2021-12-10T00:54:35,658 Created temporary directory: /tmp/pip-ephem-wheel-cache-5x_b8iwb 2021-12-10T00:54:35,667 Created temporary directory: /tmp/pip-req-tracker-jpgvu_91 2021-12-10T00:54:35,667 Initialized build tracking at /tmp/pip-req-tracker-jpgvu_91 2021-12-10T00:54:35,668 Created build tracker: /tmp/pip-req-tracker-jpgvu_91 2021-12-10T00:54:35,668 Entered build tracker: /tmp/pip-req-tracker-jpgvu_91 2021-12-10T00:54:35,670 Created temporary directory: /tmp/pip-wheel-rhmwt7sg 2021-12-10T00:54:35,738 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-12-10T00:54:35,744 2 location(s) to search for versions of deepcell-spots: 2021-12-10T00:54:35,744 * https://pypi.org/simple/deepcell-spots/ 2021-12-10T00:54:35,744 * https://www.piwheels.org/simple/deepcell-spots/ 2021-12-10T00:54:35,745 Fetching project page and analyzing links: https://pypi.org/simple/deepcell-spots/ 2021-12-10T00:54:35,746 Getting page https://pypi.org/simple/deepcell-spots/ 2021-12-10T00:54:35,749 Found index url https://pypi.org/simple 2021-12-10T00:54:35,947 Found link https://files.pythonhosted.org/packages/f3/8d/600be8956d102f1a694f4b212d75a18a6c8bec76917a1cd7245b86ceaacc/DeepCell-Spots-0.1.0.tar.gz#sha256=5edb0e7f7d27ab305e5dcc0f470563527ee903fd111fbd6fe23c68c621ea06fe (from https://pypi.org/simple/deepcell-spots/) (requires-python:>=3.6, <3.9), version: 0.1.0 2021-12-10T00:54:35,948 Fetching project page and analyzing links: https://www.piwheels.org/simple/deepcell-spots/ 2021-12-10T00:54:35,949 Getting page https://www.piwheels.org/simple/deepcell-spots/ 2021-12-10T00:54:35,951 Found index url https://www.piwheels.org/simple 2021-12-10T00:54:36,161 Skipping link: not a file: https://www.piwheels.org/simple/deepcell-spots/ 2021-12-10T00:54:36,162 Skipping link: not a file: https://pypi.org/simple/deepcell-spots/ 2021-12-10T00:54:36,193 Given no hashes to check 1 links for project 'deepcell-spots': discarding no candidates 2021-12-10T00:54:36,223 Collecting deepcell-spots==0.1.0 2021-12-10T00:54:36,227 Created temporary directory: /tmp/pip-unpack-d2h7_cof 2021-12-10T00:54:36,452 Downloading DeepCell-Spots-0.1.0.tar.gz (55 kB) 2021-12-10T00:54:36,667 Added deepcell-spots==0.1.0 from https://files.pythonhosted.org/packages/f3/8d/600be8956d102f1a694f4b212d75a18a6c8bec76917a1cd7245b86ceaacc/DeepCell-Spots-0.1.0.tar.gz#sha256=5edb0e7f7d27ab305e5dcc0f470563527ee903fd111fbd6fe23c68c621ea06fe to build tracker '/tmp/pip-req-tracker-jpgvu_91' 2021-12-10T00:54:36,669 Running setup.py (path:/tmp/pip-wheel-rhmwt7sg/deepcell-spots_76ba867d2cd94c52b9b2054df5f7b0a3/setup.py) egg_info for package deepcell-spots 2021-12-10T00:54:36,670 Created temporary directory: /tmp/pip-pip-egg-info-lzsso4nf 2021-12-10T00:54:36,671 Preparing metadata (setup.py): started 2021-12-10T00:54:36,671 Running command python setup.py egg_info 2021-12-10T00:54:38,526 running egg_info 2021-12-10T00:54:38,531 creating /tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info 2021-12-10T00:54:38,532 writing /tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info/PKG-INFO 2021-12-10T00:54:38,536 writing dependency_links to /tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info/dependency_links.txt 2021-12-10T00:54:38,540 writing requirements to /tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info/requires.txt 2021-12-10T00:54:38,542 writing top-level names to /tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info/top_level.txt 2021-12-10T00:54:38,545 writing manifest file '/tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info/SOURCES.txt' 2021-12-10T00:54:38,565 reading manifest file '/tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info/SOURCES.txt' 2021-12-10T00:54:38,568 adding license file 'LICENSE' 2021-12-10T00:54:38,575 writing manifest file '/tmp/pip-pip-egg-info-lzsso4nf/DeepCell_Spots.egg-info/SOURCES.txt' 2021-12-10T00:54:38,679 Preparing metadata (setup.py): finished with status 'done' 2021-12-10T00:54:38,688 Source in /tmp/pip-wheel-rhmwt7sg/deepcell-spots_76ba867d2cd94c52b9b2054df5f7b0a3 has version 0.1.0, which satisfies requirement deepcell-spots==0.1.0 from