7l-3.9/htslib/hfile_libcurl.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:49,971   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hfile_s3.c -o build/temp.linux-armv7l-3.9/htslib/hfile_s3.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:52,354   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hfile_s3_write.c -o build/temp.linux-armv7l-3.9/htslib/hfile_s3_write.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:53,625   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hts.c -o build/temp.linux-armv7l-3.9/htslib/hts.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:45:58,657   htslib/hts.c: In function ‘hts_hopen’:
2021-11-16T14:45:58,658   htslib/hts.c:1331:31: warning: ‘%s’ directive output between 503 and 2147483645 bytes may cause result to exceed ‘INT_MAX’ [-Wformat-truncation=]
2021-11-16T14:45:58,658    1331 |     snprintf(fn2, fn2_len, "%s%s", prefix, fn);
2021-11-16T14:45:58,658         |                               ^~
2021-11-16T14:45:58,658   In file included from /usr/include/stdio.h:867,
2021-11-16T14:45:58,658                    from htslib/hts.c:30:
2021-11-16T14:45:58,658   /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 513 and 2147483655 bytes into a destination of size 2147483655
2021-11-16T14:45:58,659      67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
2021-11-16T14:45:58,659         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-11-16T14:45:58,659      68 |        __bos (__s), __fmt, __va_arg_pack ());
2021-11-16T14:45:58,659         |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-11-16T14:46:00,847   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hts_expr.c -o build/temp.linux-armv7l-3.9/htslib/hts_expr.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:02,011   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/hts_os.c -o build/temp.linux-armv7l-3.9/htslib/hts_os.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:02,148   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/arith_dynamic.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/arith_dynamic.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:04,885   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/fqzcomp_qual.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/fqzcomp_qual.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:08,404   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/htscodecs.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/htscodecs.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:08,497   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/pack.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/pack.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:09,205   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/rANS_static.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/rANS_static.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:11,100   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/rANS_static4x16pr.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/rANS_static4x16pr.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:14,591   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/rle.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/rle.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:15,046   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/htscodecs/htscodecs/tokenise_name3.c -o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/tokenise_name3.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:17,252   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/kfunc.c -o build/temp.linux-armv7l-3.9/htslib/kfunc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:17,715   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/kstring.c -o build/temp.linux-armv7l-3.9/htslib/kstring.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:18,505   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/md5.c -o build/temp.linux-armv7l-3.9/htslib/md5.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:19,115   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/multipart.c -o build/temp.linux-armv7l-3.9/htslib/multipart.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:19,667   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/probaln.c -o build/temp.linux-armv7l-3.9/htslib/probaln.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:20,363   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/realn.c -o build/temp.linux-armv7l-3.9/htslib/realn.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:21,222   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/regidx.c -o build/temp.linux-armv7l-3.9/htslib/regidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:22,553   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/region.c -o build/temp.linux-armv7l-3.9/htslib/region.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:23,154   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/sam.c -o build/temp.linux-armv7l-3.9/htslib/sam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:34,772   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/synced_bcf_reader.c -o build/temp.linux-armv7l-3.9/htslib/synced_bcf_reader.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:37,082   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/tbx.c -o build/temp.linux-armv7l-3.9/htslib/tbx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:37,877   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/textutils.c -o build/temp.linux-armv7l-3.9/htslib/textutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:38,766   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/thread_pool.c -o build/temp.linux-armv7l-3.9/htslib/thread_pool.