2021-11-24T08:51:28,805 Created temporary directory: /tmp/pip-ephem-wheel-cache-pb_rpafr
2021-11-24T08:51:28,808 Created temporary directory: /tmp/pip-req-tracker-1sewaijp
2021-11-24T08:51:28,809 Initialized build tracking at /tmp/pip-req-tracker-1sewaijp
2021-11-24T08:51:28,809 Created build tracker: /tmp/pip-req-tracker-1sewaijp
2021-11-24T08:51:28,809 Entered build tracker: /tmp/pip-req-tracker-1sewaijp
2021-11-24T08:51:28,810 Created temporary directory: /tmp/pip-wheel-lckbcew7
2021-11-24T08:51:28,839 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-24T08:51:28,842 2 location(s) to search for versions of stereopy:
2021-11-24T08:51:28,842 * https://pypi.org/simple/stereopy/
2021-11-24T08:51:28,842 * https://www.piwheels.org/simple/stereopy/
2021-11-24T08:51:28,843 Fetching project page and analyzing links: https://pypi.org/simple/stereopy/
2021-11-24T08:51:28,843 Getting page https://pypi.org/simple/stereopy/
2021-11-24T08:51:28,845 Found index url https://pypi.org/simple
2021-11-24T08:51:28,932   Found link https://files.pythonhosted.org/packages/ba/e8/211af80a80404175bc1fd16031e19187a8f9f30bbbf83ef798b805bcbfa8/stereopy-0.1.tar.gz#sha256=618b0c895b568f307841c4b6e95448eb73cc56ad5df3b5aff48261dc8a4eb24b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1
2021-11-24T08:51:28,933   Found link https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1.9
2021-11-24T08:51:28,933   Found link https://files.pythonhosted.org/packages/54/d5/44997684dbd629b1d1b6456fd36c6c8a469ef33fd42840b3610b3cc130ea/stereopy-0.2.0.tar.gz#sha256=17d9332696faf468d354a87d2ba78027fc3ebd023dcba9f1ebd0c9cff418e99e (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.0
2021-11-24T08:51:28,934   Found link https://files.pythonhosted.org/packages/16/63/f1b3f6cc029841596d2ab044092e8f272e68fb17590c72a6acb49fd9522f/stereopy-0.2.1.tar.gz#sha256=0a085a665f59cb2580b0f89333ca29a4d8cd27e26b9f945b683e5c52bb3a04d3 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.1
2021-11-24T08:51:28,934   Found link https://files.pythonhosted.org/packages/e4/e7/1941f9a5646ce28f1a3ca8112eb6b1c243a296e215de176a94a2e626c608/stereopy-0.2.1.1.tar.gz#sha256=c5a2e2d8cd98e0ebbd928642c4c85c8dfe223b6e26ccb85bd6675bf206353a32 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.1.1
2021-11-24T08:51:28,935 Fetching project page and analyzing links: https://www.piwheels.org/simple/stereopy/
2021-11-24T08:51:28,935 Getting page https://www.piwheels.org/simple/stereopy/
2021-11-24T08:51:28,936 Found index url https://www.piwheels.org/simple
2021-11-24T08:51:29,103   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1-py3-none-any.whl#sha256=1436faf8dcf176e53adce94e2bc87792de7d4cdaaed317c408128bc9daa5e231 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2021-11-24T08:51:29,103   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1.9-py3-none-any.whl#sha256=9786a21d45274a8ed729134a2a5fa7379701020aa314d693fc95f4cca2a91e75 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2021-11-24T08:51:29,104   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.0-py3-none-any.whl#sha256=ae14c63aea986a54218b9fed56b879d0a97082db8a4f6fadc91a319e0ce90c8f (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2021-11-24T08:51:29,104   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.1-py3-none-any.whl#sha256=cf71efeac7cafa9bff7c3a22c48c80c49cdd789556030cddb0f42576b578642b (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2021-11-24T08:51:29,104 Skipping link: not a file: https://www.piwheels.org/simple/stereopy/
2021-11-24T08:51:29,104 Skipping link: not a file: https://pypi.org/simple/stereopy/
2021-11-24T08:51:29,119 Given no hashes to check 1 links for project 'stereopy': discarding no candidates
2021-11-24T08:51:29,134 Collecting stereopy==0.2.1.1
2021-11-24T08:51:29,136   Created temporary directory: /tmp/pip-unpack-j3fwrhe5
2021-11-24T08:51:30,824   Downloading stereopy-0.2.1.1.tar.gz (16.5 MB)
2021-11-24T08:51:34,213   Added stereopy==0.2.1.1 from https://files.pythonhosted.org/packages/e4/e7/1941f9a5646ce28f1a3ca8112eb6b1c243a296e215de176a94a2e626c608/stereopy-0.2.1.1.tar.gz#sha256=c5a2e2d8cd98e0ebbd928642c4c85c8dfe223b6e26ccb85bd6675bf206353a32 to build tracker '/tmp/pip-req-tracker-1sewaijp'
2021-11-24T08:51:34,214     Running setup.py (path:/tmp/pip-wheel-lckbcew7/stereopy_9645e8c3ecc248e283e6cdb75b0f2314/setup.py) egg_info for package stereopy
2021-11-24T08:51:34,215     Created temporary directory: /tmp/pip-pip-egg-info-8g88d7sn
2021-11-24T08:51:34,215     Running command python setup.py egg_info
2021-11-24T10:52:43,215     running egg_info
2021-11-24T10:52:43,218     creating /tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info
2021-11-24T10:52:43,219     writing /tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info/PKG-INFO
2021-11-24T10:52:43,221     writing dependency_links to /tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info/dependency_links.txt
2021-11-24T10:52:43,223     writing requirements to /tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info/requires.txt
2021-11-24T10:52:43,224     writing top-level names to /tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info/top_level.txt
2021-11-24T10:52:43,226     writing manifest file '/tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info/SOURCES.txt'
