2021-11-17T20:27:25,562 Created temporary directory: /tmp/pip-ephem-wheel-cache-9k7xc8sb
2021-11-17T20:27:25,568 Created temporary directory: /tmp/pip-req-tracker-1_r832be
2021-11-17T20:27:25,569 Initialized build tracking at /tmp/pip-req-tracker-1_r832be
2021-11-17T20:27:25,569 Created build tracker: /tmp/pip-req-tracker-1_r832be
2021-11-17T20:27:25,570 Entered build tracker: /tmp/pip-req-tracker-1_r832be
2021-11-17T20:27:25,571 Created temporary directory: /tmp/pip-wheel-zuwolc3b
2021-11-17T20:27:25,639 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-17T20:27:25,643 2 location(s) to search for versions of novartis-pisces:
2021-11-17T20:27:25,643 * https://pypi.org/simple/novartis-pisces/
2021-11-17T20:27:25,643 * https://www.piwheels.org/simple/novartis-pisces/
2021-11-17T20:27:25,644 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2021-11-17T20:27:25,646 Getting page https://pypi.org/simple/novartis-pisces/
2021-11-17T20:27:25,650 Found index url https://pypi.org/simple
2021-11-17T20:27:25,988   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2021-11-17T20:27:25,990   Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2
2021-11-17T20:27:25,991   Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3
2021-11-17T20:27:25,992   Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1
2021-11-17T20:27:25,993   Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4
2021-11-17T20:27:25,994   Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2
2021-11-17T20:27:25,995   Found link https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.3
2021-11-17T20:27:25,995   Found link https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.4
2021-11-17T20:27:25,996   Found link https://files.pythonhosted.org/packages/f9/86/6109b1944321f01860299418d02854fa363d089bf41f2c88653bdd14cdc0/novartis-pisces-0.1.5.tar.gz#sha256=5b4ceff936dafbea0c0d045a4d2e7246e1991ee120c7c7f80753a7c7d6952d6f (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5
2021-11-17T20:27:25,997 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/
2021-11-17T20:27:25,998 Getting page https://www.piwheels.org/simple/novartis-pisces/
2021-11-17T20:27:26,001 Found index url https://www.piwheels.org/simple
2021-11-17T20:27:26,231   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,232   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,233   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,233   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,234   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,234   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.2-py3-none-any.whl#sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,235   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.3-py3-none-any.whl#sha256=0df67ceec82649982fda766535f4204513e9793b6cbf2249d232a8b3356a6612 (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,235   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.4-py3-none-any.whl#sha256=9a602e2da8188d15ac02b3692617eff25353f07156d354e90e113137fa3b61bd (from https://www.piwheels.org/simple/novartis-pisces/)
2021-11-17T20:27:26,269 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2021-11-17T20:27:26,301 Collecting novartis-pisces==0.1.5
2021-11-17T20:27:26,304   Created temporary directory: /tmp/pip-unpack-4n8frss4
2021-11-17T20:27:27,086   Downloading novartis-pisces-0.1.5.tar.gz (18.4 MB)
2021-11-17T20:27:35,686   Added novartis-pisces==0.1.5 from https://files.pythonhosted.org/packages/f9/86/6109b1944321f01860299418d02854fa363d089bf41f2c88653bdd14cdc0/novartis-pisces-0.1.5.tar.gz#sha256=5b4ceff936dafbea0c0d045a4d2e7246e1991ee120c7c7f80753a7c7d6952d6f to build tracker '/tmp/pip-req-tracker-1_r832be'
2021-11-17T20:27:35,689     Running setup.py (path:/tmp/pip-wheel-zuwolc3b/novartis-pisces_ac39770e057e4b1fb281d9b159264283/setup.py) egg_info for package novartis-pisces
2021-11-17T20:27:35,690     Created temporary directory: /tmp/pip-pip-egg-info-af_ke440
2021-11-17T20:27:35,691     Running command python setup.py egg_info
2021-11-17T20:27:41,006     DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-11-17T20:27:44,089     running egg_info
2021-11-17T20:27:44,096     creating /tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info
2021-11-17T20:27:44,098     writing top-level names to /tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/top_level.txt
2021-11-17T20:27:44,101     writing /tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/PKG-INFO
2021-11-17T20:27:44,112     writing dependency_links to /tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/dependency_links.txt
2021-11-17T20:27:44,115     writing requirements to /tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/requires.txt
2021-11-17T20:27:44,117     writing entry points to /tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/entry_points.txt
2021-11-17T20:27:44,121     writing manifest file '/tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/SOURCES.txt'
2021-11-17T20:27:44,506     reading manifest file '/tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/SOURCES.txt'
2021-11-17T20:27:44,511     reading manifest template 'MANIFEST.in'
2021-11-17T20:27:44,536     writing manifest file '/tmp/pip-pip-egg-info-af_ke440/novartis_pisces.egg-info/SOURCES.txt'
2021-11-17T20:27:44,694   Source in /tmp/pip-wheel-zuwolc3b/novartis-pisces_ac39770e057e4b1fb281d9b159264283 has version 0.1.5, which satisfies requirement novartis-pisces==0.1.5 from https://files.pythonhosted.org/packages/f9/86/6109b1944321f01860299418d02854fa363d089bf41f2c88653bdd14cdc0/novartis-pisces-0.1.5.tar.gz#sha256=5b4ceff936dafbea0c0d045a4d2e7246e1991ee120c7c7f80753a7c7d6952d6f
2021-11-17T20:27:44,696   Removed novartis-pisces==0.1.5 from https://files.pythonhosted.org/packages/f9/86/6109b1944321f01860299418d02854fa363d089bf41f2c88653bdd14cdc0/novartis-pisces-0.1.5.tar.gz#sha256=5b4ceff936dafbea0c0d045a4d2e7246e1991ee120c7c7f80753a7c7d6952d6f from build tracker '/tmp/pip-req-tracker-1_r832be'
2021-11-17T20:27:44,704 Created temporary directory: /tmp/pip-unpack-_xjcddnm