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:39,630   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/vcf.c -o build/temp.linux-armv7l-3.9/htslib/vcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:51,456   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/vcf_sweep.c -o build/temp.linux-armv7l-3.9/htslib/vcf_sweep.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:51,839   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c htslib/vcfutils.c -o build/temp.linux-armv7l-3.9/htslib/vcfutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:54,666   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/htslib_util.c -o build/temp.linux-armv7l-3.9/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:46:54,991   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libchtslib.c -o build/temp.linux-armv7l-3.9/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:08,142   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/htslib/bcf_sr_sort.o build/temp.linux-armv7l-3.9/htslib/bgzf.o build/temp.linux-armv7l-3.9/htslib/cram/cram_codecs.o build/temp.linux-armv7l-3.9/htslib/cram/cram_decode.o build/temp.linux-armv7l-3.9/htslib/cram/cram_encode.o build/temp.linux-armv7l-3.9/htslib/cram/cram_external.o build/temp.linux-armv7l-3.9/htslib/cram/cram_index.o build/temp.linux-armv7l-3.9/htslib/cram/cram_io.o build/temp.linux-armv7l-3.9/htslib/cram/cram_stats.o build/temp.linux-armv7l-3.9/htslib/cram/mFILE.o build/temp.linux-armv7l-3.9/htslib/cram/open_trace_file.o build/temp.linux-armv7l-3.9/htslib/cram/pooled_alloc.o build/temp.linux-armv7l-3.9/htslib/cram/string_alloc.o build/temp.linux-armv7l-3.9/htslib/errmod.o build/temp.linux-armv7l-3.9/htslib/faidx.o build/temp.linux-armv7l-3.9/htslib/header.o build/temp.linux-armv7l-3.9/htslib/hfile.o build/temp.linux-armv7l-3.9/htslib/hfile_gcs.o build/temp.linux-armv7l-3.9/htslib/hfile_libcurl.o build/temp.linux-armv7l-3.9/htslib/hfile_s3.o build/temp.linux-armv7l-3.9/htslib/hfile_s3_write.o build/temp.linux-armv7l-3.9/htslib/hts.o build/temp.linux-armv7l-3.9/htslib/hts_expr.o build/temp.linux-armv7l-3.9/htslib/hts_os.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/arith_dynamic.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/fqzcomp_qual.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/htscodecs.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/pack.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/rANS_static.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/rANS_static4x16pr.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/rle.o build/temp.linux-armv7l-3.9/htslib/htscodecs/htscodecs/tokenise_name3.o build/temp.linux-armv7l-3.9/htslib/kfunc.o build/temp.linux-armv7l-3.9/htslib/kstring.o build/temp.linux-armv7l-3.9/htslib/md5.o build/temp.linux-armv7l-3.9/htslib/multipart.o build/temp.linux-armv7l-3.9/htslib/probaln.o build/temp.linux-armv7l-3.9/htslib/realn.o build/temp.linux-armv7l-3.9/htslib/regidx.o build/temp.linux-armv7l-3.9/htslib/region.o build/temp.linux-armv7l-3.9/htslib/sam.o build/temp.linux-armv7l-3.9/htslib/synced_bcf_reader.o build/temp.linux-armv7l-3.9/htslib/tbx.o build/temp.linux-armv7l-3.9/htslib/textutils.o build/temp.linux-armv7l-3.9/htslib/thread_pool.o build/temp.linux-armv7l-3.9/htslib/vcf.o build/temp.linux-armv7l-3.9/htslib/vcf_sweep.o build/temp.linux-armv7l-3.9/htslib/vcfutils.o build/temp.linux-armv7l-3.9/pysam/htslib_util.o build/temp.linux-armv7l-3.9/pysam/libchtslib.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-3.9/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:47:08,958   creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension
2021-11-16T14:47:08,960   building 'pysam.libcsamtools' extension
2021-11-16T14:47:08,962   creating build/temp.linux-armv7l-3.9/samtools
2021-11-16T14:47:08,965   creating build/temp.linux-armv7l-3.9/samtools/lz4
2021-11-16T14:47:08,966   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-3.9/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:09,802   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:13,547   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:13,988   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:15,550   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:18,060   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:20,169   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:20,894   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:22,691   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:22,951   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:23,728   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:24,042   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:25,286   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:25,560   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:26,508   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:26,927   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:27,853   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:31,378   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:32,409   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:33,304   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:33,537   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:36,468   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:36,848   