2021-12-07T14:26:50,559 Created temporary directory: /tmp/pip-ephem-wheel-cache-eq4j3uid 2021-12-07T14:26:50,564 Created temporary directory: /tmp/pip-req-tracker-qnnc8t8t 2021-12-07T14:26:50,565 Initialized build tracking at /tmp/pip-req-tracker-qnnc8t8t 2021-12-07T14:26:50,565 Created build tracker: /tmp/pip-req-tracker-qnnc8t8t 2021-12-07T14:26:50,566 Entered build tracker: /tmp/pip-req-tracker-qnnc8t8t 2021-12-07T14:26:50,567 Created temporary directory: /tmp/pip-wheel-qo7mnb3t 2021-12-07T14:26:50,629 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-12-07T14:26:50,634 2 location(s) to search for versions of whatshap: 2021-12-07T14:26:50,634 * https://pypi.org/simple/whatshap/ 2021-12-07T14:26:50,634 * https://www.piwheels.org/simple/whatshap/ 2021-12-07T14:26:50,635 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/ 2021-12-07T14:26:50,636 Getting page https://pypi.org/simple/whatshap/ 2021-12-07T14:26:50,639 Found index url https://pypi.org/simple 2021-12-07T14:26:50,873 Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz#sha256=beaadbc79e4d463b5e441b8e9a13b5345c07db3d91fb093cee1bfebfebae4442 (from https://pypi.org/simple/whatshap/), version: 0.9 2021-12-07T14:26:50,874 Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz#sha256=864d4ecfc33eac7265452f5a2f468a830779afc53e723119ecac5ecf73255acc (from https://pypi.org/simple/whatshap/), version: 0.10 2021-12-07T14:26:50,875 Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz#sha256=d0367a4dd0adf288d30a9a87b565e4f141745bec3ea825cb85ac3409a593bde9 (from https://pypi.org/simple/whatshap/), version: 0.11 2021-12-07T14:26:50,876 Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz#sha256=c65060155dc901e4d4bd48077706660e5b214540d4dc20575a8b2146fb6a11f9 (from https://pypi.org/simple/whatshap/), version: 0.12 2021-12-07T14:26:50,876 Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz#sha256=529646db74b2cac9f12ebd530bd7bb40cb073c367894bf66c5994c1d7f32b56a (from https://pypi.org/simple/whatshap/), version: 0.13 2021-12-07T14:26:50,877 Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz#sha256=dd6076e67c5a4ce75d2510b3dbdd3c1e524124be62655f06c82f7d9fce4c5643 (from https://pypi.org/simple/whatshap/), version: 0.14 2021-12-07T14:26:50,877 Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz#sha256=7b5781f1138b1830c4627451d1d5c77e7f2a3c5403510d9ab2a63f545911415b (from https://pypi.org/simple/whatshap/), version: 0.14.1 2021-12-07T14:26:50,878 Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz#sha256=2dc9d89d71cf99e10c71b6138edd456bfcf0d7355794bc3491078654df85bc38 (from https://pypi.org/simple/whatshap/), version: 0.15 2021-12-07T14:26:50,879 Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz#sha256=1df54d8705fb0451cc0a640918842481087f7b741778dfb4100cc1f4f60f48fe (from https://pypi.org/simple/whatshap/), version: 0.16 2021-12-07T14:26:50,879 Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz#sha256=8ad1c66789fe5fe957b3695902dae3c3fd4e67f79b9e349b92b532e9ff618933 (from https://pypi.org/simple/whatshap/), version: 0.17 2021-12-07T14:26:50,880 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl#sha256=4a09adc24c6db3bd525667ac2559181dc94ee203a64f488dfce1ac38cbf44ba5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:50,880 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl#sha256=1c99980629655e58a34496b0e1b1c9123dddd0797a13cf681dcf83f92a6f33e0 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:50,881 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl#sha256=fdadadbed86cc7a7abd8f9ef3d55fe280eda957473db03dc30ad06ace6b877bd (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:50,881 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl#sha256=2e189cb51c2527444dada90f8fd2355ddfe8d9d35aca386330e63bc46c2d2699 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:50,883 Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz#sha256=c566130eca57fe9e34f5193390856dc44171c397f9708c49fcbf204e575b6695 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18 2021-12-07T14:26:50,883 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl#sha256=ff945c6a0406f328771dbbc86970bd48a0327833ca8e96ad836a55ab32ae99d4 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,884 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl#sha256=78bacd81697878129a6ff39f9474792f85b95e6fde7bfa30371b87a24d5e9d3a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,884 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl#sha256=62318377e996d1f3040cbfdb3462a3140dbdfd4113584c9000b530ca70bbf223 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,885 Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz#sha256=fcf0495793998da94054bdc4c6d6f3f6b145a7befa07ac96275e5e2272979aa2 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0 2021-12-07T14:26:50,886 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl#sha256=93af99ab08fac60bb3e46cde68978619f095e1b47490f59e4085f338ad715b46 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,886 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl#sha256=94c04469069a87636c8aaf88d9f3e33022864de633327fedfdedd8da2bc4c6aa (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,887 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl#sha256=7821711be901f898437a6be4993a15e77edbb59683ffa76d3dc9bc1bf855769a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,887 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl#sha256=9e3a3169de452412c4e5cfe3220c0d51178d4811f33183e53069c57de49253ae (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,889 Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz#sha256=4e6486e6ce2babf55a225dd9e0030df6fcc27629d34803428cbe88a79137bb6f (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1 2021-12-07T14:26:50,889 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=cb4a11ab89e8b71ad557dd404bb80e41a9990812190d42a2d6389f1b0157d8af (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,890 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=ebea3b0418f817764f171cd151586fedcde6d43cf9c8b8ad744b9f209aabb775 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,890 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/43/09/3fe5c7130f5356b2b7b911539b52c090e2ee6532c14fc3f29fdbf6c2b569/whatshap-1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=29058e18ef6916b4a0285691617e41b1246b61460c8962fd578a2de17009834b (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,891 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d1/af/55a5fe140b3a0491c7a19b961b8b6275573194827fb52c17908b2e2699b5/whatshap-1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=363927b1d9eb491bd80db6e917dc9b5926e2886f041126a0157c1f852d8ec766 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,892 Found link https://files.pythonhosted.org/packages/24/ba/a6b7ded0e342f0cdeb268e0e92b1c0812ca9c0804e11efc8c4e7e5cb6be9/whatshap-1.2.tar.gz#sha256=e8d55c5c9a3e0c681f0d4dccdaa9096cbfffc440d9ea9ec6be51918bdaaa87c5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2 2021-12-07T14:26:50,892 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=11a7b10eef76a40dabb98226c774d048c62140d033da474aebb9a5e27b300fb3 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,893 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=b53bb0c0b4298622256ca8b32d0c16108f99e7fa8bbf50bab109b6359685e538 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,893 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=08e79b8e86c9b8d47e5a0dac79bac3c66f984d6eb93b9649901b67b1a0545af5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,894 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=f152af4c4dc555820596121472bf44f5554370e641d70c332d3de6e624bf5e27 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-12-07T14:26:50,895 Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz#sha256=123a3282fc5e1eacd7fe1bf953735ddc3f0cedacb469f05c3a90233b76ef3cb8 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1 2021-12-07T14:26:50,896 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/ 2021-12-07T14:26:50,896 Getting page https://www.piwheels.org/simple/whatshap/ 2021-12-07T14:26:50,898 Found index url https://www.piwheels.org/simple 2021-12-07T14:26:51,167 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv6l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,168 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv7l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,168 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv6l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,169 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv7l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,169 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv6l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,170 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv7l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,170 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv6l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,171 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv7l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,171 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv6l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,172 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv7l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,172 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv6l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,173 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv7l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,173 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv6l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,174 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv7l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,174 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv6l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,174 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv7l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,175 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,175 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,176 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,176 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,177 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,177 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv6l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,181 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv7l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,181 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv6l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,181 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv7l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from 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https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv7l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,184 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv6l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,184 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv7l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,184 