2021-11-29T20:56:26,022 Created temporary directory: /tmp/pip-ephem-wheel-cache-snm97bue
2021-11-29T20:56:26,028 Created temporary directory: /tmp/pip-req-tracker-j79cysgr
2021-11-29T20:56:26,029 Initialized build tracking at /tmp/pip-req-tracker-j79cysgr
2021-11-29T20:56:26,030 Created build tracker: /tmp/pip-req-tracker-j79cysgr
2021-11-29T20:56:26,030 Entered build tracker: /tmp/pip-req-tracker-j79cysgr
2021-11-29T20:56:26,031 Created temporary directory: /tmp/pip-wheel-0a3ieu_u
2021-11-29T20:56:26,089 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-11-29T20:56:26,093 2 location(s) to search for versions of kage-genotyper:
2021-11-29T20:56:26,093 * https://pypi.org/simple/kage-genotyper/
2021-11-29T20:56:26,093 * https://www.piwheels.org/simple/kage-genotyper/
2021-11-29T20:56:26,093 Fetching project page and analyzing links: https://pypi.org/simple/kage-genotyper/
2021-11-29T20:56:26,095 Getting page https://pypi.org/simple/kage-genotyper/
2021-11-29T20:56:26,100 Found index url https://pypi.org/simple
2021-11-29T20:56:26,426   Found link https://files.pythonhosted.org/packages/e7/66/016860668992a70bab9c872c5032fbc34e2f9ecc6936b95b4e9a0b0c812b/kage-genotyper-0.0.2.tar.gz#sha256=54ba5a094a15547344c88bd7063e22c9d932bbf7eacfbc8588a83d8b9b42dfc1 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.2
2021-11-29T20:56:26,427   Found link https://files.pythonhosted.org/packages/80/ee/e08c95ccb0c401cfb2049e7271acdcb455196900f035e0700f6229d6c25d/kage-genotyper-0.0.3.tar.gz#sha256=727bf1ff9880dea8e8fe1a2aa5da4d0797fd5f64d75eda6a1ec53be5caa7d9f3 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.3
2021-11-29T20:56:26,428   Found link https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz#sha256=d4316597d56b72c41623b03f06ed0fcacdfe0e301ad49d49fadcfd41e1f881f6 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.4
2021-11-29T20:56:26,429 Fetching project page and analyzing links: https://www.piwheels.org/simple/kage-genotyper/
2021-11-29T20:56:26,430 Getting page https://www.piwheels.org/simple/kage-genotyper/
2021-11-29T20:56:26,432 Found index url https://www.piwheels.org/simple
2021-11-29T20:56:26,663   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.3-py3-none-any.whl#sha256=7d52b7bdc251d8fa41b2627126137f9c9d6b34e76dcc9d8c85de8d0d42f6bf33 (from https://www.piwheels.org/simple/kage-genotyper/)
2021-11-29T20:56:26,694 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates
2021-11-29T20:56:26,727 Collecting kage-genotyper==0.0.4
2021-11-29T20:56:26,730   Created temporary directory: /tmp/pip-unpack-c0e4ejn1
2021-11-29T20:56:26,968   Downloading kage-genotyper-0.0.4.tar.gz (32 kB)
2021-11-29T20:56:27,198   Added kage-genotyper==0.0.4 from https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz#sha256=d4316597d56b72c41623b03f06ed0fcacdfe0e301ad49d49fadcfd41e1f881f6 to build tracker '/tmp/pip-req-tracker-j79cysgr'
2021-11-29T20:56:27,202     Running setup.py (path:/tmp/pip-wheel-0a3ieu_u/kage-genotyper_41278abe2a8c4fc0967c8247d91f2f1f/setup.py) egg_info for package kage-genotyper
2021-11-29T20:56:27,204     Created temporary directory: /tmp/pip-pip-egg-info-hjs9m6k3
2021-11-29T20:56:27,205     Running command python setup.py egg_info
2021-11-29T20:56:29,301     running egg_info
2021-11-29T20:56:29,307     creating /tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info
2021-11-29T20:56:29,308     writing dependency_links to /tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/dependency_links.txt
2021-11-29T20:56:29,311     writing /tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/PKG-INFO
2021-11-29T20:56:29,316     writing entry points to /tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/entry_points.txt
2021-11-29T20:56:29,319     writing requirements to /tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/requires.txt
2021-11-29T20:56:29,321     writing top-level names to /tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/top_level.txt