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:37,625   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:38,926   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:40,023   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:40,807   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:48,639   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:49,849   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:50,715   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:52,750   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:53,257   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:54,176   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:55,768   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:56,832   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:57,482   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:58,137   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:47:58,745   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-3.9/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:04,108   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:05,355   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:08,049   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:08,391   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:08,701   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:10,864   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:11,617   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-3.9/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:11,858   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:16,424   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:17,022   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-3.9/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:17,513   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcsamtools.o build/temp.linux-armv7l-3.9/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam2bcf.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-3.9/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-3.9/samtools/coverage.c.pysam.o build/temp.linux-armv7l-3.9/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-3.9/samtools/dict.c.pysam.o build/temp.linux-armv7l-3.9/samtools/faidx.c.pysam.o build/temp.linux-armv7l-3.9/samtools/lz4/lz4.o build/temp.linux-armv7l-3.9/samtools/padding.c.pysam.o build/temp.linux-armv7l-3.9/samtools/phase.c.pysam.o build/temp.linux-armv7l-3.9/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-3.9/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-3.9/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-3.9/samtools/sample.c.pysam.o build/temp.linux-armv7l-3.9/samtools/samtools.pysam.o build/temp.linux-armv7l-3.9/samtools/stats.c.pysam.o build/temp.linux-armv7l-3.9/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-3.9/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:48:18,008   building 'pysam.libcbcftools' extension
2021-11-16T14:48:18,010   creating build/temp.linux-armv7l-3.9/bcftools
2021-11-16T14:48:18,012   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:18,940   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:21,345   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:23,393   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:25,493   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:27,199   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:27,442   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:27,771   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:28,444   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:28,695   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:30,876   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:36,114   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:44,014   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:44,294   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:44,833   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:45,357   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:57,136   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:57,695   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:58,280   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:58,720   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:48:59,084   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:02,449   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:04,558   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:05,499   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:06,959   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:08,206   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:11,031   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:11,466   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:11,878   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:12,282   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:12,641   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:20,634   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:21,802   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:24,266   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:26,235   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:28,649   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:31,829   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:33,151   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:35,965   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:36,613   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:38,282   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:40,210   bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’:
