2021-12-06T20:43:59,203 Created temporary directory: /tmp/pip-ephem-wheel-cache-2vfqoq1f
2021-12-06T20:43:59,209 Created temporary directory: /tmp/pip-req-tracker-wm4tub2i
2021-12-06T20:43:59,210 Initialized build tracking at /tmp/pip-req-tracker-wm4tub2i
2021-12-06T20:43:59,211 Created build tracker: /tmp/pip-req-tracker-wm4tub2i
2021-12-06T20:43:59,211 Entered build tracker: /tmp/pip-req-tracker-wm4tub2i
2021-12-06T20:43:59,212 Created temporary directory: /tmp/pip-wheel-7tisg8lv
2021-12-06T20:43:59,283 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-06T20:43:59,287 2 location(s) to search for versions of kage-genotyper:
2021-12-06T20:43:59,287 * https://pypi.org/simple/kage-genotyper/
2021-12-06T20:43:59,287 * https://www.piwheels.org/simple/kage-genotyper/
2021-12-06T20:43:59,288 Fetching project page and analyzing links: https://pypi.org/simple/kage-genotyper/
2021-12-06T20:43:59,290 Getting page https://pypi.org/simple/kage-genotyper/
2021-12-06T20:43:59,294 Found index url https://pypi.org/simple
2021-12-06T20:43:59,539   Found link https://files.pythonhosted.org/packages/e7/66/016860668992a70bab9c872c5032fbc34e2f9ecc6936b95b4e9a0b0c812b/kage-genotyper-0.0.2.tar.gz#sha256=54ba5a094a15547344c88bd7063e22c9d932bbf7eacfbc8588a83d8b9b42dfc1 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.2
2021-12-06T20:43:59,540   Found link https://files.pythonhosted.org/packages/80/ee/e08c95ccb0c401cfb2049e7271acdcb455196900f035e0700f6229d6c25d/kage-genotyper-0.0.3.tar.gz#sha256=727bf1ff9880dea8e8fe1a2aa5da4d0797fd5f64d75eda6a1ec53be5caa7d9f3 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.3
2021-12-06T20:43:59,541   Found link https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz#sha256=d4316597d56b72c41623b03f06ed0fcacdfe0e301ad49d49fadcfd41e1f881f6 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.4
2021-12-06T20:43:59,542   Found link https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz#sha256=78c0fdef5e5cf0ee401e5188dece6e297c3e20c3d72aa355c86426149d31819f (from https://pypi.org/simple/kage-genotyper/), version: 0.0.5
2021-12-06T20:43:59,543   Found link https://files.pythonhosted.org/packages/98/56/5a01b760b477d84f2e0d4284563b1a49d4c7af720ce16d8fe35273e43659/kage-genotyper-0.0.6.tar.gz#sha256=ddc00d681b1ff98043bf087216c44681f6dc8dbfad4d327a2775f3eec6937fae (from https://pypi.org/simple/kage-genotyper/), version: 0.0.6
2021-12-06T20:43:59,544   Found link https://files.pythonhosted.org/packages/62/2f/3fff47b02ebb52b577de8ff09e20d158d6796d577ab450cdee96f698915c/kage-genotyper-0.0.7.tar.gz#sha256=0a9471a1138b797df060c5aa9e7a8761e6282c5b0361432c8dcfbd168cbc15ce (from https://pypi.org/simple/kage-genotyper/), version: 0.0.7
2021-12-06T20:43:59,545   Found link https://files.pythonhosted.org/packages/52/b9/4e0cdf90c6fdee475a81d9eb47e8313937d68047a26314a6f4106b1f2f1d/kage-genotyper-0.0.8.tar.gz#sha256=11f2cd7f4adb9bb782dfaa359e8262b8f9616efc326e6d78f3608deabc81b0ea (from https://pypi.org/simple/kage-genotyper/), version: 0.0.8
2021-12-06T20:43:59,546   Found link https://files.pythonhosted.org/packages/37/a0/b87d59cc79cc5ecdd5517141b7c9e29953bfea3e9272b99840e1cd9b3d97/kage-genotyper-0.0.9.tar.gz#sha256=062ad455d207590ac2c60f823dd2868cdb52324dc4d06e960cd314b3a114b6d3 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.9
2021-12-06T20:43:59,547   Found link https://files.pythonhosted.org/packages/a3/cc/ba453ad8b8cb30ad50f71f35eb171b5fd2419999465ec9ae2572fc1816bb/kage-genotyper-0.0.10.tar.gz#sha256=267e5ed35e9f10ff41b40e710c2d4becc564d6e2922048c1d3892f3b1a5c1780 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.10
