2021-11-22T12:39:55,761 Created temporary directory: /tmp/pip-ephem-wheel-cache-x3uta74u
2021-11-22T12:39:55,767 Created temporary directory: /tmp/pip-req-tracker-91od7zmq
2021-11-22T12:39:55,768 Initialized build tracking at /tmp/pip-req-tracker-91od7zmq
2021-11-22T12:39:55,768 Created build tracker: /tmp/pip-req-tracker-91od7zmq
2021-11-22T12:39:55,769 Entered build tracker: /tmp/pip-req-tracker-91od7zmq
2021-11-22T12:39:55,770 Created temporary directory: /tmp/pip-wheel-ejco0iqi
2021-11-22T12:39:55,825 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-22T12:39:55,829 2 location(s) to search for versions of pele-platform:
2021-11-22T12:39:55,829 * https://pypi.org/simple/pele-platform/
2021-11-22T12:39:55,829 * https://www.piwheels.org/simple/pele-platform/
2021-11-22T12:39:55,829 Fetching project page and analyzing links: https://pypi.org/simple/pele-platform/
2021-11-22T12:39:55,832 Getting page https://pypi.org/simple/pele-platform/
2021-11-22T12:39:55,836 Found index url https://pypi.org/simple
2021-11-22T12:39:56,203   Found link https://files.pythonhosted.org/packages/f0/ac/9497572d7da4e501c8dddc3be3fa338744dbc27b67eb09275b8375fae2fd/pele_platform-1.0.0.1.tar.gz#sha256=e3c8bde654fe3d249714c4ddb1d3471944752f6840a6bcf4b399a3466931b838 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.1
2021-11-22T12:39:56,204   Found link https://files.pythonhosted.org/packages/79/a0/d1b4b9269c3fe9dd2edc878a2dec9d3f4e7701cc932272169f44a025c2a9/pele_platform-1.0.0.2.tar.gz#sha256=919f487c943e6e71a8d82e56dac3051605ffdc6a680d168b5233cea95c9e4701 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.2
2021-11-22T12:39:56,205   Found link https://files.pythonhosted.org/packages/a3/56/3cc9eb3b0ecf0943c4f4eb5b0729cd54906290f84dc4cfb230ad69ce99c6/pele_platform-1.0.0.3.tar.gz#sha256=ea4f3df0aeb65812e72eb9b24605146a7afeeb7f89ce7f769058c2e894654239 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.3
2021-11-22T12:39:56,206   Found link https://files.pythonhosted.org/packages/d0/6d/1ac79163749b10c7f694dde1db24063d4e2f57bcf365db1b8cfa1b9f7f57/pele_platform-1.1.0.tar.gz#sha256=25a644fc27c0c364bfece9addd278a74a5a7ea5f4ab40b31fa8cd961e7485a65 (from https://pypi.org/simple/pele-platform/), version: 1.1.0
2021-11-22T12:39:56,207   Found link https://files.pythonhosted.org/packages/fd/15/306ea35b1d4be507caf1613d05fc16c076f070c2a16e6283a331695fcb5e/pele_platform-1.2.0.tar.gz#sha256=2967a976bafc47884ca49864ca87d40d87aa50c2fc57900c1f0517e84e789153 (from https://pypi.org/simple/pele-platform/), version: 1.2.0
2021-11-22T12:39:56,208   Found link https://files.pythonhosted.org/packages/74/98/cf2442f668f8ad6be1838c3ce7b87a409eee7448a1d7d033862ad0bda36c/pele_platform-1.2.1.tar.gz#sha256=5d30d563960934362ac79eb7a24b8f4b831076dba29bbb498901a0b0a1dca367 (from https://pypi.org/simple/pele-platform/), version: 1.2.1
2021-11-22T12:39:56,209   Found link https://files.pythonhosted.org/packages/1a/78/29b2eb73308b595668a9c22abd93ac88f82c49ebc6b004f332a774166391/pele_platform-1.2.2.tar.gz#sha256=00f579740db5455cea04c82e86b87c8f53045496ba61d9f4e96436f1d0cdfb08 (from https://pypi.org/simple/pele-platform/), version: 1.2.2
2021-11-22T12:39:56,210   Found link https://files.pythonhosted.org/packages/fb/6b/85f262d33a080377ea5202d5779c9402c23aaefc4e1b04bb94d9432aad42/pele_platform-1.2.3.tar.gz#sha256=18713b6811d7689accb54dde5429aa5225dcb8e520164fd7b4037453c63f74d9 (from https://pypi.org/simple/pele-platform/), version: 1.2.3
2021-11-22T12:39:56,211   Found link https://files.pythonhosted.org/packages/d5/15/707e6b89f0ee479d173ef2fe6a41af1ff9d91dd86e45067da5cee56761d9/pele_platform-1.3.0.tar.gz#sha256=fb7fb5dd59f9e3a76d371be6aa0b013209752c464862bf944de6b2a2903424a9 (from https://pypi.org/simple/pele-platform/), version: 1.3.0
2021-11-22T12:39:56,212   Found link https://files.pythonhosted.org/packages/7c/b0/4fda3001d5f13010bc2005e335f799f24d2204fc700a847e28091b57fabb/pele_platform-1.3.1.tar.gz#sha256=c6c0ac764ae30ce8a0650cdf0fc686fd733cb6b11fc15e6cccd5659166be3b33 (from https://pypi.org/simple/pele-platform/), version: 1.3.1
2021-11-22T12:39:56,213   Found link https://files.pythonhosted.org/packages/34/21/2f68d91d200432e0feb4662f6ba5538817335d86df60688e3a6f050dd21b/pele_platform-1.3.2.tar.gz#sha256=14c6e236347a1101f5de04bc25a32f302904bdb46326fb151c14e930a28d7a48 (from https://pypi.org/simple/pele-platform/), version: 1.3.2
2021-11-22T12:39:56,214   Found link https://files.pythonhosted.org/packages/63/a6/ad0bc781b4089093fd8aca4d75d237e0c0ae9d1f6b7e4b86a733f5a91b10/pele_platform-1.3.3.tar.gz#sha256=9e9e49d359bde42485b1c2d23b8a80c3de43064a672c260d18b9f10b55ee666e (from https://pypi.org/simple/pele-platform/), version: 1.3.3
2021-11-22T12:39:56,214   Found link https://files.pythonhosted.org/packages/e7/6a/4d8e75e0dbff74b22c76f4640a72798acfe6f55e35dcf0e9080dc8f36857/pele_platform-1.3.4.tar.gz#sha256=b8f7a2caac267df0381e8a3d73ddfeaec60cccc22336aa76178dbf3d2b2e880b (from https://pypi.org/simple/pele-platform/), version: 1.3.4
2021-11-22T12:39:56,215   Found link https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 (from https://pypi.org/simple/pele-platform/), version: 1.4.0
2021-11-22T12:39:56,216   Found link https://files.pythonhosted.org/packages/ed/11/ff7cdcb7a17869082a94fc4c066a8bc6407a07f7c542c1dbc4919b1e091a/pele_platform-1.4.1.tar.gz#sha256=2f5327616aeff5be40d54b2771fd43b8cdb75086944c11800339bd44e0866c01 (from https://pypi.org/simple/pele-platform/), version: 1.4.1
2021-11-22T12:39:56,217   Found link https://files.pythonhosted.org/packages/4b/4f/fec23d74e8b1474fe25234fd34972a427234307dc9f7908f916e50036d81/pele_platform-1.4.2.tar.gz#sha256=c1092fb5c5cdb38736f621c434ff3112ea1cd1abc94d0bfe03ea7044b6e06612 (from https://pypi.org/simple/pele-platform/), version: 1.4.2
2021-11-22T12:39:56,218   Found link https://files.pythonhosted.org/packages/7a/b3/8eeb8c773a4fbf6561a929b8bab563f31384a0512a4708b4d0249ebc8c24/pele_platform-1.4.3.tar.gz#sha256=e491ac06c05301a846084e07ab709abf4b0507768710256443b6523b25339c40 (from https://pypi.org/simple/pele-platform/), version: 1.4.3
2021-11-22T12:39:56,219   Found link https://files.pythonhosted.org/packages/92/57/ff446766add00995f3fa0446f9c32ad52b759bab05d3f41e5ee51a8e76a8/pele_platform-1.4.4.tar.gz#sha256=eca94d45d76664106cff9915781740932635878b203b430d62f7aeb252ce59c7 (from https://pypi.org/simple/pele-platform/), version: 1.4.4
2021-11-22T12:39:56,220   Found link https://files.pythonhosted.org/packages/6d/f3/5ad1c5dab958edc8ecfb75883f8ac760308e570f3a0929104ba01a223f02/pele_platform-1.5.0.tar.gz#sha256=0b7eed2abd70f20caadcf9e9c8642cfc51d55d66ab114e42f0d425bfb6603323 (from https://pypi.org/simple/pele-platform/), version: 1.5.0
2021-11-22T12:39:56,221   Found link https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93 (from https://pypi.org/simple/pele-platform/), version: 1.5.1
2021-11-22T12:39:56,222   Found link https://files.pythonhosted.org/packages/05/85/4cfdad270ebf569727204cbc9de66f22ef802d5079846f2631e1e6a11059/pele_platform-1.6.0b1.tar.gz#sha256=a7b5e566ec00598a1991d44c8748267104e5a123f462365a584632c94b36a7bf (from https://pypi.org/simple/pele-platform/), version: 1.6.0b1
2021-11-22T12:39:56,223   Found link https://files.pythonhosted.org/packages/c0/d6/f49f102325943cd3a82086e4740dfabd416c278d21ef9f3097fc1bb0ba7a/pele_platform-1.6.0b2.tar.gz#sha256=6bf2be383e50f6654f49f87e44dfc548f2aa1f5f002b25089ae2089ab0a92654 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b2
2021-11-22T12:39:56,223   Found link https://files.pythonhosted.org/packages/f7/16/8db67212a622716e71ea8a9664e4da6207ae136369f2d1b3b802ca39baee/pele_platform-1.6.0b3.tar.gz#sha256=916a0f278c53e5eec786008a498654481c2e76b90b4385e75398872fd28b1f6e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b3
2021-11-22T12:39:56,224   Found link https://files.pythonhosted.org/packages/f3/46/ecebcaed96148f710c2aa716f1a4862033073dfe8c1da1c7283d32b766b4/pele_platform-1.6.0b4.tar.gz#sha256=1e6cdaab94470fa0de99010c2e51ed94e1634b14c9a53206b6f33e838616b361 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b4
2021-11-22T12:39:56,225   Found link https://files.pythonhosted.org/packages/7a/03/3f391e98e553a1cea233c87fe3d33171be5b3851fbf37869ccdfebca58c4/pele_platform-1.6.0b5.tar.gz#sha256=9e98fe723a6e9b2d67e7c95441f23bc98f550d4d824a47614981b39643e4781d (from https://pypi.org/simple/pele-platform/), version: 1.6.0b5
2021-11-22T12:39:56,226   Found link https://files.pythonhosted.org/packages/e1/28/b31c1b1b3daf0bc65f6c3d09cad23ec355868feb94787f0adc4407c60364/pele_platform-1.6.0b6.tar.gz#sha256=63327ad61bcbfa4e69c138e5ec38621194b929c5e271b21d01c359961fd8e805 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b6
2021-11-22T12:39:56,227   Found link https://files.pythonhosted.org/packages/3c/b6/8ebb9f0d293a32db481b1bd6e620d5b04e73b2bf516bcedbd22033f16016/pele_platform-1.6.0b7.tar.gz#sha256=e5e3a57d5eb74bf3f664714017549f773f71f325da381666f8f872c38c12d06e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b7
2021-11-22T12:39:56,228   Found link https://files.pythonhosted.org/packages/bf/83/ff52f07ec4bc23a134b0fcb5ea792d20ee925939a73bc0a2cc867e47378c/pele_platform-1.6.0rc1.tar.gz#sha256=34a396a464e091c199e16e4d7fdce545eb8e1acde49096d61f5c5f04a220b1d7 (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc1
2021-11-22T12:39:56,229   Found link https://files.pythonhosted.org/packages/43/3a/60b79f3dae3de9b5568620f8d2bf4fc3d2a80a2bf055d2699f962b5cdd27/pele_platform-1.6.0rc2.tar.gz#sha256=1056394184b738486172547f015fa65ca7830cec5605bb99c86741908b3db07a (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc2
2021-11-22T12:39:56,230   Found link https://files.pythonhosted.org/packages/27/be/a3c190f0a24fc9e18c3cd0ba2a328e597ee96e6722081e796f43afd3b706/pele_platform-1.6.0.tar.gz#sha256=648184346e6e4b63b1f13885f806143a875b6d5da59e53a5edb3b4e421bd1f90 (from https://pypi.org/simple/pele-platform/), version: 1.6.0
2021-11-22T12:39:56,231   Found link https://files.pythonhosted.org/packages/af/84/f0a7c07cdbfbdcd341b42a0be1496e1bd61f5c6c163980ad5c67cb0fa5ea/pele_platform-1.6.1.tar.gz#sha256=0ca1ca7bad3f7907b0d55efc35c3f376004da60586f488b7358f66be90a8ba3b (from https://pypi.org/simple/pele-platform/), version: 1.6.1
2021-11-22T12:39:56,232 Fetching project page and analyzing links: https://www.piwheels.org/simple/pele-platform/
2021-11-22T12:39:56,232 Getting page https://www.piwheels.org/simple/pele-platform/
2021-11-22T12:39:56,235 Found index url https://www.piwheels.org/simple
2021-11-22T12:39:56,574   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=cfa754261c485621955deb1b1b977ab76c3b11decc3791d2046182c538a53265 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,575   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=cfa754261c485621955deb1b1b977ab76c3b11decc3791d2046182c538a53265 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,576   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp34-cp34m-linux_armv6l.whl#sha256=8f9f46188cfb1375d1376a62f3cb8fc59775700ecd1d3268ea0decb9de1f2768 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,576   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp34-cp34m-linux_armv7l.whl#sha256=8f9f46188cfb1375d1376a62f3cb8fc59775700ecd1d3268ea0decb9de1f2768 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,577   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=c1794338b7c93baf55885b2f40257cdf706bdd2f6fc21d38cbf1f865d162899c (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,578   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=c1794338b7c93baf55885b2f40257cdf706bdd2f6fc21d38cbf1f865d162899c (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,578   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=52970c8a6e59fe092e264cde9de8c639a778852faaecb06fb6c8b6146b06136d (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,579   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=52970c8a6e59fe092e264cde9de8c639a778852faaecb06fb6c8b6146b06136d (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,580   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp39-cp39-linux_armv6l.whl#sha256=eb926ca03cf91a68265839e92d4b00873d99a215e9c99afc7807424ff391cbe5 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,580   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp39-cp39-linux_armv7l.whl#sha256=eb926ca03cf91a68265839e92d4b00873d99a215e9c99afc7807424ff391cbe5 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,581   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp34-cp34m-linux_armv6l.whl#sha256=e98b858f83fb7cb0f5c4f4c9dde11da1d2f97a22da162624fc253addfc1b1c56 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,581   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp34-cp34m-linux_armv7l.whl#sha256=e98b858f83fb7cb0f5c4f4c9dde11da1d2f97a22da162624fc253addfc1b1c56 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,582   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp35-cp35m-linux_armv6l.whl#sha256=39e33c6f24821296c6910712ef8253e663d36726ac6e084ba121a3b744d39a47 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,583   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp35-cp35m-linux_armv7l.whl#sha256=39e33c6f24821296c6910712ef8253e663d36726ac6e084ba121a3b744d39a47 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,583   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp37-cp37m-linux_armv6l.whl#sha256=343a8ef460b700f7e0e9661ea7252a162c6c9c4b4b2152d24075e1d08c7f588e (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,584   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp37-cp37m-linux_armv7l.whl#sha256=343a8ef460b700f7e0e9661ea7252a162c6c9c4b4b2152d24075e1d08c7f588e (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,585   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp39-cp39-linux_armv6l.whl#sha256=3690e174ecc0095e8ed79d7507ce4c0f013996a92962bc170ccec96812788f82 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,585   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp39-cp39-linux_armv7l.whl#sha256=3690e174ecc0095e8ed79d7507ce4c0f013996a92962bc170ccec96812788f82 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,586   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp34-cp34m-linux_armv6l.whl#sha256=6b7773052481af929dcfc3febcf09d20a46e1d2084eaebc566c246dff6c6402f (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,587   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp34-cp34m-linux_armv7l.whl#sha256=6b7773052481af929dcfc3febcf09d20a46e1d2084eaebc566c246dff6c6402f (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,587   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5422629ba4988a3474b07aa6a3700267d19adaa0f82c61093cab9112c93bd31d (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,588   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5422629ba4988a3474b07aa6a3700267d19adaa0f82c61093cab9112c93bd31d (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,589   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=f64dcc740377ca2dc0c89b34443c76b869be5977d38e447ed414f2393bfc52dc (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,589   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=f64dcc740377ca2dc0c89b34443c76b869be5977d38e447ed414f2393bfc52dc (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,590   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=148e98b510ed810e6a520881ee1edb8f316c2ad632465a45a7339d122fed8caa (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,591   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=148e98b510ed810e6a520881ee1edb8f316c2ad632465a45a7339d122fed8caa (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,591   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.0-py3-none-any.whl#sha256=67196e64d155c21e9e4a56fdb9e38d5616398ae761ef0a93ce090eeb61090b54 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,592   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.1-py3-none-any.whl#sha256=5b2ecf5371bc1ad3f63cc83a505f2b8b9a2ad97ae8acc489c472e6d7b048eedc (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,593   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.2-py3-none-any.whl#sha256=0e5b906d6a253a746477d3258f4056666bd2c0dc018ce61549911535a8f70869 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,593   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.3-py3-none-any.whl#sha256=7011b58018a73eb9b68717c27b2be53b806002a8ef6bc1dce96fca60556d5fea (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,594   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.0-py3-none-any.whl#sha256=90f15ddb37d1252e1b4d14b7693cc93eb154e8b32d688be1a0be9979027c226d (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,594   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.1-py3-none-any.whl#sha256=12870844d7c9a163afe074c7eefabc258a4d066ace893a0274f53f0c29b8fdcb (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,595   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.2-py3-none-any.whl#sha256=71ef46d8b3afde88aa24a2dbf708bb41b6953485ff83a0a208e9db2665fe10c4 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,596   