2021-11-17T20:27:44,705 Building wheels for collected packages: novartis-pisces
2021-11-17T20:27:44,715   Created temporary directory: /tmp/pip-wheel-u5uq5ira
2021-11-17T20:27:44,716   Building wheel for novartis-pisces (setup.py): started
2021-11-17T20:27:44,717   Destination directory: /tmp/pip-wheel-u5uq5ira
2021-11-17T20:27:44,717   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zuwolc3b/novartis-pisces_ac39770e057e4b1fb281d9b159264283/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zuwolc3b/novartis-pisces_ac39770e057e4b1fb281d9b159264283/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u5uq5ira
2021-11-17T20:27:47,764   running bdist_wheel
2021-11-17T20:27:47,773   running build
2021-11-17T20:27:47,774   running build_py
2021-11-17T20:27:48,095   creating build
2021-11-17T20:27:48,096   creating build/lib
2021-11-17T20:27:48,098   creating build/lib/pisces
2021-11-17T20:27:48,101   copying pisces/index.py -> build/lib/pisces
2021-11-17T20:27:48,107   copying pisces/cli.py -> build/lib/pisces
2021-11-17T20:27:48,113   copying pisces/qc.py -> build/lib/pisces
2021-11-17T20:27:48,119   copying pisces/fastq.py -> build/lib/pisces
2021-11-17T20:27:48,126   copying pisces/__init__.py -> build/lib/pisces
2021-11-17T20:27:48,133   copying pisces/submit.py -> build/lib/pisces
2021-11-17T20:27:48,140   copying pisces/run.py -> build/lib/pisces
2021-11-17T20:27:48,145   running egg_info
2021-11-17T20:27:48,156   writing entry points to novartis_pisces.egg-info/entry_points.txt
2021-11-17T20:27:48,158   writing requirements to novartis_pisces.egg-info/requires.txt
2021-11-17T20:27:48,161   writing novartis_pisces.egg-info/PKG-INFO
2021-11-17T20:27:48,165   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2021-11-17T20:27:48,167   writing top-level names to novartis_pisces.egg-info/top_level.txt
2021-11-17T20:27:48,207   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-11-17T20:27:48,244   reading manifest template 'MANIFEST.in'
2021-11-17T20:27:48,271   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2021-11-17T20:27:48,282   copying pisces/config.json -> build/lib/pisces
2021-11-17T20:27:48,286   creating build/lib/pisces/R
2021-11-17T20:27:48,288   copying pisces/R/.Rprofile -> build/lib/pisces/R
2021-11-17T20:27:48,293   copying pisces/R/.gitignore -> build/lib/pisces/R
2021-11-17T20:27:48,297   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2021-11-17T20:27:48,305   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2021-11-17T20:27:48,309   creating build/lib/pisces/R/renv
2021-11-17T20:27:48,311   copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv
2021-11-17T20:27:48,319   creating build/lib/pisces/data
2021-11-17T20:27:48,321   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2021-11-17T20:27:48,332   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2021-11-17T20:27:48,341   creating build/lib/pisces/scripts
2021-11-17T20:27:48,343   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2021-11-17T20:27:48,353   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2021-11-17T20:27:48,359   creating build/lib/pisces/tests
2021-11-17T20:27:48,361   copying pisces/tests/test_cli.py -> build/lib/pisces/tests
2021-11-17T20:27:48,372   installing to build/bdist.linux-armv7l/wheel
2021-11-17T20:27:48,372   running install
2021-11-17T20:27:48,374   running install_lib
2021-11-17T20:27:48,382   creating build/bdist.linux-armv7l
2021-11-17T20:27:48,383   creating build/bdist.linux-armv7l/wheel
2021-11-17T20:27:48,387   creating build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,389   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,396   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,405   creating build/bdist.linux-armv7l/wheel/pisces/tests
2021-11-17T20:27:48,407   copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests
2021-11-17T20:27:48,413   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,418   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,424   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,429   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,436   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2021-11-17T20:27:48,439   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-11-17T20:27:48,446   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2021-11-17T20:27:48,455   creating build/bdist.linux-armv7l/wheel/pisces/data
2021-11-17T20:27:48,458   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-11-17T20:27:48,466   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2021-11-17T20:27:48,473   creating build/bdist.linux-armv7l/wheel/pisces/R
2021-11-17T20:27:48,476   creating build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-11-17T20:27:48,479   copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv
2021-11-17T20:27:48,486   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-17T20:27:48,494   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-17T20:27:48,499   copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-17T20:27:48,503   copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R
2021-11-17T20:27:48,506   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,510   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2021-11-17T20:27:48,514   running install_egg_info
2021-11-17T20:27:48,524   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5-py3.5.egg-info
2021-11-17T20:27:48,554   running install_scripts
2021-11-17T20:27:48,645   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5.dist-info/WHEEL
2021-11-17T20:27:48,969   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2021-11-17T20:27:48,974   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.5-py3-none-any.whl size=57645 sha256=7e39afffb0c219f2e37c2f7b017192cc9c5bb3792dd6af985d7939124a0103da
2021-11-17T20:27:48,974   Stored in directory: /tmp/pip-ephem-wheel-cache-9k7xc8sb/wheels/8a/b1/2d/01f8adc4ebcad7413a08bfb5339c7f162c7548508554782e18
2021-11-17T20:27:48,993 Successfully built novartis-pisces
2021-11-17T20:27:49,008 Removed build tracker: '/tmp/pip-req-tracker-1_r832be'