2021-11-16T14:49:40,211   bcftools/vcfmerge.c.pysam.c:749:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2021-11-16T14:49:40,211     749 |         ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t));  // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n
2021-11-16T14:49:40,211         |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-11-16T14:49:40,211   In file included from /tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib/htslib/kstring.h:30,
2021-11-16T14:49:40,211                    from /tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib/htslib/hts.h:37,
2021-11-16T14:49:40,212                    from /tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib/htslib/vcf.h:39,
2021-11-16T14:49:40,212                    from bcftools/vcfmerge.c.pysam.c:35:
2021-11-16T14:49:40,212   /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here
2021-11-16T14:49:40,212     542 | extern void *calloc (size_t __nmemb, size_t __size)
2021-11-16T14:49:40,212         |              ^~~~~~
2021-11-16T14:49:47,944   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:55,382   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:55,673   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:56,805   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:49:59,143   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:00,407   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:01,171   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:05,227   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:07,054   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:07,495   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-3.9/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:07,838   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-3.9/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:08,687   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/bcftools.pysam.o build/temp.linux-armv7l-3.9/bcftools/bin.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/cols.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/convert.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/csq.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/dist.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/em.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/filter.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/main.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-3.9/bcftools/version.c.pysam.o build/temp.linux-armv7l-3.9/pysam/libcbcftools.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:50:09,268   building 'pysam.libcutils' extension
2021-11-16T14:50:09,268   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcutils.c -o build/temp.linux-armv7l-3.9/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:20,157   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/pysam_util.c -o build/temp.linux-armv7l-3.9/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:50:20,357   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcutils.o build/temp.linux-armv7l-3.9/pysam/pysam_util.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcsamtools.cpython-39-arm-linux-gnueabihf -lcbcftools.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:50:20,567   building 'pysam.libcalignmentfile' extension
2021-11-16T14:50:20,567   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-3.9/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:51:02,211   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcalignmentfile.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:51:02,522   building 'pysam.libcsamfile' extension
2021-11-16T14:51:02,522   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-3.9/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:51:04,605   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcsamfile.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:51:04,770   building 'pysam.libcalignedsegment' extension
2021-11-16T14:51:04,771   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-3.9/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:51:57,151   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcalignedsegment.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:51:57,520   building 'pysam.libctabix' extension
2021-11-16T14:51:57,521   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libctabix.c -o build/temp.linux-armv7l-3.9/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:52:17,175   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libctabix.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:52:17,413   building 'pysam.libcfaidx' extension
2021-11-16T14:52:17,414   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-3.9/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:52:29,126   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcfaidx.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:52:29,341   building 'pysam.libcbcf' extension
2021-11-16T14:52:29,341   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcbcf.c -o build/temp.linux-armv7l-3.9/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:53:43,357   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcbcf.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:53:43,816   building 'pysam.libcbgzf' extension