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.3-py3-none-any.whl#sha256=465699b14119e4d2a842e4ec79acf9f1aeaf77128aa8c04accb887cfff11a2b4 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,596   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.4-py3-none-any.whl#sha256=80f7caf125762176eaeecf2bed6bb9b130bbbcd31f3214a8f5997be8870d2bc4 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,597   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.0-py3-none-any.whl#sha256=388fdc753c3b6bc741bf732aa9a6b85a29cc271d2367aacc4eadc381e8bd0b7c (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,598   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.1-py3-none-any.whl#sha256=c7436c7db75936bac606cc8af8d05a492b48c5d5bcb582871d479aca7a270451 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,598   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.2-py3-none-any.whl#sha256=78496fd0cf6b1bcc79201cb623eaae5f56156644e3da9b3d0d3a629649530f97 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,599   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.3-py3-none-any.whl#sha256=fac366abbd0979e83e3dc8b93274d820070e6d91fc0373aef5e3a10ce4b13aff (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,600   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.4-py3-none-any.whl#sha256=c335d006901d5acc5b99a37758afcf124c3dbc76cf935ebcbecf2031883da70f (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,600   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.5.0-py3-none-any.whl#sha256=6e46958311c83d72e2c0f5f9b84d2453ab73469c2b58f0e559093aaf935dfde3 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,601   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.5.1-py3-none-any.whl#sha256=1e2441185afe5cc09f11dd375ad35a722a8557cfa6d58dafa105b6cc82f8dace (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,602   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0-py3-none-any.whl#sha256=a90b83350ffdd162d0d81d6b1fc8f7193b5a97d25088dd494e44c9ed5bc1ee68 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,602   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b1-py3-none-any.whl#sha256=d11c7ac7f6e793af3a339a75fe273ad0a8257511394b6e6949f7f8ac3638c822 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,603   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b2-py3-none-any.whl#sha256=2c6c7cf955df0ed5f5eeaf9b2ab43ac47d2cfe7743f0defb67146a2806ecee74 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,603   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b3-py3-none-any.whl#sha256=cbeabf00ab1a808d4b718129133ceb184ab58585f12d82d7465fe35cfe520d9b (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,604   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b4-py3-none-any.whl#sha256=aef8869582a5860da64b5bcf629ee3e030c70dc783ce7834b7da2e3f4e32d47d (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,605   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b5-py3-none-any.whl#sha256=0fe0b546464bc694c651c606052043a0f7c9acaf125ba4bd1fde9f349e88e959 (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,605   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b6-py3-none-any.whl#sha256=03c84f86922a46a247c25d34fccab1287e71efb2795ad00da3313162b628b5fc (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,606   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b7-py3-none-any.whl#sha256=2bd15289b4956ee24558f807ff69319d0585a640c676e82f48b26d4f7eeb77fc (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,607   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0rc1-py3-none-any.whl#sha256=f17628f12454edfa542ff6dd8b1597e6dbe27366006582efa2b65537a009272d (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,607   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0rc2-py3-none-any.whl#sha256=089f457c494767a9d5153745dd6e12ae4c9093451d5ef15fea11ba0e5b603bad (from https://www.piwheels.org/simple/pele-platform/)
2021-11-22T12:39:56,649 Given no hashes to check 1 links for project 'pele-platform': discarding no candidates
2021-11-22T12:39:56,681 Collecting pele-platform==1.6.1
2021-11-22T12:39:56,685   Created temporary directory: /tmp/pip-unpack-ny_clb91
2021-11-22T12:39:57,347   Downloading pele_platform-1.6.1.tar.gz (12.3 MB)
2021-11-22T12:40:10,647   Added pele-platform==1.6.1 from https://files.pythonhosted.org/packages/af/84/f0a7c07cdbfbdcd341b42a0be1496e1bd61f5c6c163980ad5c67cb0fa5ea/pele_platform-1.6.1.tar.gz#sha256=0ca1ca7bad3f7907b0d55efc35c3f376004da60586f488b7358f66be90a8ba3b to build tracker '/tmp/pip-req-tracker-91od7zmq'
2021-11-22T12:40:10,650     Running setup.py (path:/tmp/pip-wheel-ejco0iqi/pele-platform_0822d13f4e72442582439a4eb21a09ed/setup.py) egg_info for package pele-platform
2021-11-22T12:40:10,651     Created temporary directory: /tmp/pip-pip-egg-info-t8o_bbiy
2021-11-22T12:40:10,652     Running command python setup.py egg_info
2021-11-22T12:40:13,103     running egg_info
2021-11-22T12:40:13,109     creating /tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info
2021-11-22T12:40:13,112     writing /tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info/PKG-INFO
2021-11-22T12:40:13,117     writing top-level names to /tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info/top_level.txt
2021-11-22T12:40:13,120     writing dependency_links to /tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info/dependency_links.txt
2021-11-22T12:40:13,123     writing requirements to /tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info/requires.txt
2021-11-22T12:40:13,127     writing manifest file '/tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info/SOURCES.txt'
2021-11-22T12:40:13,185     reading manifest file '/tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info/SOURCES.txt'
2021-11-22T12:40:13,188     reading manifest template 'MANIFEST.in'
2021-11-22T12:40:13,192     warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2021-11-22T12:40:13,193     warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2021-11-22T12:40:13,194     warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2021-11-22T12:40:13,194     warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2021-11-22T12:40:13,748     warning: no files found matching '*' under directory 'tests/data'
2021-11-22T12:40:13,795     writing manifest file '/tmp/pip-pip-egg-info-t8o_bbiy/pele_platform.egg-info/SOURCES.txt'
2021-11-22T12:40:13,932   Source in /tmp/pip-wheel-ejco0iqi/pele-platform_0822d13f4e72442582439a4eb21a09ed has version 1.6.1, which satisfies requirement pele-platform==1.6.1 from https://files.pythonhosted.org/packages/af/84/f0a7c07cdbfbdcd341b42a0be1496e1bd61f5c6c163980ad5c67cb0fa5ea/pele_platform-1.6.1.tar.gz#sha256=0ca1ca7bad3f7907b0d55efc35c3f376004da60586f488b7358f66be90a8ba3b
2021-11-22T12:40:13,934   Removed pele-platform==1.6.1 from https://files.pythonhosted.org/packages/af/84/f0a7c07cdbfbdcd341b42a0be1496e1bd61f5c6c163980ad5c67cb0fa5ea/pele_platform-1.6.1.tar.gz#sha256=0ca1ca7bad3f7907b0d55efc35c3f376004da60586f488b7358f66be90a8ba3b from build tracker '/tmp/pip-req-tracker-91od7zmq'
2021-11-22T12:40:13,943 Created temporary directory: /tmp/pip-unpack-9iee229f
2021-11-22T12:40:13,944 Building wheels for collected packages: pele-platform
2021-11-22T12:40:13,953   Created temporary directory: /tmp/pip-wheel-n5latce9
2021-11-22T12:40:13,954   Building wheel for pele-platform (setup.py): started
2021-11-22T12:40:13,955   Destination directory: /tmp/pip-wheel-n5latce9
2021-11-22T12:40:13,955   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ejco0iqi/pele-platform_0822d13f4e72442582439a4eb21a09ed/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ejco0iqi/pele-platform_0822d13f4e72442582439a4eb21a09ed/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-n5latce9
2021-11-22T12:40:16,374   running bdist_wheel
2021-11-22T12:40:16,383   running build
2021-11-22T12:40:16,384   running build_py
2021-11-22T12:40:16,396   creating build
2021-11-22T12:40:16,397   creating build/lib
2021-11-22T12:40:16,398   creating build/lib/pele_platform
2021-11-22T12:40:16,401   copying pele_platform/_version.py -> build/lib/pele_platform
2021-11-22T12:40:16,405   copying pele_platform/main.py -> build/lib/pele_platform
2021-11-22T12:40:16,409   copying pele_platform/plotter.py -> build/lib/pele_platform
2021-11-22T12:40:16,419   copying pele_platform/__init__.py -> build/lib/pele_platform
2021-11-22T12:40:16,424   creating build/lib/pele_platform/features
2021-11-22T12:40:16,426   copying pele_platform/features/adaptive.py -> build/lib/pele_platform/features
2021-11-22T12:40:16,433   copying pele_platform/features/__init__.py -> build/lib/pele_platform/features
2021-11-22T12:40:16,438   copying pele_platform/features/frag.py -> build/lib/pele_platform/features
2021-11-22T12:40:16,445   creating build/lib/pele_platform/out_in
2021-11-22T12:40:16,448   copying pele_platform/out_in/main.py -> build/lib/pele_platform/out_in
2021-11-22T12:40:16,453   copying pele_platform/out_in/__init__.py -> build/lib/pele_platform/out_in
2021-11-22T12:40:16,458   creating build/lib/pele_platform/Errors
2021-11-22T12:40:16,459   copying pele_platform/Errors/custom_errors.py -> build/lib/pele_platform/Errors
2021-11-22T12:40:16,463   copying pele_platform/Errors/__init__.py -> build/lib/pele_platform/Errors
2021-11-22T12:40:16,468   creating build/lib/pele_platform/analysis
2021-11-22T12:40:16,470   copying pele_platform/analysis/data.py -> build/lib/pele_platform/analysis
2021-11-22T12:40:16,481   copying pele_platform/analysis/plot.py -> build/lib/pele_platform/analysis
2021-11-22T12:40:16,488   copying pele_platform/analysis/__init__.py -> build/lib/pele_platform/analysis
2021-11-22T12:40:16,494   copying pele_platform/analysis/pdf_report.py -> build/lib/pele_platform/analysis
2021-11-22T12:40:16,499   copying pele_platform/analysis/analysis.py -> build/lib/pele_platform/analysis
2021-11-22T12:40:16,514   copying pele_platform/analysis/clustering.py -> build/lib/pele_platform/analysis
2021-11-22T12:40:16,521   copying pele_platform/analysis/interactive_plot.py -> build/lib/pele_platform/analysis
2021-11-22T12:40:16,531   creating build/lib/pele_platform/enzyme_engineering
2021-11-22T12:40:16,534   copying pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/lib/pele_platform/enzyme_engineering
2021-11-22T12:40:16,541   copying pele_platform/enzyme_engineering/__init__.py -> build/lib/pele_platform/enzyme_engineering
2021-11-22T12:40:16,547   creating build/lib/pele_platform/Utilities
2021-11-22T12:40:16,550   copying pele_platform/Utilities/__init__.py -> build/lib/pele_platform/Utilities
2021-11-22T12:40:16,557   creating build/lib/pele_platform/constants
2021-11-22T12:40:16,559   copying pele_platform/constants/constants.py -> build/lib/pele_platform/constants
2021-11-22T12:40:16,567   copying pele_platform/constants/__init__.py -> build/lib/pele_platform/constants
2021-11-22T12:40:16,572   copying pele_platform/constants/pele_params.py -> build/lib/pele_platform/constants
2021-11-22T12:40:16,579   creating build/lib/pele_platform/Checker
2021-11-22T12:40:16,581   copying pele_platform/Checker/valid_flags.py -> build/lib/pele_platform/Checker
2021-11-22T12:40:16,586   copying pele_platform/Checker/main.py -> build/lib/pele_platform/Checker
2021-11-22T12:40:16,591   copying pele_platform/Checker/pdb_checker.py -> build/lib/pele_platform/Checker
2021-11-22T12:40:16,597   copying pele_platform/Checker/__init__.py -> build/lib/pele_platform/Checker
2021-11-22T12:40:16,602   copying pele_platform/Checker/python_version.py -> build/lib/pele_platform/Checker
2021-11-22T12:40:16,607   copying pele_platform/Checker/environment_variables.py -> build/lib/pele_platform/Checker
2021-11-22T12:40:16,612   copying pele_platform/Checker/executable.py -> build/lib/pele_platform/Checker
2021-11-22T12:40:16,618   creating build/lib/pele_platform/Frag
2021-11-22T12:40:16,620   copying pele_platform/Frag/atoms.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,625   copying pele_platform/Frag/checker.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,629   copying pele_platform/Frag/simulation.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,636   copying pele_platform/Frag/fragments.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,642   copying pele_platform/Frag/helpers.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,649   copying pele_platform/Frag/__init__.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,655   copying pele_platform/Frag/analysis.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,662   copying pele_platform/Frag/generative_model.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,668   copying pele_platform/Frag/libraries.py -> build/lib/pele_platform/Frag
2021-11-22T12:40:16,676   creating build/lib/pele_platform/RNA
2021-11-22T12:40:16,678   copying pele_platform/RNA/__init__.py -> build/lib/pele_platform/RNA
2021-11-22T12:40:16,683   copying pele_platform/RNA/prep.py -> build/lib/pele_platform/RNA
2021-11-22T12:40:16,691   creating build/lib/pele_platform/covalent_docking
2021-11-22T12:40:16,694   copying pele_platform/covalent_docking/main.py -> build/lib/pele_platform/covalent_docking
2021-11-22T12:40:16,699   copying pele_platform/covalent_docking/__init__.py -> build/lib/pele_platform/covalent_docking
2021-11-22T12:40:16,703   creating build/lib/pele_platform/gpcr
2021-11-22T12:40:16,705   copying pele_platform/gpcr/main.py -> build/lib/pele_platform/gpcr
2021-11-22T12:40:16,710   copying pele_platform/gpcr/__init__.py -> build/lib/pele_platform/gpcr
2021-11-22T12:40:16,715   creating build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,717   copying pele_platform/Adaptive/parametrizer.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,728   copying pele_platform/Adaptive/interaction_restrictions.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,734   copying pele_platform/Adaptive/preequilibrator.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,740   copying pele_platform/Adaptive/simulation.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,749   copying pele_platform/Adaptive/plop_solvent.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,756   copying pele_platform/Adaptive/plop_ligand_parametrization.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,760   copying pele_platform/Adaptive/__init__.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,764   copying pele_platform/Adaptive/metrics.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,768   copying pele_platform/Adaptive/box.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,772   copying pele_platform/Adaptive/pca.py -> build/lib/pele_platform/Adaptive
2021-11-22T12:40:16,778   creating build/lib/pele_platform/site_finder
2021-11-22T12:40:16,781   copying pele_platform/site_finder/main.py -> build/lib/pele_platform/site_finder
2021-11-22T12:40:16,788   copying pele_platform/site_finder/__init__.py -> build/lib/pele_platform/site_finder
2021-11-22T12:40:16,794   creating build/lib/pele_platform/PPI
2021-11-22T12:40:16,797   copying pele_platform/PPI/cluster.py -> build/lib/pele_platform/PPI
2021-11-22T12:40:16,802   copying pele_platform/PPI/simulation_launcher.py -> build/lib/pele_platform/PPI
2021-11-22T12:40:16,806   copying pele_platform/PPI/main.py -> build/lib/pele_platform/PPI
2021-11-22T12:40:16,811   copying pele_platform/PPI/__init__.py -> build/lib/pele_platform/PPI
2021-11-22T12:40:16,814   copying pele_platform/PPI/preparation.py -> build/lib/pele_platform/PPI
2021-11-22T12:40:16,824   creating build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,827   copying pele_platform/Utilities/Helpers/bestStructs.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,835   copying pele_platform/Utilities/Helpers/map_atoms.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,841   copying pele_platform/Utilities/Helpers/launcher.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,845   copying pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,850   copying pele_platform/Utilities/Helpers/protein_wizard.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,855   copying pele_platform/Utilities/Helpers/yaml_parser.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,863   copying pele_platform/Utilities/Helpers/interaction_constraints.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,869   copying pele_platform/Utilities/Helpers/plop_launcher.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,875   copying pele_platform/Utilities/Helpers/center_of_mass.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,882   copying pele_platform/Utilities/Helpers/randomize.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,889   copying pele_platform/Utilities/Helpers/simulation.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,896   copying pele_platform/Utilities/Helpers/helpers.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,904   copying pele_platform/Utilities/Helpers/__init__.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,909   copying pele_platform/Utilities/Helpers/water.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,917   copying pele_platform/Utilities/Helpers/system_prep.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,924   copying pele_platform/Utilities/Helpers/missing_residues.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,930   copying pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,939   copying pele_platform/Utilities/Helpers/ligand_conformations.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,945   copying pele_platform/Utilities/Helpers/conda_deployment.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,950   copying pele_platform/Utilities/Helpers/template_builder.py -> build/lib/pele_platform/Utilities/Helpers