2021-11-24T10:52:43,431     listing git files failed - pretending there aren't any
2021-11-24T10:52:43,447     reading manifest file '/tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info/SOURCES.txt'
2021-11-24T10:52:43,449     adding license file 'LICENSE'
2021-11-24T10:52:43,457     writing manifest file '/tmp/pip-pip-egg-info-8g88d7sn/stereopy.egg-info/SOURCES.txt'
2021-11-24T10:52:44,805     Defaulting to user installation because normal site-packages is not writeable
2021-11-24T10:52:45,034     Collecting git+https://github.com/yoseflab/Hotspot.git
2021-11-24T10:52:45,037       Cloning https://github.com/yoseflab/Hotspot.git to /tmp/pip-req-build-ajwrzvix
2021-11-24T10:52:45,038       Running command git clone -q https://github.com/yoseflab/Hotspot.git /tmp/pip-req-build-ajwrzvix
2021-11-24T10:52:45,159       fatal: transport 'https' not allowed
2021-11-24T10:52:45,185     WARNING: Discarding git+https://github.com/yoseflab/Hotspot.git. Command errored out with exit status 128: git clone -q https://github.com/yoseflab/Hotspot.git /tmp/pip-req-build-ajwrzvix Check the logs for full command output.
2021-11-24T10:52:45,186     ERROR: Command errored out with exit status 128: git clone -q https://github.com/yoseflab/Hotspot.git /tmp/pip-req-build-ajwrzvix Check the logs for full command output.
2021-11-24T10:52:45,197     WARNING: You are using pip version 21.1.3; however, version 21.3.1 is available.
2021-11-24T10:52:45,198     You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command.
2021-11-24T10:52:45,336     install hotspot from git, command: pip install git+https://github.com/yoseflab/Hotspot.git
2021-11-24T10:52:45,423   Source in /tmp/pip-wheel-lckbcew7/stereopy_9645e8c3ecc248e283e6cdb75b0f2314 has version 0.2.1.1, which satisfies requirement stereopy==0.2.1.1 from https://files.pythonhosted.org/packages/e4/e7/1941f9a5646ce28f1a3ca8112eb6b1c243a296e215de176a94a2e626c608/stereopy-0.2.1.1.tar.gz#sha256=c5a2e2d8cd98e0ebbd928642c4c85c8dfe223b6e26ccb85bd6675bf206353a32
2021-11-24T10:52:45,424   Removed stereopy==0.2.1.1 from https://files.pythonhosted.org/packages/e4/e7/1941f9a5646ce28f1a3ca8112eb6b1c243a296e215de176a94a2e626c608/stereopy-0.2.1.1.tar.gz#sha256=c5a2e2d8cd98e0ebbd928642c4c85c8dfe223b6e26ccb85bd6675bf206353a32 from build tracker '/tmp/pip-req-tracker-1sewaijp'
2021-11-24T10:52:45,430 Created temporary directory: /tmp/pip-unpack-ggb2y0tn
2021-11-24T10:52:45,431 Building wheels for collected packages: stereopy
2021-11-24T10:52:45,435   Created temporary directory: /tmp/pip-wheel-nv_q9z3p
2021-11-24T10:52:45,436   Building wheel for stereopy (setup.py): started
2021-11-24T10:52:45,436   Destination directory: /tmp/pip-wheel-nv_q9z3p
2021-11-24T10:52:45,436   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-lckbcew7/stereopy_9645e8c3ecc248e283e6cdb75b0f2314/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-lckbcew7/stereopy_9645e8c3ecc248e283e6cdb75b0f2314/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nv_q9z3p
2021-11-24T10:52:53,553   running bdist_wheel
2021-11-24T10:52:53,558   running build
2021-11-24T10:52:53,559   running build_py
2021-11-24T10:52:53,692   creating build
2021-11-24T10:52:53,693   creating build/lib
2021-11-24T10:52:53,693   creating build/lib/tests
2021-11-24T10:52:53,695   copying tests/test_data_helper.py -> build/lib/tests
2021-11-24T10:52:53,697   copying tests/__init__.py -> build/lib/tests
2021-11-24T10:52:53,699   copying tests/test_qc.py -> build/lib/tests
2021-11-24T10:52:53,701   copying tests/test_image_pyramid.py -> build/lib/tests
2021-11-24T10:52:53,703   copying tests/test_clustering.py -> build/lib/tests
2021-11-24T10:52:53,705   copying tests/test_interactive_scatter.py -> build/lib/tests
2021-11-24T10:52:53,707   copying tests/test_tools.py -> build/lib/tests
2021-11-24T10:52:53,709   copying tests/test_spatial_pattern.py -> build/lib/tests
2021-11-24T10:52:53,712   copying tests/test_filter.py -> build/lib/tests
2021-11-24T10:52:53,714   copying tests/test_find_markers.py -> build/lib/tests
2021-11-24T10:52:53,717   copying tests/test_spatial_lag.py -> build/lib/tests
2021-11-24T10:52:53,719   copying tests/test_stereo_exp_data.py -> build/lib/tests
2021-11-24T10:52:53,721   copying tests/test_reader.py -> build/lib/tests
2021-11-24T10:52:53,724   copying tests/test_gsea.py -> build/lib/tests
2021-11-24T10:52:53,726   copying tests/data_parse.py -> build/lib/tests
2021-11-24T10:52:53,729   copying tests/test_pattern_score.py -> build/lib/tests
2021-11-24T10:52:53,732   copying tests/test_normalize.py -> build/lib/tests
2021-11-24T10:52:53,734   copying tests/test_plots.py -> build/lib/tests
2021-11-24T10:52:53,737   copying tests/test_cell_type_anno.py -> build/lib/tests
2021-11-24T10:52:53,739   copying tests/test_segment.py -> build/lib/tests
2021-11-24T10:52:53,742   copying tests/test_writer.py -> build/lib/tests
2021-11-24T10:52:53,744   copying tests/test_dim_reduce.py -> build/lib/tests
2021-11-24T10:52:53,747   copying tests/test_sc_transform.py -> build/lib/tests
2021-11-24T10:52:53,749   copying tests/test_hvgs.py -> build/lib/tests
2021-11-24T10:52:53,753   creating build/lib/stereo
2021-11-24T10:52:53,753   copying stereo/__init__.py -> build/lib/stereo
2021-11-24T10:52:53,756   copying stereo/config.py -> build/lib/stereo