2021-11-16T14:53:43,816   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-3.9/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:53:48,923   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcbgzf.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:53:49,111   building 'pysam.libctabixproxies' extension
2021-11-16T14:53:49,111   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-3.9/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:54:07,240   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libctabixproxies.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:54:07,463   building 'pysam.libcvcf' extension
2021-11-16T14:54:07,464   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/htslib -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/samtools/lz4 -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/bcftools -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -I/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -I/usr/include/python3.9 -c pysam/libcvcf.c -o build/temp.linux-armv7l-3.9/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
2021-11-16T14:54:50,741   pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’:
2021-11-16T14:54:50,757   pysam/libcvcf.c:25149:16: warning: ‘__pyx_v_qual’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-11-16T14:54:50,757   25149 |   __pyx_t_12 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 873, __pyx_L1_error)
2021-11-16T14:54:50,758         |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-11-16T14:55:09,567   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pysam/libcvcf.o -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/pysam -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959 -L/tmp/pip-wheel-iqoqmjpw/pysam_572abb331df64ebeaa43bf4fe06e9959/build/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -Lbuild/lib.linux-armv7l-3.9/pysam -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-3.9/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN
2021-11-16T14:55:09,925   installing to build/bdist.linux-armv7l/wheel
2021-11-16T14:55:09,925   running install
2021-11-16T14:55:09,926   running install_lib
2021-11-16T14:55:09,930   creating build/bdist.linux-armv7l
2021-11-16T14:55:09,931   creating build/bdist.linux-armv7l/wheel
2021-11-16T14:55:09,933   creating build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:09,934   copying build/lib.linux-armv7l-3.9/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:09,936   copying build/lib.linux-armv7l-3.9/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:09,938   copying build/lib.linux-armv7l-3.9/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:09,940   copying build/lib.linux-armv7l-3.9/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:09,942   copying build/lib.linux-armv7l-3.9/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:09,972   copying build/lib.linux-armv7l-3.9/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,004   copying build/lib.linux-armv7l-3.9/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,005   copying build/lib.linux-armv7l-3.9/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,007   copying build/lib.linux-armv7l-3.9/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,009   copying build/lib.linux-armv7l-3.9/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,018   copying build/lib.linux-armv7l-3.9/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,082   copying build/lib.linux-armv7l-3.9/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,084   copying build/lib.linux-armv7l-3.9/pysam/cbcftools_util.h -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,086   copying build/lib.linux-armv7l-3.9/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,176   copying build/lib.linux-armv7l-3.9/pysam/version.py -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,178   copying build/lib.linux-armv7l-3.9/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,180   copying build/lib.linux-armv7l-3.9/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,182   copying build/lib.linux-armv7l-3.9/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,187   copying build/lib.linux-armv7l-3.9/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,287   copying build/lib.linux-armv7l-3.9/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,290   creating build/bdist.linux-armv7l/wheel/pysam/include
2021-11-16T14:55:10,292   creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,293   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,295   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,297   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,299   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,301   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,304   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,306   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,308   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,311   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,315   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,317   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,319   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,321   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,324   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,326   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,328   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,330   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,334   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,336   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,338   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,340   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,343   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,345   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,348   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,350   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,353   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,355   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,357   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,359   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,362   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,364   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,366   copying build/lib.linux-armv7l-3.9/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools
2021-11-16T14:55:10,369   creating build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,369   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,372   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,374   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,376   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,378   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,380   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,382   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,384   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,386   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,388   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,390   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,392   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,394   copying build/lib.linux-armv7l-3.9/pysam/include/samtools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools
2021-11-16T14:55:10,397   copying build/lib.linux-armv7l-3.9/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/pysam/include
2021-11-16T14:55:10,399   creating build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,400   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,403   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,405   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,407   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,410   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,413   creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,414   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,417   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,419   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,422   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,426   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,428   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,431   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,433   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,435   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,438   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,440   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,443   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,446   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,448   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,451   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,455   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,457   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,460   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,462   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,465   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,467   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,470   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,473   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,475   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,480   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,482   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,484   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,487   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib
2021-11-16T14:55:10,489   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,492   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,494   copying build/lib.linux-armv7l-3.9/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib
2021-11-16T14:55:10,497   copying build/lib.linux-armv7l-3.9/pysam/csamtools_util.h -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,499   copying build/lib.linux-armv7l-3.9/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,518   copying build/lib.linux-armv7l-3.9/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,520   copying build/lib.linux-armv7l-3.9/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,585   copying build/lib.linux-armv7l-3.9/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,586   copying build/lib.linux-armv7l-3.9/pysam/pysam_stream.h -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,588   copying build/lib.linux-armv7l-3.9/pysam/pysam_util.h -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,590   copying build/lib.linux-armv7l-3.9/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,591   copying build/lib.linux-armv7l-3.9/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,678   copying build/lib.linux-armv7l-3.9/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,682   copying build/lib.linux-armv7l-3.9/pysam/config.py -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,684   copying build/lib.linux-armv7l-3.9/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,742   copying build/lib.linux-armv7l-3.9/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,744   copying build/lib.linux-armv7l-3.9/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,745   copying build/lib.linux-armv7l-3.9/pysam/utils.py -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,747   copying build/lib.linux-armv7l-3.9/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,860   copying build/lib.linux-armv7l-3.9/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,881   copying build/lib.linux-armv7l-3.9/pysam/version.h -> build/bdist.linux-armv7l/wheel/pysam