2021-11-22T12:40:16,957   creating build/lib/pele_platform/Utilities/Parameters
2021-11-22T12:40:16,959   copying pele_platform/Utilities/Parameters/__init__.py -> build/lib/pele_platform/Utilities/Parameters
2021-11-22T12:40:16,964   copying pele_platform/Utilities/Parameters/parameters.py -> build/lib/pele_platform/Utilities/Parameters
2021-11-22T12:40:16,970   creating build/lib/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:16,972   copying pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:16,978   copying pele_platform/Utilities/Helpers/constraints/__init__.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:16,983   copying pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:16,991   creating build/lib/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:16,994   copying pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:17,001   copying pele_platform/Utilities/Helpers/Metals/__init__.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:17,006   copying pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:17,013   creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-11-22T12:40:17,016   copying pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-11-22T12:40:17,020   copying pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-11-22T12:40:17,026   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-11-22T12:40:17,028   copying pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-11-22T12:40:17,035   copying pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-11-22T12:40:17,040   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-11-22T12:40:17,042   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-11-22T12:40:17,048   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-11-22T12:40:17,054   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-11-22T12:40:17,057   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-11-22T12:40:17,062   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-11-22T12:40:17,066   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-11-22T12:40:17,068   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-11-22T12:40:17,072   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-11-22T12:40:17,077   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-11-22T12:40:17,079   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-11-22T12:40:17,084   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-11-22T12:40:17,091   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-11-22T12:40:17,094   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-11-22T12:40:17,099   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-11-22T12:40:17,104   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-11-22T12:40:17,106   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-11-22T12:40:17,110   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-11-22T12:40:17,115   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-11-22T12:40:17,116   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-11-22T12:40:17,120   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-11-22T12:40:17,128   creating build/lib/pele_platform/Frag/parameters
2021-11-22T12:40:17,131   copying pele_platform/Frag/parameters/simulation.py -> build/lib/pele_platform/Frag/parameters
2021-11-22T12:40:17,137   copying pele_platform/Frag/parameters/optional.py -> build/lib/pele_platform/Frag/parameters
2021-11-22T12:40:17,142   copying pele_platform/Frag/parameters/__init__.py -> build/lib/pele_platform/Frag/parameters
2021-11-22T12:40:17,146   copying pele_platform/Frag/parameters/water.py -> build/lib/pele_platform/Frag/parameters
2021-11-22T12:40:17,151   copying pele_platform/Frag/parameters/metrics.py -> build/lib/pele_platform/Frag/parameters
2021-11-22T12:40:17,155   copying pele_platform/Frag/parameters/files.py -> build/lib/pele_platform/Frag/parameters
2021-11-22T12:40:17,159   running egg_info
2021-11-22T12:40:17,191   writing requirements to pele_platform.egg-info/requires.txt
2021-11-22T12:40:17,193   writing dependency_links to pele_platform.egg-info/dependency_links.txt
2021-11-22T12:40:17,195   writing pele_platform.egg-info/PKG-INFO
2021-11-22T12:40:17,200   writing top-level names to pele_platform.egg-info/top_level.txt
2021-11-22T12:40:17,244   reading manifest file 'pele_platform.egg-info/SOURCES.txt'
2021-11-22T12:40:17,272   reading manifest template 'MANIFEST.in'
2021-11-22T12:40:17,274   warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2021-11-22T12:40:17,275   warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2021-11-22T12:40:17,276   warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2021-11-22T12:40:17,276   warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2021-11-22T12:40:17,779   warning: no files found matching '*' under directory 'tests/data'
2021-11-22T12:40:17,851   writing manifest file 'pele_platform.egg-info/SOURCES.txt'
2021-11-22T12:40:17,963   creating build/lib/pele_platform/Examples
2021-11-22T12:40:17,964   copying pele_platform/Examples/test.sl -> build/lib/pele_platform/Examples
2021-11-22T12:40:17,970   creating build/lib/pele_platform/Examples/Adaptive
2021-11-22T12:40:17,972   copying pele_platform/Examples/Adaptive/STR.rot.assign -> build/lib/pele_platform/Examples/Adaptive
2021-11-22T12:40:17,977   copying pele_platform/Examples/Adaptive/adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2021-11-22T12:40:17,981   copying pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2021-11-22T12:40:17,987   copying pele_platform/Examples/Adaptive/strz -> build/lib/pele_platform/Examples/Adaptive
2021-11-22T12:40:17,997   copying pele_platform/Examples/Adaptive/test.sl -> build/lib/pele_platform/Examples/Adaptive
2021-11-22T12:40:18,003   creating build/lib/pele_platform/Examples/Msm
2021-11-22T12:40:18,005   copying pele_platform/Examples/Msm/AS4_INIT.mae -> build/lib/pele_platform/Examples/Msm
2021-11-22T12:40:18,014   copying pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/lib/pele_platform/Examples/Msm
2021-11-22T12:40:18,054   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/lib/pele_platform/Examples/Msm
2021-11-22T12:40:18,092   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/lib/pele_platform/Examples/Msm
2021-11-22T12:40:18,128   copying pele_platform/Examples/Msm/PR_AS4.pdb -> build/lib/pele_platform/Examples/Msm
2021-11-22T12:40:18,166   copying pele_platform/Examples/Msm/input.yaml -> build/lib/pele_platform/Examples/Msm
2021-11-22T12:40:18,173   creating build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,175   copying pele_platform/Examples/PPI/1f47_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,183   copying pele_platform/Examples/PPI/1f47_prep.pdb -> build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,209   copying pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,217   copying pele_platform/Examples/PPI/1tnf_prep.pdb -> build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,278   copying pele_platform/Examples/PPI/input.yaml -> build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,283   copying pele_platform/Examples/PPI/input_folder.yaml -> build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,289   copying pele_platform/Examples/PPI/input_skipref.yaml -> build/lib/pele_platform/Examples/PPI
2021-11-22T12:40:18,295   creating build/lib/pele_platform/Examples/RNA
2021-11-22T12:40:18,298   copying pele_platform/Examples/RNA/2l94.yaml -> build/lib/pele_platform/Examples/RNA
2021-11-22T12:40:18,305   copying pele_platform/Examples/RNA/5C45_prep.pdb -> build/lib/pele_platform/Examples/RNA
2021-11-22T12:40:18,348   copying pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/lib/pele_platform/Examples/RNA
2021-11-22T12:40:18,390   copying pele_platform/Examples/RNA/input.yaml -> build/lib/pele_platform/Examples/RNA
2021-11-22T12:40:18,395   copying pele_platform/Examples/RNA/input_induced.yaml -> build/lib/pele_platform/Examples/RNA
2021-11-22T12:40:18,400   creating build/lib/pele_platform/Examples/analysis
2021-11-22T12:40:18,402   copying pele_platform/Examples/analysis/input.yaml -> build/lib/pele_platform/Examples/analysis
2021-11-22T12:40:18,407   copying pele_platform/Examples/analysis/input_flags.yaml -> build/lib/pele_platform/Examples/analysis
2021-11-22T12:40:18,413   copying pele_platform/Examples/analysis/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis
2021-11-22T12:40:18,420   copying pele_platform/Examples/analysis/input_xtc.yaml -> build/lib/pele_platform/Examples/analysis
2021-11-22T12:40:18,426   creating build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,428   copying pele_platform/Examples/analysis/data/MG.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,433   copying pele_platform/Examples/analysis/data/STR.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,437   copying pele_platform/Examples/analysis/data/adaptive.conf -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,441   copying pele_platform/Examples/analysis/data/input.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,446   copying pele_platform/Examples/analysis/data/input_flags.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,452   copying pele_platform/Examples/analysis/data/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,458   copying pele_platform/Examples/analysis/data/input_mae.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,465   copying pele_platform/Examples/analysis/data/mgz -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,470   copying pele_platform/Examples/analysis/data/pele.conf -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,475   copying pele_platform/Examples/analysis/data/strz -> build/lib/pele_platform/Examples/analysis/data
2021-11-22T12:40:18,479   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output
2021-11-22T12:40:18,479   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:18,482   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:18,487   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:18,493   copying pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:18,499   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:18,543   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:18,656   creating build/lib/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:18,660   copying pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:18,702   copying pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:18,741   copying pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:18,780   creating build/lib/pele_platform/Examples/analysis/data/output
2021-11-22T12:40:18,782   copying pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/lib/pele_platform/Examples/analysis/data/output
2021-11-22T12:40:18,787   creating build/lib/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:18,789   copying pele_platform/Examples/analysis/data/output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:18,795   copying pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:18,801   copying pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:18,841   creating build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-11-22T12:40:18,844   copying pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-11-22T12:40:18,885   copying pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-11-22T12:40:18,892   creating build/lib/pele_platform/Examples/analysis/data/output/synchronization
2021-11-22T12:40:18,894   copying pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/analysis/data/output/synchronization
2021-11-22T12:40:18,901   creating build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-11-22T12:40:18,904   copying pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-11-22T12:40:18,941   copying pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-11-22T12:40:18,981   creating build/lib/pele_platform/Examples/analysis/data/xtc
2021-11-22T12:40:18,983   copying pele_platform/Examples/analysis/data/xtc/summary.csv -> build/lib/pele_platform/Examples/analysis/data/xtc
2021-11-22T12:40:18,990   creating build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:18,993   copying pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:18,999   copying pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:19,006   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:19,013   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:19,020   creating build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2021-11-22T12:40:19,022   copying pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2021-11-22T12:40:19,038   creating build/lib/pele_platform/Examples/bias
2021-11-22T12:40:19,040   copying pele_platform/Examples/bias/complex.pdb -> build/lib/pele_platform/Examples/bias
2021-11-22T12:40:19,079   copying pele_platform/Examples/bias/input_defaults.yaml -> build/lib/pele_platform/Examples/bias
2021-11-22T12:40:19,085   creating build/lib/pele_platform/Examples/box
2021-11-22T12:40:19,087   copying pele_platform/Examples/box/input.yaml -> build/lib/pele_platform/Examples/box
2021-11-22T12:40:19,094   creating build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,096   copying pele_platform/Examples/checker/capped.pdb -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,229   copying pele_platform/Examples/checker/capped_no_connects.pdb -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,359   copying pele_platform/Examples/checker/complex.pdb -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,405   copying pele_platform/Examples/checker/complex2.pdb -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,431   copying pele_platform/Examples/checker/complex_unk.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,499   copying pele_platform/Examples/checker/incompatible_flags.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,505   copying pele_platform/Examples/checker/input.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,511   copying pele_platform/Examples/checker/input_atom_string.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,517   copying pele_platform/Examples/checker/input_env.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,523   copying pele_platform/Examples/checker/input_map_atom_num.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,527   copying pele_platform/Examples/checker/input_map_atom_str.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,532   copying pele_platform/Examples/checker/input_pele_exec.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,536   copying pele_platform/Examples/checker/input_rotamer.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,540   copying pele_platform/Examples/checker/input_space.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,546   copying pele_platform/Examples/checker/input_tab.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,552   copying pele_platform/Examples/checker/input_template.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,559   copying pele_platform/Examples/checker/input_underscore.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,565   copying pele_platform/Examples/checker/input_unk.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,571   copying pele_platform/Examples/checker/ligand2.pdb -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,578   copying pele_platform/Examples/checker/mapping_complex.pdb -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,644   copying pele_platform/Examples/checker/multiple_simulations.yaml -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,650   copying pele_platform/Examples/checker/negative_residues.pdb -> build/lib/pele_platform/Examples/checker
2021-11-22T12:40:19,656   creating build/lib/pele_platform/Examples/clustering
2021-11-22T12:40:19,659   copying pele_platform/Examples/clustering/summary.csv -> build/lib/pele_platform/Examples/clustering