2021-11-24T10:52:53,759   copying stereo/log_manager.py -> build/lib/stereo
2021-11-24T10:52:53,763   creating build/lib/stereo/tools
2021-11-24T10:52:53,764   copying stereo/tools/find_markers.py -> build/lib/stereo/tools
2021-11-24T10:52:53,768   copying stereo/tools/__init__.py -> build/lib/stereo/tools
2021-11-24T10:52:53,770   copying stereo/tools/dim_reduce.py -> build/lib/stereo/tools
2021-11-24T10:52:53,773   copying stereo/tools/highly_variable_genes.py -> build/lib/stereo/tools
2021-11-24T10:52:53,776   copying stereo/tools/spatial_lag.py -> build/lib/stereo/tools
2021-11-24T10:52:53,780   copying stereo/tools/clustering.py -> build/lib/stereo/tools
2021-11-24T10:52:53,783   copying stereo/tools/spatial_pattern_score.py -> build/lib/stereo/tools
2021-11-24T10:52:53,785   copying stereo/tools/cell_type_anno.py -> build/lib/stereo/tools
2021-11-24T10:52:53,788   copying stereo/tools/cluster.py -> build/lib/stereo/tools
2021-11-24T10:52:53,793   creating build/lib/stereo/algorithm
2021-11-24T10:52:53,794   copying stereo/algorithm/__init__.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,796   copying stereo/algorithm/dim_reduce.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,799   copying stereo/algorithm/mannwhitneyu.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,802   copying stereo/algorithm/_louvain.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,805   copying stereo/algorithm/highly_variable_genes.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,809   copying stereo/algorithm/spatial_hotspot.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,811   copying stereo/algorithm/statistics.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,814   copying stereo/algorithm/phenograph.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,816   copying stereo/algorithm/normalization.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,819   copying stereo/algorithm/spatial_pattern_score.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,821   copying stereo/algorithm/neighbors.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,825   copying stereo/algorithm/leiden.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,827   copying stereo/algorithm/scenic.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,830   copying stereo/algorithm/umap.py -> build/lib/stereo/algorithm
2021-11-24T10:52:53,834   creating build/lib/stereo/plots
2021-11-24T10:52:53,835   copying stereo/plots/__init__.py -> build/lib/stereo/plots
2021-11-24T10:52:53,838   copying stereo/plots/marker_genes.py -> build/lib/stereo/plots
2021-11-24T10:52:53,841   copying stereo/plots/plot_collection.py -> build/lib/stereo/plots
2021-11-24T10:52:53,845   copying stereo/plots/scatter.py -> build/lib/stereo/plots
2021-11-24T10:52:53,849   copying stereo/plots/violin.py -> build/lib/stereo/plots
2021-11-24T10:52:53,852   creating build/lib/stereo/image
2021-11-24T10:52:53,853   copying stereo/image/__init__.py -> build/lib/stereo/image
2021-11-24T10:52:53,855   copying stereo/image/pyramid.py -> build/lib/stereo/image
2021-11-24T10:52:53,859   creating build/lib/stereo/utils
2021-11-24T10:52:53,860   copying stereo/utils/hvg_utils.py -> build/lib/stereo/utils
2021-11-24T10:52:53,863   copying stereo/utils/__init__.py -> build/lib/stereo/utils
2021-11-24T10:52:53,866   copying stereo/utils/correlation.py -> build/lib/stereo/utils
2021-11-24T10:52:53,868   copying stereo/utils/spmatrix_helper.py -> build/lib/stereo/utils
2021-11-24T10:52:53,871   copying stereo/utils/data_helper.py -> build/lib/stereo/utils
2021-11-24T10:52:53,875   creating build/lib/stereo/core
2021-11-24T10:52:53,876   copying stereo/core/__init__.py -> build/lib/stereo/core
2021-11-24T10:52:53,878   copying stereo/core/gene.py -> build/lib/stereo/core
2021-11-24T10:52:53,881   copying stereo/core/stereo_exp_data.py -> build/lib/stereo/core
2021-11-24T10:52:53,884   copying stereo/core/stereo_result.py -> build/lib/stereo/core
2021-11-24T10:52:53,887   copying stereo/core/st_pipeline.py -> build/lib/stereo/core
2021-11-24T10:52:53,892   copying stereo/core/tool_base.py -> build/lib/stereo/core
2021-11-24T10:52:53,895   copying stereo/core/data.py -> build/lib/stereo/core
2021-11-24T10:52:53,900   copying stereo/core/cell.py -> build/lib/stereo/core
2021-11-24T10:52:53,904   creating build/lib/stereo/io
2021-11-24T10:52:53,905   copying stereo/io/__init__.py -> build/lib/stereo/io
2021-11-24T10:52:53,908   copying stereo/io/h5ad.py -> build/lib/stereo/io
2021-11-24T10:52:53,911   copying stereo/io/writer.py -> build/lib/stereo/io
2021-11-24T10:52:53,914   copying stereo/io/reader.py -> build/lib/stereo/io
2021-11-24T10:52:53,918   copying stereo/io/gef.py -> build/lib/stereo/io
2021-11-24T10:52:53,922   creating build/lib/stereo/preprocess
2021-11-24T10:52:53,923   copying stereo/preprocess/__init__.py -> build/lib/stereo/preprocess
2021-11-24T10:52:53,926   copying stereo/preprocess/normalize.py -> build/lib/stereo/preprocess
2021-11-24T10:52:53,929   copying stereo/preprocess/sc_transform.py -> build/lib/stereo/preprocess
2021-11-24T10:52:53,932   copying stereo/preprocess/filter.py -> build/lib/stereo/preprocess
2021-11-24T10:52:53,935   copying stereo/preprocess/qc.py -> build/lib/stereo/preprocess
