2021-11-23T18:12:09,134 Created temporary directory: /tmp/pip-ephem-wheel-cache-jwfpc1ao
2021-11-23T18:12:09,137 Created temporary directory: /tmp/pip-req-tracker-ap925fyu
2021-11-23T18:12:09,138 Initialized build tracking at /tmp/pip-req-tracker-ap925fyu
2021-11-23T18:12:09,138 Created build tracker: /tmp/pip-req-tracker-ap925fyu
2021-11-23T18:12:09,138 Entered build tracker: /tmp/pip-req-tracker-ap925fyu
2021-11-23T18:12:09,139 Created temporary directory: /tmp/pip-wheel-345paffv
2021-11-23T18:12:09,169 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-23T18:12:09,172 2 location(s) to search for versions of repair-seq:
2021-11-23T18:12:09,172 * https://pypi.org/simple/repair-seq/
2021-11-23T18:12:09,172 * https://www.piwheels.org/simple/repair-seq/
2021-11-23T18:12:09,173 Fetching project page and analyzing links: https://pypi.org/simple/repair-seq/
2021-11-23T18:12:09,173 Getting page https://pypi.org/simple/repair-seq/
2021-11-23T18:12:09,175 Found index url https://pypi.org/simple
2021-11-23T18:12:09,260   Found link https://files.pythonhosted.org/packages/c4/05/0451dabc5e138dfe012fe7aeb8080e24951f88bb079c213d7f3b8be08df0/repair_seq-1.0.2.tar.gz#sha256=8ecf1dfa5193c5dafa29f2e2731d781c42195e33275edbacc167889de5f62e03 (from https://pypi.org/simple/repair-seq/) (requires-python:>=3.6), version: 1.0.2
2021-11-23T18:12:09,260 Fetching project page and analyzing links: https://www.piwheels.org/simple/repair-seq/
2021-11-23T18:12:09,261 Getting page https://www.piwheels.org/simple/repair-seq/
2021-11-23T18:12:09,261 Found index url https://www.piwheels.org/simple
2021-11-23T18:12:09,432 Skipping link: not a file: https://www.piwheels.org/simple/repair-seq/
2021-11-23T18:12:09,432 Skipping link: not a file: https://pypi.org/simple/repair-seq/
2021-11-23T18:12:09,447 Given no hashes to check 1 links for project 'repair-seq': discarding no candidates
2021-11-23T18:12:09,461 Collecting repair-seq==1.0.2
2021-11-23T18:12:09,463   Created temporary directory: /tmp/pip-unpack-t8f5luyq
2021-11-23T18:12:09,968   Downloading repair_seq-1.0.2.tar.gz (936 kB)
2021-11-23T18:12:10,397   Added repair-seq==1.0.2 from https://files.pythonhosted.org/packages/c4/05/0451dabc5e138dfe012fe7aeb8080e24951f88bb079c213d7f3b8be08df0/repair_seq-1.0.2.tar.gz#sha256=8ecf1dfa5193c5dafa29f2e2731d781c42195e33275edbacc167889de5f62e03 to build tracker '/tmp/pip-req-tracker-ap925fyu'
2021-11-23T18:12:10,399     Running setup.py (path:/tmp/pip-wheel-345paffv/repair-seq_3bcdf5317b5546bf8478bc93d92ed902/setup.py) egg_info for package repair-seq
2021-11-23T18:12:10,399     Created temporary directory: /tmp/pip-pip-egg-info-p5zz4z4z
2021-11-23T18:12:10,400     Running command python setup.py egg_info
2021-11-23T18:12:11,442     running egg_info
2021-11-23T18:12:11,445     creating /tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info
2021-11-23T18:12:11,446     writing /tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info/PKG-INFO
2021-11-23T18:12:11,449     writing dependency_links to /tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info/dependency_links.txt
2021-11-23T18:12:11,451     writing requirements to /tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info/requires.txt
2021-11-23T18:12:11,452     writing top-level names to /tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info/top_level.txt
2021-11-23T18:12:11,453     writing manifest file '/tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info/SOURCES.txt'
2021-11-23T18:12:11,800     reading manifest file '/tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info/SOURCES.txt'
2021-11-23T18:12:11,805     writing manifest file '/tmp/pip-pip-egg-info-p5zz4z4z/repair_seq.egg-info/SOURCES.txt'
2021-11-23T18:12:11,887   Source in /tmp/pip-wheel-345paffv/repair-seq_3bcdf5317b5546bf8478bc93d92ed902 has version 1.0.2, which satisfies requirement repair-seq==1.0.2 from https://files.pythonhosted.org/packages/c4/05/0451dabc5e138dfe012fe7aeb8080e24951f88bb079c213d7f3b8be08df0/repair_seq-1.0.2.tar.gz#sha256=8ecf1dfa5193c5dafa29f2e2731d781c42195e33275edbacc167889de5f62e03
