2021-11-30T22:32:57,933 Created temporary directory: /tmp/pip-ephem-wheel-cache-8e6v6tuy 2021-11-30T22:32:57,940 Created temporary directory: /tmp/pip-req-tracker-a5knn5gt 2021-11-30T22:32:57,940 Initialized build tracking at /tmp/pip-req-tracker-a5knn5gt 2021-11-30T22:32:57,941 Created build tracker: /tmp/pip-req-tracker-a5knn5gt 2021-11-30T22:32:57,941 Entered build tracker: /tmp/pip-req-tracker-a5knn5gt 2021-11-30T22:32:57,943 Created temporary directory: /tmp/pip-wheel-yyklv3da 2021-11-30T22:32:58,009 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-11-30T22:32:58,012 2 location(s) to search for versions of kage-genotyper: 2021-11-30T22:32:58,012 * https://pypi.org/simple/kage-genotyper/ 2021-11-30T22:32:58,012 * https://www.piwheels.org/simple/kage-genotyper/ 2021-11-30T22:32:58,013 Fetching project page and analyzing links: https://pypi.org/simple/kage-genotyper/ 2021-11-30T22:32:58,015 Getting page https://pypi.org/simple/kage-genotyper/ 2021-11-30T22:32:58,019 Found index url https://pypi.org/simple 2021-11-30T22:32:58,350 Found link https://files.pythonhosted.org/packages/e7/66/016860668992a70bab9c872c5032fbc34e2f9ecc6936b95b4e9a0b0c812b/kage-genotyper-0.0.2.tar.gz#sha256=54ba5a094a15547344c88bd7063e22c9d932bbf7eacfbc8588a83d8b9b42dfc1 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.2 2021-11-30T22:32:58,351 Found link https://files.pythonhosted.org/packages/80/ee/e08c95ccb0c401cfb2049e7271acdcb455196900f035e0700f6229d6c25d/kage-genotyper-0.0.3.tar.gz#sha256=727bf1ff9880dea8e8fe1a2aa5da4d0797fd5f64d75eda6a1ec53be5caa7d9f3 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.3 2021-11-30T22:32:58,352 Found link https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz#sha256=d4316597d56b72c41623b03f06ed0fcacdfe0e301ad49d49fadcfd41e1f881f6 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.4 2021-11-30T22:32:58,353 Found link https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz#sha256=78c0fdef5e5cf0ee401e5188dece6e297c3e20c3d72aa355c86426149d31819f (from https://pypi.org/simple/kage-genotyper/), version: 0.0.5 2021-11-30T22:32:58,354 Fetching project page and analyzing links: https://www.piwheels.org/simple/kage-genotyper/ 2021-11-30T22:32:58,354 Getting page https://www.piwheels.org/simple/kage-genotyper/ 2021-11-30T22:32:58,357 Found index url https://www.piwheels.org/simple 2021-11-30T22:32:58,638 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.3-py3-none-any.whl#sha256=7d52b7bdc251d8fa41b2627126137f9c9d6b34e76dcc9d8c85de8d0d42f6bf33 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-11-30T22:32:58,639 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.4-py3-none-any.whl#sha256=a279c71d67ea133f1cf0818eb5c559c97e5f2460cc45aba044dd17abf30d6446 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-11-30T22:32:58,669 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates 2021-11-30T22:32:58,701 Collecting kage-genotyper==0.0.5 2021-11-30T22:32:58,705 Created temporary directory: /tmp/pip-unpack-5qc0j5r3 2021-11-30T22:32:58,938 Downloading kage-genotyper-0.0.5.tar.gz (32 kB) 2021-11-30T22:32:59,176 Added kage-genotyper==0.0.5 from https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz#sha256=78c0fdef5e5cf0ee401e5188dece6e297c3e20c3d72aa355c86426149d31819f to build tracker '/tmp/pip-req-tracker-a5knn5gt' 2021-11-30T22:32:59,179 Running setup.py (path:/tmp/pip-wheel-yyklv3da/kage-genotyper_4c82d0d1f3254851b40f3906e0cf09ea/setup.py) egg_info for package kage-genotyper 2021-11-30T22:32:59,182 Created temporary directory: /tmp/pip-pip-egg-info-j2vpi5js 2021-11-30T22:32:59,183 Running command python setup.py egg_info 2021-11-30T22:33:01,123 running egg_info 2021-11-30T22:33:01,129 creating /tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info 2021-11-30T22:33:01,131 writing dependency_links to /tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/dependency_links.txt 2021-11-30T22:33:01,134 writing requirements to /tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/requires.txt 