2021-11-24T10:52:53,939   creating build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,940   copying stereo/algorithm/pysctransform/__init__.py -> build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,943   copying stereo/algorithm/pysctransform/fit.py -> build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,946   copying stereo/algorithm/pysctransform/pysctransform.py -> build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,951   copying stereo/algorithm/pysctransform/plotting.py -> build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,954   copying stereo/algorithm/pysctransform/jax_bfgs.py -> build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,957   copying stereo/algorithm/pysctransform/r_bw.py -> build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,960   copying stereo/algorithm/pysctransform/fit_glmgp.py -> build/lib/stereo/algorithm/pysctransform
2021-11-24T10:52:53,963   creating build/lib/stereo/plots/interact_plot
2021-11-24T10:52:53,964   copying stereo/plots/interact_plot/__init__.py -> build/lib/stereo/plots/interact_plot
2021-11-24T10:52:53,967   copying stereo/plots/interact_plot/poly_selection.py -> build/lib/stereo/plots/interact_plot
2021-11-24T10:52:53,970   copying stereo/plots/interact_plot/spatial_cluster.py -> build/lib/stereo/plots/interact_plot
2021-11-24T10:52:53,973   copying stereo/plots/interact_plot/interactive_scatter.py -> build/lib/stereo/plots/interact_plot
2021-11-24T10:52:53,977   creating build/lib/stereo/plots/_plot_basic
2021-11-24T10:52:53,979   copying stereo/plots/_plot_basic/app.py -> build/lib/stereo/plots/_plot_basic
2021-11-24T10:52:53,981   copying stereo/plots/_plot_basic/__init__.py -> build/lib/stereo/plots/_plot_basic
2021-11-24T10:52:53,984   copying stereo/plots/_plot_basic/heatmap_plt.py -> build/lib/stereo/plots/_plot_basic
2021-11-24T10:52:53,987   copying stereo/plots/_plot_basic/get_stereo_data.py -> build/lib/stereo/plots/_plot_basic
2021-11-24T10:52:53,991   creating build/lib/stereo/image/segmentation
2021-11-24T10:52:53,992   copying stereo/image/segmentation/__init__.py -> build/lib/stereo/image/segmentation
2021-11-24T10:52:53,994   copying stereo/image/segmentation/segment.py -> build/lib/stereo/image/segmentation
2021-11-24T10:52:53,998   creating build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:53,999   copying stereo/image/segmentation/seg_utils/tissue_seg.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,002   copying stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,006   copying stereo/image/segmentation/seg_utils/__init__.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,007   copying stereo/image/segmentation/seg_utils/utils.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,011   copying stereo/image/segmentation/seg_utils/grade.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,015   copying stereo/image/segmentation/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,019   copying stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,021   copying stereo/image/segmentation/seg_utils/image.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,024   copying stereo/image/segmentation/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,027   running egg_info
2021-11-24T10:52:54,031   writing stereopy.egg-info/PKG-INFO
2021-11-24T10:52:54,033   writing dependency_links to stereopy.egg-info/dependency_links.txt
2021-11-24T10:52:54,035   writing requirements to stereopy.egg-info/requires.txt
2021-11-24T10:52:54,037   writing top-level names to stereopy.egg-info/top_level.txt
2021-11-24T10:52:54,080   listing git files failed - pretending there aren't any
2021-11-24T10:52:54,092   reading manifest file 'stereopy.egg-info/SOURCES.txt'
2021-11-24T10:52:54,105   adding license file 'LICENSE'
2021-11-24T10:52:54,116   writing manifest file 'stereopy.egg-info/SOURCES.txt'
2021-11-24T10:52:54,121   copying tests/test_sc_transfrom.ipynb -> build/lib/tests
2021-11-24T10:52:54,281   installing to build/bdist.linux-armv7l/wheel
2021-11-24T10:52:54,282   running install
2021-11-24T10:52:54,283   running install_lib
2021-11-24T10:52:54,286   creating build/bdist.linux-armv7l
2021-11-24T10:52:54,287   creating build/bdist.linux-armv7l/wheel
2021-11-24T10:52:54,289   creating build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,290   copying build/lib/tests/test_data_helper.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,292   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,293   copying build/lib/tests/test_qc.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,295   copying build/lib/tests/test_image_pyramid.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,297   copying build/lib/tests/test_clustering.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,299   copying build/lib/tests/test_interactive_scatter.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,301   copying build/lib/tests/test_tools.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,303   copying build/lib/tests/test_spatial_pattern.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,304   copying build/lib/tests/test_filter.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,306   copying build/lib/tests/test_find_markers.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,309   copying build/lib/tests/test_spatial_lag.