2021-11-23T18:12:11,888   Removed repair-seq==1.0.2 from https://files.pythonhosted.org/packages/c4/05/0451dabc5e138dfe012fe7aeb8080e24951f88bb079c213d7f3b8be08df0/repair_seq-1.0.2.tar.gz#sha256=8ecf1dfa5193c5dafa29f2e2731d781c42195e33275edbacc167889de5f62e03 from build tracker '/tmp/pip-req-tracker-ap925fyu'
2021-11-23T18:12:11,894 Created temporary directory: /tmp/pip-unpack-rae0yk89
2021-11-23T18:12:11,895 Building wheels for collected packages: repair-seq
2021-11-23T18:12:11,900   Created temporary directory: /tmp/pip-wheel-4blf8hy_
2021-11-23T18:12:11,900   Building wheel for repair-seq (setup.py): started
2021-11-23T18:12:11,901   Destination directory: /tmp/pip-wheel-4blf8hy_
2021-11-23T18:12:11,901   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-345paffv/repair-seq_3bcdf5317b5546bf8478bc93d92ed902/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-345paffv/repair-seq_3bcdf5317b5546bf8478bc93d92ed902/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4blf8hy_
2021-11-23T18:12:12,930   running bdist_wheel
2021-11-23T18:12:12,935   running build
2021-11-23T18:12:12,935   running build_py
2021-11-23T18:12:13,064   creating build
2021-11-23T18:12:13,064   creating build/lib.linux-armv7l-3.7
2021-11-23T18:12:13,065   creating build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,066   copying repair_seq/bootstrapper.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,068   copying repair_seq/base_editor.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,070   copying repair_seq/single_end_experiment.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,072   copying repair_seq/statistics.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,074   copying repair_seq/prime_editing_layout.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,079   copying repair_seq/quantiles.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,081   copying repair_seq/pooled_layout.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,085   copying repair_seq/__init__.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,087   copying repair_seq/demux_gDNA.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,090   copying repair_seq/replicates.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,093   copying repair_seq/build_guide_specific_targets.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,095   copying repair_seq/common_sequences.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,098   copying repair_seq/arrayed_experiment_group.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,101   copying repair_seq/demux_arrayed_experiments.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,103   copying repair_seq/prime_editing_experiment.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,106   copying repair_seq/guide_library.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,109   copying repair_seq/experiment_group.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,111   copying repair_seq/demux.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,114   copying repair_seq/pooled_screen.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,120   copying repair_seq/coherence.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,123   copying repair_seq/perturb_seq.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,126   copying repair_seq/demux_for_SRA.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,128   copying repair_seq/cluster.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,132   copying repair_seq/collapse.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,134   copying repair_seq/beta_binomial.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,137   copying repair_seq/convert_outcomes.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,139   copying repair_seq/paired_end_experiment.py -> build/lib.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:13,144   running build_ext
2021-11-23T18:12:13,318   cythoning repair_seq/collapse_cython.pyx to repair_seq/collapse_cython.c
2021-11-23T18:12:19,467   building 'collapse_cython' extension
2021-11-23T18:12:19,468   creating build/temp.linux-armv7l-3.7
2021-11-23T18:12:19,469   creating build/temp.linux-armv7l-3.7/repair_seq
2021-11-23T18:12:19,469   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c repair_seq/collapse_cython.c -o build/temp.linux-armv7l-3.7/repair_seq/collapse_cython.o