2021-11-22T12:40:19,665   creating build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,668   copying pele_platform/Examples/clustering/0/report_1 -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,673   copying pele_platform/Examples/clustering/0/report_2 -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,677   copying pele_platform/Examples/clustering/0/report_3 -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,682   copying pele_platform/Examples/clustering/0/report_4 -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,687   copying pele_platform/Examples/clustering/0/topologyMapping.txt -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,693   copying pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,762   copying pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,798   copying pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,866   copying pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-11-22T12:40:19,937   creating build/lib/pele_platform/Examples/clustering/0/clustering
2021-11-22T12:40:19,939   copying pele_platform/Examples/clustering/0/clustering/object.pkl -> build/lib/pele_platform/Examples/clustering/0/clustering
2021-11-22T12:40:20,163   copying pele_platform/Examples/clustering/0/clustering/summary.txt -> build/lib/pele_platform/Examples/clustering/0/clustering
2021-11-22T12:40:20,169   creating build/lib/pele_platform/Examples/clustering_xtc
2021-11-22T12:40:20,171   copying pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/lib/pele_platform/Examples/clustering_xtc
2021-11-22T12:40:20,178   creating build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,180   copying pele_platform/Examples/clustering_xtc/0/report_1 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,187   copying pele_platform/Examples/clustering_xtc/0/report_2 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,193   copying pele_platform/Examples/clustering_xtc/0/report_3 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,200   copying pele_platform/Examples/clustering_xtc/0/report_4 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,207   copying pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,246   copying pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,256   copying pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,265   copying pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,275   copying pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:20,286   creating build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,288   copying pele_platform/Examples/constraints/1zop.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,319   copying pele_platform/Examples/constraints/4l3a_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,374   copying pele_platform/Examples/constraints/4qnr_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,427   copying pele_platform/Examples/constraints/4w4o_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,460   copying pele_platform/Examples/constraints/4w5i_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,494   copying pele_platform/Examples/constraints/4zu9_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,609   copying pele_platform/Examples/constraints/ca_constraints.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,676   copying pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,719   copying pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,725   copying pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,731   copying pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,737   copying pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,743   copying pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,748   copying pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,753   copying pele_platform/Examples/constraints/input_external_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,757   copying pele_platform/Examples/constraints/input_ignore.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,762   copying pele_platform/Examples/constraints/input_k.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,767   copying pele_platform/Examples/constraints/input_metals.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,773   copying pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,779   copying pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,785   copying pele_platform/Examples/constraints/input_smiles_error.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,790   copying pele_platform/Examples/constraints/input_square_planar.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,795   copying pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,799   copying pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,804   copying pele_platform/Examples/constraints/no_connects.pdb -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,809   copying pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-11-22T12:40:20,815   creating build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,818   copying pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,879   copying pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,932   copying pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,972   copying pele_platform/Examples/covalent_docking/input1.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,980   copying pele_platform/Examples/covalent_docking/input2.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,988   copying pele_platform/Examples/covalent_docking/input3.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,993   copying pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:20,999   copying pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-11-22T12:40:21,004   creating build/lib/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:21,007   copying pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:21,013   copying pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:21,018   copying pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:21,024   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-11-22T12:40:21,027   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-11-22T12:40:21,034   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:21,038   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:21,047   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:21,053   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:21,060   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:21,066   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2021-11-22T12:40:21,067   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-11-22T12:40:21,070   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-11-22T12:40:21,077   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2021-11-22T12:40:21,079   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2021-11-22T12:40:21,080   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-11-22T12:40:21,084   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-11-22T12:40:21,091   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:21,093   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:21,154   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:21,216   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:21,275   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:21,335   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:21,340   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:21,398   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-11-22T12:40:21,400   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-11-22T12:40:21,406   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-11-22T12:40:21,407   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-11-22T12:40:21,412   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-11-22T12:40:21,414   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-11-22T12:40:21,419   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-11-22T12:40:21,424   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:21,426   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:21,431   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:21,435   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:21,550   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:21,664   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:21,666   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:21,671   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:21,677   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:21,797   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:21,917   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-11-22T12:40:21,919   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-11-22T12:40:21,924   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:21,926   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:22,030   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:22,094   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:22,158   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:22,160   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:22,168   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:22,227   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:22,286   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:22,288   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:22,293   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:22,298   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:22,303   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:22,310   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:22,313   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:22,377   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:22,441   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:22,448   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:22,508   creating build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:22,510   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:22,570   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:22,631   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:22,693   creating build/lib/pele_platform/Examples/exit
2021-11-22T12:40:22,695   copying pele_platform/Examples/exit/input.yaml -> build/lib/pele_platform/Examples/exit
2021-11-22T12:40:22,700   copying pele_platform/Examples/exit/input_defaults.yaml -> build/lib/pele_platform/Examples/exit
2021-11-22T12:40:22,705   creating build/lib/pele_platform/Examples/exit_soft
2021-11-22T12:40:22,706   copying pele_platform/Examples/exit_soft/input.yaml -> build/lib/pele_platform/Examples/exit_soft
2021-11-22T12:40:22,713   copying pele_platform/Examples/exit_soft/input_defaults.yaml -> build/lib/pele_platform/Examples/exit_soft
2021-11-22T12:40:22,719   creating build/lib/pele_platform/Examples/flags
2021-11-22T12:40:22,722   copying pele_platform/Examples/flags/input.yaml -> build/lib/pele_platform/Examples/flags
2021-11-22T12:40:22,730   creating build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,732   copying pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,756   copying pele_platform/Examples/frag/1dyi_waters.pdb -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,780   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,829   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,879   copying pele_platform/Examples/frag/amino.pdb -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,885   copying pele_platform/Examples/frag/analysis.conf -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,892   copying pele_platform/Examples/frag/core.pdb -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,896   copying pele_platform/Examples/frag/flags.conf -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,901   copying pele_platform/Examples/frag/input_ai.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,905   copying pele_platform/Examples/frag/input_core.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,909   copying pele_platform/Examples/frag/input_core_sdf.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,914   copying pele_platform/Examples/frag/input_flags.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,919   copying pele_platform/Examples/frag/input_frag_waters.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,923   copying pele_platform/Examples/frag/input_fragment_atom.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,927   copying pele_platform/Examples/frag/input_lib_pdb.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,932   copying pele_platform/Examples/frag/input_lib_sdf.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,936   copying pele_platform/Examples/frag/input_point_analysis.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,941   copying pele_platform/Examples/frag/input_sim.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,946   copying pele_platform/Examples/frag/input_sim_xtc.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,950   copying pele_platform/Examples/frag/input_symmetry.yaml -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,955   copying pele_platform/Examples/frag/ligands.sdf -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,960   copying pele_platform/Examples/frag/ligands_water.sdf -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,965   copying pele_platform/Examples/frag/sequential.conf -> build/lib/pele_platform/Examples/frag
2021-11-22T12:40:22,970   creating build/lib/pele_platform/Examples/frag/analysis_data
2021-11-22T12:40:22,971   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1
2021-11-22T12:40:22,972   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:22,975   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_1 -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:22,982   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_2 -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:22,989   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_1.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:23,084   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_2.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:23,178   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-11-22T12:40:23,180   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-11-22T12:40:23,232   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-11-22T12:40:23,283   creating build/lib/pele_platform/Examples/frag/checker
2021-11-22T12:40:23,286   copying pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/checker
2021-11-22T12:40:23,293   copying pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/checker
2021-11-22T12:40:23,301   copying pele_platform/Examples/frag/checker/receptor.sdf -> build/lib/pele_platform/Examples/frag/checker
2021-11-22T12:40:23,332   creating build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-11-22T12:40:23,334   copying pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-11-22T12:40:23,341   copying pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-11-22T12:40:23,347   creating build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,350   copying pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,364   copying pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,414   copying pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,463   copying pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,472   copying pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,633   copying pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,653   copying pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,663   copying pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,669   copying pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,680   copying pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,685   copying pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,696   copying pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,703   copying pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,715   copying pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,721   copying pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,728   copying pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:23,806   creating build/lib/pele_platform/Examples/frag/sdf_test_lib
2021-11-22T12:40:23,808   copying pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/lib/pele_platform/Examples/frag/sdf_test_lib
2021-11-22T12:40:23,814   creating build/lib/pele_platform/Examples/global
2021-11-22T12:40:23,817   copying pele_platform/Examples/global/input.yaml -> build/lib/pele_platform/Examples/global
2021-11-22T12:40:23,824   copying pele_platform/Examples/global/input_defaults.yaml -> build/lib/pele_platform/Examples/global
2021-11-22T12:40:23,830   copying pele_platform/Examples/global/input_inputs.yaml -> build/lib/pele_platform/Examples/global
2021-11-22T12:40:23,836   copying pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/lib/pele_platform/Examples/global
2021-11-22T12:40:23,840   creating build/lib/pele_platform/Examples/gpcr
2021-11-22T12:40:23,842   copying pele_platform/Examples/gpcr/complex.pdb -> build/lib/pele_platform/Examples/gpcr