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,310   copying build/lib/tests/test_stereo_exp_data.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,312   copying build/lib/tests/test_reader.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,314   copying build/lib/tests/test_gsea.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,316   copying build/lib/tests/data_parse.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,319   copying build/lib/tests/test_pattern_score.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,321   copying build/lib/tests/test_normalize.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,323   copying build/lib/tests/test_plots.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,325   copying build/lib/tests/test_cell_type_anno.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,327   copying build/lib/tests/test_segment.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,328   copying build/lib/tests/test_writer.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,330   copying build/lib/tests/test_dim_reduce.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,332   copying build/lib/tests/test_sc_transform.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,334   copying build/lib/tests/test_hvgs.py -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,336   copying build/lib/tests/test_sc_transfrom.ipynb -> build/bdist.linux-armv7l/wheel/tests
2021-11-24T10:52:54,434   creating build/bdist.linux-armv7l/wheel/stereo
2021-11-24T10:52:54,435   creating build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,436   copying build/lib/stereo/tools/find_markers.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,439   copying build/lib/stereo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,441   copying build/lib/stereo/tools/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,443   copying build/lib/stereo/tools/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,445   copying build/lib/stereo/tools/spatial_lag.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,448   copying build/lib/stereo/tools/clustering.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,450   copying build/lib/stereo/tools/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,453   copying build/lib/stereo/tools/cell_type_anno.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,456   copying build/lib/stereo/tools/cluster.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2021-11-24T10:52:54,459   copying build/lib/stereo/__init__.py -> build/bdist.linux-armv7l/wheel/stereo
2021-11-24T10:52:54,461   copying build/lib/stereo/config.py -> build/bdist.linux-armv7l/wheel/stereo
2021-11-24T10:52:54,465   creating build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,466   copying build/lib/stereo/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,469   copying build/lib/stereo/algorithm/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,471   copying build/lib/stereo/algorithm/mannwhitneyu.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,475   copying build/lib/stereo/algorithm/_louvain.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,478   copying build/lib/stereo/algorithm/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,481   copying build/lib/stereo/algorithm/spatial_hotspot.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,483   copying build/lib/stereo/algorithm/statistics.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,486   creating build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,487   copying build/lib/stereo/algorithm/pysctransform/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,489   copying build/lib/stereo/algorithm/pysctransform/fit.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,492   copying build/lib/stereo/algorithm/pysctransform/pysctransform.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,495   copying build/lib/stereo/algorithm/pysctransform/plotting.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,498   copying build/lib/stereo/algorithm/pysctransform/jax_bfgs.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,500   copying build/lib/stereo/algorithm/pysctransform/r_bw.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,502   copying build/lib/stereo/algorithm/pysctransform/fit_glmgp.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2021-11-24T10:52:54,504   copying build/lib/stereo/algorithm/phenograph.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,506   copying build/lib/stereo/algorithm/normalization.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,509   copying build/lib/stereo/algorithm/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,511   copying build/lib/stereo/algorithm/neighbors.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,514   copying build/lib/stereo/algorithm/leiden.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,516   copying build/lib/stereo/algorithm/scenic.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,518   copying build/lib/stereo/algorithm/umap.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2021-11-24T10:52:54,521   creating build/bdist.linux-armv7l/wheel/stereo/plots
