2021-12-07T02:06:03,563 Created temporary directory: /tmp/pip-ephem-wheel-cache-q9gk4nk6 2021-12-07T02:06:03,569 Created temporary directory: /tmp/pip-req-tracker-fiwh_3ja 2021-12-07T02:06:03,569 Initialized build tracking at /tmp/pip-req-tracker-fiwh_3ja 2021-12-07T02:06:03,570 Created build tracker: /tmp/pip-req-tracker-fiwh_3ja 2021-12-07T02:06:03,570 Entered build tracker: /tmp/pip-req-tracker-fiwh_3ja 2021-12-07T02:06:03,571 Created temporary directory: /tmp/pip-wheel-vy5998y7 2021-12-07T02:06:03,635 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-12-07T02:06:03,640 2 location(s) to search for versions of tredparse: 2021-12-07T02:06:03,640 * https://pypi.org/simple/tredparse/ 2021-12-07T02:06:03,640 * https://www.piwheels.org/simple/tredparse/ 2021-12-07T02:06:03,641 Fetching project page and analyzing links: https://pypi.org/simple/tredparse/ 2021-12-07T02:06:03,642 Getting page https://pypi.org/simple/tredparse/ 2021-12-07T02:06:03,645 Found index url https://pypi.org/simple 2021-12-07T02:06:03,921 Found link https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 (from https://pypi.org/simple/tredparse/), version: 0.7.5 2021-12-07T02:06:03,922 Found link https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 (from https://pypi.org/simple/tredparse/), version: 0.7.6 2021-12-07T02:06:03,922 Found link https://files.pythonhosted.org/packages/76/1c/2729e46ac407eb52816cbbac94b06d0f3669dc8a7c2ef4cb8976ab071bdc/tredparse-0.7.7.tar.gz#sha256=1aa435d1679ccc2d821e33c2a38fc626bba88178961dd2c8ab8ef761cd3846fc (from https://pypi.org/simple/tredparse/), version: 0.7.7 2021-12-07T02:06:03,923 Found link https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd (from https://pypi.org/simple/tredparse/), version: 0.7.8 2021-12-07T02:06:03,923 Found link https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6 (from https://pypi.org/simple/tredparse/), version: 1.1.12 2021-12-07T02:06:03,924 Fetching project page and analyzing links: https://www.piwheels.org/simple/tredparse/ 2021-12-07T02:06:03,925 Getting page https://www.piwheels.org/simple/tredparse/ 2021-12-07T02:06:03,927 Found index url https://www.piwheels.org/simple 2021-12-07T02:06:04,152 Skipping link: not a file: https://www.piwheels.org/simple/tredparse/ 2021-12-07T02:06:04,153 Skipping link: not a file: https://pypi.org/simple/tredparse/ 2021-12-07T02:06:04,186 Given no hashes to check 1 links for project 'tredparse': discarding no candidates 2021-12-07T02:06:04,215 Collecting tredparse==1.1.12 2021-12-07T02:06:04,218 Created temporary directory: /tmp/pip-unpack-wf1fzzpm 2021-12-07T02:06:04,309 Downloading tredparse-1.1.12.tar.gz (360 kB) 2021-12-07T02:06:04,716 Added tredparse==1.1.12 from https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6 to build tracker '/tmp/pip-req-tracker-fiwh_3ja' 2021-12-07T02:06:04,718 Running setup.py (path:/tmp/pip-wheel-vy5998y7/tredparse_8004ff49efbf4e43b7e06e049f608f23/setup.py) egg_info for package tredparse 2021-12-07T02:06:04,719 Created temporary directory: /tmp/pip-pip-egg-info-ukrtxb7d 2021-12-07T02:06:04,720 Preparing metadata (setup.py): started 2021-12-07T02:06:04,720 Running command python setup.py egg_info 2021-12-07T02:06:07,528 running egg_info 2021-12-07T02:06:07,533 creating /tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info 2021-12-07T02:06:07,534 writing /tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info/PKG-INFO 2021-12-07T02:06:07,539 writing dependency_links to /tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info/dependency_links.txt 2021-12-07T02:06:07,543 writing requirements to /tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info/requires.txt 2021-12-07T02:06:07,545 writing top-level names to /tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info/top_level.txt 2021-12-07T02:06:07,548 writing manifest file '/tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info/SOURCES.txt' 2021-12-07T02:06:07,563 /usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' 2021-12-07T02:06:07,564 warnings.warn(msg) 2021-12-07T02:06:07,564 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:490: UserWarning: Normalizing 'v1.1.12' to '1.1.12' 2021-12-07T02:06:07,565 warnings.warn(tmpl.format(**locals())) 