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv6l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:51,185 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:51,185 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv6l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:51,186 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv7l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:51,186 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:51,187 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2021-12-07T14:26:51,187 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv6l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,188 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv7l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,188 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,188 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2021-12-07T14:26:51,189 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/ 2021-12-07T14:26:51,189 Skipping link: not a file: https://pypi.org/simple/whatshap/ 2021-12-07T14:26:51,233 Given no hashes to check 1 links for project 'whatshap': discarding no candidates 2021-12-07T14:26:51,271 Collecting whatshap==1.2.1 2021-12-07T14:26:51,274 Created temporary directory: /tmp/pip-unpack-f8cjvl4a 2021-12-07T14:26:51,365 Downloading whatshap-1.2.1.tar.gz (5.1 MB) 2021-12-07T14:26:54,244 Added whatshap==1.2.1 from https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz#sha256=123a3282fc5e1eacd7fe1bf953735ddc3f0cedacb469f05c3a90233b76ef3cb8 to build tracker '/tmp/pip-req-tracker-qnnc8t8t' 2021-12-07T14:26:54,257 Created temporary directory: /tmp/pip-build-env-f5v16avq 2021-12-07T14:26:54,279 Created temporary directory: /tmp/pip-standalone-pip-v9tg9m7j 2021-12-07T14:26:55,914 Installing build dependencies: started 2021-12-07T14:26:55,915 Running command /usr/bin/python3 /tmp/pip-standalone-pip-v9tg9m7j/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-f5v16avq/overlay --no-warn-script-location -v --no-binary whatshap --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=43' wheel setuptools_scm 'cython~=0.29.20' 2021-12-07T14:27:04,568 Using pip 21.3.1 from /tmp/pip-standalone-pip-v9tg9m7j/__env_pip__.zip/pip (python 3.9) 2021-12-07T14:27:05,366 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-12-07T14:27:09,842 Collecting setuptools>=43 2021-12-07T14:27:10,062 Using cached https://www.piwheels.org/simple/setuptools/setuptools-59.5.0-py3-none-any.whl (952 kB) 2021-12-07T14:27:10,761 Collecting wheel 2021-12-07T14:27:10,792 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.0-py2.py3-none-any.whl (35 kB) 2021-12-07T14:27:11,866 Collecting setuptools_scm 2021-12-07T14:27:11,897 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-6.3.2-py3-none-any.whl (33 kB) 2021-12-07T14:27:16,361 Collecting cython~=0.29.20 2021-12-07T14:27:17,389 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.25-cp39-cp39-linux_armv7l.whl (4.9 MB) 2021-12-07T14:27:18,467 Collecting packaging>=20.0 2021-12-07T14:27:18,498 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2021-12-07T14:27:18,784 Collecting tomli>=1.0.0 2021-12-07T14:27:18,797 Using cached tomli-1.2.2-py3-none-any.whl (12 kB) 2021-12-07T14:27:19,646 Collecting pyparsing!=3.0.5,>=2.0.2 2021-12-07T14:27:19,694 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.6-py3-none-any.whl (97 kB) 2021-12-07T14:27:22,670 Installing collected packages: pyparsing, tomli, setuptools, packaging, wheel, setuptools-scm, cython 2021-12-07T14:27:26,971 Creating /tmp/pip-build-env-f5v16avq/overlay/bin 2021-12-07T14:27:26,974 changing mode of /tmp/pip-build-env-f5v16avq/overlay/bin/wheel to 755 2021-12-07T14:27:33,114 changing mode of /tmp/pip-build-env-f5v16avq/overlay/bin/cygdb to 755 2021-12-07T14:27:33,117 changing mode of /tmp/pip-build-env-f5v16avq/overlay/bin/cython to 755 2021-12-07T14:27:33,120 changing mode of /tmp/pip-build-env-f5v16avq/overlay/bin/cythonize to 755 2021-12-07T14:27:33,179 Successfully installed cython-0.29.25 packaging-21.3 pyparsing-3.0.6 setuptools-59.5.0 setuptools-scm-6.3.2 tomli-1.2.2 wheel-0.37.0 2021-12-07T14:27:33,865 Installing build dependencies: finished with status 'done' 2021-12-07T14:27:33,886 Getting requirements to build wheel: started 2021-12-07T14:27:33,886 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp0tjucoeg 2021-12-07T14:27:37,850 running egg_info 2021-12-07T14:27:37,854 writing whatshap.egg-info/PKG-INFO 2021-12-07T14:27:37,857 writing dependency_links to whatshap.egg-info/dependency_links.txt 2021-12-07T14:27:37,860 writing entry points to whatshap.egg-info/entry_points.txt 2021-12-07T14:27:37,862 writing requirements to whatshap.egg-info/requires.txt 2021-12-07T14:27:37,864 writing top-level names to whatshap.egg-info/top_level.txt 2021-12-07T14:27:38,067 listing git files failed - pretending there aren't any 2021-12-07T14:27:38,086 reading manifest file 'whatshap.egg-info/SOURCES.txt' 2021-12-07T14:27:38,175 reading manifest template 'MANIFEST.in' 2021-12-07T14:27:38,200 adding license file 'LICENSE' 2021-12-07T14:27:38,233 writing manifest file 'whatshap.egg-info/SOURCES.txt' 2021-12-07T14:27:38,441 Getting requirements to build wheel: finished with status 'done' 2021-12-07T14:27:38,466 Created temporary directory: /tmp/pip-modern-metadata-7njq0rgj 2021-12-07T14:27:38,472 Preparing metadata (pyproject.toml): started 2021-12-07T14:27:38,473 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpajsaqjve 2021-12-07T14:27:41,941 running dist_info 2021-12-07T14:27:41,967 creating /tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info 2021-12-07T14:27:41,968 writing /tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/PKG-INFO 2021-12-07T14:27:41,972 writing dependency_links to /tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/dependency_links.txt 2021-12-07T14:27:41,975 writing entry points to /tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/entry_points.txt 2021-12-07T14:27:41,977 writing requirements to /tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/requires.txt 2021-12-07T14:27:41,979 writing top-level names to /tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/top_level.txt 2021-12-07T14:27:41,982 writing manifest file '/tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/SOURCES.txt' 2021-12-07T14:27:42,168 listing git files failed - pretending there aren't any 2021-12-07T14:27:42,186 reading manifest file '/tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/SOURCES.txt' 2021-12-07T14:27:42,190 reading manifest template 'MANIFEST.in' 2021-12-07T14:27:42,210 adding license file 'LICENSE' 2021-12-07T14:27:42,225 writing manifest file '/tmp/pip-modern-metadata-7njq0rgj/whatshap.egg-info/SOURCES.txt' 2021-12-07T14:27:42,228 creating '/tmp/pip-modern-metadata-7njq0rgj/whatshap.dist-info' 2021-12-07T14:27:42,362 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-12-07T14:27:42,587 Preparing metadata (pyproject.toml): finished with status 'done' 2021-12-07T14:27:42,599 Source in /tmp/pip-wheel-qo7mnb3t/whatshap_0435172248704ead9125d7bc4a42c172 has version 1.2.1, which satisfies requirement whatshap==1.2.1 from https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz#sha256=123a3282fc5e1eacd7fe1bf953735ddc3f0cedacb469f05c3a90233b76ef3cb8 2021-12-07T14:27:42,600 Removed whatshap==1.2.1 from https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz#sha256=123a3282fc5e1eacd7fe1bf953735ddc3f0cedacb469f05c3a90233b76ef3cb8 from build tracker '/tmp/pip-req-tracker-qnnc8t8t' 2021-12-07T14:27:42,613 Created temporary directory: /tmp/pip-unpack-cioi70u3 2021-12-07T14:27:42,614 Building wheels for collected packages: whatshap 2021-12-07T14:27:42,621 Created temporary directory: /tmp/pip-wheel-7ekmcjx9 2021-12-07T14:27:42,622 Destination directory: /tmp/pip-wheel-7ekmcjx9 2021-12-07T14:27:42,626 Building wheel for whatshap (pyproject.toml): started 2021-12-07T14:27:42,627 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmps4vdouan 2021-12-07T14:27:46,126 running bdist_wheel 2021-12-07T14:27:46,133 running build 2021-12-07T14:27:46,134 running build_py 2021-12-07T14:27:46,181 creating build 2021-12-07T14:27:46,182 creating build/lib.linux-armv7l-3.9 2021-12-07T14:27:46,183 creating build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,186 copying whatshap/threading.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,191 copying whatshap/variant.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,194 copying whatshap/args.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,197 copying whatshap/pedigree.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,202 copying whatshap/graph.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,205 copying whatshap/__main__.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,208 copying whatshap/__init__.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,211 copying whatshap/bam.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,215 copying whatshap/math.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,218 copying whatshap/polyphaseplots.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,223 copying whatshap/testhelpers.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,227 copying whatshap/merge.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,231 copying whatshap/utils.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,234 copying whatshap/verification.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,238 copying whatshap/vcf.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,244 copying whatshap/_version.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,247 copying whatshap/coverage.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,250 copying whatshap/timer.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,254 copying whatshap/variants.py -> build/lib.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,262 creating build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,263 copying whatshap/cli/haplotag.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,268 copying whatshap/cli/genotype.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,273 copying whatshap/cli/find_snv_candidates.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,277 copying whatshap/cli/hapcut2vcf.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,281 copying whatshap/cli/__init__.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,285 copying whatshap/cli/polyphase.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,292 copying whatshap/cli/phase.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,298 copying whatshap/cli/split.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,303 copying whatshap/cli/stats.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,308 copying whatshap/cli/compare.