2021-11-30T22:33:01,136 writing entry points to /tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/entry_points.txt 2021-11-30T22:33:01,138 writing /tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/PKG-INFO 2021-11-30T22:33:01,144 writing top-level names to /tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/top_level.txt 2021-11-30T22:33:01,148 writing manifest file '/tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/SOURCES.txt' 2021-11-30T22:33:01,537 reading manifest file '/tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/SOURCES.txt' 2021-11-30T22:33:01,548 writing manifest file '/tmp/pip-pip-egg-info-j2vpi5js/kage_genotyper.egg-info/SOURCES.txt' 2021-11-30T22:33:01,692 Source in /tmp/pip-wheel-yyklv3da/kage-genotyper_4c82d0d1f3254851b40f3906e0cf09ea has version 0.0.5, which satisfies requirement kage-genotyper==0.0.5 from https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz#sha256=78c0fdef5e5cf0ee401e5188dece6e297c3e20c3d72aa355c86426149d31819f 2021-11-30T22:33:01,694 Removed kage-genotyper==0.0.5 from https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz#sha256=78c0fdef5e5cf0ee401e5188dece6e297c3e20c3d72aa355c86426149d31819f from build tracker '/tmp/pip-req-tracker-a5knn5gt' 2021-11-30T22:33:01,703 Created temporary directory: /tmp/pip-unpack-bn3jmwr7 2021-11-30T22:33:01,705 Building wheels for collected packages: kage-genotyper 2021-11-30T22:33:01,715 Created temporary directory: /tmp/pip-wheel-bizbn6so 2021-11-30T22:33:01,716 Building wheel for kage-genotyper (setup.py): started 2021-11-30T22:33:01,717 Destination directory: /tmp/pip-wheel-bizbn6so 2021-11-30T22:33:01,718 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-yyklv3da/kage-genotyper_4c82d0d1f3254851b40f3906e0cf09ea/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-yyklv3da/kage-genotyper_4c82d0d1f3254851b40f3906e0cf09ea/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bizbn6so 2021-11-30T22:33:03,660 running bdist_wheel 2021-11-30T22:33:03,675 running build 2021-11-30T22:33:03,676 running build_py 2021-11-30T22:33:04,015 creating build 2021-11-30T22:33:04,016 creating build/lib 2021-11-30T22:33:04,017 creating build/lib/kage 2021-11-30T22:33:04,020 copying kage/kmers.py -> build/lib/kage 2021-11-30T22:33:04,024 copying kage/genotyper.py -> build/lib/kage 2021-11-30T22:33:04,030 copying kage/test.py -> build/lib/kage 2021-11-30T22:33:04,033 copying kage/numpy_genotyper.py -> build/lib/kage 2021-11-30T22:33:04,039 copying kage/util.py -> build/lib/kage 2021-11-30T22:33:04,042 copying kage/combination_model_genotyper.py -> build/lib/kage 2021-11-30T22:33:04,047 copying kage/reads.py -> build/lib/kage 2021-11-30T22:33:04,053 copying kage/reference_kmers.py -> build/lib/kage 2021-11-30T22:33:04,058 copying kage/helper_index.py -> build/lib/kage 2021-11-30T22:33:04,065 copying kage/letter_sequence_to_numeric.py -> build/lib/kage 2021-11-30T22:33:04,070 copying kage/node_counts.py -> build/lib/kage 2021-11-30T22:33:04,075 copying kage/combomodel.py -> build/lib/kage 2021-11-30T22:33:04,081 copying kage/node_count_model.py -> build/lib/kage 2021-11-30T22:33:04,088 copying kage/models.py -> build/lib/kage 2021-11-30T22:33:04,093 copying kage/bayes_genotyper.py -> build/lib/kage 2021-11-30T22:33:04,098 copying kage/__init__.py -> build/lib/kage 2021-11-30T22:33:04,103 copying kage/helper_index_using_duplicate_counts.py -> build/lib/kage 2021-11-30T22:33:04,109 copying kage/negative_binomial_model.py -> build/lib/kage 2021-11-30T22:33:04,113 copying kage/variant_kmer_analyser.py -> build/lib/kage 2021-11-30T22:33:04,116 copying kage/joint_distribution.py -> build/lib/kage 2021-11-30T22:33:04,120 copying kage/command_line_interface.py -> build/lib/kage 2021-11-30T22:33:04,127 copying kage/analysis.py -> build/lib/kage 2021-11-30T22:33:04,134 copying kage/index_bundle.py -> build/lib/kage 2021-11-30T22:33:04,139 copying kage/simulation.py -> build/lib/kage 2021-11-30T22:33:04,145 copying kage/variant_filtering.py -> build/lib/kage 2021-11-30T22:33:04,168 installing to build/bdist.linux-armv7l/wheel 2021-11-30T22:33:04,169 running install 2021-11-30T22:33:04,172 running install_lib 2021-11-30T22:33:04,179 creating build/bdist.linux-armv7l 2021-11-30T22:33:04,180 creating build/bdist.linux-armv7l/wheel 2021-11-30T22:33:04,185 creating build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,187 copying build/lib/kage/kmers.