2021-11-22T12:40:23,885   copying pele_platform/Examples/gpcr/complex_processed.pdb -> build/lib/pele_platform/Examples/gpcr
2021-11-22T12:40:23,930   copying pele_platform/Examples/gpcr/input.yaml -> build/lib/pele_platform/Examples/gpcr
2021-11-22T12:40:23,936   copying pele_platform/Examples/gpcr/input_atom_error.yaml -> build/lib/pele_platform/Examples/gpcr
2021-11-22T12:40:23,943   copying pele_platform/Examples/gpcr/input_defaults.yaml -> build/lib/pele_platform/Examples/gpcr
2021-11-22T12:40:23,949   copying pele_platform/Examples/gpcr/input_defaults2.yaml -> build/lib/pele_platform/Examples/gpcr
2021-11-22T12:40:23,955   creating build/lib/pele_platform/Examples/induced_fit
2021-11-22T12:40:23,957   copying pele_platform/Examples/induced_fit/input_auto_clustering.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-11-22T12:40:23,962   copying pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-11-22T12:40:23,967   copying pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-11-22T12:40:23,972   copying pele_platform/Examples/induced_fit/input_fast.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-11-22T12:40:23,978   copying pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-11-22T12:40:23,985   copying pele_platform/Examples/induced_fit/input_mae.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-11-22T12:40:23,991   creating build/lib/pele_platform/Examples/inputs
2021-11-22T12:40:23,994   copying pele_platform/Examples/inputs/input.yaml -> build/lib/pele_platform/Examples/inputs
2021-11-22T12:40:23,999   copying pele_platform/Examples/inputs/mn4.sl -> build/lib/pele_platform/Examples/inputs
2021-11-22T12:40:24,004   copying pele_platform/Examples/inputs/nord3.sge -> build/lib/pele_platform/Examples/inputs
2021-11-22T12:40:24,009   creating build/lib/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:24,011   copying pele_platform/Examples/interaction_restrictions/complex.pdb -> build/lib/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:24,076   copying pele_platform/Examples/interaction_restrictions/input.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:24,082   copying pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:24,089   copying pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:24,095   creating build/lib/pele_platform/Examples/interaction_restrictions/out
2021-11-22T12:40:24,098   copying pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2021-11-22T12:40:24,103   copying pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2021-11-22T12:40:24,108   creating build/lib/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:24,110   copying pele_platform/Examples/ligand_conformations/1.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:24,115   copying pele_platform/Examples/ligand_conformations/2.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:24,122   copying pele_platform/Examples/ligand_conformations/3.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:24,129   copying pele_platform/Examples/ligand_conformations/input.yaml -> build/lib/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:24,135   creating build/lib/pele_platform/Examples/minimum_steps
2021-11-22T12:40:24,138   copying pele_platform/Examples/minimum_steps/complex.pdb -> build/lib/pele_platform/Examples/minimum_steps
2021-11-22T12:40:24,204   copying pele_platform/Examples/minimum_steps/input.yaml -> build/lib/pele_platform/Examples/minimum_steps
2021-11-22T12:40:24,210   creating build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,213   copying pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,254   copying pele_platform/Examples/out_in/input.yaml -> build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,262   copying pele_platform/Examples/out_in/input_auto_clustering.yaml -> build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,270   copying pele_platform/Examples/out_in/input_box_center.yaml -> build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,277   copying pele_platform/Examples/out_in/input_default.yaml -> build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,284   copying pele_platform/Examples/out_in/input_flag_error.yaml -> build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,290   copying pele_platform/Examples/out_in/input_metrics.yaml -> build/lib/pele_platform/Examples/out_in
2021-11-22T12:40:24,297   creating build/lib/pele_platform/Examples/pca
2021-11-22T12:40:24,299   copying pele_platform/Examples/pca/1.pdb -> build/lib/pele_platform/Examples/pca
2021-11-22T12:40:24,341   copying pele_platform/Examples/pca/2.pdb -> build/lib/pele_platform/Examples/pca
2021-11-22T12:40:24,383   copying pele_platform/Examples/pca/3.pdb -> build/lib/pele_platform/Examples/pca
2021-11-22T12:40:24,427   copying pele_platform/Examples/pca/input.yaml -> build/lib/pele_platform/Examples/pca
2021-11-22T12:40:24,433   copying pele_platform/Examples/pca/input_str.yaml -> build/lib/pele_platform/Examples/pca
2021-11-22T12:40:24,440   creating build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,443   copying pele_platform/Examples/preparation/6qmk_correct.pdb -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,491   copying pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,548   copying pele_platform/Examples/preparation/complex.pdb -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,585   copying pele_platform/Examples/preparation/complex_2.pdb -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,643   copying pele_platform/Examples/preparation/input.yaml -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,651   copying pele_platform/Examples/preparation/input_nonstandard.yaml -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,658   copying pele_platform/Examples/preparation/input_space.yaml -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,667   copying pele_platform/Examples/preparation/parametrization_flags.yaml -> build/lib/pele_platform/Examples/preparation
2021-11-22T12:40:24,674   creating build/lib/pele_platform/Examples/production
2021-11-22T12:40:24,677   copying pele_platform/Examples/production/input.sl -> build/lib/pele_platform/Examples/production
2021-11-22T12:40:24,684   copying pele_platform/Examples/production/input_mae.yaml -> build/lib/pele_platform/Examples/production
2021-11-22T12:40:24,691   creating build/lib/pele_platform/Examples/randomize
2021-11-22T12:40:24,694   copying pele_platform/Examples/randomize/ligand1.pdb -> build/lib/pele_platform/Examples/randomize
2021-11-22T12:40:24,703   copying pele_platform/Examples/randomize/ligand2.pdb -> build/lib/pele_platform/Examples/randomize
2021-11-22T12:40:24,710   copying pele_platform/Examples/randomize/ligand3.pdb -> build/lib/pele_platform/Examples/randomize
2021-11-22T12:40:24,718   copying pele_platform/Examples/randomize/receptor.pdb -> build/lib/pele_platform/Examples/randomize
2021-11-22T12:40:24,766   copying pele_platform/Examples/randomize/ref_ligand.pdb -> build/lib/pele_platform/Examples/randomize
2021-11-22T12:40:24,773   creating build/lib/pele_platform/Examples/rescoring
2021-11-22T12:40:24,776   copying pele_platform/Examples/rescoring/input.yaml -> build/lib/pele_platform/Examples/rescoring
2021-11-22T12:40:24,782   copying pele_platform/Examples/rescoring/input_defaults.yaml -> build/lib/pele_platform/Examples/rescoring
2021-11-22T12:40:24,788   creating build/lib/pele_platform/Examples/restart
2021-11-22T12:40:24,791   copying pele_platform/Examples/restart/restart.yaml -> build/lib/pele_platform/Examples/restart
2021-11-22T12:40:24,799   creating build/lib/pele_platform/Examples/singularity
2021-11-22T12:40:24,803   copying pele_platform/Examples/singularity/input_adaptive.yaml -> build/lib/pele_platform/Examples/singularity
2021-11-22T12:40:24,812   copying pele_platform/Examples/singularity/input_frag.yaml -> build/lib/pele_platform/Examples/singularity
2021-11-22T12:40:24,817   creating build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,819   copying pele_platform/Examples/site_finder/complex.pdb -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,864   copying pele_platform/Examples/site_finder/global.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,869   copying pele_platform/Examples/site_finder/input_custom_box.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,876   copying pele_platform/Examples/site_finder/input_folder.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,883   copying pele_platform/Examples/site_finder/input_global.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,890   copying pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,895   copying pele_platform/Examples/site_finder/input_restart.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,901   copying pele_platform/Examples/site_finder/input_skipref.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,906   copying pele_platform/Examples/site_finder/local.yaml -> build/lib/pele_platform/Examples/site_finder
2021-11-22T12:40:24,911   creating build/lib/pele_platform/Examples/tutorials
2021-11-22T12:40:24,911   creating build/lib/pele_platform/Examples/tutorials/gpcr
2021-11-22T12:40:24,914   copying pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/lib/pele_platform/Examples/tutorials/gpcr
2021-11-22T12:40:24,957   copying pele_platform/Examples/tutorials/gpcr/input.yaml -> build/lib/pele_platform/Examples/tutorials/gpcr
2021-11-22T12:40:24,964   creating build/lib/pele_platform/Examples/tutorials/induced_fit
2021-11-22T12:40:24,967   copying pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/lib/pele_platform/Examples/tutorials/induced_fit
2021-11-22T12:40:25,036   copying pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/lib/pele_platform/Examples/tutorials/induced_fit
2021-11-22T12:40:25,042   creating build/lib/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:25,045   copying pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:25,052   copying pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:25,078   copying pele_platform/Examples/tutorials/ppi/input.yaml -> build/lib/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:25,086   creating build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,090   copying pele_platform/Examples/water/complex_induced.pdb -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,109   copying pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,155   copying pele_platform/Examples/water/input_all.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,161   copying pele_platform/Examples/water/input_bs.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,168   copying pele_platform/Examples/water/input_bs_defaults.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,174   copying pele_platform/Examples/water/input_induced.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,181   copying pele_platform/Examples/water/input_lig.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,188   copying pele_platform/Examples/water/input_lig_defaults.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,195   copying pele_platform/Examples/water/input_nwaters.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,202   copying pele_platform/Examples/water/input_previous_water.yaml -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,209   copying pele_platform/Examples/water/water2_pele.conf -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,216   copying pele_platform/Examples/water/water_pele.conf -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,223   copying pele_platform/Examples/water/water_processed.pdb -> build/lib/pele_platform/Examples/water
2021-11-22T12:40:25,272   creating build/lib/pele_platform/Templates
2021-11-22T12:40:25,275   copying pele_platform/Templates/pele_template.conf -> build/lib/pele_platform/Templates
2021-11-22T12:40:25,283   copying pele_platform/Templates/solventParamsHCTOBC.txt -> build/lib/pele_platform/Templates
2021-11-22T12:40:25,297   copying pele_platform/Templates/template_adaptive.conf -> build/lib/pele_platform/Templates
2021-11-22T12:40:25,351   UPDATING build/lib/pele_platform/_version.py
2021-11-22T12:40:25,354   set build/lib/pele_platform/_version.py to '1.6.1'
2021-11-22T12:40:25,360   installing to build/bdist.linux-armv7l/wheel
2021-11-22T12:40:25,361   running install
2021-11-22T12:40:25,363   running install_lib
2021-11-22T12:40:25,371   creating build/bdist.linux-armv7l
2021-11-22T12:40:25,371   creating build/bdist.linux-armv7l/wheel
2021-11-22T12:40:25,375   creating build/bdist.linux-armv7l/wheel/pele_platform
2021-11-22T12:40:25,379   creating build/bdist.linux-armv7l/wheel/pele_platform/features
2021-11-22T12:40:25,381   copying build/lib/pele_platform/features/adaptive.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-11-22T12:40:25,388   copying build/lib/pele_platform/features/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-11-22T12:40:25,393   copying build/lib/pele_platform/features/frag.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-11-22T12:40:25,400   creating build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-11-22T12:40:25,402   copying build/lib/pele_platform/out_in/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-11-22T12:40:25,408   copying build/lib/pele_platform/out_in/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-11-22T12:40:25,414   creating build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-11-22T12:40:25,417   copying build/lib/pele_platform/Errors/custom_errors.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-11-22T12:40:25,423   copying build/lib/pele_platform/Errors/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-11-22T12:40:25,428   copying build/lib/pele_platform/_version.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-11-22T12:40:25,435   creating build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,437   copying build/lib/pele_platform/analysis/data.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,448   copying build/lib/pele_platform/analysis/plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,455   copying build/lib/pele_platform/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,461   copying build/lib/pele_platform/analysis/pdf_report.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,466   copying build/lib/pele_platform/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,480   copying build/lib/pele_platform/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,487   copying build/lib/pele_platform/analysis/interactive_plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-11-22T12:40:25,496   copying build/lib/pele_platform/main.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-11-22T12:40:25,503   creating build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-11-22T12:40:25,505   copying build/lib/pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-11-22T12:40:25,513   copying build/lib/pele_platform/enzyme_engineering/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-11-22T12:40:25,517   copying build/lib/pele_platform/plotter.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-11-22T12:40:25,530   copying build/lib/pele_platform/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-11-22T12:40:25,537   creating build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-11-22T12:40:25,539   copying build/lib/pele_platform/Templates/template_adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-11-22T12:40:25,545   copying build/lib/pele_platform/Templates/solventParamsHCTOBC.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-11-22T12:40:25,556   copying build/lib/pele_platform/Templates/pele_template.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-11-22T12:40:25,562   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2021-11-22T12:40:25,565   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,567   copying build/lib/pele_platform/Utilities/Helpers/bestStructs.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,574   copying build/lib/pele_platform/Utilities/Helpers/map_atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,581   copying build/lib/pele_platform/Utilities/Helpers/launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,587   copying build/lib/pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,593   copying build/lib/pele_platform/Utilities/Helpers/protein_wizard.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,599   copying build/lib/pele_platform/Utilities/Helpers/yaml_parser.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,607   copying build/lib/pele_platform/Utilities/Helpers/interaction_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,613   copying build/lib/pele_platform/Utilities/Helpers/plop_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,618   copying build/lib/pele_platform/Utilities/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,624   copying build/lib/pele_platform/Utilities/Helpers/randomize.