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,314 copying whatshap/cli/unphase.py -> build/lib.linux-armv7l-3.9/whatshap/cli 2021-12-07T14:27:46,322 running build_ext 2021-12-07T14:27:46,336 building 'whatshap.core' extension 2021-12-07T14:27:46,339 creating build/temp.linux-armv7l-3.9 2021-12-07T14:27:46,339 creating build/temp.linux-armv7l-3.9/src 2021-12-07T14:27:46,343 creating build/temp.linux-armv7l-3.9/src/hapchat 2021-12-07T14:27:46,345 creating build/temp.linux-armv7l-3.9/src/polyphase 2021-12-07T14:27:46,347 creating build/temp.linux-armv7l-3.9/whatshap 2021-12-07T14:27:46,347 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-3.9/src/backwardcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:27:49,864 In file included from /usr/include/c++/10/cassert:44, 2021-12-07T14:27:49,864 from src/backwardcolumniterator.cpp:1: 2021-12-07T14:27:49,865 src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’: 2021-12-07T14:27:49,865 src/backwardcolumniterator.cpp:121:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-12-07T14:27:49,865 121 | assert(k < positions->size()); 2021-12-07T14:27:49,865 | ~~^~~~~~~~~~~~~~~~~~~ 2021-12-07T14:27:49,868 src/backwardcolumniterator.cpp:140:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-12-07T14:27:49,868 140 | assert(active_entry < read->getVariantCount()); 2021-12-07T14:27:49,869 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-12-07T14:27:53,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/binomial.cpp -o build/temp.linux-armv7l-3.9/src/binomial.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:27:53,580 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-3.9/src/columnindexingiterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:27:55,966 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’: 2021-12-07T14:27:55,966 src/columnindexingiterator.cpp:90:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-12-07T14:27:55,967 90 | for(int j=0; j< parent->read_ids.size(); ++j) { 2021-12-07T14:27:55,967 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-12-07T14:27:55,968 src/columnindexingiterator.cpp:92:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:27:55,968 92 | if(m != -1) { 2021-12-07T14:27:55,968 | ~~^~~~~ 2021-12-07T14:27:55,969 src/columnindexingiterator.cpp:89:15: warning: unused variable ‘s’ [-Wunused-variable] 2021-12-07T14:27:55,969 89 | unsigned int s = 1; 2021-12-07T14:27:55,969 | ^ 2021-12-07T14:27:56,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-3.9/src/columnindexingscheme.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:27:58,932 src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector&)’: 2021-12-07T14:27:58,933 src/columnindexingscheme.cpp:22:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-12-07T14:27:58,933 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-12-07T14:27:58,934 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-12-07T14:27:58,939 71 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-12-07T14:27:58,940 71 | while ((iread_ids.size()) && (j > ColumnIterator::get_next()’: 2021-12-07T14:28:03,394 src/columniterator.cpp:105:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-12-07T14:28:03,395 105 | assert(list_it->active_entry < read->getVariantCount()); 2021-12-07T14:28:03,395 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-12-07T14:28:03,430 src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’: 2021-12-07T14:28:03,430 src/columniterator.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-12-07T14:28:03,431 161 | assert(active_entry < read->getVariantCount()); 2021-12-07T14:28:03,431 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-12-07T14:28:07,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/entry.cpp -o build/temp.linux-armv7l-3.9/src/entry.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:09,280 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotype.cpp -o build/temp.linux-armv7l-3.9/src/genotype.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:14,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-3.9/src/genotypecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:20,624 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-3.9/src/genotypedistribution.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:23,264 src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’: 2021-12-07T14:28:23,265 src/genotypedistribution.cpp:55:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-12-07T14:28:23,265 55 | if (i == best_index) continue; 2021-12-07T14:28:23,265 | ~~^~~~~~~~~~~~~ 2021-12-07T14:28:24,284 In file included from /usr/include/c++/10/vector:72, 2021-12-07T14:28:24,285 from src/genotypedistribution.h:4, 2021-12-07T14:28:24,285 from src/genotypedistribution.cpp:5: 2021-12-07T14:28:24,285 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-12-07T14:28:24,286 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-12-07T14:28:24,286 426 | vector<_Tp, _Alloc>:: 2021-12-07T14:28:24,286 | ^~~~~~~~~~~~~~~~~~~ 2021-12-07T14:28:24,362 In file included from /usr/include/c++/10/vector:67, 2021-12-07T14:28:24,362 from src/genotypedistribution.h:4, 2021-12-07T14:28:24,362 from src/genotypedistribution.cpp:5: 2021-12-07T14:28:24,363 /usr/include/c++/10/bits/stl_vector.h: In constructor ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’: 2021-12-07T14:28:24,363 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-12-07T14:28:24,363 1198 | _M_realloc_insert(end(), __x); 2021-12-07T14:28:24,364 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-12-07T14:28:24,364 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-12-07T14:28:24,364 1198 | _M_realloc_insert(end(), __x); 2021-12-07T14:28:24,365 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-12-07T14:28:24,365 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-12-07T14:28:24,365 1198 | _M_realloc_insert(end(), __x); 2021-12-07T14:28:24,365 