2021-12-06T20:43:59,547   Found link https://files.pythonhosted.org/packages/6a/54/8aba286e135663aade36ea3d9a597062aee31798db5622527b438994c2c2/kage-genotyper-0.0.12.tar.gz#sha256=05a080b9cd4f9250b5d7b0cffc7189491a019c8bc454499ef0b4cd6fe0de58f7 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.12
2021-12-06T20:43:59,548 Fetching project page and analyzing links: https://www.piwheels.org/simple/kage-genotyper/
2021-12-06T20:43:59,549 Getting page https://www.piwheels.org/simple/kage-genotyper/
2021-12-06T20:43:59,552 Found index url https://www.piwheels.org/simple
2021-12-06T20:43:59,786   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.10-py3-none-any.whl#sha256=f0de4fec6f21e6c0e0fe926b55af6a9032fb8af3ff0ac0a4e462c49fa9fefaf5 (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,787   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.3-py3-none-any.whl#sha256=7d52b7bdc251d8fa41b2627126137f9c9d6b34e76dcc9d8c85de8d0d42f6bf33 (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,787   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.4-py3-none-any.whl#sha256=a279c71d67ea133f1cf0818eb5c559c97e5f2460cc45aba044dd17abf30d6446 (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,788   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.5-py3-none-any.whl#sha256=dbca21ae8964d1bf38306442e517c6b17b688a29519f7675082be82135c4c98f (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,788   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.6-py3-none-any.whl#sha256=7f26289022b49cd9611615aa9f542bea798b0827f5df45e23c5d65148fb2f169 (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,789   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.7-py3-none-any.whl#sha256=6c45550e73562e3543e4dedf63f5e42897169f62a701603f2c4a460ac1e0b5fa (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,789   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.8-py3-none-any.whl#sha256=17c38eb9469806ae1d16028b61450a754b7a2e9607b63cf4cb2c1bc4cd19f562 (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,790   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.9-py3-none-any.whl#sha256=6728e2c34e7473f450ba0dc3b680189ec324937e583ce456df04d4352047531b (from https://www.piwheels.org/simple/kage-genotyper/)
2021-12-06T20:43:59,824 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates
2021-12-06T20:43:59,856 Collecting kage-genotyper==0.0.12
2021-12-06T20:43:59,860   Created temporary directory: /tmp/pip-unpack-9r622jho
2021-12-06T20:44:00,085   Downloading kage-genotyper-0.0.12.tar.gz (30 kB)
2021-12-06T20:44:00,306   Added kage-genotyper==0.0.12 from https://files.pythonhosted.org/packages/6a/54/8aba286e135663aade36ea3d9a597062aee31798db5622527b438994c2c2/kage-genotyper-0.0.12.tar.gz#sha256=05a080b9cd4f9250b5d7b0cffc7189491a019c8bc454499ef0b4cd6fe0de58f7 to build tracker '/tmp/pip-req-tracker-wm4tub2i'
2021-12-06T20:44:00,308     Running setup.py (path:/tmp/pip-wheel-7tisg8lv/kage-genotyper_372c74413f2245fe9766f2567954dc99/setup.py) egg_info for package kage-genotyper
2021-12-06T20:44:00,310     Created temporary directory: /tmp/pip-pip-egg-info-efdmq4wc
2021-12-06T20:44:00,310     Running command python setup.py egg_info
2021-12-06T20:44:02,511     running egg_info
2021-12-06T20:44:02,517     creating /tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info
2021-12-06T20:44:02,519     writing entry points to /tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/entry_points.txt
2021-12-06T20:44:02,522     writing top-level names to /tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/top_level.txt
2021-12-06T20:44:02,525     writing dependency_links to /tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/dependency_links.txt
2021-12-06T20:44:02,527     writing /tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/PKG-INFO