2021-11-29T20:56:29,326     writing manifest file '/tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/SOURCES.txt'
2021-11-29T20:56:29,683     reading manifest file '/tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/SOURCES.txt'
2021-11-29T20:56:29,692     writing manifest file '/tmp/pip-pip-egg-info-hjs9m6k3/kage_genotyper.egg-info/SOURCES.txt'
2021-11-29T20:56:29,826   Source in /tmp/pip-wheel-0a3ieu_u/kage-genotyper_41278abe2a8c4fc0967c8247d91f2f1f has version 0.0.4, which satisfies requirement kage-genotyper==0.0.4 from https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz#sha256=d4316597d56b72c41623b03f06ed0fcacdfe0e301ad49d49fadcfd41e1f881f6
2021-11-29T20:56:29,827   Removed kage-genotyper==0.0.4 from https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz#sha256=d4316597d56b72c41623b03f06ed0fcacdfe0e301ad49d49fadcfd41e1f881f6 from build tracker '/tmp/pip-req-tracker-j79cysgr'
2021-11-29T20:56:29,835 Created temporary directory: /tmp/pip-unpack-x5yrcvhs
2021-11-29T20:56:29,836 Building wheels for collected packages: kage-genotyper
2021-11-29T20:56:29,845   Created temporary directory: /tmp/pip-wheel-r9ymhez7
2021-11-29T20:56:29,846   Building wheel for kage-genotyper (setup.py): started
2021-11-29T20:56:29,847   Destination directory: /tmp/pip-wheel-r9ymhez7
2021-11-29T20:56:29,848   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0a3ieu_u/kage-genotyper_41278abe2a8c4fc0967c8247d91f2f1f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0a3ieu_u/kage-genotyper_41278abe2a8c4fc0967c8247d91f2f1f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-r9ymhez7
2021-11-29T20:56:31,784   running bdist_wheel
2021-11-29T20:56:31,799   running build
2021-11-29T20:56:31,800   running build_py
2021-11-29T20:56:32,141   creating build
2021-11-29T20:56:32,142   creating build/lib
2021-11-29T20:56:32,143   creating build/lib/kage
2021-11-29T20:56:32,146   copying kage/numpy_genotyper.py -> build/lib/kage
2021-11-29T20:56:32,152   copying kage/node_counts.py -> build/lib/kage
2021-11-29T20:56:32,156   copying kage/helper_index_using_duplicate_counts.py -> build/lib/kage
2021-11-29T20:56:32,160   copying kage/helper_index.py -> build/lib/kage
2021-11-29T20:56:32,164   copying kage/joint_distribution.py -> build/lib/kage
2021-11-29T20:56:32,169   copying kage/variant_kmer_analyser.py -> build/lib/kage
2021-11-29T20:56:32,174   copying kage/command_line_interface.py -> build/lib/kage
2021-11-29T20:56:32,184   copying kage/util.py -> build/lib/kage
2021-11-29T20:56:32,189   copying kage/simulation.py -> build/lib/kage
2021-11-29T20:56:32,196   copying kage/variant_filtering.py -> build/lib/kage
2021-11-29T20:56:32,201   copying kage/genotyper.py -> build/lib/kage
2021-11-29T20:56:32,209   copying kage/test.py -> build/lib/kage
2021-11-29T20:56:32,214   copying kage/__init__.py -> build/lib/kage
2021-11-29T20:56:32,219   copying kage/negative_binomial_model.py -> build/lib/kage
2021-11-29T20:56:32,224   copying kage/bayes_genotyper.py -> build/lib/kage
2021-11-29T20:56:32,230   copying kage/models.py -> build/lib/kage
2021-11-29T20:56:32,234   copying kage/analysis.py -> build/lib/kage
2021-11-29T20:56:32,240   copying kage/reference_kmers.py -> build/lib/kage
2021-11-29T20:56:32,244   copying kage/node_count_model.py -> build/lib/kage
2021-11-29T20:56:32,250   copying kage/reads.py -> build/lib/kage
2021-11-29T20:56:32,256   copying kage/combomodel.py -> build/lib/kage
2021-11-29T20:56:32,262   copying kage/combination_model_genotyper.py -> build/lib/kage
2021-11-29T20:56:32,269   copying kage/kmers.py -> build/lib/kage
2021-11-29T20:56:32,274   copying kage/letter_sequence_to_numeric.py -> build/lib/kage
2021-11-29T20:56:32,279   copying kage/index_bundle.py -> build/lib/kage
2021-11-29T20:56:32,299   installing to build/bdist.linux-armv7l/wheel
2021-11-29T20:56:32,300   running install
2021-11-29T20:56:32,301   running install_lib