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-12-07T14:28:24,771 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypedptable.cpp -o build/temp.linux-armv7l-3.9/src/genotypedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:29,559 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’: 2021-12-07T14:28:29,560 src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable] 2021-12-07T14:28:29,560 61 | size_t column_count = input_column_iterator.get_column_count(); 2021-12-07T14:28:29,560 | ^~~~~~~~~~~~ 2021-12-07T14:28:29,669 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’: 2021-12-07T14:28:29,670 src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable] 2021-12-07T14:28:29,670 91 | unsigned int transmission_configurations = pow(4, pedigree->triple_count()); 2021-12-07T14:28:29,670 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-12-07T14:28:29,677 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’: 2021-12-07T14:28:29,677 src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-12-07T14:28:29,678 152 | if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) { 2021-12-07T14:28:29,678 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-12-07T14:28:29,684 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’: 2021-12-07T14:28:29,684 src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable] 2021-12-07T14:28:29,685 178 | size_t k = (size_t)sqrt(input_column_iterator.get_column_count()); 2021-12-07T14:28:29,685 | ^ 2021-12-07T14:28:38,310 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotyper.cpp -o build/temp.linux-armv7l-3.9/src/genotyper.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:43,459 In file included from /usr/include/c++/10/vector:72, 2021-12-07T14:28:43,460 from src/columniterator.h:4, 2021-12-07T14:28:43,460 from src/genotyper.cpp:6: 2021-12-07T14:28:43,460 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator]’: 2021-12-07T14:28:43,461 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-12-07T14:28:43,461 426 | vector<_Tp, _Alloc>:: 2021-12-07T14:28:43,462 | ^~~~~~~~~~~~~~~~~~~ 2021-12-07T14:28:43,876 In file included from /usr/include/c++/10/vector:67, 2021-12-07T14:28:43,876 from src/columniterator.h:4, 2021-12-07T14:28:43,876 from src/genotyper.cpp:6: 2021-12-07T14:28:43,877 /usr/include/c++/10/bits/stl_vector.h: In function ‘void compute_genotypes(const ReadSet&, std::vector*, std::vector*, std::vector*)’: 2021-12-07T14:28:43,877 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-12-07T14:28:43,877 1198 | _M_realloc_insert(end(), __x); 2021-12-07T14:28:43,878 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-12-07T14:28:44,259 In file included from /usr/include/c++/10/vector:72, 2021-12-07T14:28:44,259 from src/columniterator.h:4, 2021-12-07T14:28:44,259 from src/genotyper.cpp:6: 2021-12-07T14:28:44,260 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator]’: 2021-12-07T14:28:44,260 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-12-07T14:28:44,260 426 | vector<_Tp, _Alloc>:: 2021-12-07T14:28:44,261 | ^~~~~~~~~~~~~~~~~~~ 2021-12-07T14:28:44,515 /usr/include/c++/10/bits/vector.tcc: In function ‘void compute_polyploid_genotypes(const ReadSet&, size_t, std::vector*, std::vector*)’: 2021-12-07T14:28:44,515 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-12-07T14:28:44,516 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-12-07T14:28:44,516 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-12-07T14:28:44,517 In file included from /usr/include/c++/10/vector:67, 2021-12-07T14:28:44,518 from src/columniterator.h:4, 2021-12-07T14:28:44,518 from src/genotyper.cpp:6: 2021-12-07T14:28:44,518 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-12-07T14:28:44,518 1198 | _M_realloc_insert(end(), __x); 2021-12-07T14:28:44,519 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-12-07T14:28:45,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/graycodes.cpp -o build/temp.linux-armv7l-3.9/src/graycodes.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:47,730 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/balancedcombinations.cpp -o build/temp.linux-armv7l-3.9/src/hapchat/balancedcombinations.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:55,786 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/basictypes.cpp -o build/temp.linux-armv7l-3.9/src/hapchat/basictypes.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:28:59,318 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/binomialcoefficient.cpp -o build/temp.linux-armv7l-3.9/src/hapchat/binomialcoefficient.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:04,961 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/hapchatcolumniterator.cpp -o build/temp.linux-armv7l-3.9/src/hapchat/hapchatcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:09,808 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/hapchatcore.cpp -o build/temp.linux-armv7l-3.9/src/hapchat/hapchatcore.