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,631   copying build/lib/pele_platform/Utilities/Helpers/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,638   copying build/lib/pele_platform/Utilities/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,647   copying build/lib/pele_platform/Utilities/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,653   copying build/lib/pele_platform/Utilities/Helpers/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,663   copying build/lib/pele_platform/Utilities/Helpers/system_prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,669   copying build/lib/pele_platform/Utilities/Helpers/missing_residues.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,674   copying build/lib/pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,682   copying build/lib/pele_platform/Utilities/Helpers/ligand_conformations.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,686   copying build/lib/pele_platform/Utilities/Helpers/conda_deployment.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,693   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:25,695   copying build/lib/pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:25,703   copying build/lib/pele_platform/Utilities/Helpers/constraints/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:25,708   copying build/lib/pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-11-22T12:40:25,715   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:25,716   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:25,723   copying build/lib/pele_platform/Utilities/Helpers/Metals/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:25,727   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-11-22T12:40:25,732   copying build/lib/pele_platform/Utilities/Helpers/template_builder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-11-22T12:40:25,737   copying build/lib/pele_platform/Utilities/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2021-11-22T12:40:25,744   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-11-22T12:40:25,749   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-11-22T12:40:25,752   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-11-22T12:40:25,757   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-11-22T12:40:25,762   copying build/lib/pele_platform/Utilities/Parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-11-22T12:40:25,769   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-11-22T12:40:25,772   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-11-22T12:40:25,780   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-11-22T12:40:25,782   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-11-22T12:40:25,786   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-11-22T12:40:25,793   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-11-22T12:40:25,795   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-11-22T12:40:25,801   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-11-22T12:40:25,807   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-11-22T12:40:25,809   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-11-22T12:40:25,814   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-11-22T12:40:25,818   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-11-22T12:40:25,823   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-11-22T12:40:25,825   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-11-22T12:40:25,828   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-11-22T12:40:25,833   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-11-22T12:40:25,836   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-11-22T12:40:25,840   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-11-22T12:40:25,847   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-11-22T12:40:25,850   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-11-22T12:40:25,856   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-11-22T12:40:25,860   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-11-22T12:40:25,862   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-11-22T12:40:25,865   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-11-22T12:40:25,869   copying build/lib/pele_platform/Utilities/Parameters/parameters.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-11-22T12:40:25,876   creating build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-11-22T12:40:25,879   copying build/lib/pele_platform/constants/constants.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-11-22T12:40:25,886   copying build/lib/pele_platform/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-11-22T12:40:25,890   copying build/lib/pele_platform/constants/pele_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-11-22T12:40:25,898   creating build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,900   copying build/lib/pele_platform/Checker/valid_flags.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,906   copying build/lib/pele_platform/Checker/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,910   copying build/lib/pele_platform/Checker/pdb_checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,915   copying build/lib/pele_platform/Checker/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,919   copying build/lib/pele_platform/Checker/python_version.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,924   copying build/lib/pele_platform/Checker/environment_variables.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,929   copying build/lib/pele_platform/Checker/executable.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-11-22T12:40:25,936   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:25,938   copying build/lib/pele_platform/Frag/atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:25,942   copying build/lib/pele_platform/Frag/checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:25,946   copying build/lib/pele_platform/Frag/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:25,952   copying build/lib/pele_platform/Frag/fragments.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:25,956   copying build/lib/pele_platform/Frag/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:25,963   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-11-22T12:40:25,966   copying build/lib/pele_platform/Frag/parameters/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-11-22T12:40:25,972   copying build/lib/pele_platform/Frag/parameters/optional.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-11-22T12:40:25,978   copying build/lib/pele_platform/Frag/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-11-22T12:40:25,982   copying build/lib/pele_platform/Frag/parameters/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-11-22T12:40:25,986   copying build/lib/pele_platform/Frag/parameters/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-11-22T12:40:25,990   copying build/lib/pele_platform/Frag/parameters/files.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-11-22T12:40:25,994   copying build/lib/pele_platform/Frag/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:25,997   copying build/lib/pele_platform/Frag/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:26,004   copying build/lib/pele_platform/Frag/generative_model.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:26,009   copying build/lib/pele_platform/Frag/libraries.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-11-22T12:40:26,017   creating build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-11-22T12:40:26,019   copying build/lib/pele_platform/RNA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-11-22T12:40:26,023   copying build/lib/pele_platform/RNA/prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-11-22T12:40:26,029   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples
2021-11-22T12:40:26,032   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-11-22T12:40:26,034   copying build/lib/pele_platform/Examples/production/input.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-11-22T12:40:26,039   copying build/lib/pele_platform/Examples/production/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-11-22T12:40:26,046   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-11-22T12:40:26,048   copying build/lib/pele_platform/Examples/bias/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-11-22T12:40:26,086   copying build/lib/pele_platform/Examples/bias/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-11-22T12:40:26,095   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,099   copying build/lib/pele_platform/Examples/out_in/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,104   copying build/lib/pele_platform/Examples/out_in/input_flag_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,109   copying build/lib/pele_platform/Examples/out_in/input_default.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,114   copying build/lib/pele_platform/Examples/out_in/input_metrics.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,119   copying build/lib/pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,157   copying build/lib/pele_platform/Examples/out_in/input_auto_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,164   copying build/lib/pele_platform/Examples/out_in/input_box_center.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-11-22T12:40:26,172   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2021-11-22T12:40:26,176   copying build/lib/pele_platform/Examples/restart/restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2021-11-22T12:40:26,184   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2021-11-22T12:40:26,188   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,191   copying build/lib/pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,266   copying build/lib/pele_platform/Examples/clustering/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,272   copying build/lib/pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,342   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-11-22T12:40:26,343   copying build/lib/pele_platform/Examples/clustering/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-11-22T12:40:26,576   copying build/lib/pele_platform/Examples/clustering/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-11-22T12:40:26,582   copying build/lib/pele_platform/Examples/clustering/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,587   copying build/lib/pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,625   copying build/lib/pele_platform/Examples/clustering/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,631   copying build/lib/pele_platform/Examples/clustering/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,636   copying build/lib/pele_platform/Examples/clustering/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,641   copying build/lib/pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-11-22T12:40:26,708   copying build/lib/pele_platform/Examples/clustering/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2021-11-22T12:40:26,713   copying build/lib/pele_platform/Examples/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples
2021-11-22T12:40:26,721   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-11-22T12:40:26,725   copying build/lib/pele_platform/Examples/exit_soft/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-11-22T12:40:26,732   copying build/lib/pele_platform/Examples/exit_soft/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-11-22T12:40:26,738   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2021-11-22T12:40:26,741   copying build/lib/pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2021-11-22T12:40:26,747   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,750   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,758   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,763   copying build/lib/pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,800   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,810   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,820   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,827   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,836   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,840   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-11-22T12:40:26,845   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-11-22T12:40:26,847   copying build/lib/pele_platform/Examples/minimum_steps/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-11-22T12:40:26,851   copying build/lib/pele_platform/Examples/minimum_steps/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-11-22T12:40:26,916   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-11-22T12:40:26,919   copying build/lib/pele_platform/Examples/inputs/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-11-22T12:40:26,925   copying build/lib/pele_platform/Examples/inputs/mn4.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-11-22T12:40:26,930   copying build/lib/pele_platform/Examples/inputs/nord3.sge -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-11-22T12:40:26,936   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:26,938   copying build/lib/pele_platform/Examples/ligand_conformations/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:26,942   copying build/lib/pele_platform/Examples/ligand_conformations/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:26,946   copying build/lib/pele_platform/Examples/ligand_conformations/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:26,951   copying build/lib/pele_platform/Examples/ligand_conformations/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-11-22T12:40:26,957   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-11-22T12:40:26,960   copying build/lib/pele_platform/Examples/randomize/ligand1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-11-22T12:40:26,966   copying build/lib/pele_platform/Examples/randomize/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-11-22T12:40:27,012   copying build/lib/pele_platform/Examples/randomize/ligand3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-11-22T12:40:27,018   copying build/lib/pele_platform/Examples/randomize/ligand2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-11-22T12:40:27,024   copying build/lib/pele_platform/Examples/randomize/ref_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-11-22T12:40:27,031   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-11-22T12:40:27,034   copying build/lib/pele_platform/Examples/analysis/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-11-22T12:40:27,038   copying build/lib/pele_platform/Examples/analysis/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-11-22T12:40:27,042   copying build/lib/pele_platform/Examples/analysis/input_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-11-22T12:40:27,046   copying build/lib/pele_platform/Examples/analysis/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-11-22T12:40:27,051   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,053   copying build/lib/pele_platform/Examples/analysis/data/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,057   copying build/lib/pele_platform/Examples/analysis/data/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,061   copying build/lib/pele_platform/Examples/analysis/data/MG.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,065   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:27,067   copying build/lib/pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:27,105   copying build/lib/pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:27,145   copying build/lib/pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-11-22T12:40:27,185   copying build/lib/pele_platform/Examples/analysis/data/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,192   copying build/lib/pele_platform/Examples/analysis/data/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,198   copying build/lib/pele_platform/Examples/analysis/data/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,202   copying build/lib/pele_platform/Examples/analysis/data/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,207   copying build/lib/pele_platform/Examples/analysis/data/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,212   copying build/lib/pele_platform/Examples/analysis/data/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,218   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2021-11-22T12:40:27,222   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:27,225   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:27,231   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:27,236   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:27,242   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-11-22T12:40:27,248   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2021-11-22T12:40:27,251   copying build/lib/pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2021-11-22T12:40:27,266   copying build/lib/pele_platform/Examples/analysis/data/xtc/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2021-11-22T12:40:27,271   copying build/lib/pele_platform/Examples/analysis/data/mgz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-11-22T12:40:27,277   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2021-11-22T12:40:27,282   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2021-11-22T12:40:27,287   copying build/lib/pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2021-11-22T12:40:27,294   copying build/lib/pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2021-11-22T12:40:27,302   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:27,306   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-11-22T12:40:27,309   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-11-22T12:40:27,348   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-11-22T12:40:27,355   copying build/lib/pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:27,362   copying build/lib/pele_platform/Examples/analysis/data/output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:27,367   copying build/lib/pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-11-22T12:40:27,407   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-11-22T12:40:27,410   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-11-22T12:40:27,449   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-11-22T12:40:27,486   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output