2021-12-07T02:06:07,565 package init file 'tredparse/ssw/__init__.py' not found (or not a regular file) 2021-12-07T02:06:07,585 reading manifest file '/tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info/SOURCES.txt' 2021-12-07T02:06:07,588 reading manifest template 'MANIFEST.in' 2021-12-07T02:06:07,597 adding license file 'LICENSE' 2021-12-07T02:06:07,604 writing manifest file '/tmp/pip-pip-egg-info-ukrtxb7d/tredparse.egg-info/SOURCES.txt' 2021-12-07T02:06:07,772 Preparing metadata (setup.py): finished with status 'done' 2021-12-07T02:06:07,783 Source in /tmp/pip-wheel-vy5998y7/tredparse_8004ff49efbf4e43b7e06e049f608f23 has version 1.1.12, which satisfies requirement tredparse==1.1.12 from https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6 2021-12-07T02:06:07,785 Removed tredparse==1.1.12 from https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6 from build tracker '/tmp/pip-req-tracker-fiwh_3ja' 2021-12-07T02:06:07,795 Created temporary directory: /tmp/pip-unpack-fyx_uzzt 2021-12-07T02:06:07,796 Building wheels for collected packages: tredparse 2021-12-07T02:06:07,804 Created temporary directory: /tmp/pip-wheel-1uk17eva 2021-12-07T02:06:07,805 Building wheel for tredparse (setup.py): started 2021-12-07T02:06:07,806 Destination directory: /tmp/pip-wheel-1uk17eva 2021-12-07T02:06:07,806 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vy5998y7/tredparse_8004ff49efbf4e43b7e06e049f608f23/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vy5998y7/tredparse_8004ff49efbf4e43b7e06e049f608f23/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1uk17eva 2021-12-07T02:06:10,377 /usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' 2021-12-07T02:06:10,379 warnings.warn(msg) 2021-12-07T02:06:10,408 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:490: UserWarning: Normalizing 'v1.1.12' to '1.1.12' 2021-12-07T02:06:10,409 warnings.warn(tmpl.format(**locals())) 2021-12-07T02:06:10,516 running bdist_wheel 2021-12-07T02:06:10,524 running build 2021-12-07T02:06:10,525 running build_py 2021-12-07T02:06:10,536 creating build 2021-12-07T02:06:10,537 creating build/lib.linux-armv7l-3.7 2021-12-07T02:06:10,538 creating build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,540 copying tredparse/tredplot.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,545 copying tredparse/tred.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,550 copying tredparse/models.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,555 copying tredparse/tredreport.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,559 copying tredparse/jcvi.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,564 copying tredparse/_version.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,567 copying tredparse/bam_parser.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,572 copying tredparse/__init__.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,575 copying tredparse/meta.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,579 copying tredparse/utils.py -> build/lib.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,582 package init file 'tredparse/ssw/__init__.py' not found (or not a regular file) 2021-12-07T02:06:10,583 running egg_info 2021-12-07T02:06:10,600 writing tredparse.egg-info/PKG-INFO 2021-12-07T02:06:10,604 writing dependency_links to tredparse.egg-info/dependency_links.txt 2021-12-07T02:06:10,608 writing requirements to tredparse.egg-info/requires.txt 2021-12-07T02:06:10,610 writing top-level names to tredparse.egg-info/top_level.txt 2021-12-07T02:06:10,632 reading manifest file 'tredparse.egg-info/SOURCES.txt' 2021-12-07T02:06:10,636 reading manifest template 'MANIFEST.in' 2021-12-07T02:06:10,645 adding license file 'LICENSE' 2021-12-07T02:06:10,654 writing manifest file 'tredparse.egg-info/SOURCES.txt' 2021-12-07T02:06:10,664 creating build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,665 copying tredparse/data/HLI_bams.csv.gz -> build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,678 copying tredparse/data/TREDs.alts.csv -> build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,686 copying tredparse/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,691 copying tredparse/data/chrY.hg19.unique_ccn.gc -> build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,695 copying tredparse/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,700 copying tredparse/data/illumina_v3.pcrfree.stepmodel -> build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,703 copying tredparse/data/illumina_v3.pcrfree.stuttermodel -> build/lib.linux-armv7l-3.7/tredparse/data 2021-12-07T02:06:10,707 creating build/lib.linux-armv7l-3.7/tredparse/ssw 2021-12-07T02:06:10,708 copying tredparse/ssw/_ssw.c -> build/lib.linux-armv7l-3.7/tredparse/ssw 2021-12-07T02:06:10,745 copying tredparse/ssw/ssw.c -> build/lib.linux-armv7l-3.7/tredparse/ssw 2021-12-07T02:06:10,750 copying tredparse/ssw/ssw.h -> build/lib.linux-armv7l-3.7/tredparse/ssw 2021-12-07T02:06:10,755 creating build/lib.linux-armv7l-3.7/tredparse/ssw/sse2neon 2021-12-07T02:06:10,756 copying tredparse/ssw/sse2neon/emmintrin.h -> build/lib.linux-armv7l-3.7/tredparse/ssw/sse2neon 2021-12-07T02:06:10,764 copying tredparse/ssw/_ssw.pyx -> build/lib.linux-armv7l-3.7/tredparse/ssw 2021-12-07T02:06:10,774 UPDATING build/lib.linux-armv7l-3.7/tredparse/_version.py 2021-12-07T02:06:10,776 set build/lib.linux-armv7l-3.7/tredparse/_version.py to 'v1.1.12' 2021-12-07T02:06:10,776 running build_ext 2021-12-07T02:06:10,784 skipping 'tredparse/ssw/_ssw.c' Cython extension (up-to-date) 2021-12-07T02:06:10,785 building 'tredparse.ssw' extension 2021-12-07T02:06:10,786 creating build/temp.linux-armv7l-3.7 2021-12-07T02:06:10,786 creating build/temp.linux-armv7l-3.7/tredparse 2021-12-07T02:06:10,787 creating build/temp.linux-armv7l-3.7/tredparse/ssw 2021-12-07T02:06:10,788 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Itredparse/ssw -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c tredparse/ssw/_ssw.c -o build/temp.linux-armv7l-3.7/tredparse/ssw/_ssw.o -O3 2021-12-07T02:06:11,509 In file included from tredparse/ssw/_ssw.c:619: 2021-12-07T02:06:11,509 tredparse/ssw/ssw.h:17:10: fatal error: emmintrin.h: No such file or directory 2021-12-07T02:06:11,510 #include 2021-12-07T02:06:11,510 ^~~~~~~~~~~~~ 2021-12-07T02:06:11,510 compilation terminated. 2021-12-07T02:06:11,519 error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1 2021-12-07T02:06:11,718 Building wheel for tredparse (setup.py): finished with status 'error' 2021-12-07T02:06:11,719 ERROR: Failed building wheel for tredparse 2021-12-07T02:06:11,720 Running setup.py clean for tredparse 2021-12-07T02:06:11,721 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vy5998y7/tredparse_8004ff49efbf4e43b7e06e049f608f23/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vy5998y7/tredparse_8004ff49efbf4e43b7e06e049f608f23/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-12-07T02:06:14,295 /usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' 2021-12-07T02:06:14,296 warnings.warn(msg) 2021-12-07T02:06:14,326 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:490: UserWarning: Normalizing 'v1.1.12' to '1.1.12' 2021-12-07T02:06:14,327 warnings.warn(tmpl.format(**locals())) 2021-12-07T02:06:14,394 running clean 2021-12-07T02:06:14,398 removing 'build/temp.linux-armv7l-3.7' (and everything under it) 2021-12-07T02:06:14,402 removing 'build/lib.linux-armv7l-3.7' (and everything under it) 2021-12-07T02:06:14,553 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-12-07T02:06:14,553 'build/scripts-3.7' does not exist -- can't clean it 2021-12-07T02:06:14,554 removing 'build' 2021-12-07T02:06:14,723 Failed to build tredparse 2021-12-07T02:06:14,724 ERROR: Failed to build one or more wheels 2021-12-07T02:06:14,726 Exception information: 2021-12-07T02:06:14,726 Traceback (most recent call last): 2021-12-07T02:06:14,726 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 164, in exc_logging_wrapper 2021-12-07T02:06:14,726 status = run_func(*args) 2021-12-07T02:06:14,726 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-12-07T02:06:14,726 return func(self, options, args) 2021-12-07T02:06:14,726 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 175, in run 2021-12-07T02:06:14,726 raise CommandError("Failed to build one or more wheels") 2021-12-07T02:06:14,726 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-12-07T02:06:14,732 Removed build tracker: '/tmp/pip-req-tracker-fiwh_3ja'