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:14,402 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2021-12-07T14:29:14,403 src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2021-12-07T14:29:14,403 145 | Counter counter_columns; 2021-12-07T14:29:14,404 | ^~~~~~~~~~~~~~~ 2021-12-07T14:29:14,426 src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2021-12-07T14:29:14,427 src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:14,427 208 | return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2021-12-07T14:29:14,427 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-12-07T14:29:14,717 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2021-12-07T14:29:14,718 src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable] 2021-12-07T14:29:14,718 939 | int old_k = k_j[input_pointer]; 2021-12-07T14:29:14,718 | ^~~~~ 2021-12-07T14:29:14,755 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2021-12-07T14:29:14,756 src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:14,756 1114 | (colJ[j].get_read_id() != -1) && 2021-12-07T14:29:14,756 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-12-07T14:29:14,757 src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:14,757 1115 | (colQ[i].get_read_id() != -1)) { 2021-12-07T14:29:14,758 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-12-07T14:29:14,760 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2021-12-07T14:29:14,761 src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:14,761 1159 | while(cov < column.size() && column[cov].get_read_id() != -1) { 2021-12-07T14:29:14,761 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-12-07T14:29:14,770 src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2021-12-07T14:29:14,770 src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:14,771 1294 | (colJ[j].get_read_id() != -1) && 2021-12-07T14:29:14,771 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-12-07T14:29:14,771 src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:14,772 1295 | (colQ[i].get_read_id() != -1)) { 2021-12-07T14:29:14,772 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-12-07T14:29:14,777 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2021-12-07T14:29:14,777 src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:14,777 1350 | if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2021-12-07T14:29:14,778 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-12-07T14:29:16,868 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/indexset.cpp -o build/temp.linux-armv7l-3.9/src/indexset.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:20,463 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigree.cpp -o build/temp.linux-armv7l-3.9/src/pedigree.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:23,466 In file included from /usr/include/c++/10/cassert:44, 2021-12-07T14:29:23,466 from src/pedigree.cpp:4: 2021-12-07T14:29:23,466 src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector, std::vector)’: 2021-12-07T14:29:23,467 src/pedigree.cpp:32:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-12-07T14:29:23,467 32 | assert(genotypes.size() == variant_count); 2021-12-07T14:29:23,467 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-12-07T14:29:23,468 src/pedigree.cpp:33:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-12-07T14:29:23,468 33 | assert(genotype_likelihoods.size() == variant_count); 2021-12-07T14:29:23,469 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-12-07T14:29:23,488 src/pedigree.cpp: In member function ‘const Genotype* Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’: 2021-12-07T14:29:23,489 src/pedigree.cpp:70:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-12-07T14:29:23,489 70 | assert(variant_index < variant_count); 2021-12-07T14:29:23,490 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2021-12-07T14:29:23,490 src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’: 2021-12-07T14:29:23,490 src/pedigree.cpp:81:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-12-07T14:29:23,491 81 | assert(variant_index < variant_count); 2021-12-07T14:29:23,492 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2021-12-07T14:29:23,520 src/pedigree.cpp: In member function ‘std::string Pedigree::toString() const’: 2021-12-07T14:29:23,520 src/pedigree.cpp:112:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-12-07T14:29:23,520 112 | for (size_t j=0; j&, size_t, const std::vector&, const Pedigree*, const PedigreePartitions&, bool)’: 2021-12-07T14:29:32,130 src/pedigreecolumncostcomputer.cpp:25:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-12-07T14:29:32,130 25 | for (unsigned int i = 0; i < (1< PedigreeColumnCostComputer::get_alleles()’: 2021-12-07T14:29:32,206 src/pedigreecolumncostcomputer.cpp:119:15: warning: unused variable ‘second_best_cost’ [-Wunused-variable] 2021-12-07T14:29:32,206 119 | unsigned int second_best_cost = numeric_limits < unsigned int >::max(); 2021-12-07T14:29:32,206 | ^~~~~~~~~~~~~~~~ 2021-12-07T14:29:34,791 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-3.9/src/pedigreedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:48,480 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-3.9/src/pedigreepartitions.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:52,592 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-3.9/src/phredgenotypelikelihoods.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:56,032 In file included from /usr/include/c++/10/vector:72, 2021-12-07T14:29:56,032 from src/genotype.h:4, 2021-12-07T14:29:56,033 from src/phredgenotypelikelihoods.h:5, 2021-12-07T14:29:56,033 from src/phredgenotypelikelihoods.cpp:4: 2021-12-07T14:29:56,033 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator]’: 2021-12-07T14:29:56,034 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-12-07T14:29:56,034 426 | vector<_Tp, _Alloc>:: 2021-12-07T14:29:56,034 | ^~~~~~~~~~~~~~~~~~~ 2021-12-07T14:29:56,109 /usr/include/c++/10/bits/vector.tcc: In member function ‘void PhredGenotypeLikelihoods::get_genotypes(std::vector&) const’: 2021-12-07T14:29:56,110 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-12-07T14:29:56,110 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-12-07T14:29:56,110 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-12-07T14:29:56,428 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/polyphase/clustereditingsolution.cpp -o build/temp.linux-armv7l-3.9/src/polyphase/clustereditingsolution.