2021-11-23T18:12:31,786   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/repair_seq/collapse_cython.o -o build/lib.linux-armv7l-3.7/repair_seq/collapse_cython.cpython-37m-arm-linux-gnueabihf.so
2021-11-23T18:12:31,952   running build_scripts
2021-11-23T18:12:31,953   creating build/scripts-3.7
2021-11-23T18:12:31,955   copying and adjusting repair_seq/repair-seq -> build/scripts-3.7
2021-11-23T18:12:31,956   changing mode of build/scripts-3.7/repair-seq from 644 to 755
2021-11-23T18:12:31,966   installing to build/bdist.linux-armv7l/wheel
2021-11-23T18:12:31,967   running install
2021-11-23T18:12:31,968   running install_lib
2021-11-23T18:12:31,973   creating build/bdist.linux-armv7l
2021-11-23T18:12:31,973   creating build/bdist.linux-armv7l/wheel
2021-11-23T18:12:31,976   creating build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:31,977   copying build/lib.linux-armv7l-3.7/repair_seq/bootstrapper.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:31,979   copying build/lib.linux-armv7l-3.7/repair_seq/collapse_cython.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,001   copying build/lib.linux-armv7l-3.7/repair_seq/base_editor.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,004   copying build/lib.linux-armv7l-3.7/repair_seq/single_end_experiment.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,006   copying build/lib.linux-armv7l-3.7/repair_seq/statistics.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,009   copying build/lib.linux-armv7l-3.7/repair_seq/prime_editing_layout.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,014   copying build/lib.linux-armv7l-3.7/repair_seq/quantiles.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,016   copying build/lib.linux-armv7l-3.7/repair_seq/pooled_layout.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,022   copying build/lib.linux-armv7l-3.7/repair_seq/__init__.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,025   copying build/lib.linux-armv7l-3.7/repair_seq/demux_gDNA.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,028   copying build/lib.linux-armv7l-3.7/repair_seq/replicates.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,031   copying build/lib.linux-armv7l-3.7/repair_seq/build_guide_specific_targets.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,034   copying build/lib.linux-armv7l-3.7/repair_seq/common_sequences.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,037   copying build/lib.linux-armv7l-3.7/repair_seq/arrayed_experiment_group.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,040   copying build/lib.linux-armv7l-3.7/repair_seq/demux_arrayed_experiments.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,043   copying build/lib.linux-armv7l-3.7/repair_seq/prime_editing_experiment.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,045   copying build/lib.linux-armv7l-3.7/repair_seq/guide_library.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,048   copying build/lib.linux-armv7l-3.7/repair_seq/experiment_group.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,051   copying build/lib.linux-armv7l-3.7/repair_seq/demux.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,054   copying build/lib.linux-armv7l-3.7/repair_seq/pooled_screen.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,060   copying build/lib.linux-armv7l-3.7/repair_seq/coherence.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,062   copying build/lib.linux-armv7l-3.7/repair_seq/perturb_seq.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,066   copying build/lib.linux-armv7l-3.7/repair_seq/demux_for_SRA.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,068   copying build/lib.linux-armv7l-3.7/repair_seq/cluster.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,072   copying build/lib.linux-armv7l-3.7/repair_seq/collapse.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,075   copying build/lib.linux-armv7l-3.7/repair_seq/beta_binomial.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,077   copying build/lib.linux-armv7l-3.7/repair_seq/convert_outcomes.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,080   copying build/lib.linux-armv7l-3.7/repair_seq/paired_end_experiment.py -> build/bdist.linux-armv7l/wheel/repair_seq