https://files.pythonhosted.org/packages/f3/8d/600be8956d102f1a694f4b212d75a18a6c8bec76917a1cd7245b86ceaacc/DeepCell-Spots-0.1.0.tar.gz#sha256=5edb0e7f7d27ab305e5dcc0f470563527ee903fd111fbd6fe23c68c621ea06fe 2021-12-10T00:54:38,690 Removed deepcell-spots==0.1.0 from https://files.pythonhosted.org/packages/f3/8d/600be8956d102f1a694f4b212d75a18a6c8bec76917a1cd7245b86ceaacc/DeepCell-Spots-0.1.0.tar.gz#sha256=5edb0e7f7d27ab305e5dcc0f470563527ee903fd111fbd6fe23c68c621ea06fe from build tracker '/tmp/pip-req-tracker-jpgvu_91' 2021-12-10T00:54:38,704 Created temporary directory: /tmp/pip-unpack-9obxy_om 2021-12-10T00:54:38,705 Building wheels for collected packages: deepcell-spots 2021-12-10T00:54:38,712 Created temporary directory: /tmp/pip-wheel-rcu1f0z5 2021-12-10T00:54:38,713 Building wheel for deepcell-spots (setup.py): started 2021-12-10T00:54:38,714 Destination directory: /tmp/pip-wheel-rcu1f0z5 2021-12-10T00:54:38,714 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rhmwt7sg/deepcell-spots_76ba867d2cd94c52b9b2054df5f7b0a3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rhmwt7sg/deepcell-spots_76ba867d2cd94c52b9b2054df5f7b0a3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rcu1f0z5 2021-12-10T00:54:40,579 running bdist_wheel 2021-12-10T00:54:40,587 running build 2021-12-10T00:54:40,587 running build_py 2021-12-10T00:54:40,598 creating build 2021-12-10T00:54:40,599 creating build/lib 2021-12-10T00:54:40,600 creating build/lib/deepcell_spots 2021-12-10T00:54:40,602 copying deepcell_spots/spot_em_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,606 copying deepcell_spots/preprocessing_utils.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,609 copying deepcell_spots/postprocessing_utils_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,613 copying deepcell_spots/image_generators.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,617 copying deepcell_spots/__init__.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,620 copying deepcell_spots/image_alignment.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,624 copying deepcell_spots/point_metrics_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,628 copying deepcell_spots/dotnet_losses.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,632 copying deepcell_spots/image_generators_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,636 copying deepcell_spots/singleplex_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,639 copying deepcell_spots/simulate_data_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,643 copying deepcell_spots/preprocessing_utils_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,646 copying deepcell_spots/singleplex.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,649 copying deepcell_spots/_version.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,652 copying deepcell_spots/postprocessing_utils.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,656 copying deepcell_spots/simulate_data.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,660 copying deepcell_spots/data_utils.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,665 copying deepcell_spots/multiplex_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,668 copying deepcell_spots/utils_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,671 copying deepcell_spots/cluster_vis.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,675 copying deepcell_spots/image_alignment_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,678 copying deepcell_spots/spot_em.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,683 copying deepcell_spots/dotnet.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,687 copying deepcell_spots/utils.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,692 copying deepcell_spots/cluster_vis_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,695 copying deepcell_spots/training.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,699 copying deepcell_spots/data_utils_test.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,703 copying deepcell_spots/point_metrics.