2021-11-25T00:28:21,100 Created temporary directory: /tmp/pip-ephem-wheel-cache-xxxypzxa
2021-11-25T00:28:21,104 Created temporary directory: /tmp/pip-req-tracker-dyhmryqj
2021-11-25T00:28:21,104 Initialized build tracking at /tmp/pip-req-tracker-dyhmryqj
2021-11-25T00:28:21,104 Created build tracker: /tmp/pip-req-tracker-dyhmryqj
2021-11-25T00:28:21,104 Entered build tracker: /tmp/pip-req-tracker-dyhmryqj
2021-11-25T00:28:21,105 Created temporary directory: /tmp/pip-wheel-t0_4w62b
2021-11-25T00:28:21,137 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-25T00:28:21,139 2 location(s) to search for versions of linearfold:
2021-11-25T00:28:21,139 * https://pypi.org/simple/linearfold/
2021-11-25T00:28:21,139 * https://www.piwheels.org/simple/linearfold/
2021-11-25T00:28:21,140 Fetching project page and analyzing links: https://pypi.org/simple/linearfold/
2021-11-25T00:28:21,140 Getting page https://pypi.org/simple/linearfold/
2021-11-25T00:28:21,142 Found index url https://pypi.org/simple
2021-11-25T00:28:21,234   Skipping link: No binaries permitted for linearfold: https://files.pythonhosted.org/packages/f0/a0/48e3487b631621f1c8dc77248420a53260cd38d1749312d52bf03c63f62a/LinearFold-1.0-cp36-cp36m-manylinux1_x86_64.whl#sha256=e549d9413eb0df55d38c26ac398403e675cc8c756f8344bd4a75813b7a9a5042 (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2)
2021-11-25T00:28:21,234   Found link https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz#sha256=f1366d48924df2d424e0694cbedd0f4d156111632ba6c47ce23a9ebc05cfb7c7 (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2), version: 1.0
2021-11-25T00:28:21,235 Fetching project page and analyzing links: https://www.piwheels.org/simple/linearfold/
2021-11-25T00:28:21,235 Getting page https://www.piwheels.org/simple/linearfold/
2021-11-25T00:28:21,236 Found index url https://www.piwheels.org/simple
2021-11-25T00:28:21,411   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp37-cp37m-linux_armv6l.whl#sha256=ecd6daf4fde8e567337d12acf41d096b8b99af5ef01a80bded062797e4a4f495 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2021-11-25T00:28:21,412   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp37-cp37m-linux_armv7l.whl#sha256=ecd6daf4fde8e567337d12acf41d096b8b99af5ef01a80bded062797e4a4f495 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2021-11-25T00:28:21,412 Skipping link: not a file: https://www.piwheels.org/simple/linearfold/
2021-11-25T00:28:21,412 Skipping link: not a file: https://pypi.org/simple/linearfold/
2021-11-25T00:28:21,431 Given no hashes to check 1 links for project 'linearfold': discarding no candidates
2021-11-25T00:28:21,449 Collecting linearfold==1.0
2021-11-25T00:28:21,451   Created temporary directory: /tmp/pip-unpack-dgg5fmw4
2021-11-25T00:28:21,492   Downloading LinearFold-1.0.tar.gz (56 kB)
2021-11-25T00:28:21,592   Added linearfold==1.0 from https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz#sha256=f1366d48924df2d424e0694cbedd0f4d156111632ba6c47ce23a9ebc05cfb7c7 to build tracker '/tmp/pip-req-tracker-dyhmryqj'
2021-11-25T00:28:21,593     Running setup.py (path:/tmp/pip-wheel-t0_4w62b/linearfold_683e7a84817142b4a5032e02c9abf7ce/setup.py) egg_info for package linearfold
2021-11-25T00:28:21,594     Created temporary directory: /tmp/pip-pip-egg-info-88ve5h2x
2021-11-25T00:28:21,595     Running command python setup.py egg_info
2021-11-25T00:28:22,749     running egg_info
2021-11-25T00:28:22,751     creating /tmp/pip-pip-egg-info-88ve5h2x/LinearFold.egg-info