2021-11-22T12:40:27,490   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:27,493   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:27,499   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:27,504   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:27,619   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:27,624   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-11-22T12:40:27,669   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-11-22T12:40:27,671   copying build/lib/pele_platform/Examples/pca/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-11-22T12:40:27,677   copying build/lib/pele_platform/Examples/pca/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-11-22T12:40:27,720   copying build/lib/pele_platform/Examples/pca/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-11-22T12:40:27,762   copying build/lib/pele_platform/Examples/pca/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-11-22T12:40:27,804   copying build/lib/pele_platform/Examples/pca/input_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-11-22T12:40:27,811   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:27,815   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-11-22T12:40:27,818   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-11-22T12:40:27,824   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-11-22T12:40:27,829   copying build/lib/pele_platform/Examples/interaction_restrictions/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:27,833   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:27,838   copying build/lib/pele_platform/Examples/interaction_restrictions/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:27,901   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-11-22T12:40:27,907   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials
2021-11-22T12:40:27,912   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-11-22T12:40:27,916   copying build/lib/pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-11-22T12:40:27,924   copying build/lib/pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-11-22T12:40:27,992   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-11-22T12:40:27,994   copying build/lib/pele_platform/Examples/tutorials/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-11-22T12:40:28,000   copying build/lib/pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-11-22T12:40:28,045   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:28,047   copying build/lib/pele_platform/Examples/tutorials/ppi/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:28,053   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:28,078   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-11-22T12:40:28,085   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-11-22T12:40:28,086   copying build/lib/pele_platform/Examples/global/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-11-22T12:40:28,091   copying build/lib/pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-11-22T12:40:28,095   copying build/lib/pele_platform/Examples/global/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-11-22T12:40:28,100   copying build/lib/pele_platform/Examples/global/input_inputs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-11-22T12:40:28,108   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-11-22T12:40:28,110   copying build/lib/pele_platform/Examples/Msm/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-11-22T12:40:28,116   copying build/lib/pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-11-22T12:40:28,152   copying build/lib/pele_platform/Examples/Msm/AS4_INIT.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-11-22T12:40:28,159   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-11-22T12:40:28,196   copying build/lib/pele_platform/Examples/Msm/PR_AS4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-11-22T12:40:28,234   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-11-22T12:40:28,271   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:28,273   copying build/lib/pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:28,278   copying build/lib/pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:28,285   copying build/lib/pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-11-22T12:40:28,293   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-11-22T12:40:28,299   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:28,303   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:28,309   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:28,312   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:28,382   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:28,445   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:28,507   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-11-22T12:40:28,512   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:28,518   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:28,524   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-11-22T12:40:28,529   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-11-22T12:40:28,536   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:28,538   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:28,545   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:28,547   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:28,607   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:28,669   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:28,730   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:28,790   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:28,850   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-11-22T12:40:28,856   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2021-11-22T12:40:28,859   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-11-22T12:40:28,861   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-11-22T12:40:28,867   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2021-11-22T12:40:28,871   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2021-11-22T12:40:28,876   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-11-22T12:40:28,879   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-11-22T12:40:28,887   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:28,892   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:28,894   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:28,952   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:29,012   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-11-22T12:40:29,021   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:29,029   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-11-22T12:40:29,034   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-11-22T12:40:29,037   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-11-22T12:40:29,039   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-11-22T12:40:29,045   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:29,046   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:29,158   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:29,162   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:29,166   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-11-22T12:40:29,278   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-11-22T12:40:29,284   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-11-22T12:40:29,287   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-11-22T12:40:29,289   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-11-22T12:40:29,294   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-11-22T12:40:29,299   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-11-22T12:40:29,307   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:29,309   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:29,371   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:29,431   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-11-22T12:40:29,540   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:29,543   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:29,655   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:29,660   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:29,773   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-11-22T12:40:29,780   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:29,783   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:29,846   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:29,907   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-11-22T12:40:29,969   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-11-22T12:40:29,971   copying build/lib/pele_platform/Examples/exit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-11-22T12:40:29,976   copying build/lib/pele_platform/Examples/exit/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-11-22T12:40:29,982   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:29,984   copying build/lib/pele_platform/Examples/frag/input_sim.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:29,988   copying build/lib/pele_platform/Examples/frag/1dyi_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,012   copying build/lib/pele_platform/Examples/frag/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,018   copying build/lib/pele_platform/Examples/frag/input_ai.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,023   copying build/lib/pele_platform/Examples/frag/input_fragment_atom.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,030   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2021-11-22T12:40:30,032   copying build/lib/pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2021-11-22T12:40:30,038   copying build/lib/pele_platform/Examples/frag/sequential.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,042   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,090   copying build/lib/pele_platform/Examples/frag/flags.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,096   copying build/lib/pele_platform/Examples/frag/input_lib_pdb.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,101   copying build/lib/pele_platform/Examples/frag/ligands.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,107   copying build/lib/pele_platform/Examples/frag/input_symmetry.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,113   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,162   copying build/lib/pele_platform/Examples/frag/input_core.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,168   copying build/lib/pele_platform/Examples/frag/input_lib_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,173   copying build/lib/pele_platform/Examples/frag/core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,179   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-11-22T12:40:30,181   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-11-22T12:40:30,186   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-11-22T12:40:30,190   copying build/lib/pele_platform/Examples/frag/input_point_analysis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,196   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data
2021-11-22T12:40:30,201   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1
2021-11-22T12:40:30,205   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-11-22T12:40:30,209   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-11-22T12:40:30,260   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-11-22T12:40:30,312   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:30,315   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:30,320   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:30,411   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:30,417   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-11-22T12:40:30,508   copying build/lib/pele_platform/Examples/frag/ligands_water.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,514   copying build/lib/pele_platform/Examples/frag/analysis.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,521   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,523   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,540   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,545   copying build/lib/pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,623   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,632   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,642   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,684   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,693   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,745   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,753   copying build/lib/pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,766   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,773   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,778   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,783   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,795   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,848   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-11-22T12:40:30,855   copying build/lib/pele_platform/Examples/frag/input_frag_waters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,862   copying build/lib/pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,889   copying build/lib/pele_platform/Examples/frag/input_sim_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,896   copying build/lib/pele_platform/Examples/frag/input_core_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,904   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-11-22T12:40:30,908   copying build/lib/pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-11-22T12:40:30,914   copying build/lib/pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-11-22T12:40:30,919   copying build/lib/pele_platform/Examples/frag/checker/receptor.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-11-22T12:40:30,949   copying build/lib/pele_platform/Examples/frag/amino.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-11-22T12:40:30,958   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2021-11-22T12:40:30,962   copying build/lib/pele_platform/Examples/box/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2021-11-22T12:40:30,970   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-11-22T12:40:30,972   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-11-22T12:40:30,978   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-11-22T12:40:30,982   copying build/lib/pele_platform/Examples/induced_fit/input_fast.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-11-22T12:40:30,987   copying build/lib/pele_platform/Examples/induced_fit/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-11-22T12:40:30,992   copying build/lib/pele_platform/Examples/induced_fit/input_auto_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-11-22T12:40:30,997   copying build/lib/pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-11-22T12:40:31,003   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,006   copying build/lib/pele_platform/Examples/water/input_lig_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,011   copying build/lib/pele_platform/Examples/water/input_lig.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,016   copying build/lib/pele_platform/Examples/water/input_all.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,021   copying build/lib/pele_platform/Examples/water/input_previous_water.