2021-12-06T20:44:02,532     writing requirements to /tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/requires.txt
2021-12-06T20:44:02,536     writing manifest file '/tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/SOURCES.txt'
2021-12-06T20:44:02,903     reading manifest file '/tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/SOURCES.txt'
2021-12-06T20:44:02,912     writing manifest file '/tmp/pip-pip-egg-info-efdmq4wc/kage_genotyper.egg-info/SOURCES.txt'
2021-12-06T20:44:03,045   Source in /tmp/pip-wheel-7tisg8lv/kage-genotyper_372c74413f2245fe9766f2567954dc99 has version 0.0.12, which satisfies requirement kage-genotyper==0.0.12 from https://files.pythonhosted.org/packages/6a/54/8aba286e135663aade36ea3d9a597062aee31798db5622527b438994c2c2/kage-genotyper-0.0.12.tar.gz#sha256=05a080b9cd4f9250b5d7b0cffc7189491a019c8bc454499ef0b4cd6fe0de58f7
2021-12-06T20:44:03,046   Removed kage-genotyper==0.0.12 from https://files.pythonhosted.org/packages/6a/54/8aba286e135663aade36ea3d9a597062aee31798db5622527b438994c2c2/kage-genotyper-0.0.12.tar.gz#sha256=05a080b9cd4f9250b5d7b0cffc7189491a019c8bc454499ef0b4cd6fe0de58f7 from build tracker '/tmp/pip-req-tracker-wm4tub2i'
2021-12-06T20:44:03,055 Created temporary directory: /tmp/pip-unpack-xig0v0sh
2021-12-06T20:44:03,056 Building wheels for collected packages: kage-genotyper
2021-12-06T20:44:03,065   Created temporary directory: /tmp/pip-wheel-efuo0334
2021-12-06T20:44:03,066   Building wheel for kage-genotyper (setup.py): started
2021-12-06T20:44:03,067   Destination directory: /tmp/pip-wheel-efuo0334
2021-12-06T20:44:03,067   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7tisg8lv/kage-genotyper_372c74413f2245fe9766f2567954dc99/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7tisg8lv/kage-genotyper_372c74413f2245fe9766f2567954dc99/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-efuo0334
2021-12-06T20:44:05,186   running bdist_wheel
2021-12-06T20:44:05,202   running build
2021-12-06T20:44:05,203   running build_py
2021-12-06T20:44:05,542   creating build
2021-12-06T20:44:05,543   creating build/lib
2021-12-06T20:44:05,545   creating build/lib/kage
2021-12-06T20:44:05,547   copying kage/numpy_genotyper.py -> build/lib/kage
2021-12-06T20:44:05,553   copying kage/node_counts.py -> build/lib/kage
2021-12-06T20:44:05,557   copying kage/helper_index_using_duplicate_counts.py -> build/lib/kage
2021-12-06T20:44:05,561   copying kage/helper_index.py -> build/lib/kage
2021-12-06T20:44:05,566   copying kage/joint_distribution.py -> build/lib/kage
2021-12-06T20:44:05,571   copying kage/variant_kmer_analyser.py -> build/lib/kage
2021-12-06T20:44:05,577   copying kage/command_line_interface.py -> build/lib/kage
2021-12-06T20:44:05,586   copying kage/util.py -> build/lib/kage
2021-12-06T20:44:05,591   copying kage/simulation.py -> build/lib/kage
2021-12-06T20:44:05,598   copying kage/tricky_variants.py -> build/lib/kage
2021-12-06T20:44:05,603   copying kage/variant_filtering.py -> build/lib/kage
2021-12-06T20:44:05,609   copying kage/genotyper.py -> build/lib/kage
2021-12-06T20:44:05,616   copying kage/__init__.py -> build/lib/kage
2021-12-06T20:44:05,621   copying kage/negative_binomial_model.py -> build/lib/kage
2021-12-06T20:44:05,627   copying kage/models.py -> build/lib/kage
2021-12-06T20:44:05,632   copying kage/analysis.py -> build/lib/kage
2021-12-06T20:44:05,639   copying kage/reference_kmers.py -> build/lib/kage
2021-12-06T20:44:05,644   copying kage/node_count_model.py -> build/lib/kage
2021-12-06T20:44:05,651   copying kage/reads.py -> build/lib/kage
2021-12-06T20:44:05,657   copying kage/combomodel.py -> build/lib/kage
2021-12-06T20:44:05,664   copying kage/combination_model_genotyper.py -> build/lib/kage