2021-11-24T10:52:54,522   copying build/lib/stereo/plots/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-11-24T10:52:54,524   copying build/lib/stereo/plots/marker_genes.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-11-24T10:52:54,527   copying build/lib/stereo/plots/plot_collection.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-11-24T10:52:54,531   creating build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-11-24T10:52:54,532   copying build/lib/stereo/plots/interact_plot/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-11-24T10:52:54,534   copying build/lib/stereo/plots/interact_plot/poly_selection.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-11-24T10:52:54,536   copying build/lib/stereo/plots/interact_plot/spatial_cluster.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-11-24T10:52:54,538   copying build/lib/stereo/plots/interact_plot/interactive_scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2021-11-24T10:52:54,540   copying build/lib/stereo/plots/scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-11-24T10:52:54,544   creating build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-11-24T10:52:54,545   copying build/lib/stereo/plots/_plot_basic/app.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-11-24T10:52:54,547   copying build/lib/stereo/plots/_plot_basic/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-11-24T10:52:54,549   copying build/lib/stereo/plots/_plot_basic/heatmap_plt.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-11-24T10:52:54,552   copying build/lib/stereo/plots/_plot_basic/get_stereo_data.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2021-11-24T10:52:54,554   copying build/lib/stereo/plots/violin.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2021-11-24T10:52:54,556   copying build/lib/stereo/log_manager.py -> build/bdist.linux-armv7l/wheel/stereo
2021-11-24T10:52:54,559   creating build/bdist.linux-armv7l/wheel/stereo/image
2021-11-24T10:52:54,560   copying build/lib/stereo/image/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image
2021-11-24T10:52:54,562   copying build/lib/stereo/image/pyramid.py -> build/bdist.linux-armv7l/wheel/stereo/image
2021-11-24T10:52:54,564   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2021-11-24T10:52:54,565   copying build/lib/stereo/image/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2021-11-24T10:52:54,567   copying build/lib/stereo/image/segmentation/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2021-11-24T10:52:54,570   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,571   copying build/lib/stereo/image/segmentation/seg_utils/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,573   copying build/lib/stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,576   copying build/lib/stereo/image/segmentation/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,578   copying build/lib/stereo/image/segmentation/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,581   copying build/lib/stereo/image/segmentation/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,583   copying build/lib/stereo/image/segmentation/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,586   copying build/lib/stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,588   copying build/lib/stereo/image/segmentation/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,590   copying build/lib/stereo/image/segmentation/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2021-11-24T10:52:54,593   creating build/bdist.linux-armv7l/wheel/stereo/utils
2021-11-24T10:52:54,594   copying build/lib/stereo/utils/hvg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-11-24T10:52:54,597   copying build/lib/stereo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-11-24T10:52:54,599   copying build/lib/stereo/utils/correlation.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-11-24T10:52:54,601   copying build/lib/stereo/utils/spmatrix_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-11-24T10:52:54,603   copying build/lib/stereo/utils/data_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2021-11-24T10:52:54,606   creating build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,607   copying build/lib/stereo/core/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,609   copying build/lib/stereo/core/gene.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,611   copying build/lib/stereo/core/stereo_exp_data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,614   copying build/lib/stereo/core/stereo_result.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,616   copying build/lib/stereo/core/st_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,619   copying build/lib/stereo/core/tool_base.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,621   copying build/lib/stereo/core/data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,623   copying build/lib/stereo/core/cell.py -> build/bdist.linux-armv7l/wheel/stereo/core
2021-11-24T10:52:54,626   creating build/bdist.linux-armv7l/wheel/stereo/io
2021-11-24T10:52:54,627   copying build/lib/stereo/io/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-11-24T10:52:54,629   copying build/lib/stereo/io/h5ad.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-11-24T10:52:54,632   copying build/lib/stereo/io/writer.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-11-24T10:52:54,634   copying build/lib/stereo/io/reader.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-11-24T10:52:54,637   copying build/lib/stereo/io/gef.py -> build/bdist.linux-armv7l/wheel/stereo/io