2021-11-16T14:55:10,883   running install_egg_info
2021-11-16T14:55:10,901   running egg_info
2021-11-16T14:55:10,902   writing pysam.egg-info/PKG-INFO
2021-11-16T14:55:10,904   writing dependency_links to pysam.egg-info/dependency_links.txt
2021-11-16T14:55:10,906   writing top-level names to pysam.egg-info/top_level.txt
2021-11-16T14:55:10,951   reading manifest file 'pysam.egg-info/SOURCES.txt'
2021-11-16T14:55:10,985   reading manifest template 'MANIFEST.in'
2021-11-16T14:55:10,987   warning: no files found matching 'KNOWN_BUGS'
2021-11-16T14:55:10,987   warning: no files found matching 'THANKS'
2021-11-16T14:55:10,996   no previously-included directories found matching 'tests/'
2021-11-16T14:55:11,127   adding license file 'COPYING'
2021-11-16T14:55:11,127   adding license file 'AUTHORS'
2021-11-16T14:55:11,154   writing manifest file 'pysam.egg-info/SOURCES.txt'
2021-11-16T14:55:11,156   Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/pysam-0.18.0-py3.9.egg-info
2021-11-16T14:55:11,168   running install_scripts
2021-11-16T14:55:11,247   adding license file "COPYING" (matched pattern "COPYING*")
2021-11-16T14:55:11,248   adding license file "AUTHORS" (matched pattern "AUTHORS*")
2021-11-16T14:55:11,254   creating build/bdist.linux-armv7l/wheel/pysam-0.18.0.dist-info/WHEEL
2021-11-16T14:55:11,256   creating '/tmp/pip-wheel-vnxem405/pysam-0.18.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-11-16T14:55:11,260   adding 'pysam/Pileup.py'
2021-11-16T14:55:11,262   adding 'pysam/__init__.py'
2021-11-16T14:55:11,263   adding 'pysam/bcftools.py'
2021-11-16T14:55:11,265   adding 'pysam/cbcftools_util.h'
2021-11-16T14:55:11,266   adding 'pysam/config.py'
2021-11-16T14:55:11,267   adding 'pysam/csamtools_util.h'
2021-11-16T14:55:11,268   adding 'pysam/htslib_util.h'
2021-11-16T14:55:11,934   adding 'pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:11,963   adding 'pysam/libcalignedsegment.pxd'
2021-11-16T14:55:12,457   adding 'pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:12,479   adding 'pysam/libcalignmentfile.pxd'
2021-11-16T14:55:13,280   adding 'pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:13,320   adding 'pysam/libcbcf.pxd'
2021-11-16T14:55:14,270   adding 'pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:14,304   adding 'pysam/libcbcftools.pxd'
2021-11-16T14:55:14,378   adding 'pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:14,546   adding 'pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:14,554   adding 'pysam/libcfaidx.pxd'
2021-11-16T14:55:15,742   adding 'pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:15,798   adding 'pysam/libchtslib.pxd'
2021-11-16T14:55:15,825   adding 'pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:15,827   adding 'pysam/libcsamfile.pxd'
2021-11-16T14:55:16,469   adding 'pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:16,492   adding 'pysam/libcsamtools.pxd'
2021-11-16T14:55:16,735   adding 'pysam/libctabix.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:16,746   adding 'pysam/libctabix.pxd'
2021-11-16T14:55:17,001   adding 'pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:17,013   adding 'pysam/libctabixproxies.pxd'
2021-11-16T14:55:17,155   adding 'pysam/libcutils.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:17,162   adding 'pysam/libcutils.pxd'
2021-11-16T14:55:17,719   adding 'pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so'
2021-11-16T14:55:17,742   adding 'pysam/libcvcf.pxd'
2021-11-16T14:55:17,744   adding 'pysam/pysam_stream.h'
2021-11-16T14:55:17,745   adding 'pysam/pysam_util.h'
2021-11-16T14:55:17,746   adding 'pysam/samtools.py'
2021-11-16T14:55:17,748   adding 'pysam/utils.py'
2021-11-16T14:55:17,749   adding 'pysam/version.h'
2021-11-16T14:55:17,750   adding 'pysam/version.py'
2021-11-16T14:55:17,752   adding 'pysam/include/__init__.py'
2021-11-16T14:55:17,754   adding 'pysam/include/bcftools/HMM.h'
2021-11-16T14:55:17,756   adding 'pysam/include/bcftools/abuf.h'
2021-11-16T14:55:17,757   adding 'pysam/include/bcftools/bam2bcf.h'
2021-11-16T14:55:17,758   adding 'pysam/include/bcftools/bam_sample.h'
2021-11-16T14:55:17,760   adding 'pysam/include/bcftools/bcftools.h'
2021-11-16T14:55:17,761   adding 'pysam/include/bcftools/bcftools.pysam.h'
2021-11-16T14:55:17,762   adding 'pysam/include/bcftools/bin.h'
2021-11-16T14:55:17,764   adding 'pysam/include/bcftools/call.h'
2021-11-16T14:55:17,765   adding 'pysam/include/bcftools/cols.h'
2021-11-16T14:55:17,766   adding 'pysam/include/bcftools/config.h'
2021-11-16T14:55:17,768   adding 'pysam/include/bcftools/convert.h'
2021-11-16T14:55:17,769   adding 'pysam/include/bcftools/dist.h'
2021-11-16T14:55:17,770   adding 'pysam/include/bcftools/extsort.h'
2021-11-16T14:55:17,772   adding 'pysam/include/bcftools/filter.h'
2021-11-16T14:55:17,773   adding 'pysam/include/bcftools/gvcf.h'
2021-11-16T14:55:17,774   adding 'pysam/include/bcftools/hclust.h'
2021-11-16T14:55:17,776   adding 'pysam/include/bcftools/hex.h'