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,025   copying build/lib/pele_platform/Examples/water/water2_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,030   copying build/lib/pele_platform/Examples/water/water_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,079   copying build/lib/pele_platform/Examples/water/input_bs_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,086   copying build/lib/pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,135   copying build/lib/pele_platform/Examples/water/complex_induced.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,156   copying build/lib/pele_platform/Examples/water/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,161   copying build/lib/pele_platform/Examples/water/input_nwaters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,167   copying build/lib/pele_platform/Examples/water/input_bs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,172   copying build/lib/pele_platform/Examples/water/water_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-11-22T12:40:31,178   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-11-22T12:40:31,180   copying build/lib/pele_platform/Examples/RNA/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-11-22T12:40:31,184   copying build/lib/pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-11-22T12:40:31,225   copying build/lib/pele_platform/Examples/RNA/5C45_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-11-22T12:40:31,267   copying build/lib/pele_platform/Examples/RNA/2l94.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-11-22T12:40:31,271   copying build/lib/pele_platform/Examples/RNA/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-11-22T12:40:31,279   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,283   copying build/lib/pele_platform/Examples/preparation/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,291   copying build/lib/pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,346   copying build/lib/pele_platform/Examples/preparation/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,353   copying build/lib/pele_platform/Examples/preparation/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,390   copying build/lib/pele_platform/Examples/preparation/parametrization_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,397   copying build/lib/pele_platform/Examples/preparation/complex_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,455   copying build/lib/pele_platform/Examples/preparation/input_nonstandard.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,462   copying build/lib/pele_platform/Examples/preparation/6qmk_correct.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-11-22T12:40:31,511   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,514   copying build/lib/pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,567   copying build/lib/pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,603   copying build/lib/pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,662   copying build/lib/pele_platform/Examples/covalent_docking/input2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,668   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,673   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,679   copying build/lib/pele_platform/Examples/covalent_docking/input3.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,684   copying build/lib/pele_platform/Examples/covalent_docking/input1.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-11-22T12:40:31,689   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-11-22T12:40:31,690   copying build/lib/pele_platform/Examples/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-11-22T12:40:31,695   copying build/lib/pele_platform/Examples/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-11-22T12:40:31,736   copying build/lib/pele_platform/Examples/gpcr/complex_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-11-22T12:40:31,779   copying build/lib/pele_platform/Examples/gpcr/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-11-22T12:40:31,785   copying build/lib/pele_platform/Examples/gpcr/input_atom_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-11-22T12:40:31,790   copying build/lib/pele_platform/Examples/gpcr/input_defaults2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-11-22T12:40:31,798   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-11-22T12:40:31,801   copying build/lib/pele_platform/Examples/Adaptive/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-11-22T12:40:31,807   copying build/lib/pele_platform/Examples/Adaptive/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-11-22T12:40:31,813   copying build/lib/pele_platform/Examples/Adaptive/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-11-22T12:40:31,823   copying build/lib/pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-11-22T12:40:31,830   copying build/lib/pele_platform/Examples/Adaptive/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-11-22T12:40:31,837   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,840   copying build/lib/pele_platform/Examples/site_finder/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,888   copying build/lib/pele_platform/Examples/site_finder/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,893   copying build/lib/pele_platform/Examples/site_finder/input_restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,899   copying build/lib/pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,905   copying build/lib/pele_platform/Examples/site_finder/input_custom_box.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,910   copying build/lib/pele_platform/Examples/site_finder/local.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,916   copying build/lib/pele_platform/Examples/site_finder/input_global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,921   copying build/lib/pele_platform/Examples/site_finder/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,926   copying build/lib/pele_platform/Examples/site_finder/global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-11-22T12:40:31,934   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:31,936   copying build/lib/pele_platform/Examples/PPI/1tnf_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:31,998   copying build/lib/pele_platform/Examples/PPI/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:32,004   copying build/lib/pele_platform/Examples/PPI/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:32,009   copying build/lib/pele_platform/Examples/PPI/1f47_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:32,032   copying build/lib/pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:32,037   copying build/lib/pele_platform/Examples/PPI/1f47_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:32,042   copying build/lib/pele_platform/Examples/PPI/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-11-22T12:40:32,048   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,050   copying build/lib/pele_platform/Examples/constraints/4qnr_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,103   copying build/lib/pele_platform/Examples/constraints/4zu9_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,216   copying build/lib/pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,222   copying build/lib/pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,227   copying build/lib/pele_platform/Examples/constraints/input_square_planar.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,232   copying build/lib/pele_platform/Examples/constraints/input_ignore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,238   copying build/lib/pele_platform/Examples/constraints/4w4o_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,270   copying build/lib/pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,274   copying build/lib/pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,314   copying build/lib/pele_platform/Examples/constraints/input_metals.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,318   copying build/lib/pele_platform/Examples/constraints/1zop.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,347   copying build/lib/pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,351   copying build/lib/pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,355   copying build/lib/pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,359   copying build/lib/pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,365   copying build/lib/pele_platform/Examples/constraints/ca_constraints.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,431   copying build/lib/pele_platform/Examples/constraints/input_external_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,437   copying build/lib/pele_platform/Examples/constraints/input_k.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,442   copying build/lib/pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,447   copying build/lib/pele_platform/Examples/constraints/input_smiles_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,453   copying build/lib/pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,458   copying build/lib/pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,462   copying build/lib/pele_platform/Examples/constraints/4w5i_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,494   copying build/lib/pele_platform/Examples/constraints/no_connects.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,499   copying build/lib/pele_platform/Examples/constraints/4l3a_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,553   copying build/lib/pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-11-22T12:40:32,560   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2021-11-22T12:40:32,563   copying build/lib/pele_platform/Examples/flags/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2021-11-22T12:40:32,570   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-11-22T12:40:32,572   copying build/lib/pele_platform/Examples/singularity/input_frag.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-11-22T12:40:32,579   copying build/lib/pele_platform/Examples/singularity/input_adaptive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-11-22T12:40:32,585   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-11-22T12:40:32,588   copying build/lib/pele_platform/Examples/rescoring/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-11-22T12:40:32,593   copying build/lib/pele_platform/Examples/rescoring/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-11-22T12:40:32,601   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,603   copying build/lib/pele_platform/Examples/checker/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,609   copying build/lib/pele_platform/Examples/checker/input_atom_string.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,614   copying build/lib/pele_platform/Examples/checker/complex2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,639   copying build/lib/pele_platform/Examples/checker/input_rotamer.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,644   copying build/lib/pele_platform/Examples/checker/multiple_simulations.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,649   copying build/lib/pele_platform/Examples/checker/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,654   copying build/lib/pele_platform/Examples/checker/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,701   copying build/lib/pele_platform/Examples/checker/input_pele_exec.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,706   copying build/lib/pele_platform/Examples/checker/input_template.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,711   copying build/lib/pele_platform/Examples/checker/input_map_atom_num.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,716   copying build/lib/pele_platform/Examples/checker/complex_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,783   copying build/lib/pele_platform/Examples/checker/input_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,789   copying build/lib/pele_platform/Examples/checker/input_env.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,794   copying build/lib/pele_platform/Examples/checker/input_underscore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,799   copying build/lib/pele_platform/Examples/checker/incompatible_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,805   copying build/lib/pele_platform/Examples/checker/negative_residues.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,810   copying build/lib/pele_platform/Examples/checker/capped_no_connects.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:32,947   copying build/lib/pele_platform/Examples/checker/capped.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:33,087   copying build/lib/pele_platform/Examples/checker/input_map_atom_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:33,093   copying build/lib/pele_platform/Examples/checker/ligand2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:33,099   copying build/lib/pele_platform/Examples/checker/input_tab.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:33,104   copying build/lib/pele_platform/Examples/checker/mapping_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-11-22T12:40:33,173   creating build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-11-22T12:40:33,176   copying build/lib/pele_platform/covalent_docking/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-11-22T12:40:33,183   copying build/lib/pele_platform/covalent_docking/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-11-22T12:40:33,189   creating build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-11-22T12:40:33,192   copying build/lib/pele_platform/gpcr/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-11-22T12:40:33,198   copying build/lib/pele_platform/gpcr/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-11-22T12:40:33,204   creating build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,206   copying build/lib/pele_platform/Adaptive/parametrizer.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,217   copying build/lib/pele_platform/Adaptive/interaction_restrictions.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,223   copying build/lib/pele_platform/Adaptive/preequilibrator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,229   copying build/lib/pele_platform/Adaptive/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,237   copying build/lib/pele_platform/Adaptive/plop_solvent.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,243   copying build/lib/pele_platform/Adaptive/plop_ligand_parametrization.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,248   copying build/lib/pele_platform/Adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,254   copying build/lib/pele_platform/Adaptive/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,259   copying build/lib/pele_platform/Adaptive/box.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,265   copying build/lib/pele_platform/Adaptive/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-11-22T12:40:33,272   creating build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-11-22T12:40:33,275   copying build/lib/pele_platform/site_finder/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-11-22T12:40:33,282   copying build/lib/pele_platform/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-11-22T12:40:33,288   creating build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-11-22T12:40:33,290   copying build/lib/pele_platform/PPI/cluster.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-11-22T12:40:33,296   copying build/lib/pele_platform/PPI/simulation_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-11-22T12:40:33,302   copying build/lib/pele_platform/PPI/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-11-22T12:40:33,308   copying build/lib/pele_platform/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-11-22T12:40:33,312   copying build/lib/pele_platform/PPI/preparation.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-11-22T12:40:33,317   running install_egg_info
2021-11-22T12:40:33,343   Copying pele_platform.egg-info to build/bdist.linux-armv7l/wheel/pele_platform-1.6.1-py3.5.egg-info
2021-11-22T12:40:33,375   running install_scripts
2021-11-22T12:40:33,621   creating build/bdist.linux-armv7l/wheel/pele_platform-1.6.1.dist-info/WHEEL
2021-11-22T12:40:51,776   Building wheel for pele-platform (setup.py): finished with status 'done'
2021-11-22T12:40:51,989   Created wheel for pele-platform: filename=pele_platform-1.6.1-py3-none-any.whl size=12609488 sha256=54fce55ef8d76b985bf74e188b670f577d37240526e4cb10a22f84182e7e6987
2021-11-22T12:40:51,990   Stored in directory: /tmp/pip-ephem-wheel-cache-x3uta74u/wheels/5a/17/95/5e40f5bf42a811dba7f1aa55d35c5bb008ab786b0b5379e7a2
2021-11-22T12:40:52,059 Successfully built pele-platform
2021-11-22T12:40:54,235 Removed build tracker: '/tmp/pip-req-tracker-91od7zmq'