2021-11-24T10:52:54,640   creating build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-11-24T10:52:54,640   copying build/lib/stereo/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-11-24T10:52:54,642   copying build/lib/stereo/preprocess/normalize.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-11-24T10:52:54,644   copying build/lib/stereo/preprocess/sc_transform.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-11-24T10:52:54,647   copying build/lib/stereo/preprocess/filter.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-11-24T10:52:54,649   copying build/lib/stereo/preprocess/qc.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2021-11-24T10:52:54,651   running install_egg_info
2021-11-24T10:52:54,656   Copying stereopy.egg-info to build/bdist.linux-armv7l/wheel/stereopy-0.2.1.1-py3.7.egg-info
2021-11-24T10:52:54,667   running install_scripts
2021-11-24T10:52:54,812   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-11-24T10:52:54,817   creating build/bdist.linux-armv7l/wheel/stereopy-0.2.1.1.dist-info/WHEEL
2021-11-24T10:52:54,819   creating '/tmp/pip-wheel-nv_q9z3p/stereopy-0.2.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-11-24T10:52:54,822   adding 'stereo/__init__.py'
2021-11-24T10:52:54,824   adding 'stereo/config.py'
2021-11-24T10:52:54,825   adding 'stereo/log_manager.py'
2021-11-24T10:52:54,828   adding 'stereo/algorithm/__init__.py'
2021-11-24T10:52:54,829   adding 'stereo/algorithm/_louvain.py'
2021-11-24T10:52:54,831   adding 'stereo/algorithm/dim_reduce.py'
2021-11-24T10:52:54,833   adding 'stereo/algorithm/highly_variable_genes.py'
2021-11-24T10:52:54,836   adding 'stereo/algorithm/leiden.py'
2021-11-24T10:52:54,838   adding 'stereo/algorithm/mannwhitneyu.py'
2021-11-24T10:52:54,841   adding 'stereo/algorithm/neighbors.py'
2021-11-24T10:52:54,843   adding 'stereo/algorithm/normalization.py'
2021-11-24T10:52:54,844   adding 'stereo/algorithm/phenograph.py'
2021-11-24T10:52:54,846   adding 'stereo/algorithm/scenic.py'
2021-11-24T10:52:54,847   adding 'stereo/algorithm/spatial_hotspot.py'
2021-11-24T10:52:54,849   adding 'stereo/algorithm/spatial_pattern_score.py'
2021-11-24T10:52:54,850   adding 'stereo/algorithm/statistics.py'
2021-11-24T10:52:54,852   adding 'stereo/algorithm/umap.py'
2021-11-24T10:52:54,854   adding 'stereo/algorithm/pysctransform/__init__.py'
2021-11-24T10:52:54,856   adding 'stereo/algorithm/pysctransform/fit.py'
2021-11-24T10:52:54,857   adding 'stereo/algorithm/pysctransform/fit_glmgp.py'
2021-11-24T10:52:54,859   adding 'stereo/algorithm/pysctransform/jax_bfgs.py'
2021-11-24T10:52:54,860   adding 'stereo/algorithm/pysctransform/plotting.py'
2021-11-24T10:52:54,865   adding 'stereo/algorithm/pysctransform/pysctransform.py'
2021-11-24T10:52:54,867   adding 'stereo/algorithm/pysctransform/r_bw.py'
2021-11-24T10:52:54,869   adding 'stereo/core/__init__.py'
2021-11-24T10:52:54,870   adding 'stereo/core/cell.py'
2021-11-24T10:52:54,871   adding 'stereo/core/data.py'
2021-11-24T10:52:54,873   adding 'stereo/core/gene.py'
2021-11-24T10:52:54,877   adding 'stereo/core/st_pipeline.py'
2021-11-24T10:52:54,879   adding 'stereo/core/stereo_exp_data.py'
2021-11-24T10:52:54,880   adding 'stereo/core/stereo_result.py'
2021-11-24T10:52:54,882   adding 'stereo/core/tool_base.py'
2021-11-24T10:52:54,884   adding 'stereo/image/__init__.py'
2021-11-24T10:52:54,885   adding 'stereo/image/pyramid.py'
2021-11-24T10:52:54,887   adding 'stereo/image/segmentation/__init__.py'
2021-11-24T10:52:54,888   adding 'stereo/image/segmentation/segment.py'
2021-11-24T10:52:54,890   adding 'stereo/image/segmentation/seg_utils/__init__.py'
2021-11-24T10:52:54,892   adding 'stereo/image/segmentation/seg_utils/cell_infer.py'
2021-11-24T10:52:54,894   adding 'stereo/image/segmentation/seg_utils/cell_seg_pipeline.py'
2021-11-24T10:52:54,896   adding 'stereo/image/segmentation/seg_utils/find_maxima.py'
2021-11-24T10:52:54,898   adding 'stereo/image/segmentation/seg_utils/grade.py'
2021-11-24T10:52:54,899   adding 'stereo/image/segmentation/seg_utils/image.py'
2021-11-24T10:52:54,901   adding 'stereo/image/segmentation/seg_utils/tissue_seg.py'
2021-11-24T10:52:54,902   adding 'stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py'
2021-11-24T10:52:54,906   adding 'stereo/image/segmentation/seg_utils/utils.py'
2021-11-24T10:52:54,908   adding 'stereo/io/__init__.py'
2021-11-24T10:52:54,909   adding 'stereo/io/gef.py'
2021-11-24T10:52:54,911   adding 'stereo/io/h5ad.py'
2021-11-24T10:52:54,914   adding 'stereo/io/reader.py'
2021-11-24T10:52:54,915   adding 'stereo/io/writer.py'
2021-11-24T10:52:54,917   adding 'stereo/plots/__init__.py'
2021-11-24T10:52:54,919   adding 'stereo/plots/marker_genes.py'
2021-11-24T10:52:54,922   adding 'stereo/plots/plot_collection.py'
2021-11-24T10:52:54,924   adding 'stereo/plots/scatter.py'
2021-11-24T10:52:54,926   adding 'stereo/plots/violin.py'
2021-11-24T10:52:54,928   adding 'stereo/plots/_plot_basic/__init__.py'
2021-11-24T10:52:54,929   adding 'stereo/plots/_plot_basic/app.py'
2021-11-24T10:52:54,930   adding 'stereo/plots/_plot_basic/get_stereo_data.py'