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,707 copying deepcell_spots/multiplex.py -> build/lib/deepcell_spots 2021-12-10T00:54:40,713 creating build/lib/deepcell_spots/applications 2021-12-10T00:54:40,715 copying deepcell_spots/applications/__init__.py -> build/lib/deepcell_spots/applications 2021-12-10T00:54:40,718 copying deepcell_spots/applications/polaris.py -> build/lib/deepcell_spots/applications 2021-12-10T00:54:40,733 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2021-12-10T00:54:40,734 setuptools.SetuptoolsDeprecationWarning, 2021-12-10T00:54:40,737 installing to build/bdist.linux-armv7l/wheel 2021-12-10T00:54:40,738 running install 2021-12-10T00:54:40,739 running install_lib 2021-12-10T00:54:40,746 creating build/bdist.linux-armv7l 2021-12-10T00:54:40,746 creating build/bdist.linux-armv7l/wheel 2021-12-10T00:54:40,750 creating build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,752 copying build/lib/deepcell_spots/spot_em_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,757 copying build/lib/deepcell_spots/preprocessing_utils.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,760 copying build/lib/deepcell_spots/postprocessing_utils_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,764 copying build/lib/deepcell_spots/image_generators.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,768 copying build/lib/deepcell_spots/__init__.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,772 copying build/lib/deepcell_spots/image_alignment.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,776 copying build/lib/deepcell_spots/point_metrics_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,780 copying build/lib/deepcell_spots/dotnet_losses.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,784 copying build/lib/deepcell_spots/image_generators_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,788 copying build/lib/deepcell_spots/singleplex_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,791 copying build/lib/deepcell_spots/simulate_data_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,795 copying build/lib/deepcell_spots/preprocessing_utils_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,799 copying build/lib/deepcell_spots/singleplex.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,802 copying build/lib/deepcell_spots/_version.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,806 copying build/lib/deepcell_spots/postprocessing_utils.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,810 copying build/lib/deepcell_spots/simulate_data.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,814 copying build/lib/deepcell_spots/data_utils.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,818 copying build/lib/deepcell_spots/multiplex_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,821 copying build/lib/deepcell_spots/utils_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,824 copying build/lib/deepcell_spots/cluster_vis.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,828 copying build/lib/deepcell_spots/image_alignment_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,831 copying build/lib/deepcell_spots/spot_em.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,836 copying build/lib/deepcell_spots/dotnet.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,840 creating build/bdist.linux-armv7l/wheel/deepcell_spots/applications 2021-12-10T00:54:40,842 copying build/lib/deepcell_spots/applications/__init__.py -> build/bdist.linux-armv7l/wheel/deepcell_spots/applications 2021-12-10T00:54:40,845 copying build/lib/deepcell_spots/applications/polaris.py -> build/bdist.linux-armv7l/wheel/deepcell_spots/applications 2021-12-10T00:54:40,849 copying build/lib/deepcell_spots/utils.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,854 copying build/lib/deepcell_spots/cluster_vis_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,857 copying build/lib/deepcell_spots/training.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,861 copying build/lib/deepcell_spots/data_utils_test.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,866 copying build/lib/deepcell_spots/point_metrics.