2021-11-29T20:56:32,309   creating build/bdist.linux-armv7l
2021-11-29T20:56:32,310   creating build/bdist.linux-armv7l/wheel
2021-11-29T20:56:32,315   creating build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,317   copying build/lib/kage/numpy_genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,323   copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,327   copying build/lib/kage/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,332   copying build/lib/kage/helper_index.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,338   copying build/lib/kage/joint_distribution.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,343   copying build/lib/kage/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,349   copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,358   copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,363   copying build/lib/kage/simulation.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,370   copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,376   copying build/lib/kage/genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,383   copying build/lib/kage/test.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,389   copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,394   copying build/lib/kage/negative_binomial_model.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,400   copying build/lib/kage/bayes_genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,406   copying build/lib/kage/models.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,411   copying build/lib/kage/analysis.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,419   copying build/lib/kage/reference_kmers.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,425   copying build/lib/kage/node_count_model.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,432   copying build/lib/kage/reads.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,438   copying build/lib/kage/combomodel.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,445   copying build/lib/kage/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,451   copying build/lib/kage/kmers.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,457   copying build/lib/kage/letter_sequence_to_numeric.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,462   copying build/lib/kage/index_bundle.py -> build/bdist.linux-armv7l/wheel/kage
2021-11-29T20:56:32,466   running install_egg_info
2021-11-29T20:56:32,515   running egg_info
2021-11-29T20:56:32,516   writing entry points to kage_genotyper.egg-info/entry_points.txt
2021-11-29T20:56:32,518   writing requirements to kage_genotyper.egg-info/requires.txt
2021-11-29T20:56:32,521   writing top-level names to kage_genotyper.egg-info/top_level.txt
2021-11-29T20:56:32,523   writing dependency_links to kage_genotyper.egg-info/dependency_links.txt
2021-11-29T20:56:32,526   writing kage_genotyper.egg-info/PKG-INFO
2021-11-29T20:56:32,539   reading manifest file 'kage_genotyper.egg-info/SOURCES.txt'
2021-11-29T20:56:32,552   writing manifest file 'kage_genotyper.egg-info/SOURCES.txt'
2021-11-29T20:56:32,555   Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.4-py3.5.egg-info
2021-11-29T20:56:32,588   running install_scripts
2021-11-29T20:56:32,804   creating build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.4.dist-info/WHEEL
2021-11-29T20:56:33,109   Building wheel for kage-genotyper (setup.py): finished with status 'done'
2021-11-29T20:56:33,114   Created wheel for kage-genotyper: filename=kage_genotyper-0.0.4-py3-none-any.whl size=40836 sha256=a279c71d67ea133f1cf0818eb5c559c97e5f2460cc45aba044dd17abf30d6446
2021-11-29T20:56:33,115   Stored in directory: /tmp/pip-ephem-wheel-cache-snm97bue/wheels/6f/b5/41/de7e29c8ec4ed922949fca32dae9f02b35a8a77850791e1618
2021-11-29T20:56:33,134 Successfully built kage-genotyper
2021-11-29T20:56:33,146 Removed build tracker: '/tmp/pip-req-tracker-j79cysgr'