2021-11-24T10:52:54,932   adding 'stereo/plots/_plot_basic/heatmap_plt.py'
2021-11-24T10:52:54,934   adding 'stereo/plots/interact_plot/__init__.py'
2021-11-24T10:52:54,936   adding 'stereo/plots/interact_plot/interactive_scatter.py'
2021-11-24T10:52:54,938   adding 'stereo/plots/interact_plot/poly_selection.py'
2021-11-24T10:52:54,939   adding 'stereo/plots/interact_plot/spatial_cluster.py'
2021-11-24T10:52:54,941   adding 'stereo/preprocess/__init__.py'
2021-11-24T10:52:54,942   adding 'stereo/preprocess/filter.py'
2021-11-24T10:52:54,944   adding 'stereo/preprocess/normalize.py'
2021-11-24T10:52:54,945   adding 'stereo/preprocess/qc.py'
2021-11-24T10:52:54,947   adding 'stereo/preprocess/sc_transform.py'
2021-11-24T10:52:54,949   adding 'stereo/tools/__init__.py'
2021-11-24T10:52:54,951   adding 'stereo/tools/cell_type_anno.py'
2021-11-24T10:52:54,953   adding 'stereo/tools/cluster.py'
2021-11-24T10:52:54,955   adding 'stereo/tools/clustering.py'
2021-11-24T10:52:54,956   adding 'stereo/tools/dim_reduce.py'
2021-11-24T10:52:54,958   adding 'stereo/tools/find_markers.py'
2021-11-24T10:52:54,960   adding 'stereo/tools/highly_variable_genes.py'
2021-11-24T10:52:54,962   adding 'stereo/tools/spatial_lag.py'
2021-11-24T10:52:54,963   adding 'stereo/tools/spatial_pattern_score.py'
2021-11-24T10:52:54,965   adding 'stereo/utils/__init__.py'
2021-11-24T10:52:54,966   adding 'stereo/utils/correlation.py'
2021-11-24T10:52:54,968   adding 'stereo/utils/data_helper.py'
2021-11-24T10:52:54,969   adding 'stereo/utils/hvg_utils.py'
2021-11-24T10:52:54,971   adding 'stereo/utils/spmatrix_helper.py'
2021-11-24T10:52:54,974   adding 'tests/__init__.py'
2021-11-24T10:52:54,976   adding 'tests/data_parse.py'
2021-11-24T10:52:54,978   adding 'tests/test_cell_type_anno.py'
2021-11-24T10:52:54,979   adding 'tests/test_clustering.py'
2021-11-24T10:52:54,980   adding 'tests/test_data_helper.py'
2021-11-24T10:52:54,981   adding 'tests/test_dim_reduce.py'
2021-11-24T10:52:54,983   adding 'tests/test_filter.py'
2021-11-24T10:52:54,984   adding 'tests/test_find_markers.py'
2021-11-24T10:52:54,985   adding 'tests/test_gsea.py'
2021-11-24T10:52:54,987   adding 'tests/test_hvgs.py'
2021-11-24T10:52:54,988   adding 'tests/test_image_pyramid.py'
2021-11-24T10:52:54,989   adding 'tests/test_interactive_scatter.py'
2021-11-24T10:52:54,991   adding 'tests/test_normalize.py'
2021-11-24T10:52:54,992   adding 'tests/test_pattern_score.py'
2021-11-24T10:52:54,993   adding 'tests/test_plots.py'
2021-11-24T10:52:54,994   adding 'tests/test_qc.py'
2021-11-24T10:52:54,996   adding 'tests/test_reader.py'
2021-11-24T10:52:54,997   adding 'tests/test_sc_transform.py'
2021-11-24T10:52:55,471   adding 'tests/test_sc_transfrom.ipynb'
2021-11-24T10:52:55,505   adding 'tests/test_segment.py'
2021-11-24T10:52:55,506   adding 'tests/test_spatial_lag.py'
2021-11-24T10:52:55,507   adding 'tests/test_spatial_pattern.py'
2021-11-24T10:52:55,508   adding 'tests/test_stereo_exp_data.py'
2021-11-24T10:52:55,510   adding 'tests/test_tools.py'
2021-11-24T10:52:55,511   adding 'tests/test_writer.py'
2021-11-24T10:52:55,512   adding 'stereopy-0.2.1.1.dist-info/LICENSE'
2021-11-24T10:52:55,513   adding 'stereopy-0.2.1.1.dist-info/METADATA'
2021-11-24T10:52:55,514   adding 'stereopy-0.2.1.1.dist-info/WHEEL'
2021-11-24T10:52:55,515   adding 'stereopy-0.2.1.1.dist-info/top_level.txt'
2021-11-24T10:52:55,516   adding 'stereopy-0.2.1.1.dist-info/RECORD'
2021-11-24T10:52:55,539   removing build/bdist.linux-armv7l/wheel
2021-11-24T10:52:55,581   install hotspot from git, command: pip install git+https://github.com/yoseflab/Hotspot.git
2021-11-24T10:52:56,880   Defaulting to user installation because normal site-packages is not writeable
2021-11-24T10:52:57,105   Collecting git+https://github.com/yoseflab/Hotspot.git
2021-11-24T10:52:57,108     Cloning https://github.com/yoseflab/Hotspot.git to /tmp/pip-req-build-enw8u6oj
2021-11-24T10:52:57,108     Running command git clone -q https://github.com/yoseflab/Hotspot.git /tmp/pip-req-build-enw8u6oj
2021-11-24T10:52:57,160     fatal: transport 'https' not allowed
2021-11-24T10:52:57,175   WARNING: Discarding git+https://github.com/yoseflab/Hotspot.git. Command errored out with exit status 128: git clone -q https://github.com/yoseflab/Hotspot.git /tmp/pip-req-build-enw8u6oj Check the logs for full command output.
2021-11-24T10:52:57,175   ERROR: Command errored out with exit status 128: git clone -q https://github.com/yoseflab/Hotspot.git /tmp/pip-req-build-enw8u6oj Check the logs for full command output.
2021-11-24T10:52:57,192   WARNING: You are using pip version 21.1.3; however, version 21.3.1 is available.
2021-11-24T10:52:57,192   You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command.
2021-11-24T10:52:57,421   Building wheel for stereopy (setup.py): finished with status 'done'
2021-11-24T10:52:57,445   Created wheel for stereopy: filename=stereopy-0.2.1.1-py3-none-any.whl size=1510162 sha256=10f5984a2c3aa0f26dd16a87369bebc8274256dd4a44a641f50fa40e72e64d64
2021-11-24T10:52:57,446   Stored in directory: /tmp/pip-ephem-wheel-cache-pb_rpafr/wheels/d7/5d/17/e8d7509de910274d4300afd30451caa4fc2eb964d22a374423
2021-11-24T10:52:57,459 Successfully built stereopy
2021-11-24T10:52:57,517 Removed build tracker: '/tmp/pip-req-tracker-1sewaijp'