2021-11-16T14:55:17,777   adding 'pysam/include/bcftools/khash_str2str.h'
2021-11-16T14:55:17,779   adding 'pysam/include/bcftools/kheap.h'
2021-11-16T14:55:17,780   adding 'pysam/include/bcftools/kmin.h'
2021-11-16T14:55:17,785   adding 'pysam/include/bcftools/mw.h'
2021-11-16T14:55:17,787   adding 'pysam/include/bcftools/ploidy.h'
2021-11-16T14:55:17,789   adding 'pysam/include/bcftools/prob1.h'
2021-11-16T14:55:17,791   adding 'pysam/include/bcftools/rbuf.h'
2021-11-16T14:55:17,792   adding 'pysam/include/bcftools/regidx.h'
2021-11-16T14:55:17,794   adding 'pysam/include/bcftools/smpl_ilist.h'
2021-11-16T14:55:17,795   adding 'pysam/include/bcftools/str_finder.h'
2021-11-16T14:55:17,797   adding 'pysam/include/bcftools/tsv2vcf.h'
2021-11-16T14:55:17,800   adding 'pysam/include/bcftools/utlist.h'
2021-11-16T14:55:17,804   adding 'pysam/include/bcftools/variantkey.h'
2021-11-16T14:55:17,805   adding 'pysam/include/bcftools/vcfbuf.h'
2021-11-16T14:55:17,807   adding 'pysam/include/bcftools/vcmp.h'
2021-11-16T14:55:17,809   adding 'pysam/include/htslib/bcf_sr_sort.h'
2021-11-16T14:55:17,810   adding 'pysam/include/htslib/config.h'
2021-11-16T14:55:17,812   adding 'pysam/include/htslib/header.h'
2021-11-16T14:55:17,814   adding 'pysam/include/htslib/hfile_internal.h'
2021-11-16T14:55:17,816   adding 'pysam/include/htslib/hts_internal.h'
2021-11-16T14:55:17,817   adding 'pysam/include/htslib/sam_internal.h'
2021-11-16T14:55:17,820   adding 'pysam/include/htslib/textutils_internal.h'
2021-11-16T14:55:17,821   adding 'pysam/include/htslib/thread_pool_internal.h'
2021-11-16T14:55:17,825   adding 'pysam/include/htslib/htslib/bgzf.h'
2021-11-16T14:55:17,827   adding 'pysam/include/htslib/htslib/cram.h'
2021-11-16T14:55:17,830   adding 'pysam/include/htslib/htslib/faidx.h'
2021-11-16T14:55:17,832   adding 'pysam/include/htslib/htslib/hfile.h'
2021-11-16T14:55:17,840   adding 'pysam/include/htslib/htslib/hts.h'
2021-11-16T14:55:17,842   adding 'pysam/include/htslib/htslib/hts_defs.h'
2021-11-16T14:55:17,844   adding 'pysam/include/htslib/htslib/hts_endian.h'
2021-11-16T14:55:17,845   adding 'pysam/include/htslib/htslib/hts_expr.h'
2021-11-16T14:55:17,847   adding 'pysam/include/htslib/htslib/hts_log.h'
2021-11-16T14:55:17,848   adding 'pysam/include/htslib/htslib/hts_os.h'
2021-11-16T14:55:17,850   adding 'pysam/include/htslib/htslib/kbitset.h'
2021-11-16T14:55:17,851   adding 'pysam/include/htslib/htslib/kfunc.h'
2021-11-16T14:55:17,854   adding 'pysam/include/htslib/htslib/khash.h'
2021-11-16T14:55:17,855   adding 'pysam/include/htslib/htslib/khash_str2int.h'
2021-11-16T14:55:17,857   adding 'pysam/include/htslib/htslib/klist.h'
2021-11-16T14:55:17,858   adding 'pysam/include/htslib/htslib/knetfile.h'
2021-11-16T14:55:17,860   adding 'pysam/include/htslib/htslib/kroundup.h'
2021-11-16T14:55:17,861   adding 'pysam/include/htslib/htslib/kseq.h'
2021-11-16T14:55:17,864   adding 'pysam/include/htslib/htslib/ksort.h'
2021-11-16T14:55:17,866   adding 'pysam/include/htslib/htslib/kstring.h'
2021-11-16T14:55:17,868   adding 'pysam/include/htslib/htslib/regidx.h'
2021-11-16T14:55:17,879   adding 'pysam/include/htslib/htslib/sam.h'
2021-11-16T14:55:17,883   adding 'pysam/include/htslib/htslib/synced_bcf_reader.h'
2021-11-16T14:55:17,884   adding 'pysam/include/htslib/htslib/tbx.h'
2021-11-16T14:55:17,886   adding 'pysam/include/htslib/htslib/thread_pool.h'
2021-11-16T14:55:17,895   adding 'pysam/include/htslib/htslib/vcf.h'
2021-11-16T14:55:17,896   adding 'pysam/include/htslib/htslib/vcf_sweep.h'
2021-11-16T14:55:17,898   adding 'pysam/include/htslib/htslib/vcfutils.h'
2021-11-16T14:55:17,900   adding 'pysam/include/samtools/bam.h'
2021-11-16T14:55:17,902   adding 'pysam/include/samtools/bam2bcf.h'
2021-11-16T14:55:17,903   adding 'pysam/include/samtools/bam_ampliconclip.h'
2021-11-16T14:55:17,904   adding 'pysam/include/samtools/bam_lpileup.h'
2021-11-16T14:55:17,905   adding 'pysam/include/samtools/bam_plbuf.h'
2021-11-16T14:55:17,907   adding 'pysam/include/samtools/bedidx.h'
2021-11-16T14:55:17,908   adding 'pysam/include/samtools/config.h'
2021-11-16T14:55:17,909   adding 'pysam/include/samtools/sam_opts.h'
2021-11-16T14:55:17,910   adding 'pysam/include/samtools/sample.h'
2021-11-16T14:55:17,912   adding 'pysam/include/samtools/samtools.h'
2021-11-16T14:55:17,913   adding 'pysam/include/samtools/samtools.pysam.h'
2021-11-16T14:55:17,914   adding 'pysam/include/samtools/stats_isize.h'
2021-11-16T14:55:17,916   adding 'pysam/include/samtools/tmp_file.h'
2021-11-16T14:55:17,918   adding 'pysam-0.18.0.dist-info/AUTHORS'
2021-11-16T14:55:17,919   adding 'pysam-0.18.0.dist-info/COPYING'
2021-11-16T14:55:17,920   adding 'pysam-0.18.0.dist-info/METADATA'
2021-11-16T14:55:17,921   adding 'pysam-0.18.0.dist-info/WHEEL'
2021-11-16T14:55:17,922   adding 'pysam-0.18.0.dist-info/top_level.txt'
2021-11-16T14:55:17,924   adding 'pysam-0.18.0.dist-info/RECORD'
2021-11-16T14:55:18,078   removing build/bdist.linux-armv7l/wheel
2021-11-16T14:55:18,214   Building wheel for pysam (setup.py): finished with status 'done'
2021-11-16T14:55:18,362   Created wheel for pysam: filename=pysam-0.18.0-cp39-cp39-linux_armv7l.whl size=11553047 sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae
2021-11-16T14:55:18,362   Stored in directory: /tmp/pip-ephem-wheel-cache-c_z95xpi/wheels/5f/09/f5/ad2e65de4e9088acca40ce15ad0070998fb72873f5f04ac22a
2021-11-16T14:55:18,380 Successfully built pysam
2021-11-16T14:55:18,765 Removed build tracker: '/tmp/pip-req-tracker-dljpym7u'