2021-12-07T09:17:08,620 Created temporary directory: /tmp/pip-ephem-wheel-cache-d2qe4bn3
2021-12-07T09:17:08,625 Created temporary directory: /tmp/pip-req-tracker-0hy2ev9d
2021-12-07T09:17:08,626 Initialized build tracking at /tmp/pip-req-tracker-0hy2ev9d
2021-12-07T09:17:08,626 Created build tracker: /tmp/pip-req-tracker-0hy2ev9d
2021-12-07T09:17:08,626 Entered build tracker: /tmp/pip-req-tracker-0hy2ev9d
2021-12-07T09:17:08,628 Created temporary directory: /tmp/pip-wheel-d4st8tap
2021-12-07T09:17:08,682 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-07T09:17:08,687 2 location(s) to search for versions of tredparse:
2021-12-07T09:17:08,687 * https://pypi.org/simple/tredparse/
2021-12-07T09:17:08,687 * https://www.piwheels.org/simple/tredparse/
2021-12-07T09:17:08,688 Fetching project page and analyzing links: https://pypi.org/simple/tredparse/
2021-12-07T09:17:08,689 Getting page https://pypi.org/simple/tredparse/
2021-12-07T09:17:08,692 Found index url https://pypi.org/simple
2021-12-07T09:17:08,960   Found link https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 (from https://pypi.org/simple/tredparse/), version: 0.7.5
2021-12-07T09:17:08,961   Found link https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 (from https://pypi.org/simple/tredparse/), version: 0.7.6
2021-12-07T09:17:08,962   Found link https://files.pythonhosted.org/packages/76/1c/2729e46ac407eb52816cbbac94b06d0f3669dc8a7c2ef4cb8976ab071bdc/tredparse-0.7.7.tar.gz#sha256=1aa435d1679ccc2d821e33c2a38fc626bba88178961dd2c8ab8ef761cd3846fc (from https://pypi.org/simple/tredparse/), version: 0.7.7
2021-12-07T09:17:08,963   Found link https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd (from https://pypi.org/simple/tredparse/), version: 0.7.8
2021-12-07T09:17:08,963   Found link https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6 (from https://pypi.org/simple/tredparse/), version: 1.1.12
2021-12-07T09:17:08,964 Fetching project page and analyzing links: https://www.piwheels.org/simple/tredparse/
2021-12-07T09:17:08,964 Getting page https://www.piwheels.org/simple/tredparse/
2021-12-07T09:17:08,966 Found index url https://www.piwheels.org/simple
2021-12-07T09:17:09,233 Skipping link: not a file: https://www.piwheels.org/simple/tredparse/
2021-12-07T09:17:09,234 Skipping link: not a file: https://pypi.org/simple/tredparse/
2021-12-07T09:17:09,271 Given no hashes to check 1 links for project 'tredparse': discarding no candidates
2021-12-07T09:17:09,305 Collecting tredparse==1.1.12
2021-12-07T09:17:09,307   Created temporary directory: /tmp/pip-unpack-odountog
2021-12-07T09:17:09,392   Downloading tredparse-1.1.12.tar.gz (360 kB)
2021-12-07T09:17:09,770   Added tredparse==1.1.12 from https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6 to build tracker '/tmp/pip-req-tracker-0hy2ev9d'
2021-12-07T09:17:09,772   Running setup.py (path:/tmp/pip-wheel-d4st8tap/tredparse_8d3eab3bf7364f3a85329b895a3fd730/setup.py) egg_info for package tredparse
2021-12-07T09:17:09,773   Created temporary directory: /tmp/pip-pip-egg-info-b6482qhf
2021-12-07T09:17:09,773   Preparing metadata (setup.py): started
2021-12-07T09:17:09,774   Running command python setup.py egg_info
2021-12-07T09:17:12,299   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires'
2021-12-07T09:17:12,301     warnings.warn(msg)
2021-12-07T09:17:12,330   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:490: UserWarning: Normalizing 'v1.1.12' to '1.1.12'
2021-12-07T09:17:12,331     warnings.warn(tmpl.format(**locals()))
2021-12-07T09:17:12,403   running egg_info
2021-12-07T09:17:12,407   creating /tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info
2021-12-07T09:17:12,408   writing /tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info/PKG-INFO
2021-12-07T09:17:12,413   writing dependency_links to /tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info/dependency_links.txt
2021-12-07T09:17:12,417   writing requirements to /tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info/requires.txt
2021-12-07T09:17:12,418   writing top-level names to /tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info/top_level.txt
2021-12-07T09:17:12,421   writing manifest file '/tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info/SOURCES.txt'
2021-12-07T09:17:12,432   package init file 'tredparse/ssw/__init__.py' not found (or not a regular file)