2021-12-06T20:44:05,688   installing to build/bdist.linux-armv7l/wheel
2021-12-06T20:44:05,689   running install
2021-12-06T20:44:05,691   running install_lib
2021-12-06T20:44:05,699   creating build/bdist.linux-armv7l
2021-12-06T20:44:05,700   creating build/bdist.linux-armv7l/wheel
2021-12-06T20:44:05,704   creating build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,706   copying build/lib/kage/numpy_genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,712   copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,716   copying build/lib/kage/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,721   copying build/lib/kage/helper_index.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,726   copying build/lib/kage/joint_distribution.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,730   copying build/lib/kage/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,736   copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,746   copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,751   copying build/lib/kage/simulation.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,758   copying build/lib/kage/tricky_variants.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,763   copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,769   copying build/lib/kage/genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,776   copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,781   copying build/lib/kage/negative_binomial_model.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,787   copying build/lib/kage/models.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,793   copying build/lib/kage/analysis.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,800   copying build/lib/kage/reference_kmers.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,806   copying build/lib/kage/node_count_model.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,813   copying build/lib/kage/reads.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,819   copying build/lib/kage/combomodel.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,826   copying build/lib/kage/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2021-12-06T20:44:05,831   running install_egg_info
2021-12-06T20:44:05,885   running egg_info
2021-12-06T20:44:05,886   writing top-level names to kage_genotyper.egg-info/top_level.txt
2021-12-06T20:44:05,889   writing requirements to kage_genotyper.egg-info/requires.txt
2021-12-06T20:44:05,891   writing entry points to kage_genotyper.egg-info/entry_points.txt
2021-12-06T20:44:05,893   writing kage_genotyper.egg-info/PKG-INFO
2021-12-06T20:44:05,897   writing dependency_links to kage_genotyper.egg-info/dependency_links.txt
2021-12-06T20:44:05,910   reading manifest file 'kage_genotyper.egg-info/SOURCES.txt'
2021-12-06T20:44:05,922   writing manifest file 'kage_genotyper.egg-info/SOURCES.txt'
2021-12-06T20:44:05,925   Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.12-py3.5.egg-info
2021-12-06T20:44:05,955   running install_scripts
2021-12-06T20:44:06,177   creating build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.12.dist-info/WHEEL
2021-12-06T20:44:06,479   Building wheel for kage-genotyper (setup.py): finished with status 'done'
2021-12-06T20:44:06,483   Created wheel for kage-genotyper: filename=kage_genotyper-0.0.12-py3-none-any.whl size=38428 sha256=7d3956620409c7b4f5acbfb7ba2f2c5b1ac4fa3761bc803d9500f4e627943de5
2021-12-06T20:44:06,484   Stored in directory: /tmp/pip-ephem-wheel-cache-2vfqoq1f/wheels/8a/74/72/41474c6d6bc9925b8018746498004b1c832f115f252336ee1b
2021-12-06T20:44:06,503 Successfully built kage-genotyper
2021-12-06T20:44:06,514 Removed build tracker: '/tmp/pip-req-tracker-wm4tub2i'