2021-11-25T00:28:22,752     writing /tmp/pip-pip-egg-info-88ve5h2x/LinearFold.egg-info/PKG-INFO
2021-11-25T00:28:22,755     writing dependency_links to /tmp/pip-pip-egg-info-88ve5h2x/LinearFold.egg-info/dependency_links.txt
2021-11-25T00:28:22,757     writing top-level names to /tmp/pip-pip-egg-info-88ve5h2x/LinearFold.egg-info/top_level.txt
2021-11-25T00:28:22,759     writing manifest file '/tmp/pip-pip-egg-info-88ve5h2x/LinearFold.egg-info/SOURCES.txt'
2021-11-25T00:28:22,766     reading manifest file '/tmp/pip-pip-egg-info-88ve5h2x/LinearFold.egg-info/SOURCES.txt'
2021-11-25T00:28:22,767     reading manifest template 'MANIFEST.in'
2021-11-25T00:28:22,781     adding license file 'LICENSE'
2021-11-25T00:28:22,781     adding license file 'AUTHORS'
2021-11-25T00:28:22,783     writing manifest file '/tmp/pip-pip-egg-info-88ve5h2x/LinearFold.egg-info/SOURCES.txt'
2021-11-25T00:28:22,852   Source in /tmp/pip-wheel-t0_4w62b/linearfold_683e7a84817142b4a5032e02c9abf7ce has version 1.0, which satisfies requirement linearfold==1.0 from https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz#sha256=f1366d48924df2d424e0694cbedd0f4d156111632ba6c47ce23a9ebc05cfb7c7
2021-11-25T00:28:22,853   Removed linearfold==1.0 from https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz#sha256=f1366d48924df2d424e0694cbedd0f4d156111632ba6c47ce23a9ebc05cfb7c7 from build tracker '/tmp/pip-req-tracker-dyhmryqj'
2021-11-25T00:28:22,860 Created temporary directory: /tmp/pip-unpack-ahceve71
2021-11-25T00:28:22,861 Building wheels for collected packages: linearfold
2021-11-25T00:28:22,866   Created temporary directory: /tmp/pip-wheel-0nl3tlgz
2021-11-25T00:28:22,866   Building wheel for linearfold (setup.py): started
2021-11-25T00:28:22,867   Destination directory: /tmp/pip-wheel-0nl3tlgz
2021-11-25T00:28:22,867   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-t0_4w62b/linearfold_683e7a84817142b4a5032e02c9abf7ce/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-t0_4w62b/linearfold_683e7a84817142b4a5032e02c9abf7ce/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0nl3tlgz
2021-11-25T00:28:23,889   running bdist_wheel
2021-11-25T00:28:23,894   running build
2021-11-25T00:28:23,895   running build_ext
2021-11-25T00:28:23,900   building 'LinearFold' extension
2021-11-25T00:28:23,901   creating build
2021-11-25T00:28:23,901   creating build/temp.linux-armv7l-3.9
2021-11-25T00:28:23,902   creating build/temp.linux-armv7l-3.9/src
2021-11-25T00:28:23,903   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I... -I/tmp/pip-wheel-t0_4w62b/linearfold_683e7a84817142b4a5032e02c9abf7ce/src -I/tmp/pip-wheel-t0_4w62b/linearfold_683e7a84817142b4a5032e02c9abf7ce/src/Utils -I/usr/include/python3.9 -c src/python.cpp -o build/temp.linux-armv7l-3.9/src/python.o -w -Dlv -Dis_cube_pruning -Dis_candidate_list -std=c++11
2021-11-25T00:28:34,145   In file included from /usr/include/c++/10/vector:72,
2021-11-25T00:28:34,145                    from src/LinearFold.h:14,
2021-11-25T00:28:34,145                    from src/python.cpp:16:
2021-11-25T00:28:34,145   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-11-25T00:28:34,146   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-11-25T00:28:34,146     426 |       vector<_Tp, _Alloc>::
2021-11-25T00:28:34,146         |       ^~~~~~~~~~~~~~~~~~~
2021-11-25T00:28:43,954   /usr/include/c++/10/bits/vector.tcc: In constructor ‘BeamCKYParser::BeamCKYParser(int, bool, bool, bool, bool, float, std::string)’:
2021-11-25T00:28:43,955   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-11-25T00:28:43,955     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-11-25T00:28:43,955         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-11-25T00:28:43,956   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-11-25T00:28:43,956     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-11-25T00:28:43,956         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-11-25T00:28:52,597   creating build/lib.linux-armv7l-3.9
2021-11-25T00:28:52,598   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/python.o -L/tmp/pip-wheel-t0_4w62b/linearfold_683e7a84817142b4a5032e02c9abf7ce -o build/lib.linux-armv7l-3.9/LinearFold.cpython-39-arm-linux-gnueabihf.so
2021-11-25T00:28:53,082   installing to build/bdist.linux-armv7l/wheel
2021-11-25T00:28:53,083   running install
2021-11-25T00:28:53,084   running install_lib
2021-11-25T00:28:53,088   creating build/bdist.linux-armv7l
2021-11-25T00:28:53,089   creating build/bdist.linux-armv7l/wheel
2021-11-25T00:28:53,090   copying build/lib.linux-armv7l-3.9/LinearFold.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-11-25T00:28:53,162   running install_egg_info
2021-11-25T00:28:53,184   running egg_info
2021-11-25T00:28:53,185   writing LinearFold.egg-info/PKG-INFO
2021-11-25T00:28:53,187   writing dependency_links to LinearFold.egg-info/dependency_links.txt
2021-11-25T00:28:53,190   writing top-level names to LinearFold.egg-info/top_level.txt
2021-11-25T00:28:53,194   reading manifest file 'LinearFold.egg-info/SOURCES.txt'
2021-11-25T00:28:53,198   reading manifest template 'MANIFEST.in'
2021-11-25T00:28:53,211   adding license file 'LICENSE'
2021-11-25T00:28:53,211   adding license file 'AUTHORS'
2021-11-25T00:28:53,215   writing manifest file 'LinearFold.egg-info/SOURCES.txt'
2021-11-25T00:28:53,216   Copying LinearFold.egg-info to build/bdist.linux-armv7l/wheel/LinearFold-1.0-py3.9.egg-info
2021-11-25T00:28:53,226   running install_scripts
2021-11-25T00:28:53,311   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-11-25T00:28:53,312   adding license file "AUTHORS" (matched pattern "AUTHORS*")
2021-11-25T00:28:53,318   creating build/bdist.linux-armv7l/wheel/LinearFold-1.0.dist-info/WHEEL
2021-11-25T00:28:53,320   creating '/tmp/pip-wheel-0nl3tlgz/LinearFold-1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-11-25T00:28:53,833   adding 'LinearFold.cpython-39-arm-linux-gnueabihf.so'
2021-11-25T00:28:53,862   adding 'LinearFold-1.0.dist-info/AUTHORS'
2021-11-25T00:28:53,863   adding 'LinearFold-1.0.dist-info/LICENSE'
2021-11-25T00:28:53,865   adding 'LinearFold-1.0.dist-info/METADATA'
2021-11-25T00:28:53,866   adding 'LinearFold-1.0.dist-info/WHEEL'
2021-11-25T00:28:53,866   adding 'LinearFold-1.0.dist-info/top_level.txt'
2021-11-25T00:28:53,867   adding 'LinearFold-1.0.dist-info/RECORD'
2021-11-25T00:28:53,884   removing build/bdist.linux-armv7l/wheel
2021-11-25T00:28:53,970   Building wheel for linearfold (setup.py): finished with status 'done'
2021-11-25T00:28:53,985   Created wheel for linearfold: filename=LinearFold-1.0-cp39-cp39-linux_armv7l.whl size=959383 sha256=8250685a0fd51ebae8f8caec4143af60deed33a543ebcaa9f44fb01c2c0838a2
2021-11-25T00:28:53,985   Stored in directory: /tmp/pip-ephem-wheel-cache-xxxypzxa/wheels/13/f7/3d/0b5b019fbe7b832e0acca8e8331eaa1bcce58e7595517744ae
2021-11-25T00:28:53,997 Successfully built linearfold
2021-11-25T00:28:54,035 Removed build tracker: '/tmp/pip-req-tracker-dyhmryqj'