2021-12-07T09:17:12,455   reading manifest file '/tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info/SOURCES.txt'
2021-12-07T09:17:12,458   reading manifest template 'MANIFEST.in'
2021-12-07T09:17:12,466   adding license file 'LICENSE'
2021-12-07T09:17:12,472   writing manifest file '/tmp/pip-pip-egg-info-b6482qhf/tredparse.egg-info/SOURCES.txt'
2021-12-07T09:17:12,645   Preparing metadata (setup.py): finished with status 'done'
2021-12-07T09:17:12,653   Source in /tmp/pip-wheel-d4st8tap/tredparse_8d3eab3bf7364f3a85329b895a3fd730 has version 1.1.12, which satisfies requirement tredparse==1.1.12 from https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6
2021-12-07T09:17:12,655   Removed tredparse==1.1.12 from https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz#sha256=ff6363365a76952106101fa5d27ccae09ee960ed6d9ea4c6437a0139cf9081b6 from build tracker '/tmp/pip-req-tracker-0hy2ev9d'
2021-12-07T09:17:12,664 Created temporary directory: /tmp/pip-unpack-5wktf5pd
2021-12-07T09:17:12,665 Building wheels for collected packages: tredparse
2021-12-07T09:17:12,673   Created temporary directory: /tmp/pip-wheel-pybxfdca
2021-12-07T09:17:12,673   Building wheel for tredparse (setup.py): started
2021-12-07T09:17:12,674   Destination directory: /tmp/pip-wheel-pybxfdca
2021-12-07T09:17:12,675   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-d4st8tap/tredparse_8d3eab3bf7364f3a85329b895a3fd730/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-d4st8tap/tredparse_8d3eab3bf7364f3a85329b895a3fd730/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pybxfdca
2021-12-07T09:17:15,060   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires'
2021-12-07T09:17:15,061     warnings.warn(msg)
2021-12-07T09:17:15,089   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:490: UserWarning: Normalizing 'v1.1.12' to '1.1.12'
2021-12-07T09:17:15,090     warnings.warn(tmpl.format(**locals()))
2021-12-07T09:17:15,203   running bdist_wheel
2021-12-07T09:17:15,211   running build
2021-12-07T09:17:15,212   running build_py
2021-12-07T09:17:15,222   creating build
2021-12-07T09:17:15,223   creating build/lib.linux-armv7l-3.9
2021-12-07T09:17:15,223   creating build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,225   copying tredparse/_version.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,228   copying tredparse/tredplot.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,232   copying tredparse/bam_parser.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,238   copying tredparse/meta.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,241   copying tredparse/jcvi.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,246   copying tredparse/utils.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,250   copying tredparse/tred.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,255   copying tredparse/tredreport.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,260   copying tredparse/__init__.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,263   copying tredparse/models.py -> build/lib.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,267   package init file 'tredparse/ssw/__init__.py' not found (or not a regular file)
2021-12-07T09:17:15,268   running egg_info
2021-12-07T09:17:15,284   writing tredparse.egg-info/PKG-INFO
2021-12-07T09:17:15,287   writing dependency_links to tredparse.egg-info/dependency_links.txt
2021-12-07T09:17:15,290   writing requirements to tredparse.egg-info/requires.txt
2021-12-07T09:17:15,292   writing top-level names to tredparse.egg-info/top_level.txt
2021-12-07T09:17:15,314   reading manifest file 'tredparse.egg-info/SOURCES.txt'
2021-12-07T09:17:15,318   reading manifest template 'MANIFEST.in'
2021-12-07T09:17:15,327   adding license file 'LICENSE'
2021-12-07T09:17:15,334   writing manifest file 'tredparse.egg-info/SOURCES.txt'
2021-12-07T09:17:15,343   creating build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,344   copying tredparse/data/HLI_bams.csv.gz -> build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,356   copying tredparse/data/TREDs.alts.csv -> build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,364   copying tredparse/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,370   copying tredparse/data/chrY.hg19.unique_ccn.gc -> build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,376   copying tredparse/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,381   copying tredparse/data/illumina_v3.pcrfree.stepmodel -> build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,385   copying tredparse/data/illumina_v3.pcrfree.stuttermodel -> build/lib.linux-armv7l-3.9/tredparse/data