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:29:59,511 In file included from src/polyphase/clustereditingsolution.h:4, 2021-12-07T14:29:59,512 from src/polyphase/clustereditingsolution.cpp:1: 2021-12-07T14:29:59,512 src/polyphase/staticsparsegraph.h: In member function ‘std::string StaticSparseGraph::int2bin(uint64_t)’: 2021-12-07T14:29:59,512 src/polyphase/staticsparsegraph.h:225:30: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:29:59,513 225 | uint64_t mask = (1UL << 63); // fill in values right-to-left 2021-12-07T14:29:59,513 | ~~~~^~~~~ 2021-12-07T14:30:00,440 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/polyphase/clustereditingsolver.cpp -o build/temp.linux-armv7l-3.9/src/polyphase/clustereditingsolver.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:30:03,597 In file included from src/polyphase/clustereditingsolution.h:4, 2021-12-07T14:30:03,597 from src/polyphase/clustereditingsolver.h:10, 2021-12-07T14:30:03,597 from src/polyphase/clustereditingsolver.cpp:1: 2021-12-07T14:30:03,598 src/polyphase/staticsparsegraph.h: In member function ‘std::string StaticSparseGraph::int2bin(uint64_t)’: 2021-12-07T14:30:03,598 src/polyphase/staticsparsegraph.h:225:30: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:30:03,598 225 | uint64_t mask = (1UL << 63); // fill in values right-to-left 2021-12-07T14:30:03,598 | ~~~~^~~~~ 2021-12-07T14:30:05,160 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/polyphase/edgeheap.cpp -o build/temp.linux-armv7l-3.9/src/polyphase/edgeheap.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:30:08,291 In file included from src/polyphase/edgeheap.h:6, 2021-12-07T14:30:08,292 from src/polyphase/edgeheap.cpp:1: 2021-12-07T14:30:08,292 src/polyphase/staticsparsegraph.h: In member function ‘std::string StaticSparseGraph::int2bin(uint64_t)’: 2021-12-07T14:30:08,293 src/polyphase/staticsparsegraph.h:225:30: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:30:08,293 225 | uint64_t mask = (1UL << 63); // fill in values right-to-left 2021-12-07T14:30:08,293 | ~~~~^~~~~ 2021-12-07T14:30:13,539 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/polyphase/haplothreader.cpp -o build/temp.linux-armv7l-3.9/src/polyphase/haplothreader.o -std=c++11 -Werror=return-type -Werror=narrowing 2021-12-07T14:30:16,405 In file included from src/polyphase/haplothreader.cpp:1: 2021-12-07T14:30:16,406 src/polyphase/haplothreader.h:30:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:30:16,406 30 | 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2021-12-07T14:30:16,406 | ~~~~~^~~~~ 2021-12-07T14:30:16,407 src/polyphase/haplothreader.h:31:14: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:30:16,407 31 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2021-12-07T14:30:16,408 | ~~~~~^~~~~ 2021-12-07T14:30:16,408 src/polyphase/haplothreader.h:31:26: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:30:16,408 31 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2021-12-07T14:30:16,409 | ~~~~~^~~~~ 2021-12-07T14:30:16,409 src/polyphase/haplothreader.h:31:38: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:30:16,409 31 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2021-12-07T14:30:16,410 | ~~~~~^~~~~ 2021-12-07T14:30:16,410 src/polyphase/haplothreader.h:31:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2021-12-07T14:30:16,410 31 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2021-12-07T14:30:16,411 | ~~~~~^~~~~ 2021-12-07T14:30:16,412 src/polyphase/haplothreader.h:30:50: error: right operand of shift expression ‘(31 << 35)’ is greater than or equal to the precision 32 of the left operand [-fpermissive] 2021-12-07T14:30:16,412 30 | 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2021-12-07T14:30:16,413 | ~~~~~^~~~~ 2021-12-07T14:30:17,282 src/polyphase/haplothreader.cpp: In member function ‘std::vector > HaploThreader::computePaths(Position, Position, const std::vector >&, const std::vector >&, const std::vector >&, const std::vector >&, Position) const’: 2021-12-07T14:30:17,283 src/polyphase/haplothreader.cpp:253:18: warning: unused variable ‘allRows’ [-Wunused-variable] 2021-12-07T14:30:17,283 253 | uint32_t allRows = column.size(); 2021-12-07T14:30:17,283 | ^~~~~~~ 2021-12-07T14:30:19,038 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-12-07T14:30:19,229 Building wheel for whatshap (pyproject.toml): finished with status 'error' 2021-12-07T14:30:19,233 ERROR: Failed building wheel for whatshap 2021-12-07T14:30:19,237 Failed to build whatshap 2021-12-07T14:30:19,238 ERROR: Failed to build one or more wheels 2021-12-07T14:30:19,239 Exception information: 2021-12-07T14:30:19,239 Traceback (most recent call last): 2021-12-07T14:30:19,239 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 164, in exc_logging_wrapper 2021-12-07T14:30:19,239 status = run_func(*args) 2021-12-07T14:30:19,239 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-12-07T14:30:19,239 return func(self, options, args) 2021-12-07T14:30:19,239 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 175, in run 2021-12-07T14:30:19,239 raise CommandError("Failed to build one or more wheels") 2021-12-07T14:30:19,239 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-12-07T14:30:19,247 Removed build tracker: '/tmp/pip-req-tracker-qnnc8t8t'