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,191 copying build/lib/kage/genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,197 copying build/lib/kage/test.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,200 copying build/lib/kage/numpy_genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,206 copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,210 copying build/lib/kage/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,216 copying build/lib/kage/reads.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,222 copying build/lib/kage/reference_kmers.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,227 copying build/lib/kage/helper_index.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,233 copying build/lib/kage/letter_sequence_to_numeric.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,237 copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,241 copying build/lib/kage/combomodel.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,246 copying build/lib/kage/node_count_model.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,251 copying build/lib/kage/models.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,256 copying build/lib/kage/bayes_genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,261 copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,266 copying build/lib/kage/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,272 copying build/lib/kage/negative_binomial_model.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,276 copying build/lib/kage/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,280 copying build/lib/kage/joint_distribution.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,284 copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,291 copying build/lib/kage/analysis.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,298 copying build/lib/kage/index_bundle.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,303 copying build/lib/kage/simulation.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,310 copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/kage 2021-11-30T22:33:04,314 running install_egg_info 2021-11-30T22:33:04,358 running egg_info 2021-11-30T22:33:04,360 writing top-level names to kage_genotyper.egg-info/top_level.txt 2021-11-30T22:33:04,362 writing kage_genotyper.egg-info/PKG-INFO 2021-11-30T22:33:04,366 writing requirements to kage_genotyper.egg-info/requires.txt 2021-11-30T22:33:04,369 writing entry points to kage_genotyper.egg-info/entry_points.txt 2021-11-30T22:33:04,371 writing dependency_links to kage_genotyper.egg-info/dependency_links.txt 2021-11-30T22:33:04,382 reading manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2021-11-30T22:33:04,395 writing manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2021-11-30T22:33:04,398 Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.5-py3.5.egg-info 2021-11-30T22:33:04,431 running install_scripts 2021-11-30T22:33:04,636 creating build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.5.dist-info/WHEEL 2021-11-30T22:33:04,932 Building wheel for kage-genotyper (setup.py): finished with status 'done' 2021-11-30T22:33:04,936 Created wheel for kage-genotyper: filename=kage_genotyper-0.0.5-py3-none-any.whl size=41009 sha256=dbca21ae8964d1bf38306442e517c6b17b688a29519f7675082be82135c4c98f 2021-11-30T22:33:04,937 Stored in directory: /tmp/pip-ephem-wheel-cache-8e6v6tuy/wheels/af/1b/ac/cc74a598c5cef4530f5243048b842d08cafa559b7e6277fbd8 2021-11-30T22:33:04,956 Successfully built kage-genotyper 2021-11-30T22:33:04,968 Removed build tracker: '/tmp/pip-req-tracker-a5knn5gt'