2021-12-07T09:17:15,389   creating build/lib.linux-armv7l-3.9/tredparse/ssw
2021-12-07T09:17:15,391   copying tredparse/ssw/_ssw.c -> build/lib.linux-armv7l-3.9/tredparse/ssw
2021-12-07T09:17:15,437   copying tredparse/ssw/ssw.c -> build/lib.linux-armv7l-3.9/tredparse/ssw
2021-12-07T09:17:15,443   copying tredparse/ssw/ssw.h -> build/lib.linux-armv7l-3.9/tredparse/ssw
2021-12-07T09:17:15,447   creating build/lib.linux-armv7l-3.9/tredparse/ssw/sse2neon
2021-12-07T09:17:15,449   copying tredparse/ssw/sse2neon/emmintrin.h -> build/lib.linux-armv7l-3.9/tredparse/ssw/sse2neon
2021-12-07T09:17:15,458   copying tredparse/ssw/_ssw.pyx -> build/lib.linux-armv7l-3.9/tredparse/ssw
2021-12-07T09:17:15,467   UPDATING build/lib.linux-armv7l-3.9/tredparse/_version.py
2021-12-07T09:17:15,469   set build/lib.linux-armv7l-3.9/tredparse/_version.py to 'v1.1.12'
2021-12-07T09:17:15,470   running build_ext
2021-12-07T09:17:15,478   skipping 'tredparse/ssw/_ssw.c' Cython extension (up-to-date)
2021-12-07T09:17:15,478   building 'tredparse.ssw' extension
2021-12-07T09:17:15,479   creating build/temp.linux-armv7l-3.9
2021-12-07T09:17:15,480   creating build/temp.linux-armv7l-3.9/tredparse
2021-12-07T09:17:15,481   creating build/temp.linux-armv7l-3.9/tredparse/ssw
2021-12-07T09:17:15,482   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Itredparse/ssw -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tredparse/ssw/_ssw.c -o build/temp.linux-armv7l-3.9/tredparse/ssw/_ssw.o -O3
2021-12-07T09:17:16,243   In file included from tredparse/ssw/_ssw.c:619:
2021-12-07T09:17:16,244   tredparse/ssw/ssw.h:17:10: fatal error: emmintrin.h: No such file or directory
2021-12-07T09:17:16,245      17 | #include <emmintrin.h>
2021-12-07T09:17:16,245         |          ^~~~~~~~~~~~~
2021-12-07T09:17:16,245   compilation terminated.
2021-12-07T09:17:16,254   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-12-07T09:17:16,463   Building wheel for tredparse (setup.py): finished with status 'error'
2021-12-07T09:17:16,464   ERROR: Failed building wheel for tredparse
2021-12-07T09:17:16,465   Running setup.py clean for tredparse
2021-12-07T09:17:16,466   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-d4st8tap/tredparse_8d3eab3bf7364f3a85329b895a3fd730/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-d4st8tap/tredparse_8d3eab3bf7364f3a85329b895a3fd730/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-12-07T09:17:18,863   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires'
2021-12-07T09:17:18,864     warnings.warn(msg)
2021-12-07T09:17:18,892   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:490: UserWarning: Normalizing 'v1.1.12' to '1.1.12'
2021-12-07T09:17:18,893     warnings.warn(tmpl.format(**locals()))
2021-12-07T09:17:18,956   running clean
2021-12-07T09:17:18,960   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-12-07T09:17:18,964   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-12-07T09:17:18,984   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-12-07T09:17:18,984   'build/scripts-3.9' does not exist -- can't clean it
2021-12-07T09:17:18,985   removing 'build'
2021-12-07T09:17:19,157 Failed to build tredparse
2021-12-07T09:17:19,158 ERROR: Failed to build one or more wheels
2021-12-07T09:17:19,159 Exception information:
2021-12-07T09:17:19,159 Traceback (most recent call last):
2021-12-07T09:17:19,159   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 164, in exc_logging_wrapper
2021-12-07T09:17:19,159     status = run_func(*args)
2021-12-07T09:17:19,159   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-12-07T09:17:19,159     return func(self, options, args)
2021-12-07T09:17:19,159   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 175, in run
2021-12-07T09:17:19,159     raise CommandError("Failed to build one or more wheels")
2021-12-07T09:17:19,159 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-12-07T09:17:19,165 Removed build tracker: '/tmp/pip-req-tracker-0hy2ev9d'