2021-11-23T18:12:32,082   running install_egg_info
2021-11-23T18:12:32,107   running egg_info
2021-11-23T18:12:32,108   writing repair_seq.egg-info/PKG-INFO
2021-11-23T18:12:32,110   writing dependency_links to repair_seq.egg-info/dependency_links.txt
2021-11-23T18:12:32,112   writing requirements to repair_seq.egg-info/requires.txt
2021-11-23T18:12:32,114   writing top-level names to repair_seq.egg-info/top_level.txt
2021-11-23T18:12:32,143   reading manifest file 'repair_seq.egg-info/SOURCES.txt'
2021-11-23T18:12:32,163   writing manifest file 'repair_seq.egg-info/SOURCES.txt'
2021-11-23T18:12:32,165   Copying repair_seq.egg-info to build/bdist.linux-armv7l/wheel/repair_seq-1.0.2-py3.7.egg-info
2021-11-23T18:12:32,178   running install_scripts
2021-11-23T18:12:32,208   creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.2.data
2021-11-23T18:12:32,208   creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.2.data/scripts
2021-11-23T18:12:32,209   copying build/scripts-3.7/repair-seq -> build/bdist.linux-armv7l/wheel/repair_seq-1.0.2.data/scripts
2021-11-23T18:12:32,211   changing mode of build/bdist.linux-armv7l/wheel/repair_seq-1.0.2.data/scripts/repair-seq to 755
2021-11-23T18:12:32,239   creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.2.dist-info/WHEEL
2021-11-23T18:12:32,241   creating '/tmp/pip-wheel-4blf8hy_/repair_seq-1.0.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-11-23T18:12:32,245   adding 'repair_seq/__init__.py'
2021-11-23T18:12:32,250   adding 'repair_seq/arrayed_experiment_group.py'
2021-11-23T18:12:32,252   adding 'repair_seq/base_editor.py'
2021-11-23T18:12:32,253   adding 'repair_seq/beta_binomial.py'
2021-11-23T18:12:32,255   adding 'repair_seq/bootstrapper.py'
2021-11-23T18:12:32,257   adding 'repair_seq/build_guide_specific_targets.py'
2021-11-23T18:12:32,262   adding 'repair_seq/cluster.py'
2021-11-23T18:12:32,264   adding 'repair_seq/coherence.py'
2021-11-23T18:12:32,265   adding 'repair_seq/collapse.py'
2021-11-23T18:12:32,437   adding 'repair_seq/collapse_cython.cpython-37m-arm-linux-gnueabihf.so'
2021-11-23T18:12:32,445   adding 'repair_seq/common_sequences.py'
2021-11-23T18:12:32,446   adding 'repair_seq/convert_outcomes.py'
2021-11-23T18:12:32,448   adding 'repair_seq/demux.py'
2021-11-23T18:12:32,450   adding 'repair_seq/demux_arrayed_experiments.py'
2021-11-23T18:12:32,451   adding 'repair_seq/demux_for_SRA.py'
2021-11-23T18:12:32,454   adding 'repair_seq/demux_gDNA.py'
2021-11-23T18:12:32,456   adding 'repair_seq/experiment_group.py'
2021-11-23T18:12:32,458   adding 'repair_seq/guide_library.py'
2021-11-23T18:12:32,459   adding 'repair_seq/paired_end_experiment.py'
2021-11-23T18:12:32,461   adding 'repair_seq/perturb_seq.py'
2021-11-23T18:12:32,474   adding 'repair_seq/pooled_layout.py'
2021-11-23T18:12:32,488   adding 'repair_seq/pooled_screen.py'
2021-11-23T18:12:32,491   adding 'repair_seq/prime_editing_experiment.py'
2021-11-23T18:12:32,501   adding 'repair_seq/prime_editing_layout.py'
2021-11-23T18:12:32,504   adding 'repair_seq/quantiles.py'
2021-11-23T18:12:32,507   adding 'repair_seq/replicates.py'
2021-11-23T18:12:32,509   adding 'repair_seq/single_end_experiment.py'
2021-11-23T18:12:32,510   adding 'repair_seq/statistics.py'
2021-11-23T18:12:32,513   adding 'repair_seq-1.0.2.data/scripts/repair-seq'
2021-11-23T18:12:32,515   adding 'repair_seq-1.0.2.dist-info/METADATA'
2021-11-23T18:12:32,516   adding 'repair_seq-1.0.2.dist-info/WHEEL'
2021-11-23T18:12:32,517   adding 'repair_seq-1.0.2.dist-info/top_level.txt'
2021-11-23T18:12:32,517   adding 'repair_seq-1.0.2.dist-info/RECORD'
2021-11-23T18:12:32,524   removing build/bdist.linux-armv7l/wheel
2021-11-23T18:12:32,807   Building wheel for repair-seq (setup.py): finished with status 'done'
2021-11-23T18:12:32,815   Created wheel for repair-seq: filename=repair_seq-1.0.2-cp37-cp37m-linux_armv7l.whl size=434697 sha256=3234e29f279366df4210cdd49f2c59263c1fc2e1284cb0f4eb70e91d6dfc0797
2021-11-23T18:12:32,815   Stored in directory: /tmp/pip-ephem-wheel-cache-jwfpc1ao/wheels/8c/af/d5/725fcdc566614107e28d974835b46b2c9c514e8a25f50ce1cc
2021-11-23T18:12:32,828 Successfully built repair-seq
2021-11-23T18:12:32,847 Removed build tracker: '/tmp/pip-req-tracker-ap925fyu'