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,871 copying build/lib/deepcell_spots/multiplex.py -> build/bdist.linux-armv7l/wheel/deepcell_spots 2021-12-10T00:54:40,875 running install_egg_info 2021-12-10T00:54:40,912 running egg_info 2021-12-10T00:54:40,913 writing DeepCell_Spots.egg-info/PKG-INFO 2021-12-10T00:54:40,917 writing dependency_links to DeepCell_Spots.egg-info/dependency_links.txt 2021-12-10T00:54:40,920 writing requirements to DeepCell_Spots.egg-info/requires.txt 2021-12-10T00:54:40,922 writing top-level names to DeepCell_Spots.egg-info/top_level.txt 2021-12-10T00:54:40,935 reading manifest file 'DeepCell_Spots.egg-info/SOURCES.txt' 2021-12-10T00:54:40,939 adding license file 'LICENSE' 2021-12-10T00:54:40,947 writing manifest file 'DeepCell_Spots.egg-info/SOURCES.txt' 2021-12-10T00:54:40,950 Copying DeepCell_Spots.egg-info to build/bdist.linux-armv7l/wheel/DeepCell_Spots-0.1.0-py3.7.egg-info 2021-12-10T00:54:40,969 running install_scripts 2021-12-10T00:54:41,179 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-12-10T00:54:41,188 creating build/bdist.linux-armv7l/wheel/DeepCell_Spots-0.1.0.dist-info/WHEEL 2021-12-10T00:54:41,193 creating '/tmp/pip-wheel-rcu1f0z5/DeepCell_Spots-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-12-10T00:54:41,201 adding 'deepcell_spots/__init__.py' 2021-12-10T00:54:41,203 adding 'deepcell_spots/_version.py' 2021-12-10T00:54:41,206 adding 'deepcell_spots/cluster_vis.py' 2021-12-10T00:54:41,208 adding 'deepcell_spots/cluster_vis_test.py' 2021-12-10T00:54:41,211 adding 'deepcell_spots/data_utils.py' 2021-12-10T00:54:41,215 adding 'deepcell_spots/data_utils_test.py' 2021-12-10T00:54:41,218 adding 'deepcell_spots/dotnet.py' 2021-12-10T00:54:41,222 adding 'deepcell_spots/dotnet_losses.py' 2021-12-10T00:54:41,226 adding 'deepcell_spots/image_alignment.py' 2021-12-10T00:54:41,228 adding 'deepcell_spots/image_alignment_test.py' 2021-12-10T00:54:41,234 adding 'deepcell_spots/image_generators.py' 2021-12-10T00:54:41,237 adding 'deepcell_spots/image_generators_test.py' 2021-12-10T00:54:41,242 adding 'deepcell_spots/multiplex.py' 2021-12-10T00:54:41,245 adding 'deepcell_spots/multiplex_test.py' 2021-12-10T00:54:41,250 adding 'deepcell_spots/point_metrics.py' 2021-12-10T00:54:41,253 adding 'deepcell_spots/point_metrics_test.py' 2021-12-10T00:54:41,256 adding 'deepcell_spots/postprocessing_utils.py' 2021-12-10T00:54:41,259 adding 'deepcell_spots/postprocessing_utils_test.py' 2021-12-10T00:54:41,261 adding 'deepcell_spots/preprocessing_utils.py' 2021-12-10T00:54:41,264 adding 'deepcell_spots/preprocessing_utils_test.py' 2021-12-10T00:54:41,269 adding 'deepcell_spots/simulate_data.py' 2021-12-10T00:54:41,272 adding 'deepcell_spots/simulate_data_test.py' 2021-12-10T00:54:41,275 adding 'deepcell_spots/singleplex.py' 2021-12-10T00:54:41,278 adding 'deepcell_spots/singleplex_test.py' 2021-12-10T00:54:41,284 adding 'deepcell_spots/spot_em.py' 2021-12-10T00:54:41,287 adding 'deepcell_spots/spot_em_test.py' 2021-12-10T00:54:41,291 adding 'deepcell_spots/training.py' 2021-12-10T00:54:41,296 adding 'deepcell_spots/utils.py' 2021-12-10T00:54:41,298 adding 'deepcell_spots/utils_test.py' 2021-12-10T00:54:41,302 adding 'deepcell_spots/applications/__init__.py' 2021-12-10T00:54:41,305 adding 'deepcell_spots/applications/polaris.py' 2021-12-10T00:54:41,310 adding 'DeepCell_Spots-0.1.0.dist-info/LICENSE' 2021-12-10T00:54:41,313 adding 'DeepCell_Spots-0.1.0.dist-info/METADATA' 2021-12-10T00:54:41,315 adding 'DeepCell_Spots-0.1.0.dist-info/WHEEL' 2021-12-10T00:54:41,316 adding 'DeepCell_Spots-0.1.0.dist-info/top_level.txt' 2021-12-10T00:54:41,317 adding 'DeepCell_Spots-0.1.0.dist-info/RECORD' 2021-12-10T00:54:41,324 removing build/bdist.linux-armv7l/wheel 2021-12-10T00:54:41,463 Building wheel for deepcell-spots (setup.py): finished with status 'done' 2021-12-10T00:54:41,469 Created wheel for deepcell-spots: filename=DeepCell_Spots-0.1.0-py3-none-any.whl size=86420 sha256=cfc169f6cb5ee8c936326812b225cc3ac1c3bd614966eafb5e2229140561238e 2021-12-10T00:54:41,470 Stored in directory: /tmp/pip-ephem-wheel-cache-5x_b8iwb/wheels/f4/e3/4b/deb6e348a6be1ffe8a39f9e9d814080098ebb2133cefbbc365 2021-12-10T00:54:41,497 Successfully built deepcell-spots 2021-12-10T00:54:41,509 Removed build tracker: '/tmp/pip-req-tracker-jpgvu_91'